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from os.path import dirname, join def get_version(relpath): """read version info from file without importing it""" for line in open(join(dirname(__file__), relpath)): if '__version__' in line: if '"' in line: # __version__ = "0.9" return line.split('"')[1] ...
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def effort_required_to_make_a_sale(): """ Real Name: Effort Required to Make a Sale Original Eqn: 4 Units: Hours/Person Limits: (0.0, 50.0) Type: constant Subs: None This is the amount of time the agent must spend (on average) with a lead (high or low value, for now) to make a s...
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def get_admin_url(page, lang=None): """Return the admin URL for a specific language.""" return page.get_admin_url()
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import zlib import struct def createGZStream(buffer): """ Manually create a GZ stream using the zlib library - the built in python one seems to create incompatable GZ streams thankfully, the file format is quite simple. See: http://www.gzip.org/zlib/rfc-gzip.html """ compressedBuffer = zlib.compress(buffer, 6);...
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def RemoveAllJetPtCuts(proc): """ Remove default pt cuts for all jets set in jets_cff.py """ proc.finalJets.cut = "" # 15 -> 10 proc.finalJetsAK8.cut = "" # 170 -> 170 proc.genJetTable.cut = "" # 10 -> 8 proc.genJetFlavourTable.cut = "" # 10 -> 8 proc.genJetAK8Table.c...
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import importlib def validate_external_function(possible_function): """ Validate string representing external function is a callable Args: possible_function: string "pointing" to external function Returns: None/Callable: None or callable function Raises: N/A # noqa ...
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def flatten(obj, keys): """ flattens the dictionary object specified in the argument :param obj: object to be flattened :param keys: list of keys which are not flattened by default :return: reference of flattened object """ for key in keys: values = obj[key] if values: ...
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def std_problem_3(x): """Standard start point x0 = (0.5, 0.5, ...)""" n = len(x) f = [0.0] * n for i in range(n - 1): f[i] = x[i] * x[i + 1] - 1 f[n - 1] = x[n - 1] * x[0] - 1 return f
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from pathlib import Path def get_mirror_path(path_from: Path, path_to: Path) -> Path: """Return the mirror path from a path to another one. The mirrored path is determined from the current working directory (cwd) and the path_from. The path_from shall be under the cwd. The mirrored relative path is t...
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def load_requirements(): """ Load requirements.txt file into a list. """ with open('requirements.txt') as f: required = f.read().split('\n') if len(required) == 1 and required[0] == '': required = [] return required
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def _translate_keys(inst): """ Coerces into dictionary format, excluding all model attributes save for id and name """ return dict(server=dict(id=inst['id'], name=inst['display_name']))
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def L001_fix(segment, raw_stack, **kwargs): """ We only care about the segment the preceeding segments """ # We only trigger on newlines if segment.raw == '\n' and raw_stack[-1].name == 'whitespace': # If we find a newline, which is preceeded by whitespace, then bad deletions = [] id...
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def find_Align(name, all_files_list, img_suffix = '.png'): """Find a .Align file matching (same except for file type) an image file. Parameters ---------- name : str Image file name (relative; without full path). all_files_list : list[str] A list of all files in a directory where .A...
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def htk_int_to_float(value): """ Converts an integer value (time in 100ns units) to floating point value (time in seconds)... """ return float(value) / 10000000.0
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from typing import Counter def count_polymer_pairs(counts: Counter, rules: dict) -> Counter: """Count the number of element pairs in the next step for the polymer.""" new_step_counts: Counter = Counter() for pair, pair_count in counts.items(): if pair_count > 0: for new_pair in rul...
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def parse_name(name): """ Parse name of the form 'namespace_name.unit_name' into tuple ('namespace_name', 'unit_name'). """ if '.' not in name: raise ValueError('`func` parameter must be provided or name must be "namespace_name.unit_name"') name_components = name.split('.') if len(name_component...
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def loglinear_rule_weight(feature_dict, feature_weights_dict): """ Compute log linear feature weight of a rule by summing the products of feature values and feature weights. :param feature_dict: Dictionary of features and their values :param feature_weights_dict: Dictionary of features and their weights...
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import os def convert_affine(unwarped_brain, mean_func, out_fsl_file): """Converts fsl-style Affine registration into ANTS compatible itk format Parameters ---------- unwarped_brain : structural reference image mean_func : image that was coregistered out_fsl_file : fsl-style coregistration ma...
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def get_view(name): # noqa: E501 """get_view Retrieve view details # noqa: E501 :param name: Name of the view :type name: str :rtype: ListView """ return 'do some magic!'
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import time def elapsedTreeTimeExtractor(elapsedTimesDict, stepsDict): """elapsedTreeTimeExtractor() takes a newickTree, a list of all the present cycle directories, and the parentNode and returns the total amount of machine time spent on the tree including all branches. """ prgTimesDict = {} ...
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def folder_from_egtb_name(name: str) -> str: """ Determine EGTB folder (Xvy_pawn(less|ful)) from EGTB name :param name: EGTB name """ l, r = name.split('v') prefix = f'{len(l)}v{len(r)}' suffix = '_pawnful' if ('P' in l or 'P' in r) else '_pawnless' return prefix + suffix
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import inspect def parental_funct_name(): """ Return the current functions' name. Used to allow better snippets generation. Source: https://www.stefaanlippens.net/python_inspect/ :return: """ return inspect.stack()[2][3]
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from typing import Dict def get_noise_cost_coeff(noises: Dict[int, float], db_costs: Dict[int, float]) -> float: """Returns noise cost coefficient.""" if not noises: return 0.0 db_distance_cost = sum([db_costs[db] * length for db, length in noises.items()]) total_length = sum(noises.values()) ...
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def is_among(value, *possibilities): """ Ensure that the method that has been used for the request is one of the expected ones (e.g., GET or POST). """ for possibility in possibilities: if value == possibility: return True raise Exception('A different request value was encoun...
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def butterfly_mul_np(ABCDs, input_): """Product of block 2x2 diagonal matrices, implemented in Numpy. Parameters: ABCDs: list of the ABCDs factors as used in Block2x2DiagProduct, in numpy array. we accept real and complex. input_: input_ vector as numpy array, (batch_size, n) ...
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import time import requests def make_page_request(url, sol, camera, api_key, page): """Make one page request from NASA API.""" time.sleep(0.4) params = { 'sol': sol, 'camera': camera, 'api_key': api_key, 'page': page, } response = requests.get(url, params=params) ...
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import ast def tryeval(val): """ Convert to the proper type, e.g. '87' -> 87 :param val: string :return: mixed """ try: val = ast.literal_eval(val) except (SyntaxError, ValueError) as ex: pass return val
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import torch def householder_matrix(v, size=None): """ householder_matrix(Tensor, size=None) -> Tensor Arguments v: Tensor of size [Any,] size: `int` or `None`. The size of the resulting matrix. size >= v.size(0) Output I - 2 v^T * v / v*v^T: Tensor of size [size, ...
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def multiply(numbers): """ Write a Python function to multiply all the numbers in a list. multiply([1,2,3,-4]) -> -24 """ cummulator = 1 for i in numbers: cummulator *= i return cummulator
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def balanced_error(refrxn, refeq, rrat, m=0.03, p=10.0): """ :param refrxn: :param refeq: :param rrat: :param m: minimum permitted weight for a point :param p: multiples of abs(refeq) above refeq to which zero-line in head is displaced :return: """ one = float(1) q = one if rrat...
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def count_first_word(str_list): """Count the first word of each string in the list. Args: str_list: List of strings Returns: {"word": count, ...} """ ret_count = dict() for phrase in str_list: words = phrase.split("-") ret_count[words[0]] = ret_count.get(words[...
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def kw_pop(*args, **kwargs): """ Treatment of kwargs. Eliminate from kwargs the tuple in args. """ arg = kwargs.copy() key, default = args if key in arg: return arg, arg.pop(key) else: return arg, default
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import os def readAtLeast(fd, bytecount): """Read 'bytecount' bytes from file descriptor fd. raise if we can't.""" inputData = os.read(fd, bytecount) while len(inputData) < bytecount: newData = os.read(fd, bytecount - len(inputData)) assert len(newData) != 0 inputData += newData ...
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def add_article(str_): """Appends the article 'the' to a string if necessary. """ if str_.istitle() or str_.find('the ') > -1: str_ = str_ else: str_ = 'the ' + str_ return str_
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def merge_cards_based_on_label(cards): """Merge cards with common label.""" cards_dict = {} for card in cards: label = card.get('label') if label in cards_dict: links = cards_dict[label].links + card.links cards_dict[label].update(dict(links=links)) cards_dict[label] = cards_dict.pop(label) else: c...
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def extract_ipi(ipi_number): """IPI NUMBER must have 11 characters otherwise paddle left 0 till len == 11 or empty if not ipi number is supplied""" return ipi_number if ipi_number == '' else f"{int(ipi_number):011}"
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import shlex import subprocess def check_dput_host(dput_host): """ Check spcified host is defined in dput.cf :rtype: bool :return: ``True`` is dput_host is defined :param str dput_host: dput host """ command = '/usr/bin/dput -H' args = shlex.split(command) response = subprocess.c...
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def quantify(iterable, pred=bool): """Count the number of items in iterable for which pred is true.""" return sum(1 for item in iterable if pred(item))
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def windows_low_high_to_int(windows_int_low, windows_int_high): """Returns an int given the low and high integers""" return (windows_int_high << 32) + windows_int_low
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import time def filename_stamped(filename, number): """Create a time-stamped filename""" time_str = time.strftime("%Y%m%d-%H%M%S") return '{}_{}_{}'.format(filename, number, time_str)
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def say_hello() -> str: """Say hello function.""" return "Hello"
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def parse_hash_id(seq): """Return a list of protein numbers within the given string. Example ------- "#10,41,43,150#" -> ["10", "41", "43", "150"] """ ans = seq.strip("#").split(",") return ans
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def shorten_dfs(dfs, plot_start=None, plot_end=None): """Shorten all incidence DataFrames. All DataFrames are shortened to the shortest. In addition, if plot_start is given all DataFrames start at or after plot_start. Args: dfs (dict): keys are the names of the scenarios, values are the incide...
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def nt2over_gn_groupings(nt): """Return the number of grouping ``over'' a note. For beamings trees this is the number of beams over each note. Args: nt (NotationTree): A notation tree, either beaming tree or tuplet tree. Returns: list: A list of length [number_of_leaves], with integer...
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import os def get_current_folder_file(file_type): """ 通过文件类型,获取到当前目录下的文件 filename = get_current_folder_file('apk') :param file_type: :return: """ # 当前目录下所有的文件 all_files = os.listdir('.') # 满足要求的文件列表 target_files = [] for file in all_files: if file.split('.')[-1] == fi...
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def valid_2(password, lower, upper, letter): """ Takes in a password and checks if it is valid """ if password[lower] == letter and password[upper] != letter: return 1 elif password[lower] != letter and password[upper] == letter: return 1 else: return 0
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def center_crop(data, shape): """ Apply a center crop to the input real image or batch of real images. Args: data (torch.Tensor): The input tensor to be center cropped. It should have at least 2 dimensions and the cropping is applied along the last two dimensions. sh...
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import copy import random def select_random_genes(parent_genes): """there are supposed to be 2 parents""" child_genes = [] for i in range(len(parent_genes[0])): child_genes.append(copy.deepcopy(random.choice([parent_genes[0][i], parent_genes[1][i]]))) for i in range(0, len(parent_genes[1]) - len(parent_genes[0]...
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def apply_concept_similarity_one(logits, *_, **__): """ Return logits * 1 """ return logits
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def fetch_method(obj, method): """ fetch object attributes by name Args: obj: class object method: name of the method Returns: function """ try: return getattr(obj, method) except AttributeError: raise NotImplementedError(f"{obj.__class__} has not impl...
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import uuid def q_name(string: str) -> str: """ Return string representation of uuid5 of *string*. Creates unique identifiers. """ if not isinstance(string, str): raise TypeError(f"Parameter string: Expected type str, got type {type(string)}.") return str(uuid.uuid5(uuid.NAMESPACE_DN...
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def job_spec(): """Job spec dict.""" job_spec = { "experiment": "experiment", "docker_img": "image", "cmd": "cmd", "prettified_cmd": "prettified_cmd", "env_vars": {}, "workflow_workspace": "workflow_workspace", "job_name": "job_name", "cvmfs_mounts...
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def extend_dict(dict_1: dict, dict_2: dict) -> dict: """Assumes that dic_1 and dic_2 are both dictionaries. Returns the merged/combined dictionary of the two dictionaries.""" return {**dict_1, **dict_2}
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import requests def download_zip(url:str, dest_path:str, chunk_size:int = 128)->bool: """Download zip file Downloads zip from the specified URL and saves it to the specified file path. see https://stackoverflow.com/questions/9419162/download-returned-zip-file-from-url Args: url (str): sl...
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import os import argparse def vid_valid(vid): """ Validate the input video file. """ if (not os.path.isfile(vid) or not vid.lower().endswith(('.mp4','.avi'))): raise argparse.ArgumentTypeError( 'Cannot read video file. If the video type cannot be read, ' \ 'ch...
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def trash_file(drive_service, file_id): """ Move file to bin on google drive """ body = {"trashed": True} try: updated_file = drive_service.files().update(fileId=file_id, body=body).execute() print(f"Moved old backup file to bin.") return updated_file except Exception: ...
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import inspect def extract_kwargs(docstring): """Extract keyword argument documentation from a function's docstring. Parameters ---------- docstring: str The docstring to extract keyword arguments from. Returns ------- list of (str, str, list str) str The name of the...
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def get_total_interconnector_violation(model): """Total interconnector violation""" # Total forward and reverse interconnector violation forward = sum(v.value for v in model.V_CV_INTERCONNECTOR_FORWARD.values()) reverse = sum(v.value for v in model.V_CV_INTERCONNECTOR_REVERSE.values()) return forw...
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def absorption_spectrum(spectrum_data): """Takes spectral data of energy eigenvalues and returns the absorption spectrum relative to a state of given index. Calculated by subtracting from eigenenergies the energy of the select state. Resulting negative frequencies, if the reference state is not the ground s...
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import hashlib def Many_Hash(filename): """ calculate hashes for given filename """ with open(filename, "rb") as f: data = f.read() md5 = hashlib.md5(data).hexdigest() sha1 = hashlib.sha1(data).hexdigest() sha256 = hashlib.sha256(data).hexdigest() sha512 = hashlib.sha512(data).hexdiges...
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def grad_likelihood(*X, Y=0, W=1): """Gradient of the log-likelihood of NMF assuming Gaussian error model. Args: X: tuple of (A,S) matrix factors Y: target matrix W: (optional weight matrix MxN) Returns: grad_A f, grad_S f """ A, S = X D = W * (A.dot(S) - Y) ...
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from typing import Sequence from typing import List def chain(items: Sequence, cycle: bool = False) -> List: """Creates a chain between items Parameters ---------- items : Sequence items to join to chain cycle : bool, optional cycle to the start of the chain if True, default: Fals...
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def _ensure_list_of_lists(entries): """Transform input to being a list of lists.""" if not isinstance(entries, list): # user passed in single object # wrap in a list # (next transformation will make this a list of lists) entries = [entries] if not any(isinstance(element, list...
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import os import fnmatch def find_packages(path): """ Recursively find RPM packages in a `path` and return their list """ packages = [] for root, _, filenames in os.walk(path): for filename in fnmatch.filter(filenames, "*.rpm"): if filename.endswith(".src.rpm"): ...
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import platform import os import stat def which(exe): """locate the given executable via the environment, if necessary""" # platform-specific executable checks is_windows = platform.system() == "Windows" if is_windows: exe_check = lambda p: (os.stat(p)[0] & (stat.S_IXUSR | stat.S_IXGRP | stat....
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def get_daily_returns(df): """Compute and return the daily return values.""" daily_returns = df.copy() daily_returns[1:] = (df[1:] / df[:-1].values) - 1 daily_returns.iloc[0] = 0 # set daily returns for row 0 to 0 return daily_returns
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def bitarray2dec(in_bitarray): """ Converts an input NumPy array of bits (0 and 1) to a decimal integer. Parameters ---------- in_bitarray : 1D ndarray of ints Input NumPy array of bits. Returns ------- number : int Integer representation of input bit array. """ ...
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import unicodedata def _is_punctuation(ch): """标点符号类字符判断(全/半角均在此内) 提醒:unicodedata.category这个函数在py2和py3下的 表现可能不一样,比如u'§'字符,在py2下的结果为'So', 在py3下的结果是'Po'。 """ code = ord(ch) return 33 <= code <= 47 or \ 58 <= code <= 64 or \ 91 <= code <= 96 or \ 123 <= code <= 126 or ...
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def set_state_dict(model, state_dict): """Load state dictionary whether or not distributed training was used""" if hasattr(model, "module"): return model.module.load_state_dict(state_dict) return model.load_state_dict(state_dict)
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import re def _parse_line(cpuid, match): """Search a line with the content <match>: <value> in the given StringIO instance and return <value> """ cpuid.seek(0) for l in cpuid.readlines(): m = re.match('^(%s.*):\s+(.+)' % match, l) if m: return (m.group(1), m.group(2).r...
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def other_options(options): """ Replaces None with an empty dict for plotting options. """ return dict() if options is None else options.copy()
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from typing import Optional import os def get_logfile() -> Optional[str]: """Find a Genshin Impact logfile :returns: A logfile path or None if no genshin installation exists """ mihoyo_dir = os.path.expanduser("~/AppData/LocalLow/miHoYo/") for name in ["Genshin Impact", "原神", "YuanShen"]: ...
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def tap(fun, value): """ A function that takes a function and a value, applies the function to the value and returns the value. Complexity: O(k) where k is the complexity of the given function params: fun: the function value: the value returns: the value """ fun(value) ...
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def getMax(data): """ Find the maximum number of steps in the data and the date it was achieved. Parameters: data: Pandas DataFrame containing Apple Health data imported from a .csv file. Return: The row of values for when the maximum number of steps were ac...
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from typing import Any def make_safe(element: Any) -> str: """ Helper function to make an element a string Parameters ---------- element: Any Element to recursively turn into a string Returns ------- str All elements combined into a string """ if isinstance(el...
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import re def demo_id(filename): """Get the demo_number from a test macro""" b1 = re.match('.*/test_demo\d{2}\.py', filename) found = re.findall('.*/test_demo(\d{2})\.py', filename) b2 = len(found) == 1 is_test_file = b1 and b2 assert is_test_file, 'Not a test file: "%s"' % filename return...
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import token import requests def get_repos(): """Finds all public GitLab repositories of authenticated user. Returns: - List of public GitLab repositories. """ url = f'https://gitlab.com/api/v4/projects?visibility=public&owned=true&archived=false' headers = {'Authorization': f'Bearer {token...
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import numpy as np def count_b0s(in_bval, low_bval=5.0): """ Count the number of volumes where b<=low_bval. Args: in_bval (str): bval file. low_bval (Optional[int]): Define the b0 volumes as all volume bval <= lowbval. (Default=5.0) Returns: num_b0s: Number of b0s...
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def read_classification_from_file(filename): """ Return { <filename> : <classification> } dict """ with open(filename, "rt") as f: classification = {} for line in f: key, value = line.split() classification[key] = value return classification
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def all_items(searchqueryset): """Return all items of SearchQuerySet. Args: searchqueryset (SearchQuerySet): QuerySet of search items. Returns: All items in index. """ return searchqueryset.all()
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def truncate(message, limit=500): """ Truncates the message to the given limit length. The beginning and the end of the message are left untouched. """ if len(message) > limit: trc_msg = ''.join([message[:limit // 2 - 2], ' .. ', message[...
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def get_slack_user(user, slack_users): """Return user profile from Slack.""" if hasattr(user, "profile"): if user.profile.slack_api_id: for slack_user in slack_users: if slack_user["id"] == user.profile.slack_api_id: return slack_user return None ...
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import torch def batchmv_cosine_similarity(m, v): """ Computes a cosine similarity between batches of matrices and vectors. 计算批量矩阵和向量之间的余弦相似度 参数:m:一个包含一批矩阵的#维张量 :param m: a #D tensor that contains a batch of matrices 参数:v:一个包含一批矩阵的2维张量 :param v: a 2D tensor that contains a batch of vectors...
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import numpy def simulate_Noise(frequency, times, power=50e3, bchan = None, echan = None, timevariable=False, frequency_variable=False): """ Calculate Noise sqrt(power) as a function of time and frequency :param frequency: (sample frequencies) :param times: sample times (s) :param power: DTV emitted ...
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def findDataStart(lines, delin = ' '): """ Finds the line where the data starts input: lines = list of strings (probably from a data file) delin = optional string, tells how the data would be separated, default is a space (' ') output: i = integer where the data stops being...
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import os def list_files(path): """Returns a list of all non-hidden files in a directory""" return [file for file in os.listdir(path) if os.path.isfile(os.path.join(path, file)) and file[0] != "."]
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import linecache import random def get_verse(filepath, min_len): """ :param filepath: Path to txt-file (e.g. /home/Documents/file.txt or file.txt) :param min_len: Minimum line length :return: A random text line (exclude ones with ':', '=' etc. last character) """ if filepath == '': ret...
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def pa_bbm_hash_mock(url, request): """ Mock for Android autoloader lookup, new site. """ thebody = "http://54.247.87.13/softwareupgrade/BBM/bbry_qc8953_autoloader_user-common-AAL093.sha512sum" return {'status_code': 200, 'content': thebody}
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def _range_check(datarange): """ Utility to check if data range is outside of precision for 3 digit base 256 """ maxrange = 256 ** 3 return datarange > maxrange
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def rotate(wcsprm, rot): """Help method for offset_with_orientation. Set the different rotations in the header.""" #hdr["PC1_1"] =rot[0][0] #hdr["PC1_2"] =rot[1][0] #hdr["PC2_1"]=rot[0][1] #hdr["PC2_2"] =rot[1][1] pc = wcsprm.get_pc() pc_rotated =rot@ pc wcsprm.pc = pc_rotated return...
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import itertools import random def generate_comparison_pairs(condition_datas): """ Generate all stimulus comparison pairs for a condition and return in a random order for a paired comparison test. Parameters ---------- condition_datas: list of dict List of dictionary of condition data as ...
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def alltrue(seq): """ Return *True* if all elements of *seq* evaluate to *True*. If *seq* is empty, return *False*. """ if not len(seq): return False for val in seq: if not val: return False return True
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import locale def _to_str(s, enc=locale.getpreferredencoding()): """Method to convert a bytes into a string based on a local preferred encoding _to_str ======= This method is used to decode a bytes stream into a string based on the location/regional preference. It returns the converted string....
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def test(classifier, data, labels): """ Test a classifier. Parameters ---------- classifier : sklearn classifier The classifier to test. data : numpy array The data with which to test the classifier. labels : numpy array The labels with which to test the the classifier. Returns ...
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def process_form_data(dict_form_data, *args): """ After casting form data to dict, the values become lists. Transform the lists to non-iterables """ new_dict = {} try: for key in dict_form_data.keys(): new_dict[key] = dict_form_data[key][0] except AttributeError: ...
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import os def is_workspace_file(sample_file_path): """ Return if input file is a vivisect workspace, based on file extension :param sample_file_path: :return: True if file extension is .viv, False otherwise """ if os.path.splitext(sample_file_path)[1] == ".viv": return True return ...
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def reverse_complement(s): """Return reverse complement sequence""" ret = '' complement = {"A": "T", "T": "A", "C": "G", "G": "C", "N": "N", "a": "t", "t": "a", "c": "g", "g": "c", "n": "n"} for base in s[::-1]: ret += complement[base] return ret
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def _tuples(key, values): """list of key-value tuples""" return [(key, value) for value in values]
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import random def get_ephemeral_host(): """ Returns a random IP in the 127.0.0.0/24. This decreases the likelihood of races for ports by 255^3. """ res = '127.{}.{}.{}'.format(random.randrange(1, 255), random.randrange(1, 255), rando...
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def _flatten_nodes_betweenness_weights(weighted_nodes): """ Betweenness metrics weights the nodes betweenness. Example result is : [(('systems', 'linear'), 0.30303030303030337), (('systems', 'systems'), 0.257575757575758), ...] The method is to flatten edge betweenness and maximum edge between...
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