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def hex_to_rgb(col_hex): """Convert a hex colour to an RGB tuple.""" col_hex = col_hex.lstrip('#') return bytearray.fromhex(col_hex)
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import torch def second_order_loss_with_ic(neural_network, a, b, g, ic, ic_prime, domain_lower_bound=0, domain_upper_bound=1, num_points=10): """Computes loss for a given NN Parameters ---------- nerual_network : torch.nn.Module Neural network used in trial solution a: function Fu...
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def timeit(get_ipython, fn, *args, **kwargs): """Invoke the IPython timeit line magic. Determined how this worked via: >>> import dis >>> >>> def capture_line_magic(fn): ... timeit_result = %timeit -o -q fn() ... return timeit_result ... >>> dis.dis(capture_line_magic) ...
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def encode(to_be_encoded): """ Run-length encodes a string :param to_be_encoded: string to be run-length encoded :return: run-length encoded string """ last_seen = None last_seen_count = 0 to_be_encoded_as_list = list(to_be_encoded) encoded_str_as_list = list() for c in to_be_e...
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def page_query_with_skip(query, skip=0, limit=100, max_count=None, lazy_count=False): """Query data with skip, limit and count by `QuerySet` Args: query(mongoengine.queryset.QuerySet): A valid `QuerySet` object. skip(int): Skip N items. limit(int): Maximum number of items returned. ...
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import os def create_output_dir_for_chromosome(output_dir, chr_name): """ Create an internal directory inside the output directory to dump choromosomal summary files :param output_dir: Path to output directory :param chr_name: chromosome name :return: New directory path """ path_to_dir = o...
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def nvt_cv(e1, e2, kt, volume = 1.0): """Compute (specific) heat capacity in NVT ensemble. C_V = 1/kT^2 . ( <E^2> - <E>^2 ) """ cv = (1.0/(volume*kt**2))*(e2 - e1*e1) return cv
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def rectangle_to_cv_bbox(rectangle_points): """ Convert the CVAT rectangle points (serverside) to a OpenCV rectangle. :param tuple rectangle_points: Tuple of form (x1,y1,x2,y2) :return: Form (x1, y1, width, height) """ # Dimensions must be ints, otherwise tracking throws a exception return (int(rectangle_points[...
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def dijkstra(g, source): """Return distance where distance[v] is min distance from source to v. This will return a dictionary distance. g is a Graph object. source is a Vertex object in g. """ unvisited = set(g) distance = dict.fromkeys(g, float('inf')) distance[source] = 0 whi...
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def calc_gross_profit_margin(revenue_time_series, cogs_time_series): # Profit and Cost of Goods Sold - i.e. cost of materials and director labour costs """ Gross Profit Margins Formula Notes ------------ Profit Margins = Total revenue - Cost of goods sold (COGS) / revenue ...
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import subprocess def untracked_files(hg_dir): """untracked files in an hg repository""" process = subprocess.Popen(['hg', 'st'], stdout=subprocess.PIPE, stderr=subprocess.PIPE, cwd=hg_dir) stdout, stderr = proces...
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import re def translate_years(val): """Convert X ('YY-'YY) into an array""" if val.find("-") > 0: tokens = re.findall("[0-9]+", val) one = int(tokens[0]) two = int(tokens[1]) one = (1900 + one) if one > 50 else (2000 + one) two = (1900 + two) if two > 50 else (2000 + tw...
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def np_slice(matrix, axes={}): """Slices a matrix along specific axes""" ans = [slice(None)] * len(matrix.shape) for key, value in axes.items(): ans[key] = slice(*value) return matrix[tuple(ans)]
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import itertools def determineQATaskName(qaTaskBaseName, f, isPtHard): """ Determine the task name based on a wide variety of possible names. Since the task name varies depending on what input objects are included, we need to guess the name. Args: qaTaskBaseName (str): Base name of the QA task wit...
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def sfill(x, max_chars=10, justify='>'): """Fill a string with empty characters""" return '{}' \ .format('{:' + justify + str(max_chars) + '}') \ .format(x)
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import asyncio def event_loop() -> asyncio.AbstractEventLoop: """Returns an event loop for the current thread""" return asyncio.get_event_loop_policy().get_event_loop()
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def set_discover_targets(discover: bool) -> dict: """Controls whether to discover available targets and notify via `targetCreated/targetInfoChanged/targetDestroyed` events. Parameters ---------- discover: bool Whether to discover available targets. """ return {"method": "Target....
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import subprocess def execute_pylint(filename): """Execute a pylint process and collect it's output """ process = subprocess.Popen( ["pylint", filename], stdout=subprocess.PIPE, stderr=subprocess.PIPE, universal_newlines=True ) stout, sterr = process.communicate() ...
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def notas(*nt, sit=False): """ -> Função para analisar notas e situação de vários alunos. :param nt: recebe uma ou mais notas dos alunos. :param sit: valor opcional, mostrando ou não a situação do aluno(True/False). :return: dicionário com várias informações sobre a situação da turma. """ pr...
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import os def get_subid_sesid_mask_dti(subject_id, caps_directory, fwhm, compartment_name, threshold): """ This is to extract the base_directory for the DataSink including participant_id and sesion_id in CAPS directory, also the tuple_list for substitution :param subject_id: :return: base_directory fo...
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def _get_binary(value, bits): """ Provides the given value as a binary string, padded with zeros to the given number of bits. :param int value: value to be converted :param int bits: number of bits to pad to """ # http://www.daniweb.com/code/snippet216539.html return ''.join([str((value >> y) & 1) for...
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import os def Usable(entity_type, entity_ids_arr): """Can run with Python files only""" fil_nam = entity_ids_arr[0] # But probably it is not enough and we should try to open it. fil_ext = os.path.splitext(fil_nam)[1] # Maybe this can be generalised to survol_python.pyExtensions return fil_e...
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def count_null_values_for_each_column(spark_df): """Creates a dictionary of the number of nulls in each column Args: spark_df (pyspark.sql.dataframe.DataFrame): The spark dataframe for which the nulls need to be counted Returns: dict: A dictionary with column name as key and null count as ...
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def __version_compare(v1, v2): """ Compare two Commander version versions and will return: 1 if version 1 is bigger 0 if equal -1 if version 2 is bigger """ # This will split both the versions by '.' arr1 = v1.split(".") arr2 = v2.split(".") n = len(arr1) m =...
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import re def get_hits(pattern: re.Pattern, body: str, context_len: int = 15): """Applies search, and returns a string for every match with some additional context""" matches = pattern.finditer(body) res = [] for match in matches: if match is None: continue start = max(...
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def create_vocab_item(vocab_class, row, row_key): """gets or create a vocab entry based on name and name_reverse""" try: name_reverse = row[row_key].split("|")[1] name = row[row_key].split("|")[0] except IndexError: name_reverse = row[row_key] name = row[row_key] temp_ite...
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def sentence_position(i, size): """different sentence positions indicate different probability of being an important sentence""" normalized = i*1.0 / size if 0 < normalized <= 0.1: return 0.17 elif 0.1 < normalized <= 0.2: return 0.23 elif 0.2 < normalized <= 0.3: return...
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import os def _add_eutils_api_key(url): """Adds an eutils api key to the query. Args: url (str): The query url without the api key. Returns: str: The query url with the api key, if one is stored in the environment variable ``NCBI_API_KEY``, otherwise it is unaltered. """ ...
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def _restore_config_data(dct: dict, delete: dict, defaults: dict) -> dict: """delete nested dict keys, restore from defaults.""" for k, v in delete.items(): # restore from defaults if present, or just delete the key if k in dct: if k in defaults: dct[k] = defaults[k] ...
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import json def _load_repo_configs(path): """ load repository configs from the specified json file :param path: :return: list of json objects """ with open(path) as f: return json.loads(f.read())
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def get_if_all_equal(data, default=None): """Get value of all are the same, else return default value. Arguments: data {TupleTree} -- TupleTree data. Keyword Arguments: default {any} -- Return if all are not equal (default: {None}) """ if data.all_equal(): return da...
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def sdp_abs(f, u, O, K): """Make all coefficients positive in `K[X]`. """ return [ (monom, K.abs(coeff)) for monom, coeff in f ]
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def convert_compartment_id(modelseed_id, format_type): """ Convert a compartment ID in ModelSEED source format to another format. No conversion is done for unknown format types. Parameters ---------- modelseed_id : str Compartment ID in ModelSEED source format format_type : {'modelseed...
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def _box_area(boxes): """copy from torchvision.ops.boxes.box_area(). """ return (boxes[:, 2] - boxes[:, 0]) * (boxes[:, 3] - boxes[:, 1])
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import torch def dirichlet_common_loss(alphas, y_one_hot, lam=0): """ Use Evidential Learning Dirichlet loss from Sensoy et al. This function follows after the classification and multiclass specific functions that reshape the alpha inputs and create one-hot targets. :param alphas: Predicted para...
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def get_windows(y, cv): """Generate windows""" train_windows = [] test_windows = [] for i, (train, test) in enumerate(cv.split(y)): train_windows.append(train) test_windows.append(test) return train_windows, test_windows
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def merge_dicts(base, updates): """ Given two dicts, merge them into a new dict as a shallow copy. Parameters ---------- base: dict The base dictionary. updates: dict Secondary dictionary whose values override the base. """ if not base: base = dict() if not u...
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def get_hashes_from_file_manifest(file_manifest): """ Return a string that is a concatenation of the file hashes provided in the bundle manifest entry for a file: {sha1}{sha256}{s3_etag}{crc32c} """ sha1 = file_manifest.sha1 sha256 = file_manifest.sha256 s3_etag = file_manifest.s3_etag c...
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from typing import List import sqlite3 def list_quotes(*, conn) -> List[sqlite3.Row]: """ Retrieves a list of quotes """ cur = conn.cursor() cur.execute("select id, text, source, topic from quotes order by id desc") return cur.fetchall()
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def lowerColumn(r, c): """ >>> lowerColumn(5, 4) [(5, 4), (6, 4), (7, 4), (8, 4)] """ x = range(r, 9) y = [c, ] * (9-r) return zip(x, y)
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def summarize_filetypes(dir_map): """ Given a directory map dataframe, this returns a simple summary of the filetypes contained therein and whether or not those are supported or not ---------- dir_map: pandas dictionary with columns path, extension, filetype, support; this is the ouput o...
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import re def show_ansi(text): """Make ANSI control sequences visible.""" replacements = { '\033[1A': '{up1}', '\033[2A': '{up2}', '\033[1B': '{down1}', '\033[1L': '{ins1}', '\033[2L': '{ins2}', '\033[1M': '{del1}', '\033[31m': '{red}', '\033[32m...
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def staticTunnelTemplate(user, device, ip, aaa_server, group_policy): """ Template for static IP tunnel configuration for a user. This creates a unique address pool and tunnel group for a user. :param user: username id associated with static IP :type user: str :param device:...
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def build_cdf_sampling_list(results, rank_field_to_sort='WEIGHTED_RANK_RND'): """ :param results: a list of results in dictionary template :param rank_field_to_sort: For example ['AVERAGE_RANK_RND', 'RANK_BING', 'WEIGHTED_RANK_RND'] :return: a list containing of length sum of rank_field_to_sort * [resul...
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def merge_all_elements(*elements): """ Merge all the elements in to a list in a flatten structure and they are sorted by pages and y coordinate. :param elements: :return: """ element_list = [] for element in elements: if len(element) > 0: for obj in element: ...
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from typing import Tuple def _build_label_attribute_names( should_include_handler: bool, should_include_method: bool, should_include_status: bool, ) -> Tuple[list, list]: """Builds up tuple with to be used label and attribute names. Args: should_include_handler (bool): Should the `handler...
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def constructQuery(column_lst, case_id): """ Construct the query to public dataset: aketari-covid19-public.covid19.ISMIR Args: column_lst: list - ["*"] or ["column_name1", "column_name2" ...] case_id: str - Optional e.g "case1" Returns: query object """ # Public dataset ...
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import os def find_python_sources(src_dir, modules=('sage',)): """ Find all currently installed files INPUT: - ``src_dir`` -- string. The root directory for the sources. - ``module`` -- list/tuple/iterable of strings (default: ``('sage',)``). The top-level directory name(s) in ``src_dir``...
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def batch_unflatten(x, shape): """Revert `batch_flatten`.""" return x.reshape(*shape[:-1], -1)
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import sys def get_alpha(val, verbose=False, getscale=False): """ Get an alpha level associated with this amount :param val: the value :param verbose: more output :param getscale: get the alpha scale regardless of val :return: the alpha level, a number between 0 and 1 """ alphalevels ...
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def prepend_batch_seq_axis(tensor): """ CNTK uses 2 dynamic axes (batch, sequence, input_shape...). To have a single sample with length 1 you need to pass (1, 1, input_shape...) This method reshapes a tensor to add to the batch and sequence axis equal to 1. :param tensor: The tensor to be reshaped ...
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def shorten_trace_data_paths(trace_data): """ Shorten the paths in trace_data to max 3 components :param trace_data: :return: """ for i, (direction, _script, method, path, db) in enumerate(trace_data): path = "/".join(path.rsplit('/')[-3:]) # only keep max last 3 components trac...
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def dms2dd(d, m, s): """ Convert degrees minutes seconds to decimanl degrees :param d: degrees :param m: minutes :param s: seconds :return: decimal """ return d+((m+(s/60.0))/60.0)
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def transpose_dataframe(df): # pragma: no cover """ Check if the input is a column-wise Pandas `DataFrame`. If `True`, return a transpose dataframe since stumpy assumes that each row represents data from a different dimension while each column represents data from the same dimension. If `False`, re...
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def load_single_line_str(s): """validates that a string is single line""" s = str(s) if '\n' in s: raise ValueError('String value "{}" contains newline character. HINT: consider using ' 'yaml ">-" operator for multi-line strings'.format(s)) return s
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def write_data(f, grp, name, data, type_string, options): """ Writes a piece of data into an open HDF5 file. Low level function to store a Python type (`data`) into the specified Group. .. versionchanged:: 0.2 Added return value `obj`. Parameters ---------- f : h5py.File Th...
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import math def get_bg(bg_reader): """ Asks user to enter his/her blood glucose reading. Sanitizes user input, echos read value back to user, and returns it to caller. If user input cannot be parsed, function return nan. :param bg_reader: Function responsible for reading information from user inpu...
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def find_collection(client, dbid, id): """Find whether or not a CosmosDB collection exists. Args: client (obj): A pydocumentdb client object. dbid (str): Database ID. id (str): Collection ID. Returns: bool: True if the collection exists, False otherwise. """ ...
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import json def load_dicefile(file): """ Load the dicewords file from disk. """ with open(file) as f: dicewords_dict = json.load(f) return dicewords_dict
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def get_soup_search(x, search): """Searches to see if search is in the soup content and returns true if it is (false o/w).""" if len(x.contents) == 0: return False return x.contents[0] == search
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def EVLACalModel(Source, CalDataType=" ", CalFile=" ", CalName=" ", CalClass=" ", CalSeq=0, CalDisk=0, \ CalNfield=0, CalCCVer=1, CalBComp=[1], CalEComp=[0], CalCmethod=" ", CalCmode=" ", CalFlux=0.0, \ CalModelFlux=0.0, CalModelSI=0.0,CalModelPos=[0.,0.], CalModelPar...
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def get_interface(): """ get the interface name """ interface = input("Enter the interface name: ") return interface
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import torch def smooth_l1_loss(bbox_preds, bbox_targets, bbox_inside_weights, bbox_outside_weights, sigma=3.0): """as caffe implementation, the bbox_preds and bbox_targets should be a 2-dim torch Var [[x1, y1, x2, y2], [x1, y1, x2, y2],]. """ sigma2 = sigma ** 2 diff = bbox_preds - bbox_targ...
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def line_or_step_plotly(interval_label): """ For a given interval_label, forecast_type determine any kwargs for the plot. """ if 'instant' in interval_label: plot_kwargs = dict() elif interval_label == 'beginning': plot_kwargs = dict(line_shape='hv') elif interval_label == 'e...
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def split(children): """Returns the field that is used by the node to make a decision. """ field = set([child.predicate.field for child in children]) if len(field) == 1: return field.pop()
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def is_continuous_subset(tensor_slice, tensor_shape, row_major=True): """ Figure out whether a slice is a continuous subset of the tensor. Args: slice_shape (Sequence(slice)): the shape of the slice. tensor_shape (Sequence(int)): the shape of the tensor. row_major (bool): whether th...
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def multiplyPaulis(a,b): """" A simple helper function for multiplying Pauli Matrices. Returns ab. :param: a: an int in [0,1,2,3] representing [I,X,Y,Z] :param: b: an int in [0,1,2,3] representing [I,X,Y,Z] """ out = [[0,1,2,3],[1,0,3,2],[2,3,0,1],[3,2,1,0]] return out[int(a)][int(b)]
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import io def load_instructions(filename): """ Function to read a string in from a text file and return that string. :param filename: The name of the text file as a string :return: The contents of the text file as a string """ filepath = ".\\" + filename try: file = open(filepath) ...
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def reverseList(head): """ 递归 反转 链表 :type head: ListNode :rtype: ListNode """ if not head : return None if not head.next : return head last = reverseList(head.next) head.next.next = head head.next = None return last
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def reverse_str(input_str): """ Reverse a string """ return input_str[::-1]
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from sys import version def healthz(): """ Healthcheck """ return (f'{__package__} {version}', 200)
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import random def single_introduction(end): """Single return a single introduction day for the introduction_days parameter""" return [random.randint(0,end)]
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def drop_suffix_from_str(item: str, suffix: str, divider: str = '') -> str: """Drops 'suffix' from 'item' with 'divider' in between. Args: item (str): item to be modified. suffix (str): suffix to be added to 'item'. Returns: str: modified str. """ suffix = ''.join([suf...
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def recode(posterior, levels, data, original_data, condition): """ This is really a replace operation on a dataframe. """ for column in levels + ['combined_condition']: if column not in posterior.columns: continue if column == 'combined_condition': original_columns = con...
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def length_ok_input_items(items): """Helper for union_line_attr_list_fld() --- Takes a list of items (grabbed from the attribute structure) and ensures that the user input-items per markdown line are of length 1. This check is needed for Sigma, G_in, and G_out for TMs. However...
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def anzahl_ziffern(integer): """gibt die Anzahl der Ziffern einer Zahl zurück""" string = str(integer) return len(string)
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def _read_node(f, scale): """Read a node card. The node card contains the following: === ===== === ====== === === 1 ID IV KC === ===== === ====== === === X Y Z ICF GTYPE NDF CONFIG CID PSP === ===== === ====== === === """ line = f.readline() entries = [line[i : i...
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def environmentfunction(f): """This decorator can be used to mark a function or method as environment callable. This decorator works exactly like the :func:`contextfunction` decorator just that the first argument is the active :class:`Environment` and not context. """ f.environmentfunction = Tr...
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def Torsor(cls): """ Torsor(cls) A parametric class. Implements a set of labels equipped with a free and transitive action of a group `cls`. This means that the only operations available are the addition and subtraction of x∊`cls` from a given element of a torsor. By default, the label...
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def extract_intervals(request_history): """ Extract the continuous (start, end) intervals during which network IO happend. Summing the duration of those intervals gives the total API call time as perceived by the end-user (taking into account parallel requests using concurrency features). """ i...
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import numpy def _msa_i_op( lulc_array, distance_to_infrastructure, out_pixel_size, msa_i_primary_table, msa_i_other_table): """Calculate msa infrastructure. Bin distance_to_infrastructure values according to rules defined in msa_parameters.csv. Parameters: lulc_array (array)...
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def get_model_columns(sm,model_index): """Return the data columns of the galaxy model (given by index) :param sm: Sky model in human readable format (final hopefuly) :param model_index: The index of the galaxy model """ ID = sm[model_index][:,0]; RA = sm[model_index][:,1]; RA_err ...
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def match3(g1, s, guesses_number): """ Give the guesses_number that the user has. """ if g1 in s: print("You have " + str(guesses_number) + " guesses left.") else: guesses_number = guesses_number - 1 if guesses_number == 0: pass else: # print("...
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def calc_time(times): """ Takes a list of times in HHMM-HHMM format, and returns the difference between the first and second times """ cumt = 0 for t in times: t1, t2 = t.split('-') tm = (int(t2[2:]) - int(t1[2:])) % 60 th = 60 * ((int(t2[:2]) - int(t1[:2])) % 24) ...
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def compute_reporting_interval(item_count): """ Computes for a given number of items that will be processed how often the progress should be reported """ if item_count > 100000: log_interval = item_count // 100 elif item_count > 30: log_interval = item_count // 10 else: ...
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def _preprocess_graphql_string(graphql_string): """Apply any necessary preprocessing to the input GraphQL string, returning the new version.""" # HACK(predrag): Workaround for graphql-core issue, to avoid needless errors: # https://github.com/graphql-python/graphql-core/issues/98 return g...
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import sys import os def _user_data_dir(appname="BrazilDataCube"): """Return full path to the user-specific data dir for this application.""" if sys.platform == "win32": const = "CSIDL_LOCAL_APPDATA" path = os.path.normpath(_get_win_folder(const)) path = os.path.join(path, appname) ...
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import argparse def create_parser(): """ Command Line parser for serialize_convention Input: metadata convention tsv file """ # create the argument parser parser = argparse.ArgumentParser( description=__doc__, formatter_class=argparse.RawDescriptionHelpFormatter ) parser.add_a...
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def merge_sort(elements): """ Use the simple merge sort algorithm to sort the :param elements. :param elements: a sequence in which the function __get_item__ and __len__ were implemented, as well as the slice and add operations. :return: the sorted elements in increasing order """ length = l...
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import argparse def parameter_parser(): """ A method to parse up command line parameters. By default it gives an embedding of the Bitcoin OTC dataset. The default hyperparameters give a good quality representation without grid search. Representations are sorted by node ID. """ parser = argpar...
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def _sign(x): """ returns sign function (as float) if x is complex then use numpy.sign() """ sgn_int = x and (1, -1)[x < 0] return 1.0 * sgn_int
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def get_yn_input(prompt): """ Get Yes/No prompt answer. :param prompt: string prompt :return: bool """ answer = None while answer not in ["y", "n", ""]: answer = (input(prompt + " (y/N): ") or "").lower() or "n" return answer == "y"
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import os def is_readable(path): """ Check if a given path is readable by the current user. :param path: The path to check :returns: True or False """ if os.access(path, os.F_OK) and os.access(path, os.R_OK): # The path exists and is readable return True # The path does ...
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def form_clean_components(rmsynth_pixel, faraday_peak, rmclean_gain): """Extract a complex-valued clean component. Args: rmsynth_pixel (numpy array): the dirty RM data for a specific pixel. faraday_peak (int): the index of the peak of the clean component. rmclean_gain (float): loop gain for cle...
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from os.path import dirname, join, exists import re def parse_requirements(fname='requirements.txt'): """ Parse the package dependencies listed in a requirements file but strips specific versioning information. CommandLine: python -c "import setup; print(setup.parse_requirements())" """ ...
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import re import json def fix_hunspell_json(badjson_path='en_us.json', goodjson_path='en_us_fixed.json'): """Fix the invalid hunspellToJSON.py json format by inserting double-quotes in list of affix strings Args: badjson_path (str): path to input json file that doesn't properly quote goodjson_pat...
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import re def xstr(s): """ Converts null string to 'N/A' """ if s is None: return 'N/A' try: # UCS-4 highpoints = re.compile(u'[U00010000-U0010ffff]') except re.error: # UCS-2 highpoints = re.compile(u'[uD800-uDBFF][uDC00-uDFFF]') return s.encode('utf-8')
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def get_unique_values(df, column): """ Get unique strings from a column. Numeric or other types of values will error out. """ unique_values = list(set(list(df[[column]][column]))) return [value.lower() for value in unique_values]
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import torch def get_device(): """Return default cuda device if available, cpu otherwise.""" return torch.device('cuda' if torch.cuda.is_available() else 'cpu')
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def get_mpaxos_result(results): """ Returns a Results object from the 'results' list in which the protocol was Multi-Paxos. """ return list(filter(lambda r: r.is_mpaxos(), results))
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