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def get_parent_language_code(parent_object): """ .. versionadded:: 1.0 Return the parent object language code. Tries to access ``get_current_language()`` and ``language_code`` attributes on the parent object. """ if parent_object is None: return None try: # django-parler u...
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def get_service_state_name(state): """ Translate a Windows service run state number to a friendly service run state name. """ return { 1: 'Stopped', 2: 'Start Pending', 3: 'Stop Pending', 4: 'Running', 5: 'Continue Pending', 6: 'Pause Pending', 7:...
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import random def getRandomBytes(size): """ Returns an array of `size` random integers representing bytes :param size: The size of the array :return: The array of random integers """ random.seed() a = [] for i in range(0, size): a.append(random.randint(0, 255)) return a
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def truncate_string(string, truncation, message = ''): """ Truncate a string to a given length. Optionally add a message at the end explaining the truncation :param string: A string :param truncation: An int :param message: A message, e.g. '...<truncated>' :return: A new string no longer th...
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def efficency_poly(cappa): """Calculate efficency for a given pump's typical number. The polynomial has been calculated applaying the curve fitting at nodes cappa .2 .3 .4 .5 .6 .7 .8 .9 1.0 1.1 1.2 eta .700 .850 .900 .916 .923 .928 .931 .932 .933 .935 .932 weights ones(cappa) ...
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import math def is_nan(val): """Test if a value is NaN Parameters ---------- val : obj A value Returns ------- bool Is it NaN? """ try: float(val) if math.isnan(float(val)): return True except (ValueError, TypeError): pass ...
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def update_speed_limit(intersection, new_speed): """ Updates the speed limit of the intersection :param intersection: intersection :param new_speed: new speed value :type intersection: Intersection :type new_speed: int :return: updated intersection """ return intersection.update_spee...
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import torch def centralize_gradient(x: torch.Tensor, gc_conv_only: bool = False) -> torch.Tensor: """Gradient Centralization (GC) :param x: torch.Tensor. gradient :param gc_conv_only: bool. 'False' for both conv & fc layers :return: torch.Tensor. GC-ed gradient """ size: int = x.dim() if ...
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import gzip def _compression_safe_opener(fname): """Determine whether to use *open* or *gzip.open* to read the input file, depending on whether or not the file is compressed. """ f = gzip.open(fname, "r") try: f.read(1) opener = gzip.open except IOError: opener = open ...
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from typing import List from typing import Optional def distance(v1: List[int], v2: List[int]) -> Optional[int]: """ Determine the distance between two vectors, i.e. the number of positions in which their value differs. :param v1: first vector :param v2: second vector :return: distance as describe...
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def get_param_dict(self): """Get the parameters dict for the ELUT of PMSM at the operationnal temperature and frequency Parameters ---------- self : ELUT an ELUT_PMSM object Returns ---------- param_dict : dict a Dict object """ # getting parameters of the abstract ...
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def to_comma_sep(list_values): """ Removes any None, False or blank items from a list and then converts the list to a string of comma separated values. """ default = '--' if list_values: actual_vals = [item for item in list_values if item] unique_vals = list(set(actual_vals)) ...
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def phase_sync(frequency, phase, elapsed_time): """ Calculate what the phase should be for a carrier at the given frequency after the given time has elapsed. """ return phase + (elapsed_time * frequency * 2)
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def rateTCan24(params: dict, states: dict) -> float: """ Summary Parameters ---------- params : dict tau: float Time constant of the process. k: float Gain of the process. states : dict TCan: float TCan is the simulated or measured ca...
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def _find_all_groups(group_by, md_list): """ Find all possible values for group_by :param group_by: name of the metadata to find values on :type group_by: str :param md_list: list of metadata to find into :type md_list: dict :return: the list of all unique possible values for this group ...
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def to_css_length(x): """ Return the standard length string of css. It's compatible with number values in old versions. :param x: :return: """ if isinstance(x, (int, float)): return '{}px'.format(x) else: return x
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from typing import List from typing import Dict def has_valid_format(data: List[Dict]) -> bool: """ Check data format, usually, from plugin results and return True if data format is value. False otherwise. """ format_keys = ("library", "version", "severity", "summary", "advisory") # Check dat...
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def count_lines(file_name): """ Counts number of non-empty lines in the file `file_name` Args: file_name (str): Path to file Returns: int: Number of non-empty lines list(str): List of strings, one str for each line """ with open(file_name) as f: lines = [line.rs...
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def getAlerts(fc, dt): """ Count the number of alerts for a given date/time (dt) """ res = 0 if "alerts" in fc: if len(fc["alerts"]) > 0: for i in range(0, len(fc["alerts"])): alert = fc["alerts"][i] if dt >= alert["start"] and dt <= alert["end"]:...
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def read_atom_file(file): """Read file with atoms label Args: file (str): Name of file with atoms labels Returns: list: atoms labeled as <Residue Name> <Atom Name> """ atoms = [line.rstrip('\n').split() for line in open(file, "r")] atoms = [[a[0] + " " + aa for aa in a[1::]] fo...
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def find_branch(lst, i): """Finds the whole branch that is rooted from the given node. Args: lst: a list that contains a pre-order traversal of a free-tree i: the index of the actual node Returns: int: the given i value int: the index of the end of the branch + 1 ""...
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def obter_pos_c(p): """ Seletor coluna. Devolve a componente coluna c da posicao p. :param p: tuple, posicao do tabuleiro de jogo. :return: string, coluna da posicao. """ return p[0]
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def uniq(seq, key=None): """ Removes duplicate elements from a list while preserving the order of the rest. The value of the optional `key` parameter should be a function that takes a single argument and returns a key to test the uniqueness. """ key = key or (lambda x: x) seen = set() u...
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def remove_duplicates(package_leaflets): """ Keep only leaflets with unique product_name. If there is already the leaflet with same product_name - skip this leaflet :param package_leaflets: array of processed leaflets :return: array of unique leaflets """ # save only leaflets with unique ...
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from datetime import datetime def filter_future_amendments(versions): """ Take a list of amendments, and only return a list of those that are in the future. """ today = datetime.today() amendments = [v for v in versions if v['by_date'] > today] amendments.sort(key=lambda v: v['by_date']) retur...
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def growthClass(gLevel): """Determine growth class based on growth level""" if gLevel >= 0.75: return "+++" elif gLevel >= 0.50: return "++" elif gLevel >= 0.35: return "+" elif gLevel >= 0.25: return "-" else: return "--"
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def garrisonkimmel(x): """Garrison-Kimmel 2014 Stellar-Halo-Mass function at redshift zero. MNRAS 438, 2578–2596 (2014) Equation 4 Keyword arguments: x -- array of peak halo masses """ tr = 3.0e6 * (x/1.0e10)**1.92 return tr
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def resolved(issue): """Is the issue resolved?""" return issue.fields.status.name in ['Done', 'Resolved', 'Fertig', 'Closed']
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def deep_tuple(array_like): """convert nested tuple/list mixtures to pure nested tuple""" if isinstance(array_like, (list, tuple)): return tuple(map(deep_tuple, array_like)) return array_like
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def generate_module_cmd(module, input_json, output_json): """Generates a command string to use for subprocess calling Parameters ---------- module: str The current module being run input_json: str The path of the input for the module output_json: str The path of the output for the m...
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def create_segment_allele_counts(segment_data, allele_data): """ Create a table of total and allele specific segment counts Args: segment_data (pandas.DataFrame): counts of reads in segments allele_data (pandas.DataFrame): counts of reads in segment haplotype blocks with phasing Returns: ...
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def sec2hms(seconds): """Converts seconds to hours, minutes, seconds :param int seconds: number of seconds :return: (*tuple*) -- first element is number of hour(s), second is number of minutes(s) and third is number of second(s) :raises TypeError: if argument is not an integer. """ if n...
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def dict_value_add(dict1, dict2): """Add values with same keys from two dictionaries.""" result = {key: dict1.get(key, 0) + dict2.get(key, 0) for key in set(dict1) | set(dict2)} ''' # This has an issue of only keeping track of >0 values! from collections import Counter result = dic...
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def load_shefcodefirst_python_members(file_path): """Given the `file_path` to the file containing a list of #ShefCodeFirst Python course members, this function loads them into a list and return such list back.""" # Explicitly open file with the UTF-8 encoding to ensure non-standard English characters ...
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def get_fmriprep_outlier_volumes_from_confounds(confounds_df): """extract which volume numbers are outliers from the fmriprep confounds df. Returns: bad_volumes: list eg [34, 35, 100, 150] """ # get the motion columns motion = confounds_df.filter(regex='motion') # find any rows w...
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def setup_and_run_hass(edge, top_process=False): """ Setup HASS and run. Block until stopped. Will assume it is running in a subprocess unless top_process is set to true. """ edge.start() # exit_code = int(edge.block_till_stopped()) # if not top_process: # sys.exit(exit_code) ...
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def shell_sort(array): """ Sorts the given array of integers using the Shell Sort algorithm Time Complexity : O((len(array))^2) Space Complexity : O(len(array)) :param array: A List of integers. :return: returns the array sorted """ # calculate the gap using Knuth's formula gap = 1 ...
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def assert_errors(result, expected_errors): """Assert that result errors match expected errors Uses substring matching to coorelate expected to actual errrors. Raise if any expected error is not matched or if any actual errors are found that were not matched by an expected error. This function ha...
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def by_key(key): """ Returns a function that gets an item by the specified key. Example: ( Slinkie(items) .sort(by_key('date')) ) """ return lambda items: items[key]
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def _no_stop_codon(aa_seq): """ Returns True if a sequence does not contain a stop codon, otherwise returns False """ if '*' not in aa_seq: return True else: return False
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def area(coords): """ calculate area of a polygon :param coords: vertexes of polygon e.g. [[1, 1], [3, 1], [2, 2]] :returns: area of polygon """ w = 0.0 for i in range(len(coords)): j = (i + 1) % len(coords) w += (coords[j][0] + coords[i][0]) * (coords[j][1] - coords[i][...
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def _ProcessCcSD(fmt): """Convert a 'cc' sort directive into SQL.""" # Note: derived cc's are included automatically. # Note: This sorts on the best Cc, not all Cc addresses. # Being more exact might require GROUP BY and GROUP_CONCAT(). left_joins = [ (fmt('Issue2Cc AS {alias} ON Issue.id = {alias}.issu...
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def get_bit(data: bytes, num: int) -> int: """ Get specified bit from bytes. :param bytes data: data :param int num: bit position :return: selected bit value :rtype: int """ base = int(num // 8) shift = 7 - int(num % 8) return (data[base] >> shift) & 0x1
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def mix(x, y, ratio): """Convex combination of two numbers""" return (1 - ratio)*x + ratio*y
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def import_dg_updates(file_path='/Users/reedd/Documents/projects/PaleoCore/projects/mlp/data_cleaining_170412/DG_updates.txt'): """ Function to read data from a delimited text file :return: list of header values, list of row data lists """ dbfile = open(file_path) data = dbfile.readlines() d...
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def media_url(context, path, safe=None): """ Returns the media url given a partial path. """ return context['site'].media_url(path, safe)
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def next_instruction_is_function_or_class(lines): """Is the first non-empty, non-commented line of the cell either a function or a class?""" for i, line in enumerate(lines): if not line.strip(): # empty line if i > 0 and not lines[i - 1].strip(): return False con...
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def contains(bbox, point): """Checks if point is within bbox. bbox: [[x0, x1], [y0, y1]] point: [x, y] -> bool """ return (bbox[0][0] <= point[0] <= bbox[0][1] and bbox[1][0] <= point[1] <= bbox[1][1])
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def is_digit(value: str) -> bool: """Return if ``value`` is number (decimal or whole)""" if value.count('.') == 1 and value.replace('.', '').isdigit() or value.isdigit(): return True return False
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def get_ms(delta): """Convert a datetime.timedelta into the corresponding milliseconds. >>> from datetime import timedelta >>> get_ms(timedelta(1, 1, 1, 1)) 86401001.001 >>> get_ms(timedelta(days=1)) 86400000.0 >>> get_ms(timedelta(seconds=15)) 15000.0 >>> get_ms(timedelta(milliseco...
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def KtoC(T_K): """Converts Kelvin to Celsius.""" return T_K - 273.15
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from typing import Optional import re def get_server_id(data: str) -> Optional[int]: """ Extracts six digit id of server. :param data: Input data. :return: Server id number. """ server_id = re.findall(r"#(\d{6})", data) if server_id: return int(server_id[0]) else: retur...
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def clean_address(data): """Clean the address feature.""" data['Indirizzo'] = data['Indirizzo'].str.replace('[', '').str.replace( ']', '').str.replace('\'', '') return data
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def is_keys_str_decimals(dictionary: dict): """ Checks if the keys are string decimals Args: dictionary: Dictionary object to check Returns: True if keys are numerical strings """ keys = dictionary.keys() are_decimals = [isinstance(k, str) and k.isdecimal() for k in keys...
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def tolerance(dimension_mm, itg): """ Returns the tolerance in micrometers using ISO standard using the given dimension and ITG number """ return 10 ** ((itg - 1) / 5) * (0.45 * dimension_mm ** (1 / 3) + dimension_mm / 1000)
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def to_list(data_in): """Convert the data into a list. Does not pack lists into a new one. If your input is, for example, a string or a list of strings, or a tuple filled with strings, you have, in general, a problem: - just iterate through the object will fail because it iterates through the ch...
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def compile_trace(destination): """ Given a destination list, returns a maintenance function that appends a trace string to the given list every time it is called. """ def trace(net, task, result): nonlocal destination destination.append("Task {}: {}".format(task.name, result.__name__)) return trace
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import math def solve_tilted_rectangle(xend, yend, length, width, angle, padding=0.0, pad_upper=True): """ Given a rectangle of a certain length, width and orientation, knowing the coordinates of the centre of one end of the rectangle, return the coordinates of the corn...
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def formula2components(formula): """Convert a glass/any composition formula to component dictionary. Parameters ---------- formula : string Glass/any composition for e.g. 50Na2O-50SiO2. Returns ------- dictionary Dictionary where keys are components of glass/any composition...
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def c_0(z: float) -> float: """Calculates the orography factor, taken as 1,0 Args: z (float): vertical distance Returns: float: orography factor """ return 1.0
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import inspect def get_init_params(obj): """ Returns a list of the parameters entering the `__init__` method of the given object `obj`. Parameters ---------- obj: Serializable Returns ------- list of str """ init_params = list(inspect.signature(obj.__init__).parameters.keys()...
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from typing import Dict from typing import Any def purge_none(d: Dict[Any, Any]) -> Dict[Any, Any]: """Purge None entries from a dictionary.""" return {k: v for k, v in d.items() if v is not None}
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def check_args(args): """Checks to see if at least one of the character options was set""" if not (args.uppercase_ascii and args.lowercase_ascii and args.numerical and args.punctuation): return False return True
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def sample_statistics(image, geom, numPixels, scale): """ Sample within a region of a single band float image, returning a dictionary of statistics: accessed as ["values"]["<stat>"] Note this is an estimate""" bn = image.bandNames().getInfo()[0] fc = image.sample(region=geom, numPixels=numPixels...
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import re def _normalize_samples(samples): """Normalizes the samples in the given function body. Normalization just means that we redact inlined function names. This is done so that a bit of templating doesn't make two function bodies look distinct. Namely: template <typename T> __attribute__((noinline)...
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def get_bin_list(n, nmax): """ return a list of digits of the binary representation of n nmax is the maximum theoretical value of n, used to add 0 at the front of the list if necessary """ if n == 0: return [0 for _ in range(len(bin(nmax))-3)] n = bin(n) digits = [] for i in rang...
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import math def rotate(v1, angle): """ rotates the vector by an angle around the z axis :param v1: The vector that will be rotated :param angle: The angle to rotate the vector by :return: The vector rotated around the z axis by the angle """ x, y, z = v1 # Rotation transformation ...
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def has_prim_rou(modulus: int, degree: int) -> bool: """ Test whether Z/qZ has a primitive 2d-th root of unity. """ return modulus % (2 * degree) == 1
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def normalize_option_name(name): """Use '-' as default instead of '_' for option as it is easier to type.""" if name.startswith("--"): name = name.replace("_", "-") return name
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def get_tag2idx(df): """ Returns tags maps from a given dataframe df Outputs: tag2idx: map from tag to idx idx2tag: map from idx to tag """ tag_values = list(df["tag"].unique()) + ['PAD'] tag2idx = {tag:idx for idx, tag in enumerate(tag_values)} idx2tag = {idx:tag for tag, idx in tag2idx.items()} return tag...
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def tag_to_rtsip(tag): """Convert tag to relation type, sense, id, and part.""" rel_type, rel_sense, rel_id, rel_part = tag.split(":") return rel_type, rel_sense, int(rel_id), rel_part
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def to_str(message): """ Returns the string representation of an arbitrary message. """ if isinstance(message, str): return message else: return message.decode('utf-8')
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def to_number(number): """ Converts a string to a int if possible, else a float. :param number: The string to convert to a number :type number: string :return: The converted number :rtype: : int or float depending on the format of the string """ try: return int(number) exc...
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def is_palindromic(n): """Return True iff the given integer is palindromic.""" xs = str(n) return xs == "".join(reversed(xs))
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def strput(a,inp,pos): """ Put a substring into a string.""" temp = list(a) temp[pos:pos+len(inp)] = list(inp) return ''.join(temp)
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def get_images_type(image_file): """Returns 'images_multiview' or 'images_multiview_frontOnly.""" return image_file.split('/')[-5]
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def to_DetectedObject_list(dos): """Get a list of the DetectedObjects in a Kwiver DetectedObjectSet""" return list(dos)
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import ctypes def destructor(cfunc): """ Make a C function a destructor. Destructors accept pointers to void pointers as argument. They are also wrapped as a staticmethod for usage in classes. :param cfunc: The C function as imported by ctypes. :return: The configured destructor. """ ...
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from typing import Tuple def parse_yearmon(yearmon: str) -> Tuple[int, int]: """ Parse a YYYYMM string and return a (year, month) integer tuple """ return int(yearmon[:4]), int(yearmon[4:])
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from typing import Union from typing import List import gzip def basic_gzip_load(file_path: str, max_lines: Union[int, None] = 100_000) -> List[str]: """ Load sentences from specified gzipped text file. It is expected that archived file is going to large, thus maximum amount of lines to load may be sp...
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def applyBandOffset(C, height, bandName, lines, inter=False): """Produce bands from a list of lines. Bands are defined relative to lines by means of offsets of the top and bottom heights of the lines. Bands may also be interlinear: defined between the bottom of one line and the top of the next lin...
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def _TransformGuestPolicyDescription(resource): """Returns a length-limited guest policy description.""" max_len = 30 # Show only the first 30 characters if description is long. description = resource.get('description', '') return (description[:max_len] + '...') if len(description) > max_len else de...
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def make_callback_dictionary(param_dict, status_flag, status_msg): """Utility function that adds extra return values to parameter dictionary.""" callback_dict = param_dict.copy() callback_dict['status_flag'] = status_flag callback_dict['status_msg'] = status_msg return callback_dict
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import requests def system_check(gc): """Check DSA connection with the girder client Args: gc: girder client Returns: int: 0 for successful connection, 1 otherwise """ try: _ = gc.get("/system/check") except requests.exceptions.HTTPError as err: print(f"Plea...
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from typing import BinaryIO def _bytes_match(fd: BinaryIO, expected: bytes) -> bool: """Peeks at the next bytes to see if they match the expected.""" try: offset = fd.tell() data = fd.read(len(expected)) fd.seek(offset) return data == expected except IOError: return...
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def topk_accuracy(outputs, labels, recalls=(1, 5)): """Return @recall accuracies for the given recalls.""" _, num_classes = outputs.size() maxk = min(max(recalls), num_classes) _, pred = outputs.topk(maxk, dim=1, largest=True, sorted=True) correct = (pred == labels[:,None].expand_as(pred)).float()...
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def convert_to_bool(bool_string): """ because bool(str) will check if len(str) > 0 or 0 :param bool_string: "True"/"False" :return: True or False, and raise Value error on fail """ if bool_string.lower() == "true": return True elif bool_string.lower() == "false": return False...
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def min_cmp(L, cmp=None): """ Returns the smallest item of a list (or iterable) with respect to a comparison function. INPUT: ``L`` -- an iterable ``cmp`` -- an optional comparison function. ``cmp(x, y)`` should return a negative value if `x < y`, `0` if `x == y`, and a posit...
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def scalar2str(arg, title=''): """ Return a single li element with the value and possibly the title of the item. Handles strings, ints, and floats. """ assert not (isinstance(arg, dict) or isinstance(arg, list) or isinstance(arg, tuple)) if title == '': title_str = '' else: title_str = f'<strong...
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import re def get_first_stacktrace(stderr_data): """If |stderr_data| contains stack traces, only returns the first one. Otherwise returns the entire string.""" # Use question mark after .+ for non-greedy, otherwise it will match more # than one stack trace. sanitizer_stacktrace_regex = r'ERROR: [A-z]+Sanit...
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def check_pv(pv): """ Check input argument `pv`. Parameters ---------- pv : int Percentile of the pairwise distance distribution at which to truncate during variogram fitting. Returns ------- int Raises ------ ValueError : `pv` lies outside range (0, 100] ...
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def tolerance(a, b, e): """Return if a-b is within tolerance e""" d = a - b if d < 0: d = -d if a != 0: e = e * a if e < 0: e = -e return d <= e
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import requests from typing import Optional def is_successful_response(response: requests.models.Response) -> bool: """ Checks status code of response for success. :param response: The response to check. :type response: requests.models.Response :return: Was response successful? :rtype: bool ...
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def genQrelStr(queryId, docId, relGrade): """Produces a string representing one QREL entry :param queryId: question/query ID :param docId: relevanet document/answer ID :param relGrade: relevance grade :return: a string representing one QREL entry """ return f'{queryId} 0 {docId} {re...
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def in_group(user, groups): """Returns a boolean if the user is in the given group, or comma-separated list of groups. Usage:: {% if user|in_group:"Friends" %} ... {% endif %} or:: {% if user|in_group:"Friends,Enemies" %} ... {% endif %} """ g...
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def _swap_labelmap_dict(labelmap_dict): """Swaps keys and labels in labelmap. Args: labelmap_dict: Input dictionary. Returns: A dictionary mapping class name to class numerical id. """ return {v:k for k, v in labelmap_dict.items()}
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import time import random import math def slow_prime_check(number): """This function is an intentionally slow and simple prime number check.""" # average wait time ~50ms. time.sleep(100 / 1000 * random.random()) for i in range(2, int(math.sqrt(number)+1)): if number % i == 0: ret...
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def compare(x,y): """compares two numbers and returns 1 if x>y, 0 if x=y, and -1 if x<y""" if x>y: return 1 if x == y: return 0 if x<y: return -1 return "wtf"
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def linear_system(x, K): """ A linear system which scales a signal by a factor""" return K * x
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def get_outdir_simupara(fp, line): """ get output directory and simulation parameters (in format: time steps) :param fp: opened file :param line: current line :return: output directory and simulation parameters Note: output directory is '' if not specified and list of simulation parameters...
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