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def one_at(pos, size=8): """ Create a size-bit int which only has one '1' bit at specific position. example: one_at(0) -> 0b10000000 one_at(3) -> 0b00010000 one_at(5, 10) -> 0b0000010000 :param int pos: Position of '1' bit. :param int size: Length of value by bit. :rtype: int ...
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def make_site_pin_map(site_pins): """ Create map of site pin names to tile wire names. """ site_pin_map = {} for site_pin in site_pins: site_pin_map[site_pin.name] = site_pin.wire return site_pin_map
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import importlib def load_method_fn_from_method_path(module, method_path): """ Args: module (python module): module from which take the method. method_path (string): path to the method. Returns: if method_path is None returns None otherwise returns module.method_p...
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def revcomp(seq: str) -> str: """ reverse complement a nucleotide sequence. """ rc_nuc = { 'A': 'T', 'C': 'G', 'T': 'A', 'G': 'C', } seq_rev = seq[::-1] seq_rev_comp = ''.join([rc_nuc[n] for n in list(seq_rev)]) return seq_rev_comp
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def flatten_diff(diff): """ For spawning, a 'detailed' diff is not necessary, rather we just want instructions on how to handle each root key. Args: diff (dict): Diff produced by `prototype_diff` and possibly modified by the user. Note that also a pre-flattened diff will come out ...
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import yaml def load_config_file(config_file): """ 加载配置文件 Args: config_file(str): 配置文件路径 Returns: config_dict(dict): 配置词典 """ with open(config_file, 'r', encoding='utf-8') as rf: config_dict = yaml.load(rf, Loader=yaml.FullLoader) return config_dict
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def update_postcode(postcode_value): """Update postcodes using mapping dictionary. Takes postcode value, updates using postcode_mapping dictionary and returns updated value. """ postcode_mapping = {'78621' : '78681', '787664' : '78664', '78728-1275' : '78728'} if postcode_value not i...
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import re def convert_gcs_json_url_to_gsutil_form(url: str) -> str: """ Convert a GCS JSON API url to its corresponding gsutil uri. Parameters ---------- url: str The url in GCS JSON API form. Returns ------- gsutil_url: str The url in gsutil form. Returns empty strin...
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def can_merge_packages(package_info_list): """Returns true if all versions of a package can be replaced with a package name Args: package_info_list: list of PackageInfo. Method assumes, that all items in package_info_list have the same package name, but different package version. ...
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def _gen_index_name(keys): """Generate an index name from the set of fields it is over. """ return u"_".join([u"%s_%s" % item for item in keys])
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def _isoformat(date): """Format a date or return None if no date exists""" return date.isoformat() if date else None
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def get_cv(word, vowels, sep=None): """ Calculate the consonant ("C") and vowel ("V") structure of the given word. Returns a string of the characters "C" and "V" corresponding to the characters in the word. *vowels* -- A list of the characters representing vowels. *sep* -- String used to separ...
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import socket def check_devserver_port_used(port): """check if port is ok to use for django devserver""" sock = socket.socket(socket.AF_INET, socket.SOCK_STREAM) # immediately reuse a local socket in TIME_WAIT state sock.setsockopt(socket.SOL_SOCKET, socket.SO_REUSEADDR, 1) try: sock.bind(...
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import collections def taxonomy_counts(checkins, beerstyle2cat, bid2beer): """ Aggregate beer checkins `checkins` list to given taxonomy `beerstyle2cat`. `beerstyle2cat` is a dictionary mapping an Untappd beer style string to a taxonomic category. """ counts = collections.Counter() for c i...
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import torch from typing import Dict from typing import Any import json def inspect_parameters(module: torch.nn.Module, quiet: bool = False) -> Dict[str, Any]: """ Inspects the model/module parameters and their tunability. The output is structured in a nested dict so that parameters in same sub-modules ar...
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import re def get_uninterpolated_placeholders(string): """Check if a string has any remaining uninterpolated values. Args: string (string): String object. Returns: list : List of uninterpolated values. """ # Regex to find matches matches = re.findall(r'%\(([a-zA-Z0-9_-]+)...
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from typing import Iterable from typing import Callable def quantify(it: Iterable, pred: Callable = bool) -> int: """ Count how many times the predicate is true >>> quantify([[], (), None, 0, 1, -1, 'fsdfds', '']) 3 """ return sum(map(pred, it))
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def merge_dicts(*dictionaries): """ Merge multiple dictionaries. Last argument can be a boolean determining if the dicts can erase each other's content Examples -------- >>> dict1 = {'label': 'string'} >>> dict2 = {'c': 'r', 'label': 'something'} >>> merge_dicts(dict1, dict2, False) {'labe...
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def string_splitter(input_str, max_length=40): """ Returns a string that is the input string but with \n inserted every max_length chars :param input_str: :param max_length: int num of chars between \n :return: string """ chunks = [] chunk = '' pieces = input_str.split(' ') fo...
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def read_parameters_dict_lines_from_file_header( outfile, comments="#", strip_spaces=True ): """Load a list of pretty-printed parameters dictionary lines from a commented file header. Returns a list of lines from a commented file header that match the pretty-printed parameters dictionary format as ...
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def extract_smali_method(method_name, smali_file): """ Extracts a smali method from a smali file :param str method_name: the method to be extracted :param str smali_file: the file to extract the method from :return: the extracted method or empty string if not found """ with open(smali_file,...
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def contains(list, value): """Test value is in the list""" return value in list
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import torch def vectors_to_torch(vectors): """Convert numpy arrays in a vectors dictionary to torch double format. Args: vectors (:obj:`dict`): vectors dictionary as specified by s3dxrd.measurements.Id11.peaks_to_vectors() Returns: (:obj:`dict`): dictionary with same fields as ```ve...
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import hashlib def _hash_sha1(buf): """ Produce a 20-bytes hash of *buf* using SHA1. """ return hashlib.sha1(buf).digest()
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import uuid def generate_uuid_from_guid(guid: str, number: int): """Generate UUID from MD5 Hash of GUID and sequence number. Args: guid (str): Hex digest of UUID. number (int): Sequence number. Returns: str: Hex digest of generate UUID. """ return str(uuid.uuid3(uuid.UUI...
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from typing import Tuple def get_pos(target: Tuple[float, ...], area: Tuple[int, ...]) -> Tuple[int, ...]: """Get absolute position, given relative position and target area Parameters ---------- target : Tuple[float, float] Relative position area : Tuple[int, int] Absolute area ...
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import torch def split_last_dimension(x,n): """Reshape x so that the last dimension becomes two dimensions. The first of these two dimensions is n. Args: x: a Tensor with shape [..., m] n: an integer. Returns: a Tensor with shape [..., n, m/n] """ chunk_size = int...
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import binascii def bin2base64(bin_str): """ Convert bytes to base64 """ return binascii.b2a_base64(bin_str)
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def read_cluster_file(clusters): """ Read a cluster output file. This file should have the form: cluster_integer SEQUENCE1 cluster_integer SEQUENCE2 ... Returns two dictionaries. One maps sequence to cluster, the other maps cluster number to sequence. """ # Read file f = op...
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def is_in_line(to_keep, line): """ Checks if any of the class names in to_keep are in the line :param to_keep: A list that holds the class names which the user wants to keep. :param line: A single line in the file that is currently being examined. :return: Returns True if a class name from to_keep i...
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import ast def is_list_addition(node): """Check if operation is adding something to a list""" list_operations = ["append", "extend", "insert"] return ( isinstance(node.func.ctx, ast.Load) and hasattr(node.func, "value") and isinstance(node.func.value, ast.Name) and node.fun...
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def _check(shape, problem): """ Check if all points of the shape are contained in problem. """ return all([ point in problem for point in shape ])
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from typing import Optional def gens_are_consistent( complex_phase, solvent_phase, ngens: Optional[int] = 2, nsigma: Optional[float] = 3, ) -> bool: """ Return True if GENs are consistent. The last `ngens` generations will be checked for consistency with the overall estimate, ...
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def label_isolated(g): """label_isolated Creates a vertex property map with True if a node has no neighbours, else False. Parameters ---------- g (graph_tool.Graph): A graph. Returns ------- isolated_vp (graph_tool.VertexPropertyMap): Property map la...
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def _is_valid_make_var(varname): """Check if the make variable name seems valid.""" if len(varname) == 0: return False # According to gnu make, any chars not whitespace, ':', '#', '=' are valid. invalid_chars = ":#= \t\n\r" for n in range(0, len(invalid_chars)): if invalid_chars[n] ...
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def uniquify_labels(labels): """determines set of unique characters in labels (as returned by load_labels) and the number of occurences of each unique character Parameters ---------- labels : list of str Returns ------- unique_labels : set of char, e.g. {'0','a','b','c'...
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import hashlib def get_etag(text): """ Compute the etag for the rendered text""" return hashlib.md5(text.encode('utf-8')).hexdigest()
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def get_resource_limits(cursor, user, host): """Get user resource limits. Args: cursor (cursor): DB driver cursor object. user (str): User name. host (str): User host name. Returns: Dictionary containing current resource limits. """ query = ('SELECT max_questions AS MAX_QU...
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import inspect def instantiate_class_and_inject_attributes(cls, **kwargs): """ instantiates a class with the given kwargs, picking those arguments that are in the signature of cls to use for the __init__, and adding attributes to the constructed object with the remaining. :param cls: class to insantia...
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def get_same_predictions(y_pred, y_pred_adv): """ Get the indexes of the predictions where the image and the adversarial image where classified as the same class. Parameters ---------- y_pred: array Array with the predictions of the model in dataset. y_pred_adv: array Array...
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import collections import re def _build_question_dictionary(vqa, min_thre=0): """ :param vqa: VQA instance :param min_thre: only words that occur more than this number of times will be put in vocab :return: word-index dictionary """ counter = collections.defaultdict(int) for i, q in vqa.qq...
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def map_ores_code_to_int(code): """ Takes a 1-2 letter code from OREs and turns in into an int ORES Score map Stub - 0 Start - 1 C - 2 B - 3 GA - 4 FA - 5 """ return { 'Stub': 0, 'Start': 1, 'C': 2, 'B': 3, 'GA': 4, 'FA': 5, ...
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def format_tuple(values, resolution): """Returns the string representation of a geobox tuple.""" format = "%%0.%df" % resolution return "|".join(format % v for v in values)
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def f_htmltag(name: str, path: str) -> str: """ Receives tha URL and the name of the object it points to in dorder to create the html link tag :param name: str contains the name/title of the (html) plot. :param path: str contains the path to the (html) plot. :return: str. HTML tag with the link and...
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def attr_to_dict(obj, attr, dct): """ Add attribute to dict if it exists. :param dct: :param obj: object :param attr: object attribute name :return: dict """ if hasattr(obj, attr): dct[attr] = getattr(obj, attr) return dct
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def create_securitygroup_dialog(context, request, securitygroup_form=None, security_group_names=None): """ Modal dialog for creating a security group.""" return dict( securitygroup_form=securitygroup_form, security_group_names=security_group_names, )
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def remove_species_and_rename_other(df, drop_species, rename_category): """ Remove the species in drop_species, and rename the "other" category to "rarely_requested_species". """ reduced_df = df.loc[~df.species_group.isin(drop_species),:].copy() reduced_df.species_group.cat.remove_categories(dr...
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def create_graph(V, color, label): """ Setup the graph informations: x values, y values, color and label name. Parameters ---------- V : dict V contains X and Y values. color : str color name. label : str label name Returns ------- ...
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import string def _normalize(word): """Convert word to a form we can look up in CMU dictionary.""" return word.strip().strip(string.punctuation).lower()
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def anotate(name): """Annotate an object with a name.""" def decorator(obj): setattr(obj, "_tea_ds_plugin", name) return obj return decorator
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def countEdges(halfEdge): """Given a half-edge of a polygon, count the number of edges in this polygon.""" numberOfEdges=1 startingEdge=halfEdge edge=startingEdge.next while edge is not startingEdge: edge=edge.next numberOfEdges+=1 return numberOfEdges
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def db_delete_from_user_fields(project_id: str, field: str) -> str: """Remove the specified project from the field in the UsersCollection.""" return f'db.UsersCollection.updateMany({{}}, {{ $unset: {{ "{field}.{project_id}" : ""}} }})'
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def find_missing_number(nums: list[int]) -> int: """ Complexity: N = len(nums) Time: O(N) (iterate the entire array) Space: O(1) (in-place computations) Args: nums: array containing n distinct numbers taken from the range [0,n] (n+1 possi...
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import torch def smooth_dice_beta_loss(pred: torch.Tensor, target: torch.Tensor, beta: float=1., smooth: float=1., eps: float=1e-6) -> torch.Tensor: """ Smoothed dice beta loss. Computes 1 - (((1 + beta**2) * tp + smooth) / ((1 + beta**2) * tp + beta**2 * fn + fp + smooth + eps))...
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def sort_dicts(dicts, sort_by): """ :param dicts: list of dictionaries :param sort_by: key by which the list should be sorted :return: sorted list of dicts """ return sorted(dicts, key=lambda k: k[sort_by])
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def map_label(row, label_map): """ Creating a touple using two pre-existing columns, then using this touple as the key to look up table label in the dictionary Parameters ---------- row: row this function will apply to every row in the dataframe label_map: dictionary ...
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import base64 def serializePemBytesForJson(pem: bytes) -> str: """Serializes the given PEM-encoded bytes for inclusion in a JSON request body.""" return base64.b64encode(pem).decode('utf-8')
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def mode(values): """Returns the mode of the values. If multiples values tie, one value is returned. Args: values: A list of values. Returns: The mode. """ counts = {k: values.count(k) for k in set(values)} return sorted(counts, key=counts.__getitem__)[-1]
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import re def clean_text(txt, regex_lst, RE_EMOJI, stopwords_hindi): """This function takes the regular expression for various things such as punctuations and all which we want to remove and returns the cleaned sentence. Args: txt (str): Sentence which we have to clean. regex_lst (List[re]): List of all the...
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def format_data(calendar, planning_parser): """ Parse every event in the calendar string given in parameter with the parser also given in parameter and return a list with the events as formatted data. The calendar string must respect the iCalendar format in the first place. The data returned c...
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def get_frequency(key=88, pitch=440.0): """ Get frequency from piano key number :param key: key number of the piano :param pitch: convert pitch of the A4 note in Hz :return: frequency in hz """ return pow(2, float(key - 49) / 12.0) * pitch
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def get_image_features(image): """Return image data as a list.""" return list(image.getdata())
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import re def indention(str, front=re.compile(r"^\s+").match): """Find the number of leading spaces. If none, return 0. """ result = front(str) if result is not None: start, end = result.span() return end-start else: return 0 # no leading spaces
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def clip(n, start, stop=None): """Return n clipped to range(start,stop).""" if stop is None: stop = start start = 0 if n < start: return start if n >= stop: return stop-1 return n
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def istype(type, *obj): """ Returns whether or not all the inputs are of the specified type Parameters ---------- type : type the type to check against to *obj : object... a sequence of objects Returns ------- bool True if the inputs are of the specified typ...
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def _set_timelabel(obs, use_tref=True): """For a given observable, returns the timelabel to be used in plots Parameters ---------- obs : Observable instance use_tref : bool whether to use tref (set False for stationary plotting) Returns ------- timelabel : str """ if ob...
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import torch def all_diffs(a, b): """ Returns a tensor of all combinations of a - b. Args: a (2D tensor): A batch of vectors shaped (B1, F). b (2D tensor): A batch of vectors shaped (B2, F). Returns: The matrix of all pairwise differences between all vectors in `a` and in ...
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def wild2regex(string): """Convert a Unix wildcard glob into a regular expression""" return string.replace('.','\.').replace('*','.*').replace('?','.').replace('!','^')
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def _local_median(img, x, y, k): """ Computes median for k-neighborhood of img[x,y] """ flat = img[x-k : x+k+1, y-k : y+k+1].flatten() flat.sort() return flat[len(flat)//2]
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def crop_center(img, cropx, cropy, cropz): """ Take a center crop of the images. If we are using a 2D model, then we'll just stack the z dimension. """ x, y, z, c = img.shape # Make sure starting index is >= 0 startx = max(x // 2 - (cropx // 2), 0) starty = max(y // 2 - (cropy // 2...
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def slice_to_flow(arr, i, n): """ slice to the ith flow value given a total of n possible flow values""" assert(arr.shape[0] % n == 0) incr = round(arr.shape[0]/n) i_lower = i * incr i_upper = (i+1) * incr return arr[i_lower:i_upper, :]
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def utility(game, state, player): """Return the value to player; 1 for win, -1 for loss, 0 otherwise.""" return state.utility if player == 'W' else -state.utility
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def parenthesise(_value): """Adds a parenthesis around a values.""" return '(' + _value + ')'
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import requests def get_username(uuid): """Get the username of a player from the UUID""" r = requests.get("https://api.mojang.com/user/profiles/{}/names".format(uuid)) if r.ok and r.status_code not in [204, 400]: return r.json()[-1]["name"] else: if r.status_code in [204, 400]: ...
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def _module_to_paths(module): """Get all API __init__.py file paths for the given module. Args: module: Module to get file paths for. Returns: List of paths for the given module. For e.g. module foo.bar requires 'foo/__init__.py' and 'foo/bar/__init__.py'. """ submodules = [] module_segments =...
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def is_long_book(book): """Does a book have 600+ pages?""" return book.number_of_pages >= 600
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def expand_type_name(type_): """ Returns concatenated module and name of a type for identification. :param type_: Type: :type type_: type :return: Type name, as ``<type's module name>.<type name>``. :rtype: unicode | str """ return '{0.__module__}.{0.__name__}'.format(type_)
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def comma_separate(elements) -> str: """Map a list to strings and make comma separated.""" return ", ".join(map(str, elements))
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import pickle def import_model(clf_path = '../models/disaster_response_clf.pkl'): """ Function: load model from pickle file Args: clf_path (str): path of pickle file Return: model (GridSearch obj): loaded model """ with open(clf_path, 'rb') as f: model = pickle.load(f) ...
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def to_esmf(ts): """ Convert a UTC datetime into a ESMF string. :param ts: the datetime object :return: the date time in ESMF format """ return '%04d-%02d-%02d_%02d:%02d:%02d' % (ts.year, ts.month, ts.day, ts.hour, ts.minute, ts.second)
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from pathlib import Path def does_exist(os_path: str) -> bool: """ Check whether the file exists. """ return Path(os_path).exists()
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def removeDotGit(url): """ Remove trailing `.git` from the git remote url """ if url.endswith('.git'): return url[:-4] return url
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def log_message(source, *parts): """Build log message.""" message = source.__class__.__name__ for part in parts: message += f": {part!s}" return message
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def interval_union(intervals): """ Returns total size of intervals, expect interval as (chr, left, right) """ intervals.sort() total_len = 0 cur_chr, cur_left, cur_right = intervals[0] # left-most interval for interval in intervals: # open a new interval if left > cur_right or chr !...
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import typing def selective_join(parts: typing.List[str], n: int) -> typing.List[str]: """ Given the list of N+1 strings, and an integer n in [0, 2**N - 1] range, concatenate i-th and (i+1)-th string with space inbetween if bit i is not set in n. Examples: selective_join(['a', 'b', 'c'], 0b00...
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def get_totals(cpuinfo): """Compute totals: - real: physical CPUs - cores: cores x physical CPU - total: logical CPUs real*cores*siblings Note: Siblings are only counted if Hyperthreading is enabled """ # We assume same CPU architecture for multi CPU systems real = len({cpui...
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def dos_line(f, ndos): """ Parses density of states data from DOSCAR Parameters ---------- f : file object File object containing data in DOSCAR file ndos: int Number of lines in f to be parsed Returns ------- data : list List of density of ...
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def attr_sum_of_nodes(con,attr_name,node_ids=None): """Get the SUM() of node_ids's values for attr_name. con: a SQLite connection attr_name: The name of the attr values to fetch. node_ids: a list of ids to sompute the sum from. Returns a number that is the requested sum. """ if node_ids...
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def hamming(n): """Returns the nth hamming number""" hamming = {1} x = 1 while len(hamming) <= n * 3.5: new_hamming = {1} for i in hamming: new_hamming.add(i * 2) new_hamming.add(i * 3) new_hamming.add(i * 5) # merge new number into hamming set...
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def get_amount_in_ml(dose, concentration): """Calculates the amount of liquid drug to be given in mls, given a dose(mg/kg) and concentration (mg/ml. :params: dose(mg/kg) - Float concentration - Float :returns: Amount in mls - Float Examples: >>> get_amount_in_ml(2.5, 50) 0.05 ...
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def races_per_year(self): """Return total number of career starts for the horse divded by the horse's age as at the race date""" if self.age is not None and self.age > 0: return self.career.starts / self.age
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def compare_np_arrays(x, y): """checks if 2 numpy arrays are identical""" return (x == y).all()
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def sql_select_one(tbl, col_key): """ select one column from a table """ return tbl[col_key]
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def _get_model_or_module(crypten_model): """ Returns `Module` if model contains only one module. Otherwise returns model. """ num_modules = len(list(crypten_model.modules())) if num_modules == 1: for crypten_module in crypten_model.modules(): return crypten_module return cryp...
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def C_fingas(heavy, precent_dist_180): """ Returns the constant C used in fingas model source : (Fingas, 2015) Parameters ---------- heavy : True if the fuel need to follow a ln, else it will be a sqrt. precent_dist_180 : Percentage distilled by weight at 180 °C [] """ if heavy: ...
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def build_speechlet_response(output, should_end_session): """ Return a speech output after an Alexa function is executed. Builds a simple speech response after the user invokes a particular Alexa function. The response used here is a simple, plain text response but can be enhanced by customizing the ca...
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def user_select(client, file_=None, maxi=None): """Prompt user to select one or more dimensions, and return their selections. client (obj): creopyson Client. `file_` (str, optional): Model name. Defaults is current active model. maxi (int, optional): The ...
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def calculate_CHI(seq_target, seq_source, df_target_freq, df_source_freq): """Calculate Codon Harmonization Index (CHI)""" df_source_freq = df_source_freq.set_index('codon') df_target_freq = df_target_freq.set_index('codon') diffsum = 0 for i in range(0, len(seq_source), 3): codon_target =...
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import re def is_url_valid(string): """ This function checks whether input string follow URL format or not Args: string: Input string Returns: True: if string follows URL format False: if string doesn't follow URL format >>> is_url_valid("C:/users/sample/Desktop/image.jpg...
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def word_to_index(vocab): """ Encoding words by indexing. Parameters ---------- vocab: list. Returns ------- word_to_idx dictionary. """ word_to_idx = {} for word in vocab: word_to_idx[word] = len(word_to_idx) return word_to_idx
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