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def read_conf_file_interface(config_name): """ Get interface settings. @param config_name: Name of WG interface @type config_name: str @return: Dictionary with interface settings @rtype: dict """ conf_location = WG_CONF_PATH + "/" + config_name + ".conf" with open(conf_location, 'r'...
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def test_basic_reliable_data_transfer(): """Basic test: Check that when you run server and client starter code that the input file equals the output file """ # Can you think of how you can test this? Give it a try! pass
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def add_to_history(media, watched_at=None): """Add a :class:`Movie`, :class:`TVShow`, or :class:`TVEpisode` to your watched history. :param media: The media object to add to your history :param watched_at: A `datetime.datetime` object indicating the time at which this media item was viewed ...
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def book_transformer(query_input, book_dict_input): """grabs the book and casts it to a list""" sample_version = versions_dict.versions_dict() query_input[1] = query_input[1].replace('[', '').replace(']', '').lstrip().rstrip().upper() for i in list(book_dict_input.keys()): result = re.search(i, ...
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def custom_response(message, status, mimetype): """handle custom errors""" resp = Response(json.dumps({"message": message, "status_code": status}), status=status, mimetype=mimetype) return resp
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def demo(): """ Let the user play around with the standard scene using programmatic instructions passed directly to the controller. The environment will be displayed in a graphics window. The user can type various commands into the graphics window to query the scene and control the grasper. Typ...
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def embed_network(input_net, layers, reuse_variables=False): """Convolutional embedding.""" n_layers = int(len(layers)/3) tf.logging.info('Number of layers: %d' % n_layers) # set normalization and activation functions normalizer_fn = None activation_fn = tf.nn.softplus tf.logging.info('Softplus activati...
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def write_pair(readID, read1, read2, fh_out_R1, fh_out_R2): """Write paired reads to two files""" fh_out_R1.write("@%s\n%s\n+\n%s\n" % (readID + "/1", read1[0], read1[1])) fh_out_R2.write("@%s\n%s\n+\n%s\n" % (readID + "/2", read2[0], read2[1])) pass
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def sample_variance(sample1, sample2): """ Calculate sample variance. After learn.co """ n_1, n_2 = len(sample1), len(sample2) var_1, var_2 = variance(sample1), variance(sample2) return (var_1 + var_2)/((n_1 + n_2)-2)
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def dwritef2(obj, path): """The dwritef2() function writes the object @p obj to the Python pickle file whose path is pointed to by @p path. Non-existent directories of @p path are created as necessary. @param obj Object to write, as created by e.g. dpack() @param path Path of output file @return Path...
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def extract_test_zip(pattern, dirname, fileext): """Extract a compressed zip given the search pattern. There must be one and only one matching file. arg 1- search pattern for the compressed file. arg 2- name of the output top-level directory. arg 3- a list of search patterns for the sour...
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def test_imageprocessor_read(): """Test the Imageprocessor.""" # Test with 4 channels transform_sequence = [ToPILImage('RGBA')] p = ImageProcessor(transform_sequence) img_out = p.apply_transforms(test_input) assert np.array(img_out).shape == (678, 1024, 4) # Test with 3 channels transf...
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def app(*tokens): """command function to add a command for an app with command name.""" apps_handler.add(*tokens)
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def test_ant(): """ target_files = [ "tests/apache-ant/main/org/apache/tools/ant/types/ArchiveFileSet.java", "tests/apache-ant/main/org/apache/tools/ant/types/TarFileSet.java", "tests/apache-ant/main/org/apache/tools/ant/types/ZipFileSet.java" ] """ ant_dir = "/home/ali/Deskt...
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def calculate_area(geometry): """ Calculate geometry area :param geometry: GeoJSON geometry :return: the geometry area """ coords = get_coords_from_geometry( geometry, ["Polygon", "MultiPolygon"], raise_exception=False ) if get_input_dimensions(coords) >= 4: areas = l...
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def read_prb(file): """ Read a PRB file and return a ProbeGroup object. Since PRB do not handle contact shape then circle of 5um are put. Same for contact shape a dummy tip is put. PRB format do not contain any information about the channel of the probe Only the channel index on device is give...
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def alt_credits(): """ Route for alt credits page. Uses json list to generate page body """ alternate_credits = tasks.json_list(os.path.join(pathlib.Path(__file__).parent.absolute(),'static/alt_credits.json')) return render_template('alt_credits.html',title='collegeSMART - Alternative College Credits',alt_c...
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def CreateNode(parent, node_type, position, wx_id): """ Create an instance of a node associated with the specified name. :param parent: parent of the node object (usually a wx.Window) :param node_type: type of node from registry - the IDName :param position: default position for the node :param wx_...
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def decode_json_content(content): """ Decodes a given string content to a JSON object :param str content: content to be decoded to JSON. :return: A JSON object if the string could be successfully decoded and None otherwise :rtype: json or None """ try: return json.loads(content) if c...
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def plot_dist(noise_feats, label=None, ymax=1.1, color=None, title=None, save_path=None): """ Kernel density plot of the number of noisy features included in explanations, for a certain number of test samples """ if not any(noise_feats): # handle special case where noise_feats=0 noise_feat...
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def simple_simulate(choosers, spec, nest_spec, skims=None, locals_d=None, chunk_size=0, custom_chooser=None, log_alt_losers=False, want_logsums=False, estimator=None, trace_label=None, trace_choice_na...
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def state(predicate): """DBC helper for reusable, simple predicates for object-state tests used in both preconditions and postconditions""" @wraps(predicate) def wrapped_predicate(s, *args, **kwargs): return predicate(s) return wrapped_predicate
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def dpp(kernel_matrix, max_length, epsilon=1E-10): """ Our proposed fast implementation of the greedy algorithm :param kernel_matrix: 2-d array :param max_length: positive int :param epsilon: small positive scalar :return: list """ item_size = kernel_matrix.shape[0] cis = np...
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def adjust_image_resolution(data): """Given image data, shrink it to no greater than 1024 for its larger dimension.""" inputbytes = cStringIO.StringIO(data) output = cStringIO.StringIO() try: im = Image.open(inputbytes) im.thumbnail((240, 240), Image.ANTIALIAS) # co...
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def timing_function(): """ There's a better timing function available in Python 3.3+ Otherwise use the old one. TODO: This could be a static analysis at the top of the module """ if sys.version_info[0] >= 3 and sys.version_info[1] >= 3: return time.monotonic() else: return t...
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async def test_volume_down(mock_device, heos): """Test the volume_down command.""" await heos.get_players() player = heos.players.get(1) with pytest.raises(ValueError): await player.volume_down(0) with pytest.raises(ValueError): await player.volume_down(11) mock_device.register( ...
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def parse_date(txt): """ Returns None or parsed date as {h, m, D, M, Y}. """ date = None clock = None for word in txt.split(' '): if date is None: try: date = datetime.strptime(word, "%d-%m-%Y") continue except ValueError: ...
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def log_success(msg): """ Log success message :param msg: Message to be logged :return: None """ print("[+] " + str(msg)) sys.stdout.flush()
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def diff_configurations(model_config, bench_config, model_bundle, bench_bundle): """ Description Args: model_config: a dictionary with the model configuration data bench_config: a dictionary with the benchmark configuration data model_bundle: a LIVVkit model bundle object be...
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def update_statvar_dcids(statvar_list: list, config: dict): """Given a list of statvars, generates the dcid for each statvar after accounting for dependent PVs. """ for d in statvar_list: ignore_props = get_dpv(d, config) dcid = get_statvar_dcid(d, ignore_props=ignore_props) d['N...
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def _extract_archive(file_path, path='.', archive_format='auto'): """Extracts an archive if it matches tar, tar.gz, tar.bz, or zip formats. Arguments: file_path: path to the archive file path: path to extract the archive file archive_format: Archive format to try for extracting the file....
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def calc_angle(m, n): """ Calculate the cosθ, where θ is the angle between 2 vectors, m and n. """ if inner_p_s(m, n) == -1: print('Error! The 2 vectors should belong on the same space Rn!') elif inner_p_s(m,n) == 0: print('The cosine of the two vectors is 0, so th...
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def Seuil_var(img): """ This fonction compute threshold value. In first the image's histogram is calculated. The threshold value is set to the first indexe of histogram wich respect the following criterion : DH > 0, DH(i)/H(i) > 0.1 , H(i) < 0.01 % of the Norm. In : img : ipl Image : image to treated ...
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def convert_numpy(file_path, dst=None, orient='row', hold=False, axisf=False, *arg): """ Extract an array of data stored in a .npy file or DATABLOCK Parameters --------- file_path : path (str) Full path to the file to be extracted. dst : str Full path to t...
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def index(): """Every time the html page refreshes this function is called. Checks for any activity from the user (setting an alarm, deleting an alarm, or deleting a notification) :return: The html template with alarms and notifications added """ notification_scheduler.run(blocking=False) ...
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def team_6_adv(): """ Team 6's refactored chapter. Originally by lovelle, refactored by lovelle. :return: None """ global dead direction = input("Which direction would you like to go? [North/South/East/West] ") if direction == "East": # Good choice print() prin...
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def do_upgrade_show(cc, args): """Show software upgrade details and attributes.""" upgrades = cc.upgrade.list() if upgrades: _print_upgrade_show(upgrades[0]) else: print('No upgrade in progress')
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def check_icinga_should_run(state_file: str) -> bool: """Return True if the script should continue to update the state file, False if the state file is fresh enough.""" try: with open(state_file) as f: state = json.load(f) except Exception as e: logger.error('Failed to read Icing...
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def ln_new_model_to_gll(py, new_flag_dir, output_dir): """ make up the new gll directory based on the OUTPUT_MODEL. """ script = f"{py} -m seisflow.scripts.structure_inversion.ln_new_model_to_gll --new_flag_dir {new_flag_dir} --output_dir {output_dir}; \n" return script
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def compare_tuple(Procedure, cfg): """Validate the results using a tuple """ profile = DummyData() tp = {} for v in profile.keys(): if isinstance(profile[v], ma.MaskedArray) and profile[v].mask.any(): profile[v][profile[v].mask] = np.nan profile.data[v] = profile[v].d...
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def deserialize_item(item: dict): """Deserialize DynamoDB item to Python types. Args: item: item to deserialize Return: deserialized item """ return {k: DDB_DESERIALIZER.deserialize(v) for k, v in item.items()}
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def good_result(path_value, pred, source=None, target_path=''): """Constructs a JsonFoundValueResult where pred returns value as valid.""" source = path_value.value if source is None else source return jp.PathValueResult(pred=pred, source=source, target_path=target_path, path_value=pat...
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def add_task(task_name): """Handles the `add_task` command. Syntax: `add_task <task_name>` Function: register a new task in TASK_NAME_CACHE Precondition on argument `task_name`: - `task_name` is non-empty and is registered in global object task_keys as the the input validation has already been ...
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def bot_properties(bot_id): """ Return all available properties for the given bot. The bot id should be available in the `app.config` dictionary. """ bot_config = app.config['BOTS'][bot_id] return [pd[0] for pd in bot_config['properties']]
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def find_path(ph_tok_list, dep_parse, link_anchor, ans_anchor, edge_dict, ph_dict): """ :param dep_parse: dependency graph :param link_anchor: token index of the focus word (0-based) :param ans_anchor: token index of the answer (0-based) :param link_category: the category of the current focus link ...
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def get_theme_section_directories(theme_folder:str, sections:list = []) -> list: """Gets a list of the available sections for a theme Explanation ----------- Essentially this function goes into a theme folder (full path to a theme), looks for a folder called sections and returns a list of all the ...
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def download_video_url( video_url: str, pipeline: PipelineContext, destination="%(title)s.%(ext)s", progress=ProgressMonitor.NULL, ): """Download a single video from the .""" config = pipeline.config logger = logging.getLogger(__name__) logger.info("Starting video download from URL: %s"...
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def get_block_name(source): """Get block name version from source.""" url_parts = urlparse(source) file_name = url_parts.path extension = file_name.split(".")[-1] new_path = file_name.replace("." + extension, "_block." + extension) new_file_name = urlunparse( ( url_parts.s...
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def int_to_symbol(i): """ Convert numeric symbol or token to a desriptive name. """ try: return symbol.sym_name[i] except KeyError: return token.tok_name[i]
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def test_iron_skillet(g): """ Test the "iron-skillet" snippet """ sc = g.build() test_stack = 'snippets' test_snippets = ['all'] push_test(sc, test_stack, test_snippets)
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def write_radius_pkix_cd_manage_trust_infile(policy_json, roles, trust_infile_path): """Write the input file for radius_pkix_cd_manage_trust.py.""" role_list = roles.split(",") ti_file_lines = [] for role in role_list: for policy_role in policy_json["roles"]: if policy_role["name"] =...
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def debugger(parser, token): """ Activates a debugger session in both passes of the template renderer """ pudb.set_trace() return DebuggerNode()
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def extra_init(app): """Extra blueprint initialization that requires application context.""" if 'header_links' not in app.jinja_env.globals: app.jinja_env.globals['header_links'] = [] # Add links to 'header_links' var in jinja globals. This allows header_links # to be read by all templates in th...
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def get_openmm_energies(system_pdb, system_xml): """ Returns decomposed OPENMM energies for the system. Parameters ---------- system_pdb : str Input PDB file system_xml : str Forcefield file in XML format """ pdb = simtk.openmm.app.PDBFile(system_pdb) ff_xml_...
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def cranimp(i, s, m, N): """ Calculates the result of c_i,s^dag a_s acting on an integer m. Returns the new basis state and the fermionic prefactor. Spin: UP - s=0, DOWN - s=1. """ offi = 2*(N-i)-1-s offimp = 2*(N+1)-1-s m1 = flipBit(m, offimp) if m1<m: m2=flipBit(m1, offi) if m2>m1: prefactor = prefac...
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def _can_beeify(): """ Determines if the random chance to beeify has occured """ return randint(0, 12) == 0
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def test_relax_parameters_vol_shape(init_relax_parameters): """Test volume and shape relaxation combinations.""" del init_relax_parameters.relax.positions massager = ParametersMassage(init_relax_parameters) parameters = massager.parameters[_DEFAULT_OVERRIDE_NAMESPACE] assert parameters.isif == 6
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def p_for_header(p): """ for_header : for_simple | for_complex """ p[0] = p[1]
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def get_object_classes(db): """return a list of all object classes""" list=[] for item in classinfo: list.append(item) return list
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def load_arviz_data(dataset=None, data_home=None): """Load a local or remote pre-made dataset. Run with no parameters to get a list of all available models. The directory to save to can also be set with the environement variable `ARVIZ_HOME`. The checksum of the dataset is checked against a hardco...
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def get_ax(rows=1, cols=1, size=8): """Return a Matplotlib Axes array to be used in all visualizations in the notebook. Provide a central point to control graph sizes. Change the default size attribute to control the size of rendered images """ _, ax = plt.subplots(rows, cols, figsize=(size...
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def prepare_ablation_from_config(config: Mapping[str, Any], directory: str, save_artifacts: bool): """Prepare a set of ablation study directories.""" metadata = config['metadata'] optuna_config = config['optuna'] ablation_config = config['ablation'] evaluator = ablation_config['evaluator'] eval...
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def spin_coherent(j, theta, phi, type='ket'): """Generates the spin state |j, m>, i.e. the eigenstate of the spin-j Sz operator with eigenvalue m. Parameters ---------- j : float The spin of the state. theta : float Angle from z axis. phi : float Angle from x axis...
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def vgg_upsampling(classes, target_shape=None, scale=1, weight_decay=0., block_name='featx'): """A VGG convolutional block with bilinear upsampling for decoding. :param classes: Integer, number of classes :param scale: Float, scale factor to the input feature, varing from 0 to 1 :param target_shape: 4D...
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def show_toolbar(request): """Determine if toolbar will be displayed.""" return settings.DEBUG
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def compute_metrics(logits, labels, weights): """Compute summary metrics.""" loss, weight_sum = compute_weighted_cross_entropy(logits, labels, weights) acc, _ = compute_weighted_accuracy(logits, labels, weights) metrics = { 'loss': loss, 'accuracy': acc, 'denominator': weight_sum, } return...
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def test_wild080_wild080_v1_xml(mode, save_output, output_format): """ Consistency of governing type declarations between locally-declared elements and lax wildcards in a content model No violation of Element Declarations Consistent with a skip wildcard """ assert_bindings( schema="saxon...
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def test_try_decorator(): """Test try and log decorator.""" # for pydocstyle @try_decorator("oops", default_return="failed") def fn(): raise Exception("expected") assert fn() == "failed"
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def start_session(web_session=None): """Starts a SQL Editor Session Args: web_session (object): The web_session object this session will belong to Returns: A dict holding the result message """ new_session = SqleditorModuleSession(web_session) result = Response.ok("New SQL Edit...
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def show_box(box_data): """from box_data produce a 3D image of surfaces and display it""" use_color_flag=True reverse_redshift_flag=True (dimx,dimy,dimz)=box_data.shape print box_data.shape mycolor='black-white' if use_color_flag: mycolor='blue-red' mycolor='RdBu' #need to set color ...
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async def error_middleware(request: Request, handler: t.Callable[[Request], t.Awaitable[Response]]) -> Response: """logs an exception and returns an error message to the client """ try: return await handler(request) except Exception as e: logger.exception(e) return json_response(...
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def init_mobility_accordion(): """ Initialize the accordion for mobility tab. Args: None Returns: mobility_accordion (object): dash html.Div that contains individual accordions """ accord_1 = init_accordion_element( title="Mobility Index", id='id_mobility_index', ...
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def per_image_whiten(X): """ Subtracts the mean of each image in X and renormalizes them to unit norm. """ num_examples, height, width, depth = X.shape X_flat = X.reshape((num_examples, -1)) X_mean = X_flat.mean(axis=1) X_cent = X_flat - X_mean[:, None] X_norm = np.sqrt( np.sum( X_cent * X...
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def test_is_read_values_any_allowed_cdf_single( cursor, make_user_roles, new_cdf_forecast, other_obj): """That that a user can (and can not) perform the specified action""" info = make_user_roles('read_values', other_obj, True) authid = info['user']['auth0_id'] obj = new_cdf_forecast(org=info['o...
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def fill_defaults(data, vals) -> dict: """Fill defaults if source is not present""" for val in vals: _name = val['name'] _type = val['type'] if 'type' in val else 'str' _source = val['source'] if 'source' in val else _name if _type == 'str': _default = val['default']...
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def crossValPlot(skf,classifier,X_,y_): """Code adapted from: """ X = np.asarray(X_) y = np.asarray(y_) tprs = [] aucs = [] mean_fpr = np.linspace(0, 1, 100) f,ax = plt.subplots(figsize=(10,7)) i = 0 for train, test in skf.split(X, y): probas_ = cl...
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def delete_product(info): """* """ # get objectid import pdb; pdb.set_trace() params = 'where={"name": "%s"}' % info['name'] res = requests.get(CLASSES_BASE_URL + 'products', headers=RAW_HEADERS, params=params) if res.status_code == 200: record = json.loads(res...
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def static_shuttle_between(): """ Route endpoint to show real shuttle data within a certain time range at once. Returns: rendered website displaying all points at once. Example: http://127.0.0.1:5000/?start_time=2018-02-14%2015:40:00&end_time=2018-02-14%2016:02:00 """ start_tim...
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def read_data(inargs, infiles, ref_cube=None): """Read data.""" clim_dict = {} trend_dict = {} for filenum, infile in enumerate(infiles): cube = iris.load_cube(infile, gio.check_iris_var(inargs.var)) if ref_cube: branch_time = None if inargs.branch_times[filenum] == 'default...
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async def create_account(*, user): """ Open an account for a user Save account details in json file """ with open("mainbank.json", "r") as f: users = json.load(f) if str(user.id) in users: return False else: users[str(user.id)] = {"wallet": 0, "bank": 0} with open...
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def commonpath(paths): """Given a sequence of path names, returns the longest common sub-path.""" if not paths: raise ValueError('commonpath() arg is an empty sequence') if isinstance(paths[0], bytes): sep = b'\\' altsep = b'/' curdir = b'.' else: sep = '\\' ...
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def test_set_container_uid_and_pod_fs_gid(): """ Test specification of the simplest possible pod specification """ assert api_client.sanitize_for_serialization(make_pod( name='test', image='jupyter/singleuser:latest', cmd=['jupyterhub-singleuser'], port=8888, run_...
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def reshape(x, shape): """ Reshape array to new shape This is a parallelized version of the ``np.reshape`` function with the following limitations: 1. It assumes that the array is stored in `row-major order`_ 2. It only allows for reshapings that collapse or merge dimensions like ``(1, 2...
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def update_optimizer_lr(optimizer, lr): """ 为了动态更新learning rate, 加快训练速度 :param optimizer: torch.optim type :param lr: learning rate :return: """ for group in optimizer.param_groups: group['lr'] = lr
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async def test_kafka_provider_metric_unavailable(aiohttp_server, loop): """Test the resilience of the Kafka provider when the name of a metric taken from a Metric resource is not found. """ columns = ["id", "value"] rows = [["first_id", [0.42, 1.0]]] kafka = await aiohttp_server(make_kafka("my_t...
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def test_create_extended(setup_teardown_file): """Create an extended dataset.""" f = setup_teardown_file[3] grp = f.create_group("test") dset = grp.create_dataset('foo', (63,)) assert dset.shape == (63,) assert dset.size == 63 dset = f.create_dataset('bar', (6, 10)) assert dset.shape =...
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def clean_json(data_type: str): """deletes all the data from the json corresponding to the data type. data_type is a string corresponding to key of the dictionary "data_types", where the names of json files for each data type are stored.""" # check if correct data type if not data_type in json_files...
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def get_state(module_instance, incremental_state, key_postfix): """ Helper for extracting incremental state """ if incremental_state is None: return None full_key = _get_full_key(module_instance, key_postfix) return incremental_state.get(full_key, None)
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def get_lenovo_urls(from_date, to_date): """ Extracts URL on which the data about vulnerabilities are available. :param from_date: start of date interval :param to_date: end of date interval :return: urls """ lenovo_url = config['vendor-cve']['lenovo_url'] len_p = LenovoMainPageParser(l...
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def PrintTabular(rows, header): """Prints results in LaTeX tabular format. rows: list of rows header: list of strings """ s = r'\hline ' + ' & '.join(header) + r' \\ \hline' print(s) for row in rows: s = ' & '.join(row) + r' \\' print(s) print(r'\hline')
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def get_object_attributes(DirectoryArn=None, ObjectReference=None, ConsistencyLevel=None, SchemaFacet=None, AttributeNames=None): """ Retrieves attributes within a facet that are associated with an object. See also: AWS API Documentation Exceptions :example: response = client.get_object_at...
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def normalize_batch_in_training(x, gamma, beta, reduction_axes, epsilon=1e-3): """ Computes mean and std for batch then apply batch_normalization on batch. # Arguments x: Input tensor or variable. gamma: Tensor by which to scale the input. beta: Tens...
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def supercell_scaling_by_target_atoms(structure, min_atoms=60, max_atoms=120, target_shape='sc', lower_search_limit=-2, upper_search_limit=2, verbose=False): """ Find a the supercell scaling matrix that gives the most cubic supercell fo...
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def itemAPIEndpoint(categoryid): """Return page to display JSON formatted information of item.""" items = session.query(Item).filter_by(category_id=categoryid).all() return jsonify(Items=[i.serialize for i in items])
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def graph_response_function( func: Callable, start: int = 0.001, stop: int = 1000, number_of_observations: int = 1000000, ): """ Generates a graph for the passed in function in the same style as the log based graphs in the assignment. Args: func: The function to ...
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def command(settings_module, command, bin_env=None, pythonpath=None, *args, **kwargs): """ run arbitrary django management command """ da = _get_django_admin(bin_env) cmd = "{0} {1} --settings={2}".format(da, command, settings_module) if pythonpat...
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def read_input(fpath): """ Read an input file, and return a list of tuples, each item containing a single line. Args: fpath (str): File path of the file to read. Returns: list of tuples: [ (xxx, xxx, xxx) ] """ with open(fpath, 'r') as f: data = [...
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def get_parquet_lists(): """ Load all .parquet files and get train and test splits """ parquet_files = [f for f in os.listdir( Config.data_dir) if f.endswith(".parquet")] train_files = [f for f in parquet_files if 'train' in f] test_files = [f for f in parquet_files if 'test' in f] ...
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def test_masked_values(): """Test specific values give expected results""" data = np.zeros((2, 2), dtype=np.float32) data = np.ma.masked_array(data, [[True, False], [False, False]]) input_cube = set_up_variable_cube( data, name="snow_fraction", units="1", standard_grid_metadata="uk_ens", ) ...
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def find_level(key): """ Find the last 15 bits of a key, corresponding to a level. """ return key & LEVEL_MASK
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