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def num(s): """Function will try to convert the variable to a float. If not possible it will return the original variable.""" try: return float(s) except: return s
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def find_interval(x, partition, endpoints=True): """ find_interval -> i If endpoints is True, "i" will be the index for which applies partition[i] < x < partition[i+1], if such an index exists. -1 otherwise If endpoints is False, "i" wil...
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def _unpack_row(row: list, interval_length: int) -> tuple: """ Retrieves data-points based on fixed hardcoded positions in source file. Args: row (list): Row of data from source file. interval_length (int): The number of periods included in raw data. Returns: t...
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def default_Name(x, world) : """The default name of a thing is its id, X.""" return str(x)
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def _parse_and_format_value(string_value): """Parses and formats a string into the stats format. Args: string_value: Value of the stat as string. Returns: Value of the stat as a float. """ if str(string_value).lower() == 'nan': return None if type(string_value) == float: return string_val...
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def attempt(func, *args, **kargs): """Attempts to execute `func`, returning either the result or the caught error object. Args: func (function): The function to attempt. Returns: mixed: Returns the `func` result or error object. Example: >>> results = attempt(lambda x: x/...
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import requests import shutil def download_file(url): """Downloads file from parameter using requests and shutil Args: url (string): URL of file to be downloaded Returns: string: filename of the downloaded file """ local_filename = url.split("/")[-1] with requests.get(url, st...
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import re def ToLowerCamel(name): """Convert a name with underscores to camelcase.""" return re.sub('_[a-z]', lambda match: match.group(0)[1].upper(), name)
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def get_model_scores(model, train_test_sets): """ Returns scores produced by trained estimator Uses the `predict_proba` attribute or the `decision_function`, whichever is available. Input ----- model: trained (fitted) classifier train_test_sets: tuple of (X_tr_scaled, y_tr, X_te_scaled,...
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import re def is_var_value(p, pltype): """ Variable values follow the variable description or other variable values or variable descriptions. It should have a value, whitespace, period, and then value description. """ if pltype in ['Blank', 'Var Desc', 'Var Value', 'Val Desc']: pparse...
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def _GetRevision(options): """Get the SVN revision number. Args: options: options object. Returns: The revision number. """ revision = options.build_properties.get('got_revision') if not revision: revision = options.build_properties.get('revision', 'testing') return revision
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def assign_province_road_conditions(x): """Assign road conditions as paved or unpaved to Province roads Parameters x - Pandas DataFrame of values - code - Numeric code for type of asset - level - Numeric code for level of asset Returns String value as paved or unpav...
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def _get_ring_marker(used_markers): """ Returns the lowest number larger than 0 that is not in `used_markers`. Parameters ---------- used_markers : Container The numbers that can't be used. Returns ------- int The lowest number larger than 0 that's not in `used_markers`...
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def get_ipsec_udp_key_history( self, ) -> dict: """Get IPSEC UDP key history .. list-table:: :header-rows: 1 * - Swagger Section - Method - Endpoint * - ikeless - GET - /ikeless/seedHistory :return: Returns dictionary ikeless key history...
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def chunks(l, n): """Yield successive n-sized chunks from l. Parameters ---------- l : list The list to split in_ chunks n : int The target numbers of items in_ each chunk Returns ------- list List of chunks """ pieces = [] for i in range(0, len(l),...
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from typing import Optional import yaml def get_repo_version(filename: str, repo: str) -> Optional[str]: """Return the version (i.e., rev) of a repo Args: filename (str): .pre-commit-config.yaml repo (str): repo URL Returns: Optional[str]: the version of the repo """ wit...
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from typing import Dict from typing import Tuple import json def read_tagger_mapping(filename: str) -> Dict[str, Tuple[str, str]]: """ Reads the tagger mapping from `filename`. :param str filename: Path to tagger mapping JSON file. :return: Dict with entity type as key and tuple consisting of tagger ...
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import pathlib import shutil def workdir(tmpdir): """Create a working directory with PatchSim test data files.""" basedir = pathlib.Path(__file__).resolve().parents[1] / "manual_tests" for fname in basedir.glob("cfg_*"): shutil.copy(str(basedir / fname.name), str(tmpdir)) for fname in basedi...
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def average_error_to_weight(error): """ Given the average error of a pollster, returns that pollster's weight. The error must be a positive number. """ return error ** (-2)
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def theta(x): """heaviside function.""" return int(x >= 0)
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def find_short(strg): """Return length of shortest word in sentence.""" words = strg.split() min_size = float('inf') for word in words: if len(word) < min_size: min_size = len(word) return min_size
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def subor_obsahuje(nazov_suboru: str, hladany_subor: str, encoding='utf8') -> bool: # type boolean """ Zisti, či súbor názov_súboru vo svojom texte obsahuje hladany_text.      Vráť False, ak súbor nemožno otvoriť alebo sa jedná o adresár. """ try: with open(nazov_suboru, encoding=encoding) as f:...
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import inspect def find_arg_names(fn) -> tuple: """ Creates a dictionary mapping of the argument name to its index of a function :param fn: a callable function :return: a tuple with the first item being a dictionary of the argument name to index of the argument, the second argument being a di...
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def get_num_params(vocab_size, num_layers, num_neurons): """Returns the number of trainable parameters of an LSTM. Args: vocab_size (int): The vocabulary size num_layers (int): The number of layers in the LSTM num_neurons (int): The number of neurons / units per layer Returns: ...
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def data_for_stan(cases, settings): """ Returns data for the model. Parameters ---------- list of float: Cumulative number of people infected (confirmed). Returns ------- dict: Data that is supplied to Stan model. """ q = -1 + settings.population_size / cases...
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import torch def single_emd_loss(p, q, r=2): """ Earth Mover's Distance of one sample Args: p: true distribution of shape num_classes × 1 q: estimated distribution of shape num_classes × 1 r: norm parameter """ assert p.shape == q.shape, "Length of the two distribution must...
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def _new_episodes(cache, feed): """Returns all episodes in the feed that have not been previously added to the cache. """ episodes = [] for episode in feed.episodes: if not cache.has(episode): episodes.append(episode) return episodes
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def filter_vocab(vocab, df, min_df): """ Filter out rare tokens and construct a new vocabulary. @param vocab: input vocabulary @param df: document frequency dictionary (term: frequency) @param min_df: minimum document frequency """ new_vocab = {'PAD': 0} for term in vocab: if ter...
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def infer_tz_from_timestamp(timestamp): """ infer the the time zone from a timestamp object :param pandas.Timestamp/datetime.datetime timestamp: the target timestamp :return: the inferred time zone :rtype: datetime.tzinfo """ return timestamp.tzinfo
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def standardize_method_to_len_3(name, padding="--", joiner=","): """Standardize an LCIA method name to a length 3 tuple. ``name`` is the current name. ``padding`` is the string to use for missing fields. """ if len(name) >= 3: return (tuple(name)[:2] + (joiner.join(name[2:]),)) else: ...
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import gettext def app_translator(lang): """Localization of the application. Arguments --------- lang: "String containing application language" Modules ------- gettext: "Internationalization and localization support" Returns ------- trad: "Function to translate s...
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import re def get_build_id(log_file): """This function finds the build ID within the appropriate log file. Inputs: - log_file: Absolute path to the Klocwork log file kwloaddb.log [string] Outputs: - build_id: The build ID that is used by Klocwork to identify the analysis [string] """...
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def write_normal(fname,triplets,na,angd,agr): """ Write out ADF data in normal ADF format. """ outfile= open(fname,'w') outfile.write('# 1:theta[i], ') for it,t in enumerate(triplets): outfile.write(' {0:d}:{1:s}-{2:s}-{3:s},'.format(it+2,*t)) outfile.write('\n') for i in range(n...
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def map_to_45(x): """ (y-y1)/(x-x1) = (y2-y1)/(x2-x1) ---> x1 = 1, x2 = 5, y1 = 1, y2 = 4.5 output = output_start + ((output_end - output_start) / (input_end - input_start)) * (input - input_start) """ input_start = 1 input_end = 5 output_start = 1 output_end = 4.5 if x >= 5: ...
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def sushi(roll): """Transform a frame to a type, value structure Examples: - ['X', '-'] -> {type: "strike", values: [10, 0]} - ['2', '7'] -> {type: "regular", values: [2, 7]} - ['-', '-'] -> {type: "regular", values: [0, 0]} - ['1', '/'] -> {type: "spare", values: [1, 9]} - ... ...
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import torch def compute_inner_distmat(features: torch.Tensor): """ Used to obtain `gallery_distmat` or `all_distmat` Args: features: Tensor(x, m) (x = g for gallery_distmat, x = q + g for all_distmat) Returns: Tensor(x, x) Euclidean squared distance """ n, m = featur...
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import logging def get_port_map(dut, asic_index=None): """ @summary: Get the port mapping info from the DUT @return: a dictionary containing the port map """ logging.info("Retrieving port mapping from DUT") namespace = dut.get_namespace_from_asic_id(asic_index) config_facts = dut.config_fa...
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def format_number(number): """ Return the number formatted, if the number contain .0 return only the integer part """ if number % 1 == 0: return int(number) else: return number
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def newman_conway(num): """ Returns a list of the Newman Conway numbers for the given value. Time Complexity: O(n) because the number of calculations performed depends on the size of num. Space Complexity: Space complexity is also O(n) becuase newman_conway_nums array to store sequence valu...
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def is_fasta_file_extension(file_name): """ Check if file has fasta extension Parameters ---------- file_name : str file name Returns ------- bool True if file has fasta extension, False otherwise """ if file_name[-4:] == ".fna": return True elif file_name[-4:] == ".faa": return True elif file_nam...
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def cluster_idx(idx_ls): """Given a list of idx, return a list that contains sub-lists of adjacent idx.""" if len(idx_ls) < 2: return [[i] for i in idx_ls] else: output = [[idx_ls[0]]] prev = idx_ls[0] list_pos = 0 for idx in idx_ls[1:]: if idx - 1 =...
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def read_list_from_txt(file): """ Read a text file into a list, with each line as an element. :param file: the .txt file (with path). """ with open(file) as txt_file: contents = txt_file.read().splitlines() print(">>> Loaded {} lines from [{}].".format(len(contents), file)) return c...
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from datetime import datetime def get_random_seed() -> int: """Generate a random seed based on the current datetime.""" return int(datetime.now().replace(microsecond=0).timestamp())
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def myround(x: int, base=5) -> int: """ Round to the next multiple of the base Parameters ---------- x : int input value base : int base value (5 by default) Returns ------- int """ return base * round(x / base)
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def time_human(x): """ Gets time as human readable """ # Round time x = round(x, 2) for number, unit in [(60, "s"), (60, "min"), (24, "h"), (365, "days")]: if abs(x) < number: return f"{x:.2f} {unit}" x /= number return f"{x:.2f} years"
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from typing import Iterable from typing import Mapping def _iter_but_not_str_or_map(maybe_iter): """Helper function to differ between iterables and iterables that are strings or mappings. This is used for pynads.concrete.List to determine if an iterable should be consumed or placed into a single value tup...
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def _list_tool_categories(tl): """ Given a list of dicts `tl` as returned by the `parse_tool_list` method and where each list element holds a key `tool_panel_section_id`, return a list of unique section IDs. """ category_list = [] for t in tl: category_list.append(t.get('tool_panel_s...
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from typing import List def diagonal_traverse(matrix: List[List[int]]) -> List[int]: """ Given a matrix of M x N elements (M rows, N columns), return all elements of the matrix in diagonal order. Input: [[1, 2, 3], [4, 5, 6], [7, 8, 9]] Output: 1, 2, 4, 7, 5, 3, 6, 8, 9 :param matr...
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def start_worker(w): """Start a worker. Returns: Worker """ w.run() return w
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def _encode_selected_predictions_csv(predictions, ordered_keys_list): """Encode predictions in csv format. For each prediction, the order of the content is determined by 'ordered_keys_list'. :param predictions: output of serve_utils.get_selected_predictions(...) (list of dict) :param ordered_keys_list...
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from typing import List from typing import Dict def construct_rows(header: list, rows: list) -> List[Dict]: """Construct a list of csv row dicts.\n Arguments: header {list} -- csv header\n rows {list} -- csv contents\n to warp if there is only a single row, e.g. [row]\...
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def paste_js(clipboard): """Paste the string ``clipboard`` into the selected text of the focused element in the DOM using JavaScript/jQuery. """ return ( f"var focused = document.activeElement;\n" f"var start = focused.selectionStart;\n" f"var end = focused.selectionEnd;\n" ...
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def member_to_beacon_proximity_fill_gaps(m2b, time_bins_size='1min', max_gap_size = 2): """ Fill gaps in a given member to beacon object Parameters ---------- m2b : Member to beacon object time_bins_size : str The size of the time bins used for resamp...
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def biofile(itisbio): """ Returns string containing ".bio" or empty string depending on fasta sequence employed Parameters ---------- itisbio : bool Contains information about the nature of fasta sequence. Returns ------- bio_path : str Either ".bio" or empty string. ...
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def normalize_color_tuple(h :int, s:int, x:int) -> tuple: """ Normalize an HSV or HSL tuple. Args: h: `int` in {0, ..., 360} corresponding to hue. s: `int` in {0, ..., 100} corresponding to saturation. x: `int` in {0, ..., 100} corresponding to light or value. Returns:l T...
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def get_positive_dim(dim: int, dim_size: int) -> int: """ Given an integer number that represents a dimension in the array, transform it to a positive integer dim if it's negative. Otherwise, do nothing. Args: dim (int): A integer number that represents a dimension in an array. dim_...
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import torch def decode_μ_law(waveform: torch.Tensor, μ: int = 255) -> torch.Tensor: """ Applies the element-wise inverse μ-law encoding to the tensor. Args: waveform: input tensor μ: size of the encoding (number of possible classes) Returns: the decoded tensor """ as...
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import requests def get_api_results(url, id): """[summary] Args: url ([str]): [External API url] id ([int]): [member id] Returns: [json]: [API request response] """ r = requests.get(url.format(id)) return r.json()
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from typing import Sequence import torch def _project_anchors(fmap_shape: Sequence[int], stride: int, anchors: torch.Tensor) -> torch.Tensor: """ project the calculated anchors in each (W x H) positions of a feature map. Args: fmap_shape (Tuple[int, int]): shape of the feature map (W x H) ...
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def get_modal_scale(scale_notes, mode): """Return the scale after applying a musical mode to it Arguments: scale_notes -- A list of Note objects of which the scale to transform is made mode -- int representing mode value as in mode_info dict """ return scale_notes[mode-1:]
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import re def strip_color(inp: str) -> str: """ Remove ANSI color/style sequences from a string. May not catch obscure codes used outside this module. :param inp: the string to strip :return: ``inp`` with ansi codes removed """ return re.sub('\x1b\\[(K|.*?m)', '', inp)
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from bs4 import BeautifulSoup def generate_soup(html, parser): """Return BeautifulSoup object Args: html (str): text response from website requested parser (str): parser used by BeautifulSoup Returns: BeautifulSoup: Navigable BeautifulSoup object """ return BeautifulS...
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def harmean(vals): """Compute the harmonic mean of list-like vals. Special case for presence of 0: return 0.""" try: s = sum((1.0 / x for x in vals)) except ZeroDivisionError: return 0.0 return len(vals) / s
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def flatten(iterables): """ Flatten an iterable of iterables. Returns a generator. list(flatten([[2, 3], [5, 6]])) => [2, 3, 5, 6] """ return (elem for iterable in iterables for elem in iterable)
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import json import base64 def serialize_validation_info(info): """Serialize the given validation info into a raw format. Args: info (dict): The dictionary of validation info. Returns: unicode: The base64-encoded JSON of the validation info. """ data = json.dum...
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from typing import Tuple import math def move_on_angle(x: float, y:float, angle: float, distance: float) -> Tuple[float, float]: """Move a distance towards an angle in radians""" return x + distance * math.cos(angle), y + distance * math.sin(angle)
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def unify_1_md(bins, edges): """Unify 1- and multidimensional bins and edges. Return a tuple of *(bins, edges)*. Bins and multidimensional *edges* return unchanged, while one-dimensional *edges* are inserted into a list. """ if hasattr(edges[0], '__iter__'): # if isinstance(edges[0], (lis...
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import math def extract_length(**kwargs): """ Extract length measures (tokens and chars; linear and log) on whole query. Returns: (function) A feature extraction function that takes a query and \ returns number of tokens and characters on linear and log scales """ del kwargs ...
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def gdv(dd,n=0): """Get-dict-val; returns n-th val of dict dd.""" return dd[list(dd.keys())[n]]
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import torch def _solve_lstsq_subcols(rhs, lhs, lhs_col_idx): """Solves an over-determined linear system for selected LHS columns. A batched version of `torch.lstsq`. Args: rhs: right-hand side vectors lhs: left-hand side matrices lhs_col_idx: a slice of columns in lhs Retu...
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def xr_collapse_across_time(da, time_slice=("2080", "2100")): """ Slices an array along time and averages across time. Parameters ---------- da : xr.DataArray with 'time' dimension time_slice : tuple of str first and last date of sub-period to keep. Returns ------ da...
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def freqAt(freqDict: dict, nuc: str, n: int) -> float: """Read a frequency dictionnary returned by the function freqList. **Keyword arguments:** freqDic -- frequence dictionnary nuc -- nucleotide A,T,G or C n -- position """ return freqDict[nuc][n]
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def points2contour(points): """ Convert points to contours. (pts2cnt) :param points: array of points ([x,y] for openCV, [y,x] for numpy) :return: Example:: points = np.array([[0, 0], [1, 0]]) # points contours = points2contour(points) print contours # np.array([[[0, 0]], [...
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def hits(service): """Returns metric 'Hits'.""" return service.metrics.select_by(**{'system_name': 'hits'})[0]
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def dustSurfaceDensityDouble(R, Sig1, Sig2, R1, p1, p2): """ Calculates the dust surface density (Sigma d) from a 2-sloped discontinuous power law. """ if R <= R1: return Sig1 * pow(R / R1, -p1) else: return Sig2 * pow(R / R1, -p2)
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def get_manual_snapshots_for_db_instance(client_obj, instance_id): """ Return list of manual snapshots for instance """ db_snapshots = client_obj.describe_db_snapshots( DBInstanceIdentifier=instance_id, SnapshotType='manual' ) return db_snapshots['DBSnapshots']
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import warnings def format_channel_id(ch): """ Function for formatting an `idelib.dataset.Channel` or `SubChannel` for display. Renders as only the channel and subchannel IDs (the other information is shown in the rest of the table). :param ch: The `idelib.dataset.Channel` or `idelib.data...
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def build_window_title(paused: bool, current_file) -> str: """ Returns a neatly formatted window title. :param bool paused: whether the VM is currently paused :param current_file: the name of the file to display :return str: a neatly formatted window title """ return f"EightDAD {'(PAUSED)' ...
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def power_level(serial: int, x: int, y: int) -> int: """Compute the power level of the fuel cell at x, y. """ rack_id = x + 10 p = rack_id * y + serial p *= rack_id p = (p // 100) % 10 return p - 5
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import re def gmlId(id): """ Given an id candidate string, return a valid GML id attribute value by removing forbidden characters. """ return re.sub('\W|^(?=\d)','_', id)
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def get_metrics(metrics, loss): """Structure metrics and results in a dict""" metrics_values = dict() metrics_values['loss'] = loss.item() prec, prec_by_class = metrics.get_pixel_prec_class() # harmonic_mean=True) recall, recall_by_class = metrics.get_pixel_recall_class() # harmonic_mean=True) ...
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import torch def _soft_nms( box_class, pairwise_iou_func, boxes, scores, method, gaussian_sigma, linear_threshold, prune_threshold, topk_per_image, ): """ Soft non-max suppression algorithm. Implementation of [Soft-NMS -- Improving Object Detection With One Line of Code...
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def on_off(image, w, h, threshold=128): """ Black and white (no greyscale) with a simple threshold. If the color is dark enough, the laser is on! """ result = [] for row in image: result_row = [] for pixel in row: # We draw black, so 255 is for dark pixels ...
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from typing import Tuple from typing import List def split_by_commas(maybe_s: str) -> Tuple[str, ...]: """Split a string by commas, but allow escaped commas. - If maybe_s is falsey, returns an empty tuple - Ignore backslashed commas """ if not maybe_s: return () parts: List[str] = [] ...
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def early_stopping(val_bleus, patience=3): """Check if the validation Bleu-4 scores no longer improve for 3 (or a specified number of) consecutive epochs.""" # The number of epochs should be at least patience before checking # for convergence if patience > len(val_bleus): return False l...
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def fix_line_breaks(s): """ Convert \r\n and \r to \n chars. Strip any leading or trailing whitespace on each line. Remove blank lines. """ l = s.splitlines() x = [i.strip() for i in l] x = [i for i in x if i] # remove blank lines return "\n".join(x)
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def serialize_config( config_data ): """ Generate a .ini-formatted configuration string to e.g. save to disk. """ return "[syndicate]\n" + "\n".join( ["%s=%s" % (config_key, config_value) for (config_key, config_value) in config_data.items()] )
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def title(s): """Convert string to title case keeping any words already starting with capital letter as is. """ return " ".join([w.title() if w.islower() else w for w in s.split()])
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def get_box_size(box): """ calculate the bound box size """ return (box[:, 2]-box[:, 0]) * (box[:, 3]-box[:, 1])
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def split(line, types=None, delimiter=None): """ Splite a line of text and optionally performs type conversion. By default, splitting is performed on whitespace, but a different delimiter can be selected with delimiter keyword argument. For example:接下来的才是最重要的! >>> split('GOO...
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def _single_prefix_path(root): """ Return (single-prefix path, rest of tree with new root) """ path = [] tree = root node_links = root.node_links while len(tree) == 1: tree = next(iter(tree.values())) path.append((tree.item, tree.count)) node_links.pop() tree.parent, tree...
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def split_token_sequences(s, token_seps="/"): """ Split string on whitespace. Also split_token_sequences on slashes but preserve them in the token sequence. """ results = s.split() for sep in token_seps: new_results = [] for part in results: for i, sub_part in enumera...
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import torch def rotation_matrix_to_quaternion(rotation_matrix, eps=1e-6): """ This function is borrowed from https://github.com/kornia/kornia Convert 3x4 rotation matrix to 4d quaternion vector This algorithm is based on algorithm described in https://github.com/KieranWynn/pyquaternion/blob/mas...
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def erb_bandwidth(fc): """Bandwidth of an Equivalent Rectangular Bandwidth (ERB). Parameters ---------- fc : ndarray Center frequency, or center frequencies, of the filter. Returns ------- ndarray or float Equivalent rectangular bandwidth of the filter(s). """ # In...
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from typing import Dict from typing import Any def empty_params(*args, **kwargs) -> Dict[str, Any]: """Return an empty dict.""" return {}
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from typing import Union def aslist(i, argname: Union[str, None], allowed_types=list): """ Converts iterables (except strings) into a list. :param argname: If string, it's used in the exception raised when `i` not an iterable. If `None`, wraps non-iterables in a single-item list. """ ...
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def kgs2lbs(sets, sub=0): """Convert a set of weights in kilograms to pounds. :param list sets: Iterable of prescribed weights. :param int sub: Amount to subtract from each converted weight. Useful for when taking into account bar weight. """ return (int(round(x * 2.20462) - sub) for x in sets)
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def swap_bits(x, i, j): """ Swap the ith and jth indices in 'x'. """ # Extract the i and j indices to see if they differ. if (x >> i) & 1 != (x >> j) & 1: # Retrieve the bits to flip by shifting to # the ith and jth indices. Create a bit mask. bit_mask = (1 << i) | (1 << j) # Flip bits. #...
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def feet(i): """ feet(i) Return i (in inches) converted to feet. """ return i / 12
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def _computeforwardmissing(a, b, match=None): """Computes which files are in b but not a. This is its own function so extensions can easily wrap this call to see what files _forwardcopies is about to process. """ ma = a.manifest() mb = b.manifest() return mb.filesnotin(ma, match=match)
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