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def calculate_error_rates(point_to_weight, classifier_to_misclassified): """Given a dictionary mapping training points to their weights, and another dictionary mapping classifiers to the training points they misclassify, returns a dictionary mapping classifiers to their error rates.""" error_dict = dict...
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from datetime import datetime def make_message(name: str) -> str: """ Takes a name and returns a message with the name and the time :param name: str Which is the name for the message to refer to :returns: str The message containing the name and the time """ time = datetime.now().strftime("%H:%...
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from pathlib import Path def cookiecutter_cache_path(template): """ Determine the cookiecutter template cache directory given a template URL. This will return a valid path, regardless of whether `template` :param template: The template to use. This can be a filesystem path or a URL. :ret...
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def calc_get_item(func, in_data, **kwargs): """[GetItem](https://docs.chainer.org/en/v4.3.0/reference/generated/chainer.functions.get_item.html) Extract part of an array. This operation is zero FLOPs. Most of tensor libraries have view feature, which doesn't actually create a new array unless necessary...
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def period(freq): """ Convert array of frequencies to periods. """ return 1./freq
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def is_prepositional_tag(nltk_pos_tag): """ Returns True iff the given nltk tag is a preposition """ return nltk_pos_tag == "IN"
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def rename_clusters(name_dict, df, column_name): """ Takes in a dataframe, column name of the cluster, dictionary in the format: {'original_cluster_name' : 'new_cluster_name'}. Returns a dataframe with the new cluster names. """ df = df.copy() keys = list(name_dict.keys()) for k...
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from pathlib import Path from typing import List def read_csv_to_list(path: Path) -> List[str]: """Takes in a csv file path and splits the strings and puts them into a list Args: path (Path): CSV file path Returns: List[str]: List of strings from the file """ list_of_strings ...
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def expand(path:list, conc_var:list) -> list: """ expand( path=[1, 2, 3], conc_var=[['a', 'c'], ['b', 'c']] ) ---> [[1, 'a', 2, 'c', 3], [1, 'b', 2, 'c', 3]] gives the detailed path! Parameters ---------- path : list The ids of formulas that form a path. conc_var...
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def get_interface_state_from_api(data, index=-1, name="_"): """Process data from sw_interface_dump API and return state of the interface specified by name or index. :param data: Output of interface dump API call. :param index: Index of the interface to find. :param name: Name of the interface to fi...
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def preboil_grav(target_og: float, preboil_vol: float = 7, postboil_vol: float = 6): """Computes preboil gravity to to verify before concluding mash Args: preboil_vol: Pre-boil volume in gal target_og: Target original gravity for primary fermentation e.g. 1.040 pos...
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def parse_size(size): """ Converts a size specified as '800x600-fit' to a list like [800, 600] and a string 'fit'. The strings in the error messages are really for the developer so they don't need to be translated. """ first_split = size.split('-') if len(first_split) != 2: raise Att...
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def prepare_deck(deck, number_of_cards): """Prepare sub_deck, from deck leaving starting number_of_cards cards.""" sub_deck = deck.copy() while len(sub_deck) != number_of_cards: sub_deck.pop() return sub_deck
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def get_catalog_record_preferred_identifier(cr): """Get preferred identifier for a catalog record. Args: cr (dict): A catalog record. Returns: str: The preferred identifier of e dataset. If not found then ''. """ return cr.get('research_dataset', {}).get('preferred_identifier', ''...
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import pickle def encode_message(topic, data): """Encode a message for sending via 0MQ Given a string topic name and a pickle-able data object, encode and prep the data for sending via `send_multipart` Returns a list of the form: [ Bytes object of String (UTF-8), Pick...
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import pathlib from typing import List def find_all_detectors(rootdir: pathlib.Path, prefix: str = 'SingleCell') -> List[str]: """ Find all the detectors under the root directory If your directories look like this: * ``/data/Experiments/2017-01-30/SingleCell-foo`` * ``/data/Ex...
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from typing import Iterable import functools import operator def product(iterable: Iterable): """ Multiplies all elements of iterable and returns result ATTRIBUTION: code provided by Raymond Hettinger on SO https://stackoverflow.com/questions/595374/whats-the-function-like-sum-but-for-multiplication-...
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def remove_spawning_profile(intersection, spawning_profile): """ Removes a spawning profile to an intersection :param intersection: intersection :param spawning_profile: spawning profile to be removed from intersection :type intersection: Intersection :type spawning_profile: SpawningProfile ...
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import io def formatted_text_to_markdown(ft): """ Simple method to convert formatted text to markdown. Does not escape special characters. """ s = io.StringIO() for f, t in ft: if f == "": s.write(t) elif f == "underline": s.write(f"__{t}__") elif f ...
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import math def transform(anchor_coords, reg_targets): """ Applies the bounding box regression transformation to an anchor box. :param anchor_coords: numpy array of the anchor coordinates: [x1, y1, x2, y2] :param reg_targets: numpy array of the bounding box regression parameters: [tx, ty, tw, th] ...
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def preloader(align="center"): """ Returns a quick preloader html snippet. :param align: string equal to "left", "center" (default), or "right" """ return { 'align': align, }
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def parse_labels_voc(label_file): """ Definition: Parses label file to extract label and bounding box coordintates. Parameters: label_file - list of labels in images Returns: all_labels - contains a list of labels for objects in the image all_coords - contains a list of coordinates for objects in image """ ...
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def finish(response): """ Transitions the execution to completion. Args: response: The object to return to the execution's invoker. """ def action(state): return state.finish(response) return action
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def get_location_string( feature_text: str) -> str: """ Args: feature_text: endswith '\n' For example: ' CDS complement(join(<360626..360849,360919..360948, ' 361067..361220,361292..361470,361523..>361555)) ' ...
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def squareMean3( array, centerPixel ): """ Kernel neighborhood function for focal map algebra. Reutrns mean of a 3x3 square array. @param array - array from which to retrieve the neighborhood kernel @param centerPixel - (i,j) corrdinates of center pixel of kernel in the array @return - mean of 3x3 s...
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def _get_provisioning_state(instance): """Return the provisioning state from the instance result if present.""" if instance.get('provisioning_state'): return instance.get('provisioning_state') elif instance.get('properties'): return instance.get('properties').get('provisioning_state') el...
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import re def get_master_names(desired_master_state, name_regex): """Returns masters found in <desired_master_state> that match <name_regex>. Args: desired_master_state: A "desired_master_state" object, e.g. as returned by desired_state_parser Returns: [str1, str2, ...] All masters found in <d...
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import re def is_passport_valid(p): """ byr (Birth Year) - four digits; at least 1920 and at most 2002. iyr (Issue Year) - four digits; at least 2010 and at most 2020. eyr (Expiration Year) - four digits; at least 2020 and at most 2030. hgt (Height) - a number followed by either cm or in: If c...
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import math def slopeAngle(p1,p2): """Returns the minimum angle the line connecting two points makes with the x-axis. Args: p1 ([tuple]): point p1 p2 ([tuple]): point p2 Returns: [float]: minimum angle between x-axis and line segment joining p1 and p2 """ try : m...
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def get_usrid_from_league(league): """ get user id from a league and put them into a list :param league: LeagueDto: an object contains league information :return: usrid """ entries = league['entries'] usrid = [] for entry in entries: usrid.append(entry['playerOrTeamId']) usri...
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def _event_QSlider(self): """ Return value change signal for QSlider """ return self.valueChanged
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def vertical_strip_gridmap(height, alternating=True): """ Returns a function that determines the pixel number for a grid with strips arranged vertically. :param height: grid height in pixels :param alternating: Whether or not the lines in the grid run alternate directions in a zigzag :return: mappe...
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def parse_port_range(port_range_or_num): """Parses a port range formatted as 'N', 'N-M', or 'all', where N and M are integers, into a minimum and maximum port tuple.""" if port_range_or_num.lower() == 'all': return 0, 65535 try: port = int(port_range_or_num) return port, port ...
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from typing import List from typing import Counter def get_base_freq(reads: List[str]): """ Returns the aggregate frequency of bases in the sequencing reads >>> get_base_freq(["NAACGTTA"]) Counter({'A': 3, 'T': 2, 'N': 1, 'C': 1, 'G': 1}) >>> get_base_freq(["AACGTTA", "CGCGTTT"]) Counter({'T':...
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from typing import Dict from typing import Any def default_style() -> Dict[str, Any]: """Define default values of the pulse stylesheet.""" return { 'formatter.general.fig_width': 13, 'formatter.general.fig_chart_height': 1.5, 'formatter.general.vertical_resolution': 1e-6, 'form...
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def get_intervention_label(method_name, base_intervention_name): """ Maps raw method name to a readable name. Args: method_name (str): name of the folder in the experiments. base_intervention_name (str): filename in `configs/simulation/intervention/` folder. Returns: (str): a r...
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def fen_to_board_pieces(fen, piece, n=8): """ :param str fen: The FEN string describing a position (state) in a Racing Kings Chess board. :param str piece: Which piece type we want to find the positions. E.g. 'K', 'k', 'B', 'b' :param int n: Chess game dimension (should always be 8). :retu...
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def is_title_case(line): """Determine if a line is title-case (i.e. the first letter of every word is upper-case. More readable than the equivalent all([]) form.""" for word in line.split(u' '): if len(word) > 0 and len(word) > 3 and word[0] != word[0].upper(): return False return Tr...
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def sum_digits(n : int) -> int: """ Given a non-negative integer n, return the sum of its digits. Parameters ---------- n : int number to return the sum of Returns ------- int sum of numbers digits """ if n == 0: return 0 x = sum_digits(n // 10) + (...
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from typing import Dict from typing import Any def replace_module_prefix( state_dict: Dict[str, Any], prefix: str, replace_with: str = "", ignore_prefix: str = "" ): """ Remove prefixes in a state_dict needed when loading models that are not VISSL trained models. Specify the prefix in the keys th...
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def dict_to_str(d): """Pretty print contents of a dict, with fixed width as [KEY] : [VALUE]""" return "\n".join(["{0: <25}: {1}".format(k,v) for k,v in d.items()])
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import requests def catfact(context) -> str: """Get a random cat fact""" return requests.get("https://catfact.ninja/fact").json()["fact"]
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import torch def kullback_leibner(p, q, batch=False): """Calculates Kullback-Leibner Divergence of two probability densities Args: p, q: density values (must be all in range [0..1]) batch: if True, will return summed KL, divided by batch shape Returns: KL divergence, summed and divi...
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import re def _is_ignored(filename, ignored_paths): """ Check if the file should be ignored :type filename: str :param filename: Name of file check :type ignored_paths: list :param ignored_paths: List of regular expressions we should validate against :returns: bool -- True if the file...
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def numpy(tensor): """Convert a torch.tensor to a 1D numpy.ndarray.""" return tensor.cpu().detach().numpy().ravel()
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import json def get_tissue_mappings(mapping_filename): """Return a dictionary that maps tissue names to anatomical systems and organs""" with open(mapping_filename, 'r') as mappings_file: mapping_dict = json.load(mappings_file) return mapping_dict['tissues']
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def calc_damped_vs_kramer_1996(vs, xi): """ Calculates the damped shear wave velocity Ref: Eq 7.9 from Kramer (1996) :param vs: :param xi: :return: """ return vs * (1.0 + 1j * xi)
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def _get_period_from_imt(imtstr): """ Return a float representing the period of the SA IMT in the input. Args: imtstr (str): A string representing an SA IMT. Returns: float: The period of the SA IMT as a float. """ return float(imtstr.replace('SA(', '').replace(')', ''))
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def valid_interface_number(request): """ Fixture that yields valid interface numbers. """ return request.param
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from datetime import datetime def parse_time(value: str) -> datetime: """Parse and convert JSON encoded string to a datetime object Parses a ``str`` and converts it to a ``datetime`` object. If the string is not a valid JSON (JavaScript) encoded datetime object, this function will return the minimum ...
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import json def get_user_parameters(job): """ Returns the user parameters that were defined in CodePipeline. """ return json.loads( job["data"]["actionConfiguration"]["configuration"]["UserParameters"] )
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import random def wait_for_small_enough_number(small_number=10, max_number=50, print_it=True): """ What comes in: Two optional positive integers, with the second greater than the first, and an optional indicator for whether to print intermediate results. What goes out: Returns the numbe...
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def get_method_identifier(qualified_name): """Takes com.some.thing.Class:method and returns Class_method.""" parts = qualified_name.split(".") method_identifier = parts[-1] return method_identifier.replace(":", "_")
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def _make_emm_plugin_finalizer(handle, allocations): """ Factory to make the finalizer function. We need to bind *handle* and *allocations* into the actual finalizer, which takes no args. """ def finalizer(): """ Invoked when the MemoryPointer is freed """ # At e...
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import re def helper(filename): """ Reads file and build dictionary with words and their quantities in k,v :param filename: the file to be read :return: a dict with word: quantity """ # get words from file (split by space) words = [w for line in open(filename).readlines() for w in line.sp...
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import re def FileExtension(file_name): """Return the file extension of file 'file' should be a string. It can be either the full path of the file or just its name (or any string as long it contains the file extension.) Example #1: input (file) --> 'abc.tar.gz' return value --> 'tar.gz...
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import random def gen_fake_cpu_work(num_cpus: int = 1) -> tuple: """Generates a fake CPU times. :param num_cpus: number of CPU to simulate, defaults to 1 :type num_cpus: int, optional :return: work statistics -> number of CPUs, wall time, CPU time, single CPU time and io time :rtype: tuple ""...
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def literal_unicode_representer(dumper, data): """ Use |- literal syntax for long strings """ if '\n' in data: return dumper.represent_scalar(u'tag:yaml.org,2002:str', data, style='|') else: return dumper.represent_scalar(u'tag:yaml.org,2002:str', data)
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def get_integer(request, key): """Returns the first value in the request args for the given key, if that value is an integer. Otherwise returns None. """ if not request.args or key not in request.args: return None value = request.args[key][0] if not value.isdigit(): return None ...
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import ast def _non_kw_only_args_of(args: ast.arguments) -> list[ast.arg]: """Return a list containing the pos-only args and pos-or-kwd args of `args`""" # pos-only args don't exist on 3.7 pos_only_args: list[ast.arg] = getattr(args, "posonlyargs", []) return pos_only_args + args.args
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import string from datetime import datetime def make_temp_dirname(name=None): """Return a temp directory name.""" if name is not None: chars = string.ascii_lowercase + "_" name = name.lower().replace(" ", "_") name = "".join((c for c in name if c in chars)) now = datetime.now().st...
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def get_nice_str_list(items, *, item_glue=', ', quoter='`'): """ Get a nice English phrase listing the items. :param sequence items: individual items to put into a phrase. :param str quoter: default is backtick because it is expected that the most common items will be names (variables). :retur...
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def generate_traffic_directions(nodes): """ This function returns all possible traffic directions on the network topology. If the network is made up of only three nodes (e.g. A, B and C), the possible traffic directions are: AB, AC, BA, BC, CA, CB. If the number of nodes is N, the number of traffic...
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def checksum(message): """ Calculate the GDB server protocol checksum of the message. The GDB server protocol uses a simple modulo 256 sum. """ check = 0 for c in message: check += ord(c) return check % 256
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def repeat_str(s, num): """ Repeat string :param s: string :param num: repeat number :return: string """ output = '' for i in range(0, num): output += s if len(output) > 0: output += ' ' return output
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def skip(x,n): """ Reduces precision of the numeric value :type x: floating point value :param x: number to reduce precision :type n: int :param n: number of values after dot """ return int(x*(10**n))/10**n
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def xstr(this_string): """Return an empty string if the type is NoneType This avoids error when we're looking for a string throughout the script :param s: an object to be checked if it is NoneType """ if this_string is None: return '' return str(this_string)
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def remove_keys(doc, keys): """Return a new document with keys in keys removed >>> doc = {'a':1, 'b':2} >>> remove_keys(doc, ['a']) {'b': 2} >>> # Show that the original document is not affected >>> doc['a'] 1 """ return dict( (k, v) for k, v in doc.items() if k not in keys)
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import re def uncamel(val): """Return the snake case version of :attr:`str` >>> uncamel('deviceId') 'device_id' >>> uncamel('dataCenterName') 'data_center_name' """ s = lambda val: re.sub('(((?<=[a-z])[A-Z])|([A-Z](?![A-Z]|$)))', '_\\1', val).lower().strip('_') return s(val)
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def score(touching_power_pellet, touching_dot): """Verify that Pac-Man has scored when a power pellet or dot has been eaten. :param touching_power_pellet: bool - does the player have an active power pellet? :param touching_dot: bool - is the player touching a dot? :return: bool - has the player scored ...
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def dataset2metadataset_key(dataset_key): """Return the metadataset name corresponding to a dataset name Args: dataset_name (str): Name of a dataset Returns: str: Name of corresponding metadataset name """ return dataset_key.replace('/', '/_num_', 1)
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def areas(ip): """Returns the area per triangle of the triangulation inside a `LinearNDInterpolator` instance. Is useful when defining custom loss functions. Parameters ---------- ip : `scipy.interpolate.LinearNDInterpolator` instance Returns ------- numpy array The area p...
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import encodings def _c18n_encoding(encoding: str) -> str: """Canonicalize an encoding name This performs normalization and translates aliases using python's encoding aliases """ normed = encodings.normalize_encoding(encoding).lower() return encodings.aliases.aliases.get(normed, normed)
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def _get_id_given_url(original_url: str) -> str: """ Parse id from original URL """ return original_url.replace('https://', 'http://').replace('http://vocab.getty.edu/page/ia/', '')
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from typing import Any def length(x: Any) -> int: """A length function we can bind to in gin.""" return len(x)
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def parentheses_to_snake(x): """ Convert a string formatted as "{a} ({b})" to "{a}_{b}" Args: x: input string Returns: Formatted string """ x_split = x.split(" (") return f"{x_split[0]}_{x_split[1][:-1]}"
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from typing import Optional from typing import Tuple def expandCommand(command: str, currentBranch: str, prevBranch: Optional[str]) -> Tuple[str, bool]: """ Replaces %P with prevBranch, %B with currentBranch. If couldn't replace e.g. due to prevBranch being None, then does no replacement. ...
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from typing import Union from typing import Dict from typing import List def to_tags(values: Union[Dict, List, str], sep: str = ",") -> List[str]: """ Coerce the passed values into a list of colon separated key-value pairs. dict example: {"tag1": "value1", "tag2": "value2", ...} ...
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def slope(x_val, y_val): """ This function returns the slope of a line segment. Parameters ---------- x_val, y_vals : coordinates of the two points of the line segments(x_val = [x1, x2], y_val = [y1, y2]). Return ---------- slope of line segment. """ return ((y_val[1]-y_val[0])/(x_val[1]-x_val[...
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def dot(vect1, vect2): """ Calculate dot product of vect1 and vect2 """ return sum(v1_i * v2_i for v1_i, v2_i in zip(vect1, vect2))
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def a_au(ms, p): """ ms : stellar mass [Solar] p : period [days] returns : semi-major axis [AU] """ return (ms * (p / 365.25) ** 2) ** (1.0 / 3.0)
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def is_viv_ord_impname(impname): """ return if import name matches vivisect's ordinal naming scheme `'ord%d' % ord` """ if not impname.startswith("ord"): return False try: int(impname[len("ord") :]) except ValueError: return False else: return True
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def compare_user_with_lexicon(user_tokens, lexicon_tokens): """Function that compares input tokens with the resource tokens from 1000 most common words with the help of two for-loop: Input: 1. user_tokens (list): Liste der Benutzer-Tokens 2. lexicon_tokens (list): Liste der Lexicon-Tokens O...
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def paint(width, height, performance): """Calculates how many paint does one need for given area @param width: area's width @param height: area's height @param performance: paint performance/m^2""" area = width * height return area / performance
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def _eval_feature_fn(fn, xs, classes): """_eval_feature_fn(fn, xs, classes) -> dict of values Evaluate a feature function on every instance of the training set and class. fn is a callback function that takes two parameters: a training instance and a class. Return a dictionary of (training set ind...
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def disintegrate(obr): """Break image to RGB color representations, return list.""" r, g, b = obr.split() return [r, g, b]
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import sqlite3 def _sqlite_json_enabled() -> bool: """Return True if this Python installation supports SQLite3 JSON1.""" connection = sqlite3.connect(":memory:") cursor = connection.cursor() try: cursor.execute('SELECT JSON(\'{"a": "b"}\')') except sqlite3.OperationalError: return ...
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import pathlib import json def json_data(request, name: str): """Loads a json file.""" path = pathlib.Path(request.fspath, "fixtures", name) with path.open("r") as fp: return json.load(fp)
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def expect_z(zp_po): """Compute the expectation of z""" return zp_po
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import ast def black_repr(text): """Format some Chars as Source Chars, in the Black Style of Python""" if text is None: return None assert text == str(text), repr(text) # Glance over the oneline Repr from Python repped = repr(text) q1 = repped[0] q2 = repped[-1] middle_re...
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def select_bin(bin_list, values): """ Select a bin from a list of bins based on an array of values. Args: bin_list (arr): List of Bin objects values (arr): Array of parameters. Not that the parameters need to be in the same order that the bins were generated from. Returns: ...
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import re def create_div_id(key): """ One method to take course name and do the following: 1) make lower case 2) remove white space 3) remove non-alphanumeric charachters """ return re.sub(r'\W+', '', key.lower().replace(' ', ''))
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def calculated_stat(base_stat, level, iv, effort, nature=None): """Returns the calculated stat -- i.e. the value actually shown in the game on a Pokémon's status tab. """ # Remember: this is from C; use floor division! stat = (base_stat * 2 + iv + effort // 4) * level // 100 + 5 if nature: ...
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import math def forward_kinematics(length1, length2, theta1, theta2): """ :param length1: length of link 1 :param length2: length of link 2 :param theta1: absolute angle made by link 1 and positive x axis (assumed to be right) :param theta2: absolute angle made by link 2 and positive x axis (ass...
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def gen_header( program_name, start_address, program_length ): """ Generate a Header Record """ #specify the size of each column col2_size, col3_size, col4_size = 6,6,6 col1 = "H" col2 = program_name[:col2_size].ljust(col2_size).upper() col3 = hex(start_address)[2:].zfill(col3_size).upper() col4 = hex(progra...
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def make_pair(img_paths, label_paths): """Take a list of image paths and the list of corresponding label paths and return a list of tuples, each containing one image path and the corresponding label path. Arguments: img_paths (list of `Path`): list of paths to images. labels_paths (list of ...
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def is_authenticated(user): """ Check if a user is authenticated In Django 1.10 User.is_authenticated was changed to a property and backwards compatible support for is_authenticated being callable was finally removed in Django 2.0. This function can be removed once support Django versions earli...
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from typing import Callable from typing import Any import time def _pytimed(callback: Callable[..., None], *args: Any, **kwargs: Any): """Call the given callback and return time in nanoseconds as result.""" start_time = time.monotonic_ns() results = callback(*args, **kwargs) end_time = time.monotonic_ns() d...
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import time def compute(n=26): """ Computes 2 to the power of n and returns elapsed time""" start = time.time() res = 0 for i in range(2**n): res += 1 end = time.time() dt = end - start print(f'Result {res} in {dt} seconds!') return dt
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def get_minibatch_blob_names(is_training=True): """Return blob names in the order in which they are read by the data loader. """ # data blob: holds a batch of N images, each with 3 channels blob_names = ['data', 'labels'] return blob_names
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