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def distance_along_glacier(nx, map_dx): """Calculates the distance along the glacier in km. Parameters ---------- nx : int number of grid points map_dx : int grid point spacing Returns ------- ndarray distance along the glacier in km. """ return np.linsp...
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def make_docs(): """Create documentation""" with lcd("docs"): ## generate Sphinx HTML documentation, including API docs try: remove("docs/fab_support.rst") except FileNotFoundError: pass try: remove("docs/modules.rst") except FileNotFou...
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def p_entity_body_outer(p: YaccProduction) -> None: """entity_body_outer : mls entity_body END""" p[0] = (p[1], p[2])
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def make_postdict_to_fetch_token(token_endpoint: str, grant_type: str, code: str, client_id: str, client_secret: str, redirect_uri: str) -> dict: """POST dictionary is the API of the requests library""" return {'u...
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def _haxe_std_lib(ctx): """ _haxe_std_lib implementation. Args: ctx: Bazel context. """ toolchain = ctx.toolchains["@rules_haxe//:toolchain_type"] build_source_file = ctx.actions.declare_file("StdBuild.hx") toolchain.create_std_build( ctx, ctx.attr.t...
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def detect_vswhere_path(): """ Attempt to detect the location of vswhere, which is used to query the installed visual studio tools (version 2017+) :return: The validated path to vswhere """ # Find VS Where path_program_files_x86 = os.environ['ProgramFiles(x86)'] if not path_program_files_x86...
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def spread_match_network(expr_df_in, node_names_in): """ Matches S (spreadsheet of gene expressions) and N (network) The function returns expr_df_out which is formed by reshuffling columns of expr_df_in. Also, node_names_out is formed by reshuffling node_names_in. The intersection of node_names...
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def _InstallNanny(): """Installs the nanny program.""" # We need to copy the nanny sections to the registry to ensure the # service is correctly configured. new_config = config.CONFIG.MakeNewConfig() new_config.SetWriteBack(config.CONFIG["Config.writeback"]) for option in _NANNY_OPTIONS: new_config.Set...
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def top_level(url, data): """Read top level names from compressed file.""" sb = io.BytesIO(data) txt = None with Archive(url, sb) as archive: file = None for name in archive.names: if name.lower().endswith('top_level.txt'): file = name break ...
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def get_timeseries_data(request): """ AJAX Controller for getting time series data. """ return_obj = {} # -------------------- # # VERIFIES REQUEST # # -------------------- # if not (request.is_ajax() and request.method == "POST"): return_obj["error"] = "Unable to establis...
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def line_col(lbreaks: List[int], pos: int) -> Tuple[int, int]: """ Returns the position within a text as (line, column)-tuple based on a list of all line breaks, including -1 and EOF. """ if not lbreaks and pos >= 0: return 0, pos if pos < 0 or pos > lbreaks[-1]: # one character behind ...
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def show_img_augmentation(X, Y, sess): """This function is to visulize the result of data augmentation for testing""" i = 0 # show the i-th image img_ori, img_aug, hm_ori, hm_aug = sess.run([x_in, x_batch, y_in, hm_target_batch], feed_dict={x_in: X, y_in: Y}) img_aug = reshape_img(img_aug, i) img_o...
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def init_setup(dbhost, dbname, dbusername, dbpassword, projectpath): """ This function will check/create the config.json in project root. then it'll check/create the revision table in database """ cwd = get_cwd() json_dict = { "host": dbhost, "database": dbname, "user": dbusername, "pass...
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def add_scrollbars_with_tags(outer, InnerType, *inner_args, **inner_kw): """ Wrapper around `add_scrollbars`. Returns tuple of InnerType instance and scroll tag. Scroll tag should be added to all `inner` child widgets that affect scrolling. """ scrolltag = "tag_" + str(next(tags_count)) inner = add_sc...
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def sample_from_script(script_path, num_lines, chars_per_line): """Sample num_lines from a script. Parameters ---------- script_path : str Path to the script num_lines : int Number of lines to sample. chars_per_line : int Numer of consecutive characters...
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def is_valid_uuid(x): """Determine whether this is a valid hex-encoded uuid.""" if not x or len(x) != 36: return False return (parse_uuid(x) != None)
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def wait_for_needle_list( loops: int, needle_list: list[tuple[str, tuple[int, int, int, int]]], sleep_range: tuple[int, int], ): """ Works like vision.wait_for_needle(), except multiple needles can be searched for simultaneously. Args: loops: The number of tries to look for each nee...
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def get_word(): """Returns random word.""" words = ['Charlie', 'Woodstock', 'Snoopy', 'Lucy', 'Linus', 'Schroeder', 'Patty', 'Sally', 'Marcie'] return random.choice(words).upper()
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def write_out_tf_examples(objects, path): """Writes out list of objects out as a single tf_example Args: objects (list): list of objects to put into the tf_example path (Path): directory to write this tf_example to, encompassing the name """ num_shards = (len(objects) // 1000) + 1 ...
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async def test_get_scm(client): """Test case for get_scm """ headers = { 'Accept': 'application/json', 'Authorization': 'BasicZm9vOmJhcg==', } response = await client.request( method='GET', path='/blue/rest/organizations/{organization}/scm/{scm}'.format(organiz...
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def is_admin(user): """Check if the user is administrator""" admin_user = current_app.config['ADMIN_USER'] if user.email == admin_user or user.email.replace('@cern.ch', '') == admin_user: current_app.logger.debug('User {user} is admin'.format(user=user.email)) return True return False
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def test_task_to_data_relationship(dbsession): """Test data integrity across relationship between tables.""" get_id = uuid4() g = GetTickerTask( id=get_id, ticker='AUD_JPY', price='M', granularity='M15', _from=d.strptime('2018-02-01 13:00:00', '%Y-%m-%d %H:%M:%S'), to=d.strptime('201...
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def test_get_port_from_range(port_range): """Test getting random port from given range.""" assert get_port(port_range) in list(range(2000, 3000 + 1))
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def parsed_json_to_dict(parsed): """ Convert parsed dict into dict with python built-in type param: parsed parsed dict by json decoder """ new_bangumi = {} new_bangumi['name'] = parsed['name'] new_bangumi['start_date'] = datetime.strptime( parsed['start_date'], '%Y-%m-%d')....
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def download_osmnx_graph(): # pragma: no cover """Load a simple street map from Open Street Map. Generated from: .. code:: python >>> import osmnx as ox # doctest:+SKIP >>> address = 'Holzgerlingen DE' # doctest:+SKIP >>> graph = ox.graph_from_address(address, dist=500, network...
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def plot_shift_type_by_frequency(tidy_schedule: pandas.DataFrame) -> tuple: """ Plots a bar graph of shift type frequencies. :param tidy_schedule: A pandas data frame containing a schedule, as loaded by load_tidy_schedule(). :type tidy_schedule: pandas.DataFrame :return: A tuple with a figure a...
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def main(args): """Main function. Parses the raw uri file and generates a new file without length number at the beginning of the line If the line is empty a warning log will be shown :param args: command-line retrieved arguments :type args: ArgumentParser.parse_args() :raises FileNo...
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def experiment(variant): """ This is a job script for running NPG/DAPG on hand tasks and other gym envs. Note that DAPG generalizes PG and BC init + PG finetuning. With appropriate settings of parameters, we can recover the full family. """ import mj_envs job_data = default_job_data.copy() ...
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def load_image(path, size=None): """ Load the image from the given file-path and resize it to the given size if not None. Eg: size = (width, height) """ img = Image.open(path) if (size != None) and (size != ''): img = img.resize(size=size, resample=Image.LANCZOS) img = np.array(img...
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def test_indexer(): """ Test Indexer class """ assert dataclasses.asdict(IdrDex) == { 'Ed25519_Sig': 'A', 'ECDSA_256k1_Sig': 'B', 'Ed448_Sig': '0A', 'Label': '0B' } assert IdrDex.Ed25519_Sig == 'A' # Ed25519 signature. assert IdrDex.ECDSA_256k1_Sig == 'B' #...
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def train_linkpred(model, optimizer, train_loader_generator, validation_loader_generator ): """ :param model: :param optimizer: :param train_loader_generator: :param validation_loader_generator: :return: """ for...
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def call_wifi(label): """Wifi connect function Parameters ---------- label : str Output label Returns ------- None """ try: # Setup wifi and connection print(wifi.radio.connect(secrets['ssid'], secrets['password'])) print('ip', wifi.radio.ipv4_addre...
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def load_normalized_face_landmarks(): """ Loads the locations of each of the 68 landmarks :return: """ normalized_face_landmarks = np.float32([ (0.0792396913815, 0.339223741112), (0.0829219487236, 0.456955367943), (0.0967927109165, 0.575648016728), (0.122141515615, 0.691921601066), ...
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def vacuum_vessel(shot): """ Get the coordinates of the Tore Supra / WEST vacuum vessel R_wall, Z_wall = vacuum_vessel(shot) Arguments: - shot: Tore Supra or WEST shot number Returns: - R_wall: radius of the vacuum chamber walls [m] - Z_wall: height of the vacuum chamber w...
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def backup_file(file): """Create timestamp'd backup of a file Args: file (str): filepath Returns: backupfile(str) """ current_time = datetime.now() time_stamp = current_time.strftime("%b-%d-%y-%H.%M.%S") backupfile = file +'.bkp_'+ time_stamp copyfile(file, backupfil...
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def svn_client_mergeinfo_log_eligible(*args): """ svn_client_mergeinfo_log_eligible(char path_or_url, svn_opt_revision_t peg_revision, char merge_source_path_or_url, svn_opt_revision_t src_peg_revision, svn_log_entry_receiver_t receiver, svn_boolean_t discover_changed_paths, ap...
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def share_nodes_sockets(): """ Create a shared node layout where the simulation and analysis ranks share compute nodes. Furthermore, they share sockets of the node. """ shared_sockets = SummitNode() for i in range(10): shared_sockets.cpu[i] = "simulation:{}".format(i) shared_soc...
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def imlist(img_dir, valid_exts=None, if_recursive=False): """ List images under directory :param img_dir: :param valid_exts: :param if_recursive: :return: """ from glob import glob if is_str(valid_exts): valid_exts = [valid_exts.strip(".")] valid_exts = list(valid_exts) i...
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def add_assignment_to_db(db, assignment): """ Adds an assignment to the database :param db: (string) The database to connect to :param assignment: (Feature) The assignment to add :return: """ conn = sqlite3.connect(db) c = conn.cursor() params = ( assignment.global_id, ) ...
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def _rle_decode(data): """ Decodes run-length-encoded `data`. """ if not data: return data new = b'' last = b'' for cur in data: if last == b'\0': new += last * cur last = b'' else: new += last last = bytes([cur]) ...
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def blend_and_save(freq_dict, filename, colormap='viridis', dots=600): """Plot a heatmap, upscale it to the keyboard and save a blended image.""" # Clear the heatmap plot and axes plt.clf() plt.xticks([]) plt.yticks([]) plt.axis('off') # Display the data on the heatmap heatmap_data = get...
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def flatten(lst): """Helper function used to massage the raw tweet data.""" for el in lst: if (isinstance(el, collections.Iterable) and not isinstance(el, str)): for sub in flatten(el): yield sub else: yield el
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def setup(app): """ Set up the sphinx extension. """ app.add_role('f', f_role) app.add_role('ipa', ipa_role)
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def find_shift_between_two_models(model_1,model_2,shift_range=5,number_of_evaluations=10,rotation_angles=[0.,0.,0.], cropping_model=0,initial_guess=[0.,0.,0.], method='brute_force',full_output=False): """ Find the correct shift alignment in 3D by using a different optimization...
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def read_cmd(frame, data): """Get the return of the cmd sent to the MicroPython card :param data: The commande sent :type data: str :return: the return of the command sent :rtype: str """ b = frame.serial.read(frame.serial.in_waiting) frame.is_data = False if b: frame.is_d...
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def get_url( url: str, stream: bool = False, session: Optional[requests.Session] = None ) -> requests.Response: """Call requests.get() on a url and return the requests.Response.""" if not session: session = retry_session() resp = session.get(url, stream=stream) resp.raise_for_status(...
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def uploadFromPath(localFilePath: str, resource, bucketName: str, fileID: str, headerArgs: Optional[dict] = None, partSize: int = 50 << 20): """ Uploads a file to s3, using multipart uploading if applicable :para...
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def scale_log2lin(value): """ Scale value from log10 to linear scale: 10**(value/10) Parameters ---------- value : float or array-like Value or array to be scaled Returns ------- float or array-like Scaled value """ return 10**(value/10)
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async def test_key_error(opp): """Test Connect returning empty string.""" flow = config_flow.SomaFlowHandler() flow.opp = opp with patch.object(SomaApi, "list_devices", return_value={}): result = await flow.async_step_import({"host": MOCK_HOST, "port": MOCK_PORT}) assert result["type"] == da...
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def _cal_tgt_match_pct_worker(in_queue, out_queue, mapped_intervals, tgt_data, src_data, src_samples, ref_match_pct, sample_size, query_ref_match_pct, mapped_len_esp, len_esp, var_esp, sfs_esp): """ Description: Worker function to calculate match percents in target populations. Arguments: i...
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def train( train_length:Union[int, TrainLength], model:nn.Module, dls:DataLoaders, loss_func:LossFunction, opt:torch.optim.Optimizer, sched=None, metric:Optional[Metric]=None, device=None, clip_grad:ClipGradOptions=None, callbacks:List[TrainingCallback]=None ) -> TrainingStats: """ Train `model` w...
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def _error_to_level(error): """Convert a boolean error field to 'Error' or 'Info' """ if error: return 'Error' else: return 'Info'
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def add_review(status): """ Adds the flags on the tracker document. Input: tracker document. Output: sum of the switches. """ cluster = status['cluster_switch'] classify = status['classify_switch'] replace = status['replace_switch'] final = status['final_switch'] finished = statu...
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def test_pyramid_conv_encoder_forward_invalid_mask(config, images, masks): """Test PyramidConvEncoder.forward handles some invalid masks.""" encoder = encoders.PyramidConvEncoder(config=config, pretrained=False) masks[-2:] = 0 actual = encoder(images, masks) assert actual.shape == (BATCH_SIZE, *enco...
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def n_floordiv(a, b): """safe floordiv""" return np.where(b != 0, o.floordiv(a, b), 1)
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def load_encoder_inputs(encoder_np_vecs='train_body_vecs.npy'): """ Load variables & data that are inputs to encoder. Parameters ---------- encoder_np_vecs : str filename of serialized numpy.array of encoder input (issue title) Returns ------- encoder_input_data : numpy.array The issue body ...
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def test_parse_args(): """Test argument parser of cli.""" argv = ['hourly', '--startyear', '2008', '--variables', 'total_precipitation', '--statistics', '--endyear', '2008', '--ensemble', '--land'] args = cli._parse_args(argv) assert args.command == 'hourly' assert args.days ...
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def save_groups(portal, groups, path, f='json', cls=None, **kw): """ Save groups in the portal to disk. """ serializer = _select_serializer(f, cls, **kw) serializer.serialize_groups(groups, path, portal)
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def parse_row(row): """Create an Event object from a data row Args: row: Tuple of input data. Returns: Event object. """ # Ignore either 1 or 2 columns that preceed year if len(row) > 6: row = row[2:] else: row = row[1:] # Remove occasional 'r' or 'x' character prefix from year, # I...
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def vertical_log_binning(p, data): """Create vertical log_binning. Used for peak sale.""" import math import operator index, value = zip(*sorted(data.items(), key=operator.itemgetter(1))) bin_result = [] value = list(value) bin_edge = [min(value)] i = 1 while len(value) > 0: ...
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def get_main_name(ext="", prefix=""): """Returns the base name of the main script. Can optionally add an extension or prefix.""" return prefix + op.splitext(op.basename(__main__.__file__))[0] + ext
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def _grad_block_to_band(op, grad): """ Gradient associated to the ``block_to_band`` operator. """ grad_block = banded_ops.band_to_block( grad, op.get_attr("block_size"), symmetric=op.get_attr("symmetric"), gradient=True ) return grad_block
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def LSTM(nO, nI): """Create an LSTM layer. Args: number out, number in""" weights = LSTM_weights(nO, nI) gates = LSTM_gates(weights.ops) return Recurrent(RNN_step(weights, gates))
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def test_setup_polynomial_wrong_weight_shape(small_data): """Ensures that an exception is raised if input weights and data are different shapes.""" weights = np.ones(small_data.shape[0] + 1) with pytest.raises(ValueError): _algorithm_setup._setup_polynomial(small_data, weights=weights)
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def test_mse_multiple_hidden_units(): """Test the MSE loss w/ 2 hidden units.""" _check_ae(MSE_MAX_SCORE, hidden_units=(2,))
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def get_token(host, port, headers, auth_data): """Return token for a user. """ url = api_url(host, port, '/Users/AuthenticateByName') r = requests.post(url, headers=headers, data=auth_data) return r.json().get('AccessToken')
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def generateDateTime(s): """生成时间""" dt = datetime.fromtimestamp(float(s)/1e3) time = dt.strftime("%H:%M:%S.%f") date = dt.strftime("%Y%m%d") return date, time
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def get_activation_function(): """ Returns tf.nn activation function """ return ACTIVATION_FUNCTION
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def doi_and_title_from_citation(citation): """ Gets the DOI from a plaintext citation. Uses a search to CrossRef.org to retrive paper DOI. Parameters ---------- citation : str Full journal article citation. Example: Senís, Elena, et al. "CRISPR/Cas9‐mediated genome ...
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def prep_ciphertext(ciphertext): """Remove whitespace.""" message = "".join(ciphertext.split()) print("\nciphertext = {}".format(ciphertext)) return message
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def setup_sample_file(base_filename, args, num_threads=1): """ Return a sample data file, the ancestors file, a corresponding recombination rate (a single number or a RateMap), a prefix to use for files, and None """ gmap = args.genetic_map sd = tsinfer.load(base_filename + ".samples") anc ...
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def main(): """Runs dir().""" call = PROCESS_POOL.submit(call_dir) while True: if call.done(): result = call.result().decode() print("Results: \n\n{}".format(result)) return result
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def bacthing_predict_SVGPVAE_rotated_mnist(test_data_batch, vae, svgp, qnet_mu, qnet_var, aux_data_train): """ Get predictions for test data. See chapter 3.3 in Casale's paper. This version supports batching in prediction pipeline (contrary to function predict_SVGP...
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async def async_setup_entry(hass: HomeAssistant, entry: ConfigEntry): """ Set up Strava Home Assistant config entry initiated through the HASS-UI. """ hass.data.setdefault(DOMAIN, {}) # OAuth Stuff try: implementation = await config_entry_oauth2_flow.async_get_config_entry_implementati...
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def normalize_boxes(boxes: List[Tuple], img_shape: Union[Tuple, List]) -> List[Tuple]: """ Transform bounding boxes back to yolo format """ img_height = img_shape[1] img_width = img_shape[2] boxes_ = [] for i in range(len(boxes)): x1, y1, x2, y2 = boxes[i] width = x2 - x1 ...
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def _make_reference_filters(filters, ref_dimension, offset_func): """ Copies and replaces the reference dimension's definition in all of the filters applied to a dataset query. This is used to shift the dimension filters to fit the reference window. :param filters: :param ref_dimension: :param...
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def test_division(): """ Divide two units. """ pc_cgs = cm_per_pc km_cgs = cm_per_km # Create symbols pc_sym = Symbol("pc", positive=True) km_sym = Symbol("km", positive=True) s_sym = Symbol("s", positive=True) # Create units u1 = Unit("pc") u2 = Unit("km * s") u3...
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def detect(): """ Detects the shell the user is currently using. The logic is picked from Docker Machine https://github.com/docker/machine/blob/master/libmachine/shell/shell.go#L13 """ shell = os.getenv("SHELL") if not shell: return None if os.getenv("__fish_bin_dir"): re...
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def test_sanity_pass_declarative(ini_settings, dbsession): """See database sanity check understands about relationships and don't deem them as missing column.""" engine = engine_from_config(ini_settings, 'sqlalchemy.') conn = engine.connect() trans = conn.begin() Session = sessionmaker(bind=engine...
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def load_plane_dataset(name, num_points, flip_axes=False): """Loads and returns a plane dataset. Args: name: string, the name of the dataset. num_points: int, the number of points the dataset should have, flip_axes: bool, flip x and y axes if True. Returns: A Dataset object...
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def get_toxic(annotated_utterance, probs=True, default_probs=None, default_labels=None): """Function to get toxic classifier annotations from annotated utterance. Args: annotated_utterance: dictionary with annotated utterance, or annotations probs: return probabilities or not default: d...
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def compute_energy_lapkmode(X,C,l,W,sigma,bound_lambda): """ compute Laplacian K-modes energy in discrete form """ e_dist = ecdist(X,C,squared =True) g_dist = np.exp(-e_dist/(2*sigma**2)) pairwise = 0 Index_list = np.arange(X.shape[0]) for k in range(C.shape[0]): tmp=np.asa...
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def set_openid_cookie(response, openid): """Utility method to consistently set the openid cookie.""" print 'SETTING openid cookie to: %s' % openid response.set_cookie('openid', openid, expires=(datetime.datetime.now() + datetime.timedelta(days=3650)), # expires in 10 year...
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def calc_2d_wave_map(wave_grid, x_dms, y_dms, tilt, oversample=2, padding=10, maxiter=5, dtol=1e-2): """Compute the 2D wavelength map on the detector. :param wave_grid: The wavelength corresponding to the x_dms, y_dms, and tilt values. :param x_dms: the trace x position on the detector in DMS coordinates. ...
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def is_pipeline_variable(var: object) -> bool: """Check if the variable is a pipeline variable Args: var (object): The variable to be verified. Returns: bool: True if it is, False otherwise. """ # Currently Expression is on top of all kinds of pipeline variables # as well as P...
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def scan(infile: str = 'scanner_domains.txt', outfile: str = 'scanner_log.txt', signature: str = 'None'): """Scans an input list for metadata and, optionally, for the presence of a given signature and sends the results to be written to a file. :param infile: An optional string containing the path to the in...
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def export_data(): """Exports data to a file""" data = {} data['adgroup_name'] = request.args.get('name') if data['adgroup_name']: data['sitelist'] = c['adgroups'].find_one({'name':data['adgroup_name']}, {'sites':1})['sites'] return render_template("export.html", data=data)
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def thresh_bin(img, thresh_limit=60): """ Threshold using blue channel """ b, g, r = cv2.split(img) # mask = get_salient(r) mask = cv2.threshold(b, 50, 255, cv2.THRESH_BINARY_INV)[1] return mask
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def get_aux(): """Get the entire auxiliary stack. Not commonly used.""" @parser def g(c: Cursor, a: Any): return a, c, a return g
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def _destupidize_dict(mylist): """The opposite of _stupidize_dict()""" output = {} for item in mylist: output[item['key']] = item['value'] return output
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def test_J5(i): """ Test a property of J from result 2 of the paper with a log base """ d = SD([1 / i] * i) d.set_base('e') assert J(d) == pytest.approx((i - 1) * (np.log(i) - np.log(i - 1)))
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def print_on_stderr(msg, *param): """Print msg on stderr""" print(msg.format(*param), file=sys.stderr)
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def equipment_add(request, type_, id_=None): """Adds an equipment.""" template = {} if request.method == 'POST': form = EquipmentForm(request.POST) if form.is_valid(): form.save(request.user, id_) return redirect('settings_equipment') template['form'] = fo...
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def sync_app(search_app, batch_size=None, post_batch_callback=None): """Syncs objects for an app to ElasticSearch in batches of batch_size.""" model_name = search_app.es_model.__name__ batch_size = batch_size or search_app.bulk_batch_size logger.info(f'Processing {model_name} records, using batch size {...
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def _parse_text(val, **options): """ :return: Parsed value or value itself depends on 'ac_parse_value' """ if val and options.get('ac_parse_value', False): return parse_single(val) return val
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async def test_zeroconf_host_already_exists(hass: HomeAssistant) -> None: """Test hosts already exists from zeroconf.""" config_entry = MockConfigEntry( domain=DOMAIN, data={ "host": "1.1.1.1", "name": "Envoy", "username": "test-username", "passwo...
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def test_get_networkx_graph(dummy_project): """test_get_networkx_graph.""" dummy_project.get_networkx_graph() # TODO # assert...
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def output_path(model, model_set): """Return path to model output directory Parameters ---------- model : str model_set : str """ path = model_path(model, model_set=model_set) return os.path.join(path, 'output')
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def create_balcony_ungrouped(bm, faces, prop): """Make a balcony on each face selection""" for f in faces: f.select = False if not valid_ngon(f): ngon_to_quad(bm, f) normal = f.normal.copy() split_faces = create_balcony_split(bm, f, prop) for f in sp...
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def get_rotation_matrix(rotation_angles): """Get the rotation matrix from euler's angles Parameters ----- rotation_angles: array-like or list Three euler angles in the order [sai, theta, phi] where sai = rotation along the x-axis theta = rotation along the y-axis phi = r...
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