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def validate_sample_name(query_name: str, sample_list): """ Function will validate the query name with a sample list of defined names and aliases """ verified_sample_name = [key for key, value in sample_list.items() if query_name.lower() in value['aliases']] if verified_sample_name: return...
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def compareThresh(value,threshold,mode,inclusive, *, default=False): """Returns a boolean only if value satisfies the threshold test. In case of failure of any sort, returns the default value (which defaults to 'False'). Accepted mode values are '<', '>', '<=' and '>='.""" #normalizing input i...
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import re def _opts_to_list(opts): """ This function takes a string and converts it to list of string params (YACS expected format). E.g.: ['SOLVER.IMS_PER_BATCH 2 SOLVER.BASE_LR 0.9999'] -> ['SOLVER.IMS_PER_BATCH', '2', 'SOLVER.BASE_LR', '0.9999'] """ if opts is not None: li...
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def differenclists(list1, list2): """ Returns list1 \ list2 (aka all elements in list 1 that are not in list 2) """ return list(set(list1).difference(list2))
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def determine_upgrade_actions( repo, format_upgrades, optimizations, sourcereqs, destreqs ): """Determine upgrade actions that will be performed. Given a list of improvements as returned by ``find_format_upgrades`` and ``findoptimizations``, determine the list of upgrade actions that will be perfor...
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def stata_string_escape(text: str) -> str: """Escape a string for Stata. Use this when a string needs to be escaped for a single line. Args: text: A string for a Stata argument Returns: A quoted string. """ new_text = text new_text = new_text.replace('\n', ' ') new_tex...
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def _gather_results(tree): """Convert the XML tree into a map of pod types to tuples (title, value). """ result = {} for pod in tree.findall('.//pod'): pod_type = pod.attrib['id'] title = pod.attrib['title'] val = None for plaintext in pod.findall('.//plaintext'): ...
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def find_last_reaction_index(species_reaction_sets, srs_idx): """Returns the index in species_reaction_sets where the reaction set at srs_idx ends. :param species_reaction_sets: list of species-specific CoMetGeNe reaction sets :param srs_idx: index of a reaction set in species_reaction_sets ...
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import re def _progress_stdout_handler(progress_cb): """ :return: stdout handler which looks for percentage done reports and makes an appropriate call to the progress callback. The handler uses a regex to look for a 'percentage' output and calls the progress handler with the number f...
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import torch def cropToFrame(bbox, image_shape): """Checks if bounding boxes are inside frame. If not crop to border""" array_width = torch.ones_like(bbox[:, 1]) * image_shape[1] - 1 array_height = torch.ones_like(bbox[:, 2]) * image_shape[0] - 1 bbox[:, 1:3] = torch.max(bbox[:, 1:3], torch.zeros_lik...
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def calc_ttr(df_ttr): """Calculates travel time reliability. Args: df_ttr, a pandas dataframe. Returns: df_ttr, a pandas dataframe with new ttr column. """ # Working vehicle occupancy assumptions: VOCt = 1 df_ttr['VOLt'] = df_ttr['pct_truck'] * df_ttr['dir_aadt'] * 365 df_ttr['ttr'] = df...
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import json def get_creds(file): """ Loads simple json file stored elsewhere with credentials. See the sample_creds.json folder for the expected format. :param file: json file containing key/value cres :return: client_id, client_secret, user_agent for Reddit api """ file = "E:/...
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def clip(s, n=1000): """ Shorten the name of a large value when logging""" v = str(s) if len(v) > n: v[:n]+"..." return v
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def has_tag(tags, target) -> bool: """ Verifies that the `target` tag is present in a query set. @param tags: tags to be checked @param target: the tag searched for @return: True if the target is present, False otherwise """ for tag in tags: if tag.tag == target: return T...
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import math import torch def log_prob_standard_normal(x): """ Computes the log-probability of observing the given data under a (multivariate) standard Normal distribution. Although this function is equivalent to the :code:`log_prob` method of the :class:`torch.distributions.MultivariateNormal` class, ...
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def print_time(time): """Format a datetime object to be human-readable""" return time.astimezone(tz=None).strftime('%m/%d')
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from datetime import datetime def date_check(y, m, d): """Ensure that a date is valid.""" try: test = bool(datetime.strptime(f"{y}{m}{d}", "%Y%m%d")) except: test = False return test
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def moeda(n=0, moeda='R$'): """ -> Formata os valores monetários :param n: (opcional) Valor a ser formatado :param moeda: (opcional) Moeda a ser utilizado na formatação :return: Valor 'n' formatado """ return f'{moeda}{n:.2f}'.replace('.', ',')
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def add_right_title(ax, title, **kwargs ): """Add a centered title on rigth of the selected axis. All :func:`~matplotlib.Axes.annotate` parameters are accessible. :param ax: Target plot axis. :type ax: :class:`~matplotlib.Axes` :param str title: Title text to add. :return: :class:`~matplo...
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import json def read_notebook(file, store_markdown= False): """Reads a notebook file and returns the code""" code = json.load(open(file)) # file = getBaseNameNoExt(file) py_file = "" # open(f"{file}.py", "w+") for cell in code['cells']: if cell['cell_type'] == 'code': for lin...
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import re def get_valid_filename(s): """Sanitize string to make it reasonable to use as a filename. From https://github.com/django/django/blob/master/django/utils/text.py Parameters ---------- s : string Examples -------- >>> print get_valid_filename(r'A,bCd $%#^#*!()"\' .ext ') ...
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def alert_data_to_xsoar_format(alert_data): """ Convert the alert data from the raw to XSOAR format. :param alert_data: (dict) The alert raw data. """ properties = alert_data.get('properties', {}) formatted_data = { 'ID': properties.get('systemAlertId'), 'Kind': alert_data.get('...
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def read_labeled_image_list(image_list_file): """Reads a .txt file containing pathes and labeles Args: image_list_file: a .txt file with one /path/to/image per line label: optionally, if set label will be pasted after each line Returns: List with all filenames in file image_...
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from typing import Dict from typing import Any def dict_argmax(d: Dict[Any, Any]) -> Any: """ Compute argmax for a dictionary with numerical values. """ argmax = None best_val = None for arg, val in d.items(): if argmax is None or val > best_val: argmax = arg best_val ...
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def subset_by_iqr(df, column, iqr_mult=3): """Remove outliers from a dataframe by column, including optional whiskers, removing rows for which the column value are less than Q1-1.5IQR or greater than Q3+1.5IQR. Args: df (`:obj:pd.DataFrame`): A pandas dataframe to subset column (st...
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def chars_different(box1, box2): """Count the number of characters that differ between box1 and box2""" diff = sum( 1 if i != j else 0 for i, j in zip(box1, box2) ) return diff
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def _leading_space_count(line): """Return number of leading spaces in line.""" i = 0 while i < len(line) and line[i] == ' ': i += 1 return i
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def by_time(elem): """ Returns associated times field of elem (elem assumed to be an instance of SPATLocation. """ return elem.times
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def find_pivot(unsorted, start, end): """ Find the pivot value using the Median of Three method in a Python list Expected Complexity: O(1) (time and space) :param unsorted: an unsorted Python list to find the pivot value in :param start: integer of starting index to find the pivot value in :par...
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def findpower2(num): """find the nearest number that is the power of 2""" if num & (num-1) == 0: return num bin_num = bin(num) origin_bin_num = str(bin_num)[2:] near_power2 = pow(10, len(origin_bin_num)) near_power2 = "0b" + str(near_power2) near_power2 = int(near_power2, base=2) ...
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def to_gradepoint(grade): # write an appropriate and helpful docstring """ convert letter grades into gradepoint :param str grade: A, A-, B+, B, B-, C+, C, C-, D, F :return: float """ gradepoint = 0 # initial placeholder # use conditional statement to set the correct gradepoint gradepoint = 4 if grade...
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import random def _random_selection(*args): """ Random selection for the genetic algorithm. This function randomly removes a solution from the population and returns it. :param args: list where args[0] is the population :rtype: Solution :returns: a solution from the population """ r...
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def align_bbox(src, tgt): """ Return a copy of src points in the coordinate system of tgt by applying a scale and shift along each coordinate axis to make the min / max values align Inputs: - src, tgt: Torch Tensor of shape (N, 3) Returns: - out: Torch Tensor of shape (N, 3) """ sr...
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def is_mark(codepoint): """Returns true for diacritical marks (combining codepoints).""" return codepoint.general_category in ("Mn", "Me", "Mc")
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def PZapTable (inUV, tabType, tabVer, err): """ Destroy specified table Returns 0 on success inUV = Python UV object tabType = Table type, e.g. "AIPS AN" tabVer = table version, integer err = Python Obit Error/message stack """ ###########################################...
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import socket def is_port_open(port_num): """ Detect if a port is open on localhost""" sock = socket.socket(socket.AF_INET, socket.SOCK_STREAM) return sock.connect_ex(('127.0.0.1', port_num)) == 0
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from functools import reduce def deepgetattr(obj, attr, default=None, raise_if_missing=False): """Recurses through an attribute chain to get the ultimate value.""" if isinstance(attr, str): attr = attr.split('.') try: return reduce(getattr, attr, obj) except AttributeError: if ...
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def sign(value): """ Returns an integer that indicates the sign of a number. Parameters: value (int): The number to get the sign of Returns: -1 if the number is negative, 0 if the number is 0, or 1 if the number is positive. """ if value < 0: return -1 elif...
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def inp_replace_token_value(lines,token,replace): """replace the value of a token in a list""" if type(lines)!=list: return False replaced=False for i in range(0, len(lines)): if lines[i]==token: if i+1<len(lines): lines[i+1]=replace replaced=True break return replaced
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from sympy.ntheory import primefactors def A001221(n: int) -> int: """omage(n). Number of distinct primes dividing n. """ return len(primefactors(n))
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def escape_leading_slashes(url): """ If redirecting to an absolute path (two leading slashes), a slash must be escaped to prevent browsers from handling the path as schemaless and redirecting to another host. """ if url.startswith('//'): url = '/%2F{}'.format(url[2:]) return url
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import re def get_lines_with(input_list, substr) -> list: """ Get all lines containing a substring. Args: input_list [str]: List of string to get lines from. substr (str): Substring to look for in lines. Returns: lines [str]: List of lines containing sub...
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def compare_h(new, high): """ Compare the latest temperature with the highest temperature. If higher, replace it. If not, remain the same. :param new: Integer, new!=EXIT, The lasted temperature input :param high: Integer, high!=EXIT, the highest temperature of all time :return: high """ if new > high: high =...
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def inclusion_one_param_from_template(arg): """Expected inclusion_one_param_from_template __doc__""" return {"result": "inclusion_one_param_from_template - Expected result: %s" % arg}
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def is_valid_bbox(rect): """Left/top must be >= 0, W/H must be > 0""" return rect[0] >= 0 and rect[1] >= 0 and rect[2] > 0 and rect[3] > 0
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import random def _shuffle(x): """ Shuffles an iterable, returning a copy (random.shuffle shuffles in place). """ x = list(x) random.shuffle(x) return x
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def get_command() -> str: """ __author__ = "Trong Nguyen" Prompt the user for a valid command and return the command input as uppercase. >>> get_command() """ command = input( "L)oad image S)ave-as" "\n2)-tone 3)-tone X)treme contrast T)int sepia P)osterize" ...
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import inspect def is_static_method(klass, name: str) -> bool: """ Check if the attribute of the passed `klass` is a `@staticmethod`. Arguments: klass: Class object or instance to check for the attribute on. name: Name of the attribute to check for. Returns: `True` if the...
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def bend_stress(mom, y, i): """ bend_stress(mom, y, i) Returns the bending stress given the applied moment, distance to the centroid, and moment of inertia. """ return mom * y / i
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import torch def calc_parameter_sparsity(p): """Calculates the sparsity percentage of a torch parameter. Args: p: torch parameter Returns: sparsity percentage (as float) with range [0.0, 1.0] """ x = torch.sum((torch.flatten(p) == 0).float()) return float(x) / p.numel()
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def _args_or_none(arg): """Return None if the arg is 'None' or the arg.""" if arg == 'None': return None return arg
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def special_structures(input_string): """ Replace some special structures by space. """ input_string = input_string.replace("'", " ") input_string = input_string.replace("(", " ") input_string = input_string.replace(")", " ") input_string = input_string.replace("1er ", " ") input_string ...
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import itertools def get_subsets(itemset, length): """ Gets subsets of an itemset with the specified length. :param itemset: Set of items :param length: Length :return: list of sets """ tuple_list = list((itertools.combinations(itemset, length))) set_list = [] for element in tuple_lis...
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def nonneg(s): """Returns all non-negative values.""" return filter(lambda x: x>=0, s)
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def join_rows(row_list_1, row_list_2): """Returns a list of list, in which element is the concatenation of the elements in the same position of row_list1 and row_list.""" if not row_list_1: return row_list_2 if not row_list_2: return row_list_1 row_list = [] for (row1, row2...
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def _calculate_PSF_amplitude(mag): """ Returns the amplitude of the PSF for a star of a given magnitude. Parameters ---------- `mag`: float Input magnitude. Returns ------- amp : float Corresponding PSF applitude. """ # mag/flux relation constants amp = 10*...
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def girder_job(title=None, type='celery', public=False, handler='celery_handler', otherFields=None): """Decorator that populates a girder_worker celery task with girder's job metadata. :param title: The title of the job in girder. :type title: str :param type: The type of the job in ...
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import time def format_time(timestamp=None, format=r"%Y%m%d-%H%M%S"): """ Return a formatted time string Commonly used format codes: %Y Year with century as a decimal number. %m Month as a decimal number [01,12]. %d Day of the month as a decimal number [01,31]. %H Hour (24-hour clock)...
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def min_rotation(target_degrees, source_degrees): """ Return the smallest rotation required to move from source angle to target angle:: min_rotation(20, 10) => 10 min_rotation(-340, 10) => 10 min_rotation(20, 370) => 10 """ return (target_degrees - source...
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def coerce_tuple(item): """Return item converted to tuple if not already tuple. :param Union[str, IKey, Iterable] item: item to coerce to tuple. :returns: coerced value of item as tuple. :rtype: Tuple[Any]. .. Usage:: >>> coerce_tuple('test') ('test',) >>> coerce_tuple(('...
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def int_to_rgb(rgb_int): """ Given an integer, converts to to RGB value. Any integer outside the range of (0, 16777215) will raise an invalid >>> int_to_rgb(-1) Traceback (most recent call last): ... ValueError: Integer must be in range [0, 16777215], got -1. >>> int_to_rgb(0) (0, 0,...
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import itertools def SplitNone(l): """Split a list using None elements as separator. Args: l: a list which may contain some None elements. Returns: A list of non-empty lists, each of which contains a maximal sequence of non-None elements from the argument list. """ groups = itertools.groupby(...
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import importlib def class_from_str(str_class): """ Imports the module that contains the class requested and returns the class :param str_class: the full path to class, e.g. pyspark.sql.DataFrame :return: the class requested """ split_str = str_class.split('.') class_name = split_str[...
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def _expand_total_pairs(total_pairs): """Expands total_pairs so that it has one key per direction. e.g., 'breitbart-foxnews' and 'foxnews-breitbart' exist as keys. If expansion is skipped, then total_pairs only has one key per pair of (unordered) elements. e.g., 'breitbart-foxnews' exists as a key but ...
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def count_rounds(half): """ Counts how many rounds were won in the half. """ rounds = 0 for img in half.find_all("img"): if not "emptyHistory.svg" in img["src"]: rounds += 1 return rounds
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def format_tag(template, tag_name, attrs): """ Format a template of a tag with attributes, so that: >>> format_tag('<{} {}>', 'span', {'id': 'foo'}) >>> '<span id="foo">' Note: use `klass` instead of the `class` attribute. """ return template.format(tag_name, ' '.join(['{}="{}"'.format(key.r...
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def lookup_expr(collection, key): """ Lookup a value in a Weld vector. This will add a cast for the key to an `I64`. Examples -------- >>> lookup_expr("v", "i64(1.0f)").code 'lookup(v, i64(i64(1.0f)))' >>> lookup_expr("[1,2,3]", "1.0f").code 'lookup([1,2,3], i64(1.0f))' >>> lookup_e...
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from typing import List def fill(index: int, item: float, length: int) -> List[float]: """ Make an array that contains `length` 0s, but with the value at `index` replaced with `item`. """ a = [0.0 for _ in range(length)] a[index] = item return a
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def starts_with_five_zeros(md5_hash: str) -> bool: """Whether the given md5 hash starts with five zeros.""" return md5_hash.startswith('00000')
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def _ReplaceVariables(data, environment): """Replace all occurrence of the variable in data by the value. Args: data: the original data string environment: an iterable of (variable name, its value) pairs Returns: the data string which replaces the variables by the value. """ result = data for ...
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def read_experiment_lines(readme_lines, start_marker_a="TGA", start_marker_b="###", end_marker="###"): """ This function iterates over a list of strings and searches for information about a desired experiment. The information is found by looking for sub-strings (markers) that e...
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import math def A000108(i: int) -> int: """Catalan numbers: C(n) = binomial(2n,n)/(n+1) = (2n)!/(n!(n+1)!). Also called Segner numbers. """ return ( math.factorial(2 * i) // math.factorial(i) // math.factorial(2 * i - i) // (i + 1) )
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def getFileInfo(filename: str): """Get file information from filename. Parameters ---------- filename : str Filename of CSV file Returns ------- date : str Date of the file time : str Time of the file folder : str Measurement folder of the file f...
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def point_within_bounds(x,y, bounds): """ Function for checking if a point is within a bounds from a raster :param x: x-coordiante :param y: y-coordinate :param bounds: raster bounds :return: boolean """ if (bounds.left < x) & (bounds.right > x): if (bounds.bottom < y) &...
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def name_generator(nn_name, nn_name2id): """ 生成paddle.nn类op的名字。 Args: nn_name (str): 名字。 nn_name2id (dict): key为名字,value为名字出现的次数-1。 """ if nn_name in nn_name2id: nn_name2id[nn_name] += 1 else: nn_name2id[nn_name] = 0 real_nn_name = nn_name + str(nn_name2id[nn...
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def stringify_list(list_: list, quoted: bool = False ) -> str: """Converts a list to a string representation. Accepts a list of mixed data type objects and returns a string representation. Optionally encloses each item in single-quotes. Args: list_: The li...
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def rename_modified_residues(mol): """ Renames residue names based on the current residue name, and the found modifications. The new names are found in `force_field.renamed_residues`, which should be a mapping of ``{(rename, [modification_name, ...]): new_name}``. Parameters ---------- ...
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import socket def resolve_fqdn_ip(fqdn): """Attempt to retrieve the IPv4 or IPv6 address to a given hostname.""" try: return socket.inet_ntop(socket.AF_INET, socket.inet_pton(socket.AF_INET, socket.gethostbyname(fqdn))) except Exception: # Probably using ipv6 pass try: ...
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async def check_tags(problem_tags, tags): """ To check if all tags are present in the problem tags. """ count = 0 for tag in tags: if "'" + tag + "'" in problem_tags: count += 1 return count == len(tags)
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import json def jsonRead(path): """Abre un archivo JSON y devuelve los datos del archivo. Argumentos: path (str): Ruta relativa hacia el archivo. Returns: data (Any): Datos contenidos en el JSON. """ with open(path) as json_file: try: data = json.load(json_f...
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import glob def get_bridges(vnic_dir='/sys/devices/virtual/net'): """Return a list of bridges on the system.""" b_regex = "%s/*/bridge" % vnic_dir return [x.replace(vnic_dir, '').split('/')[1] for x in glob.glob(b_regex)]
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from datetime import datetime def isdate(s_date: str, if_nan=False): """Check whether the date string is yyyymmdd format or not.""" if len(s_date) != 8: return False try: datetime.strptime(s_date, "%Y%m%d") return True except ValueError: return False except TypeErro...
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def _get_lines(filepath): """ Given a filepath, return a list of lines within that file. """ lines = None with open(filepath) as file: lines = file.readlines() return lines
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def _calculate_padding(kernel): """ Calculate padding size to keep the output matrix the same size as the input matrix. Parameters ---------- k: ndarray Convolution kernel Returns ------- out: tuple of tuple of int (row_pad_count_top, row_pad_count_bottom), (col_pad_cou...
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def cents_to_hz(F_cent, F_ref=55.0): """Converts frequency in cents to Hz Notebook: C8/C8S2_FundFreqTracking.ipynb Args: F_cent (float or np.ndarray): Frequency in cents F_ref (float): Reference frequency in Hz (Default value = 55.0) Returns: F (float or np.ndarray): Frequency...
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def ident(tensor_in): """ The identity function :param tensor_in: Input to operation. :return: tensor_in """ return tensor_in
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def evaluate_coefficients(coefficients,x): """Take a list of coefficients and return the corresponding polynomial evaluated at x-value x """ return sum(pair[1]*(x**pair[0]) for pair in enumerate(coefficients))
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def integrate(x_dot, x, dt): """ Computes the Integral using Euler's method :param x_dot: update on the state :param x: the previous state :param dt: the time delta :return The integral of the state x """ return (dt * x_dot) + x
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def merge(d1, d2): """Merges d2 into d1 without overwriting keys.""" left = d1.copy() right = d2.copy() for key in right.keys(): if key in left: left_is_dict = isinstance(left[key], dict) right_is_dict = isinstance(right[key], dict) if left_is_dict and right...
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def _format_links(link_x): """ Format links part :param link_x: list, which has several dicts in it :return: formatted string """ try: pairs = "" for _dict in link_x: pairs += _dict['rel'] + '-> ' + _dict['href'] + '\n' return pairs[:-1] except Exception:...
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def condition_flush_on_every_write(cache): """Boolean function used as flush_cache_condition to anytime the cache is non-empty""" return len(cache) > 0
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def ensure_dict(x): """Make sure ``x`` is a ``dict``, creating an empty one if ``x is None``. """ if x is None: return {} return dict(x)
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def __get_node_types(args: dict): """ Given the parsed arguments, returns a dictionary of flags representing the node types to be processed :param dict args: dictionary of parsed args :return: dictionary of node types """ out = dict(pose=False, hand=False, face=False) # check if only fac...
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import re def regex_escape(string: str) -> str: """Escape the given string for use as a regex.""" return re.escape(string)
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def sequence(left_validator, right_validator): """Given two validators, attempt to validate the first If successful, attempt to validate with the second """ def callback(value): """Accept a value to validate, return validation results""" okay, result = left_validator(value) if ok...
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def get_valid_classes_phrase(input_classes): """Returns a string phrase describing what types are allowed """ all_classes = list(input_classes) all_classes = sorted(all_classes, key=lambda cls: cls.__name__) all_class_names = [cls.__name__ for cls in all_classes] if len(all_class_names) == 1: ...
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import random def mutate_guess_i(old_guess, i): """randomly mutate single element in string""" ls_old_guess = list(old_guess) rand_value = str(random.randint(0, 9)) ls_old_guess[i] = rand_value return ''.join(ls_old_guess)
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def page_query_with_skip(query, skip=0, limit=100, max_count=None, lazy_count=False): """Query data with skip, limit and count by `QuerySet` Args: query(mongoengine.queryset.QuerySet): A valid `QuerySet` object. skip(int): Skip N items. limit(int): Maximum number of items returned. ...
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def ensure_leading_slash(path: str) -> str: """ Ensures that the given path has a leading slash. This is needed as mock paths are stored in the database with a leading slash, but flask passes the path parameter without one. """ if path[0] != "/": return "/" + path return path
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def get_dtype_str(dtype, byteorder="little"): """Parses dtype and byte order to return a type string code. Parameters ---------- dtype : `numpy.dtype` or `str` Either a dtype (e.g., ``numpy.uint32``) or a string with the type code (``'>u4'``). If a string type code and the first charact...
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