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def get_package_names(pyproject): """ Get package names :param dict pyproject: pyproject.toml body. :return: Package names :rtype: list """ package_names = [] for pkg in pyproject["package"]: if pkg["category"] == "main": package_names.append(pkg["name"]) return...
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import random def sim_detections(gt, tpr, fpr): """Simulates detection data for a set of ground truth cluster labels and an annotator with a specified TPR and FPR. Returns an array of with same length as input gt, where 1 indicates the simulated annotator detected a cluster and 0 indicates an undetec...
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def update_csv_data_dict(csv_data, first_column, *other_columns): """ Update a csv dictionary for a given first column :param csv_data: The csv data dictionary to add the row to. :param first_column: The first column of the row to add. :param *other_columns: The further columns of the row to add. ...
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import unittest def run_student_tests(print_feedback=True, show_traces=True, success_required=True): """Run a suite of student submitted tests. Tests must be located in /autograder/source/student_tests/ Args: print_feedback (bool): Print success or failure message s...
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import torch def rotated_box_to_poly(rotated_boxes: torch.Tensor): """ Transform rotated boxes to polygons Args: rotated_boxes (Tensor): (x, y, w, h, a) with shape (n, 5) Return: polys (Tensor): 4 corner points (x, y) of polygons with shape (n, 4, 2) """ cs = torch.cos(rotated_boxe...
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import torch def maybe_cuda(what, use_cuda=True, **kw): """ Moves `what` to CUDA and returns it, if `use_cuda` and it's available. Args: what (object): any object to move to eventually gpu use_cuda (bool): if we want to use gpu or cpu. Returns object: the s...
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import logging def get_logger( log_level=logging.INFO, msg_format="%(asctime)s - %(levelname)s - %(filename)s:%(funcName)s:%(lineno)s" "- %(message)s", cls_name=__name__, ): """ Instantiate a new logger. Args: log_level = One of the log reporting levels defined in the logging modu...
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import os import base64 import re def gen_oauth_nonce(): """ Generate oauth nonce for Twiter API - Get random 32 bytes data - Base64 encode - Pick only word characters """ random = os.urandom(32) encoded = base64.b64encode(random) words = re.sub('[^\w]', '', str(encoded)) return words
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def load_RIRE_ground_truth(file_name): """ Load the point sets defining the ground truth transformations for the RIRE training dataset. Args: file_name (str): RIRE ground truth file name. File format is specific to the RIRE training data, with the actual data expectd to...
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def subdivide(x_1, x_2, n): """Performs the n-th cantor subdivision of the interval (x_1, x_2), a subset [0, 1]""" if n == 0: return [] new_x_1 = 2 * (x_1 / 3) + x_2 / 3 new_x_2 = x_1 / 3 + 2 * (x_2 / 3) return ( subdivide(x_1, new_x_1, n - 1) + [new_x_1, new_x_2] + ...
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import functools def graph_conv_wrapper(func): """ Applies graph convention to a function using pytorch convention """ @functools.wraps(func) def wrapped_func(*args, **kwargs): new_args = [x.permute(0, 3, 1, 2) for x in args] ret = func(*new_args, **kwargs) return ret.permute(0, 2,...
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import os def txt_file_path_list(folder): """Returns sorted list of paths to ~.txt files found in specified folder.""" filenames = os.listdir(folder) txt_files = [] for file in filenames: if file[-3:] == 'txt': txt_files.append(os.path.join(folder, file)) else: ...
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def _get_ref(info: list) -> str: """Get the workspace reference from an info tuple""" return f"{info[6]}/{info[0]}/{info[4]}"
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import re import inspect def parse_pyvars(code: str, frame_nr: int = 2): """Looks through call stack and finds values of variables. Parameters ---------- code : str SuperCollider command to be parsed frame_nr : int, optional on which frame to start, by default 2 (grandparent frame...
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def cli(ctx, q, page=1, page_size=10): """Search for tools in a Galaxy Tool Shed. Output: dictionary containing search hits as well as metadata for the search. For example:: {u'hits': [{u'matched_terms': [], u'score': 3.0, u'tool': {u'description': u'conver...
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def P_f(x): """ Projection onto the free cone (x in R) """ return x
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import itertools def get_mismatches_from_one(sequence, list_let, nb_mis): """ Return all the sequences possible from sequence with mismatch = nb_mis""" nb_let = len(list_let) list_seq_final = [] len_seq = len(sequence) nb = range(len_seq) list_mismatch_place = list(itertools.combinations(nb, n...
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def build_lcp_lr(LCP, n): """Builds LCP-LR dictionary from LCP array""" LCP_LR = {} def _build_lcp_lr(left, right): if left + 1 == right: common_prefix = LCP[right] else: mid = (left + right) // 2 common_prefix = min(_build_lcp_lr(left, mid), _build_lcp_lr(mid, right)) LCP_LR[(left, ...
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def _get_lines(file_obj): """Return all the lines in file_obj.""" return [line.strip() for line in file_obj.readlines()]
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def binary(e): """ @purpose: Returns a binary representation of the integer passed @parameter: e - The integer to be converted to binary @precondition: A positive integer value is passed @postcondition: A list of integers representing binary value of the integer, @Complexity: Best Case: ...
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def cov(C): """ Attributes: C (array-like, dtype=float, shape=(n,n)): Confusion matrix Returns: cons (float): Coverage constraint function value """ return 1 - C[:, 0].sum()
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import os def load_expectation(expectation_file_name, strip=True): # pragma: no cover """Return (unicode) str containing text in *expectation_file_name*. Expectation file path is rooted at tests/expectations. """ thisdir = os.path.dirname(__file__) expectation_file_path = os.path.abspath( ...
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def discovery_topic_is_device_config(topic): """Return True if the discovery topic is device configuration.""" return topic.endswith("config")
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def get_monoalphabetic_decryption(data: str, key: str) -> dict: """ Monoalphabetic cipher. Part for decryption. For decryption (operate with unicode code): c[i] = c[i] - key_code Where key_code = key[0] + key[1] + ... + key[len[key] - 1] (operate with unicode code) The structure of the function is s...
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def replace_value_with_key(s, replace_dict): """In string s values in the dict get replaced with their key""" for key in replace_dict: s = s.replace(replace_dict[key], key) return s
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def markDuplicate(key, idea, oldest_idea_id): """ Mark duplicate. Mark is for statistics purpose. :return: marked key, IDEA """ # If idea is present if idea: # Equality of ID's in tuple and idea, if true mark will be added if oldest_idea_id != idea.id: # Add True mark...
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def METARtemp(val): """convert temp to METAR""" f_temp = float(val) i_temp = int(round(f_temp, 0)) f1_temp = int(round(f_temp * 10., 0)) if i_temp < 0: i_temp = 0 - i_temp m_temp = "M%02i" % (i_temp,) else: m_temp = "%02i" % (i_temp,) if f1_temp < 0: t_temp =...
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def format_class_name(name): """ Formats a string to CapWords. :param name: string to format :type name: str :return: string with the name in CapWords :rtype: str """ fixed_name = name.title().replace("_", "") return fixed_name
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import json def bot_factory(app_client, admin_authorization_header): """ Generate a bot with the specified name and protocol, return its id (user_id) and token. """ def gen(name, protocol): data = { 'name': name, 'protocol': protocol } r = app_client.post('/api/bots', data=json.dum...
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def check_results(candidate_answers, acceptable_answers): """ Return a list containing the ranking of all elements of the list `candidate_answers` which are also in the list of `acceptable_answers`. """ total = 0 for i, answer in enumerate(candidate_answers): for acceptable_answer in...
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def get_attr(d: dict, t: str): """获取字典`d`下的`t`""" try: return d[t] except: return None
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from typing import Union from pathlib import Path import subprocess def is_git_ignored(filename: Union[str, Path]) -> bool: """ Check if file is git-ignored. Supports nested .gitignore files. """ folder = Path(filename).parent filename = Path(filename).name try: p = subprocess.run( ...
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def split_seconds(seconds): """Split seconds into [day, hour, minute, second, ms] `divisor: 1, 24, 60, 60, 1000` `units: day, hour, minute, second, ms` >>> split_seconds(6666666) [77, 3, 51, 6, 0] """ ms = seconds * 1000 divisors = (1, 24, 60, 60, 1000) quotient, result = ...
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import time def wait_on_job(job): """Block until the async job is done.""" while job.status() != 'done': time.sleep(.05) # pragma: no cover return job
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def pkcs7_pad(plaintext: bytes, block_size: int=0x10) -> bytes: """ Pad a message using the byte padding algorithm described in PKCS#7 This padding scheme appends n bytes with value n, with n the amount of padding bytes. The specification describing the padding algorithm can be found here: http...
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def convert_null_to_none(value): """ this is to convert '' or nan to None for a list :param value: list or value :return: value """ if isinstance(value, list): value = [None if x == '' else x for x in value] else: value = None return value
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from datetime import datetime import pytz def get_appropriate_object_from_model(object_set, is_queryset=False): """ Tools: - publish_status = {1: always on, 0: conditionally on, -1: always off, NULL never published} OK - this is how the game is played: Rule 0: only ob...
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def countSelectedPairs(all_selected_idx, print_msg = True, string = 'Major merger cut: '): """ Function to count selected pairs from the list of lists outputted by ball tree @all_selected_idx :: """ count_selected_pairs = 0 for j, mm in enumerate(all_selected_idx): if len(...
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def get_arrival_from_pick(arrivals, pick): """ return arrival corresponding to pick :param arrivals: list of arrivals :type arrivals: list of either obspy.core.event.origin.Arrival or microquake.core.event.origin.Arrival :param pick: P or S pick :type pick: eithe...
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def delete_prefix(prefix: dict, session, fqdn) -> int: """Call API to delete the prefix.""" id = prefix["id"] result = session.delete(f"http://{ fqdn }/api/ipam/prefixes/{ id }/") return result
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def is_pc_router_interface(config_db, pc): """Check if portchannel is a router interface""" pc_interface_table = config_db.get_table('PORTCHANNEL_INTERFACE') for intf in pc_interface_table: if pc == intf[0]: return True return False
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import gzip import json def load_json(filename): """ Load JSON from text file or gzip """ if filename.endswith("gz"): f = gzip.open(filename, "rt") else: f = open(filename, "rt") return json.load(f)
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def get_events(sc): """ Get all event_logs and reverse order to make ascending. """ events = sc.getstatus('event_logs') events.reverse() return events
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import json def load_evaluation(filename): """Load single evaluation file. Adds the filename for reference""" data = None with open(filename) as fin: try: data = json.loads(fin.read()) data['filename'] = filename except json.JSONDecodeError: print(f"Coul...
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import torch def giou_loss(pred, target, weight, avg_factor=None): """GIoU loss. Computing the GIoU loss between a set of predicted bboxes and target bboxes. """ pos_mask = weight > 0 weight = weight[pos_mask].float() if avg_factor is None: avg...
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import torch def quaternion_linear_rotation(input, r_weight, i_weight, j_weight, k_weight, bias=None, quaternion_format=False): """ Applies a quaternion rotation transformation to the incoming data: The rotation W*x*W^t can be replaced by R*x following: https://en.wikipedia.org/wiki/Quaternions_and_s...
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def parse_program(line): """Parse line to tuple with name, weight and list of programs above.""" program, *above = line.split(' -> ') name, weight = program.split() return name, int(weight[1:-1]), above[0].split(', ') if above else []
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import click def networkx_to_dict(ngraph, verbose=True): """Turn the networkx data into a dict structure that can be consumed by the dataviz Note -------- The network data is extracted as follows > xx = G.nodes(data=True) > for x in xx: print(x[1]) ('respiratory tract infections'...
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def namespaceable(request, namespaces, abc): """Return either helper class.""" if request.param == 'main': return namespaces.Namespaceable else: return abc.NamespaceableABC
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def entry_check(entry): """ check if entry is a dict and has a key entry. If list return dict {'entry': entry} :param entry :return: entry_dict """ # print("entry type:", type(entry)) if isinstance(entry, dict): # print("keys:", entry.keys()) if 'entry' in entry: ...
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from typing import Tuple def is_tuple_list_type(t) -> bool: """ Allowed only `Tuple[Type1, ...]` :param t: :return: """ if not hasattr(t, '__origin__'): return False # Python36: List, Python37+: list if not t.__origin__ in (Tuple, tuple): return False return t.__ar...
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import re def check_state_keys(state, keys_regex): """check if keys exists in state using full python paths""" regex = re.compile(keys_regex) for k, v in state.items(): if regex.findall(k): return True return False
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import subprocess def BuildBinary(build_dir, binary_name): """Builds the given binary in the given directory with Ninja. Returns True on success.""" return subprocess.call(["ninja", "-C", build_dir, binary_name]) == 0
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import re def is_drive_letter(path): """Check wheter specified path is a drive letter""" return re.match('^[a-zA-Z]{1}:$', path)
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def convert_fasta_to_string(filename): """Takes a genome FASTA and outputs a string of that genome Args: filename: fasta file Returns: string of the genome sequence """ assert filename.split('.')[-1] == 'fasta' # assert correct file type with open(filename) as f: sequenc...
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def harmean(series, n): """ 调和平均值: 求series在n个周期内的调和平均值 计算方法: harmean(x, 5) = 1 / [(1 / x(1) + 1 / x(2) + 1 / x(3) + 1 / x(4) + 1 / x(5)) / 5] 例: harmean = tafunc.harmean(df["close"], 5) # 求5周期收盘价的调和平均值 注: 1. n包含当前k线 2. 调和平均值与倒数的简单平均值互为倒数 3. 当n为有效值, 但当前的k线数...
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import os def get_files_to_push(local_path, device_path): """Get a list of the file(s) to push. Parameters ---------- local_path : str A path to a local file or directory device_path : str A path to a file or directory on the device Returns ------- local_path_is_dir :...
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def unauthorized(e): """ custom 401 """ return '<h1>hey, you there, no wandering around here</h1>', 401
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def calculate_gc(read): """Returns GC count.""" return (read.lower().count("g") + read.lower().count("c")) / len(read) * 100.0
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def identity(x): """Identity functions, useful as semantic action for rules.""" return x
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def tree_struct_sep(lines): """Separates tree structure from rest of the data. This is done to get an excepted format for the column_parser """ indx = None for line in lines: if line.startswith('; ********'): indx = lines.index(line)+1 break return lines[:indx],...
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def nplus1loader(loadopt, attrs, nested=True): """ N+1 loader for attributes, be it a column or a relationship Give it a list of attributes, of '*' to handle them all. Args: attrs: Currently, only supports '*'. See `nplus1loader_cols()` and `nplus1loader_rels()` for fine-tuning. ...
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import sys def get_evaluator(method, parent): """ Get an evaluator. Parameters ---------- method : str The name of the evaluator. parent : Selector The selector using the evaluator. Returns ------- Evaluator The initialized evaluator. """ return g...
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def pascal_triangle(n): """ Returns a list of lists of integers representing the Pascal’s triangle of n. """ if n <= 0: return [] result = [[1]] while len(result) is not n: tmp = [1] for i in range(len(result[-1]) - 1): tmp.append(result[-1][i] + result[-...
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def dsr_bc(D_eq): """ Beard and Chuang drop shape relationship function. Arguments: D_eq: Drop volume-equivalent diameter (mm) Returns: r: The vertical-to-horizontal drop axis ratio. Note: the Scatterer class expects horizontal to vertical, so you should pass 1/dsr_bc """ ...
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def apps(request): """ Directory to extract files to """ apps = request.config.option.apps return apps.split(',')
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def validate_email_destination(os_mailbox, os_email): """ return True iff O.S. mailbox record is a destination linked to given O.S. email record """ destinations = os_email.get('destinations', None) return os_mailbox['id'] in destinations
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def units_map(param, mm=False): """ Units of parameters """ L = "cm" if mm: L = "mm" if param in ("temps", "Tl", "Tt", "T"): unit = " [mK]" elif param[0] == "I": unit = " [A]" elif ( param[:2] == "r0" or param[0] in ("L", "W", "R", "A") or ...
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def get_sections_in_range(sections, time_range): """get sections in a certain time range (e.g., in the train_ranges) Args: sections: list of tuples (<onset>, <offset>) or (<label>, <onset>, <offset>) time_range: (list of) tuple(s) (<onset>, <offset>) Returns: """ if isinstance(tim...
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def snap(point,shape,snapRange=20): """ snap 'point' if within 'snapRange' from the border defined by 'shape' """ snapped = list(point) if snapped[0] < snapRange: snapped[0] = 0 if snapped[0] > shape[1]-snapRange: snapped[0] = shape[1] if snapped[1] < snapRange: snapped[1] = 0 if snapped[1] > shape[0]-snapR...
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def make_front_matter(title, weight): """Makes the front matter needed for Hugo.""" return f"""--- title: {title} linkTitle: {title} weight: {weight+1} type: docs --- """
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def collide_parent_tree(widget, x, y): """Returns whether (x, y) collide with the widget and all its parents. """ if not widget.collide_point(x, y): return False parent = widget.parent while parent and hasattr(parent, 'to_parent'): x, y = parent.to_parent(x, y) # transform to paren...
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import os import csv def load_auto_reply_settings(auto_reply_for_non_player_file): """ 读取关键词csv文档,返回keyword_dict对象 """ if os.path.exists(auto_reply_for_non_player_file): auto_reply_dict = dict() # {编号: [回复类型, 回复文件名称或内容, 视频描述]} with open(auto_reply_for_non_player_file, 'r') as f: ...
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def get_median(distribution): """ Median lies exactly midway of your distribution, when arraged in an order. Parameter: a list containing the distribution of the sample or population Returns: the median of the distribution """ n = len(distribution) # distribution size # for median, first s...
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import sys import traceback def extract_function_name(): """ Extracts failing function name from Traceback by Alex Martelli http://stackoverflow.com/questions/2380073/\how-to-identify-what-function-call-raise-an-exception-in-python """ tb = sys.exc_info()[-1] stk = traceback.ex...
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def concat(s): """This function takes a more user friendly regex (E.g: 'abc'), and inserts '.' concat operators where appropriate. (E.g: 'a.b.c')""" my_list = list(s)[::-1] # convert regex string to a reverse ordered list # characters with special rules special_characters = ['*', '|', '(', ')', '+...
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def get_src_path_root(src_path: str) -> str: """returns the root directory of a path (represented as a string)""" if "\\" in src_path: return src_path.split("\\", 1)[0] elif "/" in src_path: return src_path.split("/", 1)[0] return src_path
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def posok(state,x): """ 检测目标位置是否符合要求 """ y=len(state) for i in range(y): if abs(x-state[i]) in (0,y-i): return False else: return True
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def numpow(series, n, m): """ 自然数幂方和 计算方法: numpow(x, n, m) = n ^ m * x + (n - 1) ^ m * x.shift(1) + (n - 2) ^ m * x.shift(2) + ... + 2 ^ m * x.shift(n - 2) + 1 ^ m * x.shift(n - 1) 注意: 当n为有效值但当前的series序列元素个数不足n个, 函数返回 NaN 序列 Args: series (pandas.Series): 数据序列 ...
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def clean_nan(data, data_column): """Takes pandas dataframe of data and removes all rows containing NaN""" data.dropna(subset=[data_column, \ 'Quality'], inplace=True) return data
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import torch def calc_pairwise_distance(X, Y): """ computes pairwise distance between each element Args: X: [N,D] Y: [M,D] Returns: dist: [N,M] matrix of euclidean distances """ rx=X.pow(2).sum(dim=1).reshape((-1,1)) ry=Y.pow(2).sum(dim=1).reshape((-1,1)) dist=...
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def response_timeout(): """Server timeout response.""" return b"SPAMD/1.0 79 Timeout: (30 second timeout while trying to CHECK)\r\n"
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def str_to_address(v): """ :type v: str """ if not v: return None host, port = v.split(":", 1) return host, int(port)
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def get_size(driver, size_id): """ Return a ``NodeSize`` corresponding to a given id. :param driver: The libcloud driver to query for sizes. """ try: return [s for s in driver.list_sizes() if s.id == size_id][0] except IndexError: raise ValueError("Unknown size.", size_id)
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def samefile(path1, path2): """Return True if both pathname arguments refer to the same file or directory. :type path1: bytes | unicode | os.PathLike :type path2: bytes | unicode | os.PathLike :rtype: bool """ return False
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from typing import Any def non_english_lang_code(request: Any) -> str: """ Get all non-English language codes, but one per request. NOTE This is not currently used. Once a set of non-English language codes which are known to pass the test are identified, this can be used to test all of them one a...
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import time def createDateTimeString(now=None): """Return datetime as string (e.g. for saving results).""" if now is None: now = time.localtime() return str(now.tm_year) + str(now.tm_mon).zfill(2) + \ str(now.tm_mday).zfill(2) + '-' + \ str(now.tm_hour).zfill(2) + '.' + \ s...
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def pssm_recovery_range(struct,pssm_map,min,max): """return percent pssm recovery fro residues within a range of b factors""" pssm_recovery = 0.0; struct_size = 0.0; for residue in struct.get_residues(): score= residue.get_list()[1].get_bfactor() #print score if score >= min and score <= max: residue_name ...
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def fully_qualified_name(cls): """Return Fully Qualified name along with module""" return ".".join([cls.__module__, cls.__name__])
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def check_navn(navn, limit=2, remove='Ja Nei Nå Dem De Deres Unnskyld Ikke Ah Hmm Javel Akkurat Jaja Jaha'.split()): """Removes all items in navn with frequency below limit and words in all case as well as all words in list 'remove'""" r = {x:navn[x] for x in navn if navn[x] > limit and x.upper() != x and not x...
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def map_cursor_to_dict(cursor, columns): """ Map Cursor results to the dict """ results = [] for row in cursor.fetchall(): results.append(dict(zip(columns, row))) return results
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def point2str ( pnt ): """ point2str( pnt ) format a 3d data point (list of 3 floating values) for output to a .scad file. Also used to do equality comparison between data points. @param pnt - list containing the x,y,z data point coordinates @returns '[{x}, {y}, {z}]' with coordinate values forma...
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def collect_params(model): """Collect optim params for use with dent.""" params = [] for p in model.parameters(): if p.requires_grad: params.append(p) return params
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def _get_extra_configmaps_and_metrics(resource_name, resource_qsets): """ configmap used for logbeat """ extra_configmaps, metrics = [], [] for res in resource_qsets: cms, mts = res.get_extra_configmaps_and_metrics(resource_name) extra_configmaps.extend(cms) metrics.extend(mt...
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import hashlib def sha384(s): """Compute the SHA384 of a given string.""" return hashlib.sha384(s.encode("utf-8")).hexdigest()
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def compute_momentum(df, window=1): """Return momentum.""" df['Momentum'] = (df['Price'] / df['Price'].shift(window) - 1) return df.fillna(0)
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def compute_center(detections): """Compute the center for each detection. Args: detections: A matrix of shape N * 4, recording the pixel coordinate of each detection bounding box (inclusive). Returns: center: A matrix of shape N I 2, representing the (x, y) coordinate ...
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import re import os def _get_version(): """Read the __version__ value from src/domino_ingestion/version.py. We can't import the package because we're the installation script for the package, so we use regex and read the python file as a raw text file. """ version_regex = re.compile( r"""^...
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def subdict(d, nested_keys=None): """:return the dict nested hierarchically indicated by nested_keys or None if key list is incorrect :param nested_keys list of keys or a single keys """ if not isinstance(nested_keys, (tuple, list)): nested_keys = [nested_keys] for k in nested_keys: ...
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import re def LegalizeName(name): """ Return a file name suitable for uploading to Google Storage. The names of such files cannot contain dashes or other non-identifier characters. """ return re.sub(r'[^A-Za-z0-9_/.]', '_', name)
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