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else | else { | private void reSIR(SIRContainer parent, FlatNode current, HashSet visited) { if (current.isFilter()) { SIRPipeline pipeline; if (!(parent instanceof SIRPipeline)) { pipeline = new SIRPipeline(parent, "Pipeline" + id++); pipeline.setInit(SIRStream.makeEmptyInit()); parent.add(pipeline); } else pipeline = (SIRPipeline)parent; //keep adding filters to this pipeline while (current.isFilter()) { //make sure we have not added this filter before assert !(visited.contains(current)) : "FlatGraph -> SIR does not support Feedbackloops"; //record that we have added this filter visited.add(current); List params; //if its parent does not contain it, just pass null params... if (parent.indexOf(current.getFilter()) == -1) params = new LinkedList(); else params = ((SIRFilter)current.contents).getParams(); pipeline.add((SIRFilter)current.contents, params); ((SIRFilter)current.contents).setParent(parent); //nothing more to do here so just return if (current.ways == 0) return; //assert that there is exactly one outgoing edge per filter if there is none assert current.ways == 1 && current.edges.length == 1; current = current.edges[0]; } } if (current.isSplitter()) { SIRSplitJoin splitJoin = new SIRSplitJoin(parent, "SplitJoin" + id++); splitJoin.setInit(SIRStream.makeEmptyInit()); //add this splitjoin to the parent! parent.add(splitJoin); //make sure we have not seen this splitter assert !(visited.contains(current)) : "FlatGraph -> SIR does not support Feedbackloops"; //record that we have added this splitter visited.add(current); splitJoin.setSplitter((SIRSplitter)current.contents); //create a dummy joiner for this split join just in case it does not have one SIRJoiner joiner = SIRJoiner.create(splitJoin, SIRJoinType.NULL, ((SIRSplitter)current.contents).getWays()); splitJoin.setJoiner(joiner); for (int i = 0; i < current.edges.length; i++) { if (current.edges[i] != null) { //wrap all parallel splitter edges in a pipeline SIRPipeline pipeline = new SIRPipeline(splitJoin, "Pipeline" + id++); pipeline.setInit(SIRStream.makeEmptyInit()); splitJoin.add(pipeline); reSIR(pipeline, current.edges[i], visited); } } return; } if (current.isJoiner()){ SIRContainer splitJoin = parent; while (!(splitJoin instanceof SIRSplitJoin)) { splitJoin = splitJoin.getParent(); } assert splitJoin != null; if (!visited.contains(current)) { //make sure we have not seen this Joiner assert !(visited.contains(current)) : "FlatGraph -> SIR does not support Feedbackloops"; //record that we have added this Joiner visited.add(current); //first time we are seeing this joiner so set it as the joiner //and visit the remainder of the graph ((SIRSplitJoin)splitJoin).setJoiner((SIRJoiner)current.contents); if (current.ways > 0) { assert current.edges.length == 1 && current.ways == 1 && current.edges[0] != null; reSIR(((SIRSplitJoin)splitJoin).getParent(), current.edges[0], visited); } } } } | 47772 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47772/71576bda692043a1f37c061fa2886249b20c4dd7/FlatGraphToSIR.java/clean/streams/src/at/dms/kjc/flatgraph/FlatGraphToSIR.java | [
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for (Iterator iterator = keySequenceAssignments.iterator(); iterator.hasNext();) { KeySequenceAssignment keySequenceAssignment = (KeySequenceAssignment) iterator.next(); KeySequenceBindingNode.Assignment assignment = keySequenceAssignment.assignment; String commandString = null; int difference = DIFFERENCE_NONE; | for (Iterator iterator = keySequenceAssignments.iterator(); iterator .hasNext();) { KeySequenceAssignment keySequenceAssignment = (KeySequenceAssignment) iterator .next(); KeySequenceBindingNode.Assignment assignment = keySequenceAssignment.assignment; String commandString = null; int difference = DIFFERENCE_NONE; | private void buildKeySequenceAssignmentsTable() { tableAssignmentsForKeySequence.removeAll(); for (Iterator iterator = keySequenceAssignments.iterator(); iterator.hasNext();) { KeySequenceAssignment keySequenceAssignment = (KeySequenceAssignment) iterator.next(); KeySequenceBindingNode.Assignment assignment = keySequenceAssignment.assignment; String commandString = null; int difference = DIFFERENCE_NONE; if (assignment.hasPreferenceCommandIdInFirstKeyConfiguration || assignment.hasPreferenceCommandIdInInheritedKeyConfiguration) { String preferenceCommandId; if (assignment.hasPreferenceCommandIdInFirstKeyConfiguration) preferenceCommandId = assignment.preferenceCommandIdInFirstKeyConfiguration; else preferenceCommandId = assignment.preferenceCommandIdInInheritedKeyConfiguration; if (assignment.hasPluginCommandIdInFirstKeyConfiguration || assignment.hasPluginCommandIdInInheritedKeyConfiguration) { String pluginCommandId; if (assignment.hasPluginCommandIdInFirstKeyConfiguration) pluginCommandId = assignment.pluginCommandIdInFirstKeyConfiguration; else pluginCommandId = assignment.pluginCommandIdInInheritedKeyConfiguration; if (preferenceCommandId != null) { difference = DIFFERENCE_CHANGE; commandString = commandUniqueNamesById.get(preferenceCommandId) + ""; //$NON-NLS-1$ } else { difference = DIFFERENCE_MINUS; commandString = "Unassigned"; //$NON-NLS-1$ } if (pluginCommandId != null) commandString += " (was: " + commandUniqueNamesById.get(pluginCommandId) + ")"; //$NON-NLS-1$ //$NON-NLS-2$ else commandString += " (was: " + "Unassigned" + ")"; //$NON-NLS-1$//$NON-NLS-2$ //$NON-NLS-3$ } else { if (preferenceCommandId != null) { difference = DIFFERENCE_ADD; commandString = commandUniqueNamesById.get(preferenceCommandId) + ""; //$NON-NLS-1$ } else { difference = DIFFERENCE_MINUS; commandString = "Unassigned"; //$NON-NLS-1$ } } } else { String pluginCommandId; if (assignment.hasPluginCommandIdInFirstKeyConfiguration) pluginCommandId = assignment.pluginCommandIdInFirstKeyConfiguration; else pluginCommandId = assignment.pluginCommandIdInInheritedKeyConfiguration; if (pluginCommandId != null) { difference = DIFFERENCE_NONE; commandString = commandUniqueNamesById.get(pluginCommandId) + ""; //$NON-NLS-1$ } else { difference = DIFFERENCE_MINUS; commandString = "Unassigned"; //$NON-NLS-1$ } } TableItem tableItem = new TableItem(tableAssignmentsForKeySequence, SWT.NULL); switch (difference) { case DIFFERENCE_ADD : tableItem.setImage(0, IMAGE_PLUS); break; case DIFFERENCE_CHANGE : tableItem.setImage(0, IMAGE_CHANGE); break; case DIFFERENCE_MINUS : tableItem.setImage(0, IMAGE_MINUS); break; case DIFFERENCE_NONE : tableItem.setImage(0, IMAGE_BLANK); break; } String contextId = keySequenceAssignment.contextId; if (contextId == null) tableItem.setText(1, Util.translateString(RESOURCE_BUNDLE, "general")); //$NON-NLS-1$ else tableItem.setText(1, (String) contextUniqueNamesById.get(contextId)); //$NON-NLS-1$ tableItem.setText(2, commandString); if (difference == DIFFERENCE_MINUS) tableItem.setForeground(new Color(getShell().getDisplay(), RGB_MINUS)); } } | 57470 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57470/664efbbd6fd6dba5c4d118b10afe31ab34b6890a/KeysPreferencePage.java/clean/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/internal/commands/KeysPreferencePage.java | [
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int s = o == runtime.getNil() ? 0 : (int) (RubyNumeric.num2long(o) & 0xffff); encodeShortLittleEndian(result, s); }}); | int s = o == runtime.getNil() ? 0 : (int) (RubyNumeric.num2long(o) & 0xffff); encodeShortLittleEndian(result, s); }}); | public void encode(IRuby runtime, IRubyObject o, StringBuffer result){ int s = o == runtime.getNil() ? 0 : (int) (RubyNumeric.num2long(o) & 0xffff); encodeShortLittleEndian(result, s); }}); | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/415b1e0db282c02d672a7e34a34a2bea0f69ccb2/Pack.java/clean/src/org/jruby/util/Pack.java | [
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if ( propDefn.getTypeCode( ) != PropertyType.LIST_TYPE ) | if ( propDefn.getTypeCode( ) != IPropertyType.LIST_TYPE ) | protected void doSetProperty( PropertyDefn propDefn, Object valueToSet ) { assert valueToSet != null; if ( propDefn.getTypeCode( ) != PropertyType.LIST_TYPE ) { DesignParserException e = new DesignParserException( DesignParserException.DESIGN_EXCEPTION_WRONG_SIMPLE_LIST_TYPE ); handler.getErrorHandler( ).semanticError( e ); valid = false; return; } // Validate the value. assert valueToSet instanceof List; List valueList = new ArrayList( ); try { for ( int i = 0; i < ( (List) valueToSet ).size( ); i++ ) { String item = (String) ( (List) valueToSet ).get( i ); PropertyType type = propDefn.getSubType( ); Object propValue = type.validateXml( handler.getModule( ), propDefn, item ); if ( propValue != null ) valueList.add( i, propValue ); } } catch ( PropertyValueException ex ) { ex.setElement( element ); ex.setPropertyName( propDefn.getName( ) ); handlePropertyValueException( ex ); valid = false; return; } if ( !valueList.isEmpty( ) && !StyledElement.STYLE_PROP.equals( propDefn.getName( ) ) ) element.setProperty( propDefn, valueList ); } | 12803 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12803/d802c33711e0d111551ae23575895cd060f085b6/SimplePropertyListState.java/buggy/model/org.eclipse.birt.report.model/src/org/eclipse/birt/report/model/parser/SimplePropertyListState.java | [
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noRadio = new JRadioButton(parent.langpack.getString("LicencePanel.notagree"), true); | noRadio = new JRadioButton( parent.langpack.getString("LicencePanel.notagree"), true); | public LicencePanel(InstallerFrame parent, InstallData idata) { super(parent, idata); // We initialize our layout setLayout(new BoxLayout(this, BoxLayout.Y_AXIS)); // We load the licence loadLicence(); // We put our components JLabel infoLabel = new JLabel(parent.langpack.getString("LicencePanel.info"), parent.icons.getImageIcon("history"), JLabel.TRAILING); add(infoLabel); add(Box.createRigidArea(new Dimension(0, 3))); textArea = new JTextArea(licence); textArea.setMargin(new Insets(2,2,2,2)); textArea.setCaretPosition(0); textArea.setEditable(false); textArea.setLineWrap(true); textArea.setWrapStyleWord(true); scroller = new JScrollPane(textArea); scroller.setAlignmentX(LEFT_ALIGNMENT); add(scroller); ButtonGroup group = new ButtonGroup(); yesRadio = new JRadioButton(parent.langpack.getString("LicencePanel.agree"), false); group.add(yesRadio); add(yesRadio); yesRadio.addActionListener(this); noRadio = new JRadioButton(parent.langpack.getString("LicencePanel.notagree"), true); group.add(noRadio); add(noRadio); noRadio.addActionListener(this); } | 28044 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/28044/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/LicencePanel.java/clean/src/lib/com/izforge/izpack/panels/LicencePanel.java | [
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public void setValue(String[] stringValue) { _elementValues.put(value, stringValue); } | public void setValue(final String stringValue) { _elementValues.put(VALUE, stringValue); } | public void setValue(String[] stringValue) { _elementValues.put(value, stringValue); } //-- setValue | 57307 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57307/639ed93115321ad51c2450f306c4d50d146ede46/JAnnotation.java/buggy/src/main/java/org/exolab/javasource/JAnnotation.java | [
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public void doTestTrap(String version, boolean newSuspectOnTrap) throws UnknownHostException, InterruptedException { setUpTrapHandler(newSuspectOnTrap); | public void doTestTrap(String version, boolean newSuspectOnTrap) { if (newSuspectOnTrap) { tearDown(); setUpTrapHandler(true); anticipateEvent("uei.opennms.org/internal/discovery/newSuspect"); } | public void doTestTrap(String version, boolean newSuspectOnTrap) throws UnknownHostException, InterruptedException { setUpTrapHandler(newSuspectOnTrap); Event snmpEvent = new Event(); snmpEvent.setInterface("127.0.0.1"); snmpEvent.setNodeid(0); snmpEvent.setUei("uei.opennms.org/default/trap"); System.out.println("Anticipating: " + new EventWrapper(snmpEvent)); m_anticipator.anticipateEvent(snmpEvent); if (version.equals("v1")) { SnmpPduTrap pdu = new SnmpPduTrap(); pdu.setGeneric(6); pdu.setSpecific(1); pdu.setAgentAddress(new SnmpIPAddress(InetAddress.getByName("127.0.0.1"))); m_trapHandler.snmpReceivedTrap(null, InetAddress.getByName("127.0.0.1"), 10000, new SnmpOctetString("public".getBytes()), pdu); } else if (version.equals("v2c")) { SnmpPduRequest pdu = new SnmpPduRequest(SnmpPduPacket.V2TRAP);// pdu.setGeneric(6);// pdu.setSpecific(1); m_trapHandler.snmpReceivedTrap(null, InetAddress.getByName("127.0.0.1"), 10000, new SnmpOctetString("public".getBytes()), pdu); } else { throw new UndeclaredThrowableException(null, "unsupported SNMP version for test: " + version); } finishUp(); } | 48885 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/48885/3dd7eec7d966bc726092ffc7f3b8c3e87d53ff48/TrapHandlerTest.java/clean/src/services/org/opennms/netmgt/trapd/TrapHandlerTest.java | [
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config.setURIResolver(new TransformerURIResolver(SaxonXQueryProcessor.this, pipelineContext, INPUT_DATA, true)); | config.setURIResolver(new TransformerURIResolver(SaxonXQueryProcessor.this, pipelineContext, INPUT_DATA, URLGenerator.DEFAULT_HANDLE_XINCLUDE)); | public void readImpl(final PipelineContext pipelineContext, ContentHandler contentHandler) { try { final Document dataDocument = readInputAsDOM4J(pipelineContext, INPUT_DATA); // Create XQuery configuration (depends on attributes input) final Configuration config = new Configuration(); { config.setErrorListener(new StringErrorListener(logger)); config.setURIResolver(new TransformerURIResolver(SaxonXQueryProcessor.this, pipelineContext, INPUT_DATA, true)); // Read attributes Map attributes = null; { // Read attributes input only if connected if (getConnectedInputs().get(INPUT_ATTRIBUTES) != null) { // Read input as an attribute Map and cache it attributes = (Map) readCacheInputAsObject(pipelineContext, getInputByName(INPUT_ATTRIBUTES), new CacheableInputReader() { public Object read(PipelineContext context, ProcessorInput input) { Document preferencesDocument = readInputAsDOM4J(context, input); OXFPropertiesSerializer.PropertyStore propertyStore = OXFPropertiesSerializer.createPropertyStore(preferencesDocument); OXFProperties.PropertySet propertySet = propertyStore.getGlobalPropertySet(); return propertySet.getObjectMap(); } }); } } if (attributes != null) setConfigurationAttributes(config, attributes); } // Create static context final LocalStaticQueryContext staticContext = new LocalStaticQueryContext(config); // Create XQuery expression (depends on config input and static context) // TODO: caching of query must also depend on attributes input XQueryExpression xqueryExpression = (XQueryExpression) readCacheInputAsObject(pipelineContext, getInputByName(INPUT_CONFIG), new CacheableInputReader() { public Object read(PipelineContext context, ProcessorInput input) { // Read XQuery into String final Document xqueryDocument = readCacheInputAsDOM4J(pipelineContext, INPUT_CONFIG); String xqueryBody; if (XMLConstants.XS_STRING_QNAME.equals(Dom4jUtils.extractAttributeValueQName(xqueryDocument.getRootElement(), XMLConstants.XSI_TYPE_QNAME))) { // Content is text under an XML root element xqueryBody = xqueryDocument.getRootElement().getStringValue(); } else { // Content is XQuery embedded into XML xqueryBody = Dom4jUtils.domToString(xqueryDocument); xqueryBody = xqueryBody.substring(xqueryBody.indexOf(">") + 1); xqueryBody = xqueryBody.substring(0, xqueryBody.lastIndexOf("<")); } // Add namespaces declarations final Map namespaces = new HashMap(); getDeclaredNamespaces(namespaces, xqueryDocument.getRootElement()); for (Iterator i = namespaces.keySet().iterator(); i.hasNext();) { String prefix = (String) i.next(); String uri = (String) namespaces.get(prefix); staticContext.declareActiveNamespace(prefix, uri); } try { return staticContext.compileQuery(xqueryBody); } catch (Exception e) { throw new OXFException(e); } } }); // Create dynamic context and run query DynamicQueryContext dynamicContext = new DynamicQueryContext(config); dynamicContext.setContextNode(staticContext.buildDocument(new DocumentSource(dataDocument))); // TODO: use xqueryExpression.getStaticContext() when Saxon is upgraded xqueryExpression.run(dynamicContext, new SAXResult(contentHandler), new Properties()); } catch (Exception e) { throw new OXFException(e); } } | 54445 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54445/3fbd0bd00d823a0c55f659e5ff419597d5e2e29c/SaxonXQueryProcessor.java/buggy/src/java/org/orbeon/oxf/processor/transformer/SaxonXQueryProcessor.java | [
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DataTools.writeReverseInt(out, height*(width+pad)); | DataTools.writeReverseInt(out, channels*height*(width+pad)); | public void save(String id, Image image, boolean last) throws FormatException, IOException { if (image == null) { throw new FormatException("Image is null"); } BufferedImage img = ImageTools.makeBuffered(image); // get the width and height of the image int width = img.getWidth(); int height = img.getHeight(); // retrieve pixel data for this plane byte[] buf = ImageTools.getPixels(img, width, height); // reorder the scanlines // also need to check if the width is a multiple of 8 // if it is, great; if not, we need to pad each scanline with enough // bytes to make the width a multiple of 8 int pad = width % 4; pad = (4 - pad) % 4; byte[] temp = buf; buf = new byte[temp.length + height*pad]; int newScanline = height - 1; for (int oldScanline=0; oldScanline<height; oldScanline++) { System.arraycopy(temp, oldScanline*width, buf, newScanline*(width+pad), width); // add padding bytes for (int i=0; i<pad; i++) { buf[newScanline*(width+pad) + width + i] = 0; } newScanline--; } // invert each pixel // this will makes the colors look right in other readers (e.g. xine), // but needs to be reversed in QTReader for (int i=0; i<buf.length; i++) { buf[i] = (byte) (255 - buf[i]); } if (!id.equals(currentId)) { // -- write the header -- offsets = new Vector(); currentId = id; out = new RandomAccessFile(id, "rw"); created = (int) System.currentTimeMillis(); numWritten++; // -- write the first header -- DataTools.writeReverseInt(out, 8); DataTools.writeString(out, "wide"); // -- write the first plane of pixel data (mdat) -- numBytes = buf.length; byteCountOffset = out.getFilePointer(); DataTools.writeReverseInt(out, numBytes + 8); DataTools.writeString(out, "mdat"); out.write(buf); offsets.add(new Integer(16)); } else { // update the number of pixel bytes written int planeOffset = numBytes; numBytes += buf.length; out.seek(byteCountOffset); DataTools.writeReverseInt(out, numBytes + 8); // write this plane's pixel data out.seek(out.length()); out.write(buf); offsets.add(new Integer(planeOffset + 16)); numWritten++; } if (last) { int duration = numWritten * 50; int timeScale = 100; // -- write moov atom -- int atomLength = 685 + 8*numWritten; DataTools.writeReverseInt(out, atomLength); DataTools.writeString(out, "moov"); // -- write mvhd atom -- DataTools.writeReverseInt(out, 108); DataTools.writeString(out, "mvhd"); DataTools.writeReverseShort(out, 0); // version DataTools.writeReverseShort(out, 0); // flags DataTools.writeReverseInt(out, created); // creation time DataTools.writeReverseInt(out, (int) System.currentTimeMillis()); DataTools.writeReverseInt(out, timeScale); // time scale DataTools.writeReverseInt(out, duration); // duration out.write(new byte[] {0, 1, 0, 0}); // preferred rate & volume out.write(new byte[] {0, -1, 0, 0, 0, 0, 0, 0, 0, 0}); // reserved // 3x3 matrix - unsure of significance DataTools.writeReverseInt(out, 1); DataTools.writeReverseInt(out, 0); DataTools.writeReverseInt(out, 0); DataTools.writeReverseInt(out, 0); DataTools.writeReverseInt(out, 1); DataTools.writeReverseInt(out, 0); DataTools.writeReverseInt(out, 0); DataTools.writeReverseInt(out, 0); DataTools.writeReverseInt(out, 16384); DataTools.writeReverseShort(out, 0); // not sure what this is DataTools.writeReverseInt(out, 0); // preview duration DataTools.writeReverseInt(out, 0); // preview time DataTools.writeReverseInt(out, 0); // poster time DataTools.writeReverseInt(out, 0); // selection time DataTools.writeReverseInt(out, 0); // selection duration DataTools.writeReverseInt(out, 0); // current time DataTools.writeReverseInt(out, 2); // next track's id // -- write trak atom -- atomLength -= 116; DataTools.writeReverseInt(out, atomLength); DataTools.writeString(out, "trak"); // -- write tkhd atom -- DataTools.writeReverseInt(out, 92); DataTools.writeString(out, "tkhd"); DataTools.writeReverseShort(out, 0); // version DataTools.writeReverseShort(out, 15); // flags DataTools.writeReverseInt(out, created); // creation time DataTools.writeReverseInt(out, (int) System.currentTimeMillis()); DataTools.writeReverseInt(out, 1); // track id DataTools.writeReverseInt(out, 0); // reserved DataTools.writeReverseInt(out, duration); // duration DataTools.writeReverseInt(out, 0); // reserved DataTools.writeReverseInt(out, 0); // reserved DataTools.writeReverseShort(out, 0); // reserved DataTools.writeReverseInt(out, 0); // unknown // 3x3 matrix - unsure of significance DataTools.writeReverseInt(out, 1); DataTools.writeReverseInt(out, 0); DataTools.writeReverseInt(out, 0); DataTools.writeReverseInt(out, 0); DataTools.writeReverseInt(out, 1); DataTools.writeReverseInt(out, 0); DataTools.writeReverseInt(out, 0); DataTools.writeReverseInt(out, 0); DataTools.writeReverseInt(out, 16384); DataTools.writeReverseInt(out, width); // image width DataTools.writeReverseInt(out, height); // image height DataTools.writeReverseShort(out, 0); // reserved // -- write edts atom -- DataTools.writeReverseInt(out, 36); DataTools.writeString(out, "edts"); // -- write elst atom -- DataTools.writeReverseInt(out, 28); DataTools.writeString(out, "elst"); DataTools.writeReverseShort(out, 0); // version DataTools.writeReverseShort(out, 0); // flags DataTools.writeReverseInt(out, 1); // number of entries in the table DataTools.writeReverseInt(out, duration); // duration DataTools.writeReverseShort(out, 0); // time DataTools.writeReverseInt(out, 1); // rate DataTools.writeReverseShort(out, 0); // unknown // -- write mdia atom -- atomLength -= 136; DataTools.writeReverseInt(out, atomLength); DataTools.writeString(out, "mdia"); // -- write mdhd atom -- DataTools.writeReverseInt(out, 32); DataTools.writeString(out, "mdhd"); DataTools.writeReverseShort(out, 0); // version DataTools.writeReverseShort(out, 0); // flags DataTools.writeReverseInt(out, created); // creation time DataTools.writeReverseInt(out, (int) System.currentTimeMillis()); DataTools.writeReverseInt(out, timeScale); // time scale DataTools.writeReverseInt(out, duration); // duration DataTools.writeReverseShort(out, 0); // language DataTools.writeReverseShort(out, 0); // quality // -- write hdlr atom -- DataTools.writeReverseInt(out, 58); DataTools.writeString(out, "hdlr"); DataTools.writeReverseShort(out, 0); // version DataTools.writeReverseShort(out, 0); // flags DataTools.writeString(out, "mhlr"); DataTools.writeString(out, "vide"); DataTools.writeString(out, "appl"); out.write(new byte[] {16, 0, 0, 0, 0, 1, 1, 11, 25}); DataTools.writeString(out, "Apple Video Media Handler"); // -- write minf atom -- atomLength -= 98; DataTools.writeReverseInt(out, atomLength); DataTools.writeString(out, "minf"); // -- write vmhd atom -- DataTools.writeReverseInt(out, 20); DataTools.writeString(out, "vmhd"); DataTools.writeReverseShort(out, 0); // version DataTools.writeReverseShort(out, 1); // flags DataTools.writeReverseShort(out, 64); // graphics mode DataTools.writeReverseShort(out, 32768); // opcolor 1 DataTools.writeReverseShort(out, 32768); // opcolor 2 DataTools.writeReverseShort(out, 32768); // opcolor 3 // -- write hdlr atom -- DataTools.writeReverseInt(out, 57); DataTools.writeString(out, "hdlr"); DataTools.writeReverseShort(out, 0); // version DataTools.writeReverseShort(out, 0); // flags DataTools.writeString(out, "dhlr"); DataTools.writeString(out, "alis"); DataTools.writeString(out, "appl"); out.write(new byte[] {16, 0, 0, 1, 0, 1, 1, 31, 24}); DataTools.writeString(out, "Apple Alias Data Handler"); // -- write dinf atom -- DataTools.writeReverseInt(out, 36); DataTools.writeString(out, "dinf"); // -- write dref atom -- DataTools.writeReverseInt(out, 28); DataTools.writeString(out, "dref"); DataTools.writeReverseShort(out, 0); // version DataTools.writeReverseShort(out, 0); // flags DataTools.writeReverseShort(out, 0); // version 2 DataTools.writeReverseShort(out, 1); // flags 2 out.write(new byte[] {0, 0, 0, 12}); DataTools.writeString(out, "alis"); DataTools.writeReverseShort(out, 0); // version 3 DataTools.writeReverseShort(out, 1); // flags 3 // -- write stbl atom -- atomLength -= 121; DataTools.writeReverseInt(out, atomLength); DataTools.writeString(out, "stbl"); // -- write stsd atom -- DataTools.writeReverseInt(out, 118); DataTools.writeString(out, "stsd"); DataTools.writeReverseShort(out, 0); // version DataTools.writeReverseShort(out, 0); // flags DataTools.writeReverseInt(out, 1); // number of entries in the table out.write(new byte[] {0, 0, 0, 102}); DataTools.writeString(out, "raw "); // codec out.write(new byte[] {0, 0, 0, 0, 0, 0}); // reserved DataTools.writeReverseShort(out, 1); // data reference DataTools.writeReverseShort(out, 1); // version DataTools.writeReverseShort(out, 1); // revision DataTools.writeString(out, "appl"); DataTools.writeReverseInt(out, 0); // temporal quality DataTools.writeReverseInt(out, 768); // spatial quality DataTools.writeReverseShort(out, width); // image width DataTools.writeReverseShort(out, height); // image height out.write(new byte[] {0, 72, 0, 0}); // horizontal dpi out.write(new byte[] {0, 72, 0, 0}); // vertical dpi DataTools.writeReverseInt(out, 0); // data size DataTools.writeReverseShort(out, 1); // frames per sample DataTools.writeReverseShort(out, 12); // length of compressor name DataTools.writeString(out, "Uncompressed"); // compressor name DataTools.writeReverseInt(out, 40); // unknown DataTools.writeReverseInt(out, 40); // unknown DataTools.writeReverseInt(out, 40); // unknown DataTools.writeReverseInt(out, 40); // unknown DataTools.writeReverseInt(out, 40); // unknown DataTools.writeReverseShort(out, 40); // bits per pixel DataTools.writeReverseInt(out, 65535); // ctab ID out.write(new byte[] {12, 103, 97, 108}); // gamma out.write(new byte[] {97, 1, -52, -52, 0, 0, 0, 0}); // unknown // -- write stts atom -- DataTools.writeReverseInt(out, 24); DataTools.writeString(out, "stts"); DataTools.writeReverseShort(out, 0); // version DataTools.writeReverseShort(out, 0); // flags DataTools.writeReverseInt(out, 1); // number of entries in the table DataTools.writeReverseInt(out, numWritten); // number of planes DataTools.writeReverseInt(out, 50); // duration // -- write stsc atom -- DataTools.writeReverseInt(out, 28); DataTools.writeString(out, "stsc"); DataTools.writeReverseShort(out, 0); // version DataTools.writeReverseShort(out, 0); // flags DataTools.writeReverseInt(out, 1); // number of entries in the table DataTools.writeReverseInt(out, 1); // chunk DataTools.writeReverseInt(out, 1); // samples DataTools.writeReverseInt(out, 1); // id // -- write stsz atom -- DataTools.writeReverseInt(out, 20 + 4*numWritten); DataTools.writeString(out, "stsz"); DataTools.writeReverseShort(out, 0); // version DataTools.writeReverseShort(out, 0); // flags DataTools.writeReverseInt(out, 0); // sample size DataTools.writeReverseInt(out, numWritten); // number of planes for (int i=0; i<numWritten; i++) { DataTools.writeReverseInt(out, height*(width+pad)); // sample size } // -- write stco atom -- DataTools.writeReverseInt(out, 16 + 4*numWritten); DataTools.writeString(out, "stco"); DataTools.writeReverseShort(out, 0); // version DataTools.writeReverseShort(out, 0); // flags DataTools.writeReverseInt(out, numWritten); 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.put( Style.COLOR_PROP, DesignSchemaConstants.COLOR_ATTRIB ); cssDictionary.put( Style.DISPLAY_PROP, | .put( IStyleModel.COLOR_PROP, DesignSchemaConstants.COLOR_ATTRIB ); cssDictionary.put( IStyleModel.DISPLAY_PROP, | private static void populateCSSDictionary( ) { cssDictionary.put( Style.BACKGROUND_ATTACHMENT_PROP, DesignSchemaConstants.BACKGROUND_ATTACHMENT_ATTRIB ); cssDictionary.put( Style.BACKGROUND_COLOR_PROP, DesignSchemaConstants.BACKGROUND_COLOR_ATTRIB ); cssDictionary.put( Style.BACKGROUND_IMAGE_PROP, DesignSchemaConstants.BACKGROUND_IMAGE_ATTRIB ); cssDictionary.put( Style.BACKGROUND_POSITION_X_PROP, DesignSchemaConstants.BACKGROUND_POSITION_X_ATTRIB ); cssDictionary.put( Style.BACKGROUND_POSITION_Y_PROP, DesignSchemaConstants.BACKGROUND_POSITION_Y_ATTRIB ); cssDictionary.put( Style.BACKGROUND_REPEAT_PROP, DesignSchemaConstants.BACKGROUND_REPEAT_ATTRIB ); cssDictionary.put( Style.BORDER_BOTTOM_COLOR_PROP, DesignSchemaConstants.BORDER_BOTTOM_COLOR_ATTRIB ); cssDictionary.put( Style.BORDER_BOTTOM_STYLE_PROP, DesignSchemaConstants.BORDER_BOTTOM_STYLE_ATTRIB ); cssDictionary.put( Style.BORDER_BOTTOM_WIDTH_PROP, DesignSchemaConstants.BORDER_BOTTOM_WIDTH_ATTRIB ); cssDictionary.put( Style.BORDER_LEFT_COLOR_PROP, DesignSchemaConstants.BORDER_LEFT_COLOR_ATTRIB ); cssDictionary.put( Style.BORDER_LEFT_STYLE_PROP, DesignSchemaConstants.BORDER_LEFT_STYLE_ATTRIB ); cssDictionary.put( Style.BORDER_LEFT_WIDTH_PROP, DesignSchemaConstants.BORDER_BOTTOM_WIDTH_ATTRIB ); cssDictionary.put( Style.BORDER_RIGHT_COLOR_PROP, DesignSchemaConstants.BORDER_RIGHT_COLOR_ATTRIB ); cssDictionary.put( Style.BORDER_RIGHT_STYLE_PROP, DesignSchemaConstants.BORDER_BOTTOM_STYLE_ATTRIB ); cssDictionary.put( Style.BORDER_RIGHT_WIDTH_PROP, DesignSchemaConstants.BORDER_BOTTOM_WIDTH_ATTRIB ); cssDictionary.put( Style.BORDER_TOP_COLOR_PROP, DesignSchemaConstants.BORDER_TOP_COLOR_ATTRIB ); cssDictionary.put( Style.BORDER_TOP_STYLE_PROP, DesignSchemaConstants.BORDER_TOP_STYLE_ATTRIB ); cssDictionary.put( Style.BORDER_TOP_WIDTH_PROP, DesignSchemaConstants.BORDER_TOP_WIDTH_ATTRIB ); cssDictionary.put( Style.CAN_SHRINK_PROP, DesignSchemaConstants.CAN_SHRINK_ATTRIB ); cssDictionary .put( Style.COLOR_PROP, DesignSchemaConstants.COLOR_ATTRIB ); cssDictionary.put( Style.DISPLAY_PROP, DesignSchemaConstants.SECTION_DISPLAY_ATTRIB ); cssDictionary.put( Style.FONT_FAMILY_PROP, DesignSchemaConstants.FONT_FAMILY_ATTRIB ); cssDictionary.put( Style.FONT_SIZE_PROP, DesignSchemaConstants.FONT_SIZE_ATTRIB ); cssDictionary.put( Style.FONT_STYLE_PROP, DesignSchemaConstants.FONT_STYLE_ATTRIB ); cssDictionary.put( Style.FONT_VARIANT_PROP, DesignSchemaConstants.FONT_VARIANT_ATTRIB ); cssDictionary.put( Style.FONT_WEIGHT_PROP, DesignSchemaConstants.FONT_WEIGHT_ATTRIB ); cssDictionary.put( Style.LETTER_SPACING_PROP, DesignSchemaConstants.TEXT_LETTER_SPACING_ATTRIB ); cssDictionary.put( Style.LINE_HEIGHT_PROP, DesignSchemaConstants.TEXT_LINE_HEIGHT_ATTRIB ); cssDictionary.put( Style.MARGIN_BOTTOM_PROP, DesignSchemaConstants.MARGIN_BOTTOM_ATTRIB ); cssDictionary.put( Style.MARGIN_LEFT_PROP, DesignSchemaConstants.MARGIN_LEFT_ATTRIB ); cssDictionary.put( Style.MARGIN_RIGHT_PROP, DesignSchemaConstants.MARGIN_RIGHT_ATTRIB ); cssDictionary.put( Style.MARGIN_TOP_PROP, DesignSchemaConstants.MARGIN_TOP_ATTRIB ); cssDictionary.put( Style.ORPHANS_PROP, DesignSchemaConstants.TEXT_ORPHANS_ATTRIB ); cssDictionary.put( Style.PADDING_BOTTOM_PROP, DesignSchemaConstants.PADDING_BOTTOM_ATTRIB ); cssDictionary.put( Style.PADDING_LEFT_PROP, DesignSchemaConstants.PADDING_LEFT_ATTRIB ); cssDictionary.put( Style.PADDING_RIGHT_PROP, DesignSchemaConstants.PADDING_RIGHT_ATTRIB ); cssDictionary.put( Style.PADDING_TOP_PROP, DesignSchemaConstants.PADDING_TOP_ATTRIB ); cssDictionary.put( Style.PAGE_BREAK_AFTER_PROP, DesignSchemaConstants.SECTION_PAGE_BREAK_AFTER_ATTRIB ); cssDictionary.put( Style.PAGE_BREAK_BEFORE_PROP, DesignSchemaConstants.SECTION_PAGE_BREAK_BEFORE_ATTRIB ); cssDictionary.put( Style.PAGE_BREAK_INSIDE_PROP, DesignSchemaConstants.SECTION_PAGE_BREAK_INSIDE_ATTRIB ); cssDictionary.put( Style.SHOW_IF_BLANK_PROP, DesignSchemaConstants.SECTION_SHOW_LF_BLANK_ATTRIB ); cssDictionary.put( Style.TEXT_ALIGN_PROP, DesignSchemaConstants.TEXT_ALIGN_ATTRIB ); cssDictionary.put( Style.TEXT_INDENT_PROP, DesignSchemaConstants.TEXT_INDENT_ATTRIB ); cssDictionary.put( Style.TEXT_LINE_THROUGH_PROP, DesignSchemaConstants.TEXT_LINE_THROUGH_ATTRIB ); cssDictionary.put( Style.TEXT_OVERLINE_PROP, DesignSchemaConstants.TEXT_OVERLINE_ATTRIB ); cssDictionary.put( Style.TEXT_TRANSFORM_PROP, DesignSchemaConstants.TEXT_TRANSFORM_ATTRIB ); cssDictionary.put( Style.TEXT_UNDERLINE_PROP, DesignSchemaConstants.TEXT_UNDERLINE_ATTRIB ); cssDictionary.put( Style.VERTICAL_ALIGN_PROP, DesignSchemaConstants.TEXT_VERTICAL_ALIGN_ATTRIB ); cssDictionary.put( Style.WHITE_SPACE_PROP, DesignSchemaConstants.TEXT_WHITE_SPACE_ATTRIB ); cssDictionary.put( Style.WIDOWS_PROP, DesignSchemaConstants.TEXT_WIDOWS_ATTRIB ); cssDictionary.put( Style.WORD_SPACING_PROP, DesignSchemaConstants.TEXT_WORD_SPACING_ATTRIB ); } | 12803 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12803/d802c33711e0d111551ae23575895cd060f085b6/Style.java/buggy/model/org.eclipse.birt.report.model/src/org/eclipse/birt/report/model/elements/Style.java | [
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public static void validateUTF8(byte[] utf8) throws MalformedInputException { int count = 0; int leadByte = 0; int length = 0; int state = LEAD_BYTE; while (count < utf8.length) { int aByte = ((int) utf8[count] & 0xFF); switch (state) { case LEAD_BYTE: leadByte = aByte; length = bytesFromUTF8[aByte]; switch (length) { case 0: if (leadByte > 0x7E) throw new MalformedInputException(count); state = TRAIL_BYTE; break; case 1: if (leadByte < 0xC2 || leadByte > 0xDF) throw new MalformedInputException(count); state = TRAIL_BYTE_1; break; case 2: if (leadByte < 0xE0 || leadByte > 0xEF) throw new MalformedInputException(count); state = TRAIL_BYTE_1; break; case 3: if (leadByte < 0xF0 || leadByte > 0xF4) throw new MalformedInputException(count); state = TRAIL_BYTE_1; break; default: throw new MalformedInputException(count); } break; case TRAIL_BYTE_1: if (leadByte == 0xF0 && aByte < 0x90) throw new MalformedInputException(count); if (leadByte == 0xF4 && aByte > 0x8F) throw new MalformedInputException(count); if (leadByte == 0xE0 && aByte < 0xA0) throw new MalformedInputException(count); if (leadByte == 0xED && aByte > 0x9F) throw new MalformedInputException(count); case TRAIL_BYTE: if (aByte < 0x80 || aByte > 0xBF) throw new MalformedInputException(count); if (--length == 0) { state = LEAD_BYTE; } else { state = TRAIL_BYTE; } break; } count++; } | public static void validateUTF8(byte[] utf8) throws MalformedInputException { validateUTF(utf8, 0, utf8.length); | public static void validateUTF8(byte[] utf8) throws MalformedInputException { int count = 0; int leadByte = 0; int length = 0; int state = LEAD_BYTE; while (count < utf8.length) { int aByte = ((int) utf8[count] & 0xFF); switch (state) { case LEAD_BYTE: leadByte = aByte; length = bytesFromUTF8[aByte]; switch (length) { case 0: // check for ASCII if (leadByte > 0x7E) throw new MalformedInputException(count); state = TRAIL_BYTE; break; case 1: if (leadByte < 0xC2 || leadByte > 0xDF) throw new MalformedInputException(count); state = TRAIL_BYTE_1; break; case 2: if (leadByte < 0xE0 || leadByte > 0xEF) throw new MalformedInputException(count); state = TRAIL_BYTE_1; break; case 3: if (leadByte < 0xF0 || leadByte > 0xF4) throw new MalformedInputException(count); state = TRAIL_BYTE_1; break; default: // too long! Longest valid UTF-8 is 4 bytes (lead + three) // or if < 0 we got a trail byte in the lead byte position throw new MalformedInputException(count); } // switch (length) break; case TRAIL_BYTE_1: if (leadByte == 0xF0 && aByte < 0x90) throw new MalformedInputException(count); if (leadByte == 0xF4 && aByte > 0x8F) throw new MalformedInputException(count); if (leadByte == 0xE0 && aByte < 0xA0) throw new MalformedInputException(count); if (leadByte == 0xED && aByte > 0x9F) throw new MalformedInputException(count); // falls through to regular trail-byte test!! case TRAIL_BYTE: if (aByte < 0x80 || aByte > 0xBF) throw new MalformedInputException(count); if (--length == 0) { state = LEAD_BYTE; } else { state = TRAIL_BYTE; } break; } // switch (state) count++; } } | 48130 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/48130/ade1478723edce95f407a038027d26b7e05459d5/Text.java/buggy/src/java/org/apache/hadoop/io/Text.java | [
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bugzillaReportSubmitForm.submitReportToRepository(); | bugzillaReportSubmitForm.submitReportToRepository(connector.getClientManager().getClient(repository)); | protected void timeTracker(int taskid, boolean enableDeadline) throws Exception { BugzillaTask bugtask = generateLocalTaskAndDownload("" + taskid); assertEquals(taskid, Integer.parseInt(bugtask.getTaskData().getId())); assertEquals(RepositoryTaskSyncState.SYNCHRONIZED, bugtask.getSyncState()); Set<AbstractRepositoryTask> tasks = new HashSet<AbstractRepositoryTask>(); tasks.add(bugtask); // synchAndAssertState(tasks, RepositoryTaskSyncState.SYNCHRONIZED); TasksUiPlugin.getRepositoryManager().setSyncTime(repository, bugtask.getLastSyncDateStamp(), TasksUiPlugin.getDefault().getRepositoriesFilePath()); // connector.synchronizeChanged(repository); // Set<AbstractRepositoryTask> changedTasks = // connector.getOfflineTaskHandler().getChangedSinceLastSync(repository, // tasks); // assertEquals(1, changedTasks.size()); assertNotNull(repository.getUserName()); assertNotNull(repository.getPassword()); float estimatedTime, remainingTime, actualTime, addTime; String deadline = null; RepositoryTaskData bugtaskdata = bugtask.getTaskData(); estimatedTime = Float.parseFloat(bugtaskdata.getAttributeValue(BugzillaReportElement.ESTIMATED_TIME .getKeyString())); remainingTime = Float.parseFloat(bugtaskdata.getAttributeValue(BugzillaReportElement.REMAINING_TIME .getKeyString())); actualTime = Float.parseFloat(bugtaskdata.getAttributeValue(BugzillaReportElement.ACTUAL_TIME.getKeyString())); if (enableDeadline) deadline = bugtaskdata.getAttributeValue(BugzillaReportElement.DEADLINE.getKeyString()); estimatedTime += 2; remainingTime += 1.5; addTime = 0.75f; if (enableDeadline) deadline = generateNewDay(); bugtaskdata.setAttributeValue(BugzillaReportElement.ESTIMATED_TIME.getKeyString(), "" + estimatedTime); bugtaskdata.setAttributeValue(BugzillaReportElement.REMAINING_TIME.getKeyString(), "" + remainingTime); bugtaskdata.setAttributeValue(BugzillaReportElement.WORK_TIME.getKeyString(), "" + addTime); if (enableDeadline) bugtaskdata.setAttributeValue(BugzillaReportElement.DEADLINE.getKeyString(), deadline); BugzillaReportSubmitForm bugzillaReportSubmitForm; for (AbstractRepositoryTask task : tasks) { task.getTaskData().setAttributeValue(BugzillaReportElement.ADD_COMMENT.getKeyString(), "New Estimate: " + estimatedTime + "\nNew Remaining: " + remainingTime + "\nAdd: " + addTime); bugzillaReportSubmitForm = makeExistingBugPost(task.getTaskData()); bugzillaReportSubmitForm.submitReportToRepository(); } // assertEquals("Changed reports expected ", 1, // connector.getOfflineTaskHandler().getChangedSinceLastSync(repository, // tasks).size()); synchAndAssertState(tasks, RepositoryTaskSyncState.INCOMING); // synchAndAssertState(tasks, RepositoryTaskSyncState.SYNCHRONIZED); bugtaskdata = bugtask.getTaskData(); assertEquals(estimatedTime, Float.parseFloat(bugtaskdata.getAttributeValue(BugzillaReportElement.ESTIMATED_TIME .getKeyString()))); assertEquals(remainingTime, Float.parseFloat(bugtaskdata.getAttributeValue(BugzillaReportElement.REMAINING_TIME .getKeyString()))); assertEquals(actualTime + addTime, Float.parseFloat(bugtaskdata .getAttributeValue(BugzillaReportElement.ACTUAL_TIME.getKeyString()))); if (enableDeadline) assertEquals(deadline, bugtaskdata.getAttributeValue(BugzillaReportElement.DEADLINE.getKeyString())); } | 51151 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51151/fc5f7c9fb68f9ce217976cd7477a47d3a7cdaf92/BugzillaRepositoryConnectorTest.java/buggy/org.eclipse.mylyn.bugzilla.tests/src/org/eclipse/mylyn/bugzilla/tests/BugzillaRepositoryConnectorTest.java | [
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if ((start == currpos) && (Character.isLetterOrDigit(str.charAt(currpos)) == false)) | if ((start == currpos) && (Character.isLetterOrDigit(str.charAt(currpos)) == false)) | public int countTokens() { int count = 0; int currpos = currentPosition; while (currpos < maxPosition) { int start = currpos; while ((currpos < maxPosition) && Character.isLetterOrDigit(str.charAt(currpos))) { currpos++; } if ((start == currpos) && (Character.isLetterOrDigit(str.charAt(currpos)) == false)) { currpos++; } count++; } return count; } | 2723 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2723/77ad973f1d6ad8f28fd358f2ba4d4c63da65d953/ElemNumber.java/buggy/src/org/apache/xalan/templates/ElemNumber.java | [
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protected UMOMessage doReceive(UMOImmutableEndpoint endpoint, long timeout) throws Exception | protected synchronized UMOMessage doReceive(UMOImmutableEndpoint endpoint, long timeout) throws Exception | protected UMOMessage doReceive(UMOImmutableEndpoint endpoint, long timeout) throws Exception { long t0 = System.currentTimeMillis(); if (timeout < 0) { timeout = Long.MAX_VALUE; } do { if (hasMessages(folder)) { int count = getMessageCount(folder); if (count > 0) { Message message = getNextMessage(folder); // so we don't get the same message again flagMessage(folder, message); return new MuleMessage(connector.getMessageAdapter(message)); } else if (count == -1) { throw new MessagingException("Cannot monitor folder: " + folder.getFullName() + " as folder is closed"); } } long sleep = Math.min(this.connector.getCheckFrequency(), timeout - (System.currentTimeMillis() - t0)); if (sleep > 0) { if (logger.isDebugEnabled()) { logger.debug("No results, sleeping for " + sleep); } Thread.sleep(sleep); } else { logger.debug("Timeout"); return null; } } while (true); } | 2370 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2370/2728140743f07f856e93b813ce619c77291354bf/Pop3MessageDispatcher.java/clean/transports/email/src/main/java/org/mule/providers/email/Pop3MessageDispatcher.java | [
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assertTrue("3 returns a wrong port", u1.getPort() == -1); assertTrue("3 returns a wrong file", u1.getFile().equals( "/dir1/dir2/../file.java")); assertTrue("3 returns a wrong anchor", u1.getRef() == null); | assertEquals("3 returns a wrong port", -1, u1.getPort()); assertEquals("3 returns a wrong file", "/dir1/dir2/../file.java", u1.getFile()); assertNull("3 returns a wrong anchor", u1.getRef()); | public void test_ConstructorLjava_net_URLLjava_lang_String() { // Test for method java.net.URL(java.net.URL, java.lang.String) try { u = new URL("http://www.yahoo.com"); URL uf = new URL("file://www.yahoo.com"); // basic ones u1 = new URL(u, "file.java"); assertTrue("1 returns a wrong protocol", u1.getProtocol().equals( "http")); assertTrue("1 returns a wrong host", u1.getHost().equals( "www.yahoo.com")); assertTrue("1 returns a wrong port", u1.getPort() == -1); assertTrue("1 returns a wrong file", u1.getFile().equals( "/file.java")); assertTrue("1 returns a wrong anchor", u1.getRef() == null); URL u1f = new URL(uf, "file.java"); assertTrue("1f returns a wrong protocol", u1f.getProtocol().equals( "file")); assertTrue("1f returns a wrong host", u1f.getHost().equals( "www.yahoo.com")); assertTrue("1f returns a wrong port", u1f.getPort() == -1); assertTrue("1f returns a wrong file", u1f.getFile().equals( "/file.java")); assertTrue("1f returns a wrong anchor", u1f.getRef() == null); u1 = new URL(u, "dir1/dir2/../file.java"); assertTrue("3 returns a wrong protocol", u1.getProtocol().equals( "http")); assertTrue("3 returns a wrong host: " + u1.getHost(), u1.getHost() .equals("www.yahoo.com")); assertTrue("3 returns a wrong port", u1.getPort() == -1); assertTrue("3 returns a wrong file", u1.getFile().equals( "/dir1/dir2/../file.java")); assertTrue("3 returns a wrong anchor", u1.getRef() == null); u1 = new URL(u, "http:dir1/dir2/../file.java"); assertTrue("3a returns a wrong protocol", u1.getProtocol().equals( "http")); assertTrue("3a returns a wrong host: " + u1.getHost(), u1.getHost() .equals("")); assertTrue("3a returns a wrong port", u1.getPort() == -1); assertTrue("3a returns a wrong file", u1.getFile().equals( "dir1/dir2/../file.java")); assertTrue("3a returns a wrong anchor", u1.getRef() == null); u = new URL("http://www.apache.org/testing/"); u1 = new URL(u, "file.java"); assertTrue("4 returns a wrong protocol", u1.getProtocol().equals( "http")); assertTrue("4 returns a wrong host", u1.getHost().equals( "www.apache.org")); assertTrue("4 returns a wrong port", u1.getPort() == -1); assertTrue("4 returns a wrong file", u1.getFile().equals( "/testing/file.java")); assertTrue("4 returns a wrong anchor", u1.getRef() == null); uf = new URL("file://www.apache.org/testing/"); u1f = new URL(uf, "file.java"); assertTrue("4f returns a wrong protocol", u1f.getProtocol().equals( "file")); assertTrue("4f returns a wrong host", u1f.getHost().equals( "www.apache.org")); assertTrue("4f returns a wrong port", u1f.getPort() == -1); assertTrue("4f returns a wrong file", u1f.getFile().equals( "/testing/file.java")); assertTrue("4f returns a wrong anchor", u1f.getRef() == null); uf = new URL("file:/testing/"); u1f = new URL(uf, "file.java"); assertTrue("4fa returns a wrong protocol", u1f.getProtocol() .equals("file")); assertTrue("4fa returns a wrong host", u1f.getHost().equals("")); assertTrue("4fa returns a wrong port", u1f.getPort() == -1); assertTrue("4fa returns a wrong file", u1f.getFile().equals( "/testing/file.java")); assertTrue("4fa returns a wrong anchor", u1f.getRef() == null); uf = new URL("file:testing/"); u1f = new URL(uf, "file.java"); assertTrue("4fb returns a wrong protocol", u1f.getProtocol() .equals("file")); assertTrue("4fb returns a wrong host", u1f.getHost().equals("")); assertTrue("4fb returns a wrong port", u1f.getPort() == -1); assertTrue("4fb returns a wrong file", u1f.getFile().equals( "testing/file.java")); assertTrue("4fb returns a wrong anchor", u1f.getRef() == null); u1f = new URL(uf, "file:file.java"); assertTrue("4fc returns a wrong protocol", u1f.getProtocol() .equals("file")); assertTrue("4fc returns a wrong host", u1f.getHost().equals("")); assertTrue("4fc returns a wrong port", u1f.getPort() == -1); assertTrue("4fc returns a wrong file", u1f.getFile().equals( "file.java")); assertTrue("4fc returns a wrong anchor", u1f.getRef() == null); u1f = new URL(uf, "file:"); assertTrue("4fd returns a wrong protocol", u1f.getProtocol() .equals("file")); assertTrue("4fd returns a wrong host", u1f.getHost().equals("")); assertTrue("4fd returns a wrong port", u1f.getPort() == -1); assertTrue("4fd returns a wrong file", u1f.getFile().equals("")); assertTrue("4fd returns a wrong anchor", u1f.getRef() == null); u = new URL("http://www.apache.org/testing"); u1 = new URL(u, "file.java"); assertTrue("5 returns a wrong protocol", u1.getProtocol().equals( "http")); assertTrue("5 returns a wrong host", u1.getHost().equals( "www.apache.org")); assertTrue("5 returns a wrong port", u1.getPort() == -1); assertTrue("5 returns a wrong file", u1.getFile().equals( "/file.java")); assertTrue("5 returns a wrong anchor", u1.getRef() == null); uf = new URL("file://www.apache.org/testing"); u1f = new URL(uf, "file.java"); assertTrue("5f returns a wrong protocol", u1f.getProtocol().equals( "file")); assertTrue("5f returns a wrong host", u1f.getHost().equals( "www.apache.org")); assertTrue("5f returns a wrong port", u1f.getPort() == -1); assertTrue("5f returns a wrong file", u1f.getFile().equals( "/file.java")); assertTrue("5f returns a wrong anchor", u1f.getRef() == null); uf = new URL("file:/testing"); u1f = new URL(uf, "file.java"); assertTrue("5fa returns a wrong protocol", u1f.getProtocol() .equals("file")); assertTrue("5fa returns a wrong host", u1f.getHost().equals("")); assertTrue("5fa returns a wrong port", u1f.getPort() == -1); assertTrue("5fa returns a wrong file", u1f.getFile().equals( "/file.java")); assertTrue("5fa returns a wrong anchor", u1f.getRef() == null); uf = new URL("file:testing"); u1f = new URL(uf, "file.java"); assertTrue("5fb returns a wrong protocol", u1f.getProtocol() .equals("file")); assertTrue("5fb returns a wrong host", u1f.getHost().equals("")); assertTrue("5fb returns a wrong port", u1f.getPort() == -1); assertTrue("5fb returns a wrong file", u1f.getFile().equals( "file.java")); assertTrue("5fb returns a wrong anchor", u1f.getRef() == null); u = new URL("http://www.apache.org/testing/foobaz"); u1 = new URL(u, "/file.java"); assertTrue("6 returns a wrong protocol", u1.getProtocol().equals( "http")); assertTrue("6 returns a wrong host", u1.getHost().equals( "www.apache.org")); assertTrue("6 returns a wrong port", u1.getPort() == -1); assertTrue("6 returns a wrong file", u1.getFile().equals( "/file.java")); assertTrue("6 returns a wrong anchor", u1.getRef() == null); uf = new URL("file://www.apache.org/testing/foobaz"); u1f = new URL(uf, "/file.java"); assertTrue("6f returns a wrong protocol", u1f.getProtocol().equals( "file")); assertTrue("6f returns a wrong host", u1f.getHost().equals( "www.apache.org")); assertTrue("6f returns a wrong port", u1f.getPort() == -1); assertTrue("6f returns a wrong file", u1f.getFile().equals( "/file.java")); assertTrue("6f returns a wrong anchor", u1f.getRef() == null); u = new URL("http://www.apache.org:8000/testing/foobaz"); u1 = new URL(u, "/file.java"); assertTrue("7 returns a wrong protocol", u1.getProtocol().equals( "http")); assertTrue("7 returns a wrong host", u1.getHost().equals( "www.apache.org")); assertTrue("7 returns a wrong port", u1.getPort() == 8000); assertTrue("7 returns a wrong file", u1.getFile().equals( "/file.java")); assertTrue("7 returns a wrong anchor", u1.getRef() == null); u = new URL("http://www.apache.org/index.html"); u1 = new URL(u, "#bar"); assertTrue("8 returns a wrong host", u1.getHost().equals( "www.apache.org")); assertTrue("8 returns a wrong file", u1.getFile().equals( "/index.html")); assertTrue("8 returns a wrong anchor", u1.getRef().equals("bar")); u = new URL("http://www.apache.org/index.html#foo"); u1 = new URL(u, "http:#bar"); assertTrue("9 returns a wrong host", u1.getHost().equals( "www.apache.org")); assertTrue("9 returns a wrong file", u1.getFile().equals( "/index.html")); assertTrue("9 returns a wrong anchor", u1.getRef().equals("bar")); u = new URL("http://www.apache.org/index.html"); u1 = new URL(u, ""); assertTrue("10 returns a wrong host", u1.getHost().equals( "www.apache.org")); assertTrue("10 returns a wrong file", u1.getFile().equals( "/index.html")); assertTrue("10 returns a wrong anchor", u1.getRef() == null); uf = new URL("file://www.apache.org/index.html"); u1f = new URL(uf, ""); assertTrue("10f returns a wrong host", u1.getHost().equals( "www.apache.org")); assertTrue("10f returns a wrong file", u1.getFile().equals( "/index.html")); assertTrue("10f returns a wrong anchor", u1.getRef() == null); u = new URL("http://www.apache.org/index.html"); u1 = new URL(u, "http://www.apache.org"); assertTrue("11 returns a wrong host", u1.getHost().equals( "www.apache.org")); assertTrue("11 returns a wrong file", u1.getFile().equals("")); assertTrue("11 returns a wrong anchor", u1.getRef() == null); // test for question mark processing u = new URL("http://www.foo.com/d0/d1/d2/cgi-bin?foo=bar/baz"); // test for relative file and out of bound "/../" processing u1 = new URL(u, "../dir1/./dir2/../file.java"); assertTrue("A) returns a wrong file: " + u1.getFile(), u1.getFile() .equals("/d0/d1/dir1/file.java")); // test for absolute and relative file processing u1 = new URL(u, "/../dir1/./dir2/../file.java"); assertTrue("B) returns a wrong file", u1.getFile().equals( "/../dir1/./dir2/../file.java")); } catch (Exception e) { fail("1 Exception during tests : " + e.getMessage()); } try { // u should raise a MalFormedURLException because u, the context is // null u = null; u1 = new URL(u, "file.java"); } catch (MalformedURLException e) { return; } catch (Exception e) { fail("2 Exception during tests : " + e.getMessage()); } fail("didn't throw the expected MalFormedURLException"); } | 54769 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54769/181e940cd92dfff67639d98e991206d375a987ea/URLTest.java/buggy/modules/luni/src/test/java/tests/api/java/net/URLTest.java | [
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return formModel.getPropertyAccessStrategy(); } | return formModel.getPropertyAccessStrategy(); } | public PropertyAccessStrategy getPropertyAccessStrategy() { return formModel.getPropertyAccessStrategy(); } | 55916 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55916/1ca92818155f3e0a4aed29e15c396b3c749e2b10/SwingFormModel.java/buggy/src/org/springframework/richclient/forms/SwingFormModel.java | [
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MavenExecutionResponse response = processProject( request, project, dispatcher ); | MavenExecutionResponse response = processProject( session, goals, project, dispatcher ); | public MavenExecutionResponse execute( MavenExecutionRequest request ) throws ReactorException { if ( request.getSettings().isOffline() ) { getLogger().info( "Maven is running in offline mode." ); } try { resolveParameters( request.getSettings() ); } catch ( ComponentLookupException e ) { throw new ReactorException( "Unable to configure Maven for execution", e ); } catch ( ComponentLifecycleException e ) { throw new ReactorException( "Unable to configure Maven for execution", e ); } EventDispatcher dispatcher = request.getEventDispatcher(); String event = MavenEvents.REACTOR_EXECUTION; dispatcher.dispatchStart( event, request.getBaseDirectory() ); List projects; try { projects = collectProjects( request.getFiles(), request.getLocalRepository(), request.isRecursive(), request.getSettings() ); projects = ProjectSorter.getSortedProjects( projects ); if ( projects.isEmpty() ) { List externalProfiles = getActiveExternalProfiles( null, request.getSettings() ); projects.add( projectBuilder.buildStandaloneSuperProject( request.getLocalRepository(), externalProfiles ) ); } } catch ( IOException e ) { throw new ReactorException( "Error processing projects for the reactor: ", e ); } catch ( CycleDetectedException e ) { throw new ReactorException( "Error processing projects for the reactor: ", e ); } catch ( ArtifactResolutionException e ) { dispatcher.dispatchError( event, request.getBaseDirectory(), e ); MavenExecutionResponse response = new MavenExecutionResponse(); response.setStart( new Date() ); response.setFinish( new Date() ); response.setException( e ); logFailure( response, e, null ); return response; } catch ( ProjectBuildingException e ) { dispatcher.dispatchError( event, request.getBaseDirectory(), e ); MavenExecutionResponse response = new MavenExecutionResponse(); response.setStart( new Date() ); response.setFinish( new Date() ); response.setException( e ); logFailure( response, e, null ); return response; } try { for ( Iterator iterator = projects.iterator(); iterator.hasNext(); ) { MavenProject project = (MavenProject) iterator.next(); line(); getLogger().info( "Building " + project.getName() ); line(); try { MavenExecutionResponse response = processProject( request, project, dispatcher ); if ( response.isExecutionFailure() ) { dispatcher.dispatchError( event, request.getBaseDirectory(), response.getException() ); return response; } } catch ( LifecycleExecutionException e ) { throw new ReactorException( "Error executing project within the reactor", e ); } } dispatcher.dispatchEnd( event, request.getBaseDirectory() ); // TODO: not really satisfactory return null; } catch ( ReactorException e ) { dispatcher.dispatchError( event, request.getBaseDirectory(), e ); throw e; } } | 50542 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50542/701ef520a30c7b30dcdf2e4a4f06548cc06fbf0b/DefaultMaven.java/buggy/maven-core/src/main/java/org/apache/maven/DefaultMaven.java | [
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HttpServletResponse response) throws Exception { | HttpServletResponse response) throws Exception { | public ModelAndView handleRequest(HttpServletRequest request, HttpServletResponse response) throws Exception { // Step 1: determine the name of the controller. // This maps to a slash + the name of the controller. String uri = this.urlPathHelper.getLookupPathForRequest(request); String[] uriParts = StringUtils.tokenizeToStringArray(uri, SLASH, true, true); String controllerName = uriParts[0]; // Step 2: lookup the controller in the application. GrailsControllerClass controllerClass = this.application.getController(controllerName); if (controllerClass == null) { String fullControllerName = controllerName.substring(0, 1).toUpperCase() + controllerName.substring(1) + DefaultGrailsControllerClass.CONTROLLER; throw new UnknownControllerException("Controller named [" + controllerName + "] could not be found. Make sure [" + fullControllerName + "] is defined and available!"); } // Step 3: load controller from application context. GroovyObject controller = (GroovyObject)this.applicationContext.getBean(controllerName + DefaultGrailsControllerClass.CONTROLLER); // Step 4: get closure property name for URI. String closurePropertyName = controllerClass.getClosurePropertyName(uri); if (closurePropertyName == null) { throw new NoClosurePropertyForURIException("Could not find closure property for URI [" + uri + "] for controller [" + controllerClass.getFullName() + "]!"); } // Step 5: get the view name for this closure property. String viewName = controllerClass.getViewName(closurePropertyName); boolean viewNameBlank = (viewName == null || viewName.length() == 0); // Step 6: get closure from closure property Closure closure = (Closure)controller.getProperty(closurePropertyName); // Step 7: determine argument count and execute. Object returnValue = null; if (closure.getParameterTypes().length == 1) { // closure may have zero or one parameter, we cannot be sure. returnValue = closure.call(new Object[] { new GrailsHttpServletRequest(request) }); } else if (closure.getParameterTypes().length == 2) { returnValue = closure.call(new Object[] { new GrailsHttpServletRequest(request), response }); } else { throw new IncompatibleParameterCountException("Closure on property [" + closurePropertyName + "] in [" + controllerClass.getFullName() + "] has an incompatible parameter count [" + closure.getParameterTypes().length + "]! Supported values are 0 and 2."); } // Step 8: determine return value type and handle accordingly if (returnValue == null) { if (viewNameBlank) { return null; } else { return new ModelAndView(viewName); } } else if (returnValue instanceof Map) { if (viewNameBlank) { throw new NoViewNameDefinedException("Map instance returned by and view name specified for closure on property [" + closurePropertyName + "] in controller [" + controllerClass.getFullName() + "]!"); } else { return new ModelAndView(viewName, (Map)returnValue); } } else if (returnValue instanceof ModelAndView) { ModelAndView modelAndView = (ModelAndView)returnValue; if (modelAndView.getView() == null && modelAndView.getViewName() == null) { if (viewNameBlank) { throw new NoViewNameDefinedException("ModelAndView instance returned by and no view name defined by nor for closure on property [" + closurePropertyName + "] in controller [" + controllerClass.getFullName() + "]!"); } else { modelAndView.setViewName(viewName); } } return modelAndView; } throw new UnsupportedReturnValueException("Return value [" + returnValue + "] is not supported for closure property [" + closurePropertyName + "] in controller [" + controllerClass.getFullName() + "]!"); } | 46315 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46315/19641367ddff28fc77240ad7316776a7e4460c62/SimpleGrailsController.java/buggy/grails/src/web/org/codehaus/groovy/grails/web/servlet/mvc/SimpleGrailsController.java | [
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Object val = callDirect(cx, scope, newInstance, <directCallArgs>); | Object val = <body-name>(cx, scope, newInstance, <directCallArgs>); | private void emitDirectConstructor() {/* we generate .. Scriptable directConstruct(<directCallArgs>) { Scriptable newInstance = createObject(cx, scope); Object val = callDirect(cx, scope, newInstance, <directCallArgs>); if (val instanceof Scriptable && val != Undefined.instance) { return (Scriptable) val; } return newInstance; }*/ short flags = (short)(ClassFileWriter.ACC_PUBLIC | ClassFileWriter.ACC_FINAL); cfw.startMethod("constructDirect", fnCurrent.getDirectCallMethodSignature(), flags); int argCount = fnCurrent.getParamCount(); int firstLocal = (4 + argCount * 3) + 1; cfw.addALoad(0); // this cfw.addALoad(1); // cx cfw.addALoad(2); // scope cfw.addInvoke(ByteCode.INVOKEVIRTUAL, "org/mozilla/javascript/BaseFunction", "createObject", "(Lorg/mozilla/javascript/Context;" +"Lorg/mozilla/javascript/Scriptable;" +")Lorg/mozilla/javascript/Scriptable;"); cfw.addAStore(firstLocal); cfw.addALoad(0); cfw.addALoad(1); cfw.addALoad(2); cfw.addALoad(firstLocal); for (int i = 0; i < argCount; i++) { cfw.addALoad(4 + (i * 3)); cfw.addDLoad(5 + (i * 3)); } cfw.addALoad(4 + argCount * 3); cfw.addInvoke(ByteCode.INVOKEVIRTUAL, generatedClassName, "callDirect", fnCurrent.getDirectCallMethodSignature()); int exitLabel = cfw.acquireLabel(); cfw.add(ByteCode.DUP); // make a copy of callDirect result cfw.add(ByteCode.INSTANCEOF, "org/mozilla/javascript/Scriptable"); cfw.add(ByteCode.IFEQ, exitLabel); cfw.add(ByteCode.DUP); // make a copy of callDirect result pushUndefined(cfw); cfw.add(ByteCode.IF_ACMPEQ, exitLabel); // cast callDirect result cfw.add(ByteCode.CHECKCAST, "org/mozilla/javascript/Scriptable"); cfw.add(ByteCode.ARETURN); cfw.markLabel(exitLabel); cfw.addALoad(firstLocal); cfw.add(ByteCode.ARETURN); cfw.stopMethod((short)(firstLocal + 1), null); } | 47609 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47609/3c9b84173796cf5a1eb1f786e5ba6af89b66fcab/Codegen.java/buggy/js/rhino/src/org/mozilla/javascript/optimizer/Codegen.java | [
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public Object getContent(Context c) { | public List getContent(Context c) { | public Object getContent(Context c) { return ContentUtil.getInlineContentList(_elem, c); } | 53937 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/53937/bbe26e114cd1f823901a5ca3d63b5fccfdfedf81/FloatedBlockContent.java/buggy/src/java/org/xhtmlrenderer/layout/content/FloatedBlockContent.java | [
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} else if (seen == NEW && getClassConstantOperand().equals(getClassName())) { instanceCreated = true; instanceCreatedPC = getPC(); } else if (seen == PUTSTATIC || seen == GETSTATIC || seen == INVOKESTATIC || seen == NEW) if (getPC() + 6 < codeBytes.length) requires.add(getDottedClassConstantOperand()); | } else if (seen == NEW && getClassConstantOperand().equals(getClassName())) { instanceCreated = true; instanceCreatedPC = getPC(); } else if (seen == PUTSTATIC || seen == GETSTATIC || seen == INVOKESTATIC || seen == NEW) if (getPC() + 6 < codeBytes.length) requires.add(getDottedClassConstantOperand()); | public void sawOpcode(int seen) { if (seen == PUTSTATIC && getClassConstantOperand().equals(getClassName())) { // Don't do this check; it generates too many false // positives. We need to do a more detailed check // of which variables could be seen. if (REPORT_CREATE_INSTANCE_BEFORE_FIELDS_ASSIGNED && instanceCreated && !instanceCreatedWarningGiven) { String okSig = "L" + getClassName() + ";"; if (!okSig.equals(getSigConstantOperand())) { bugReporter.reportBug(new BugInstance("SI_INSTANCE_BEFORE_FINALS_ASSIGNED", NORMAL_PRIORITY) .addClassAndMethod(this) .addSourceLine(this, instanceCreatedPC)); instanceCreatedWarningGiven = true; } } } else if (seen == NEW && getClassConstantOperand().equals(getClassName())) { instanceCreated = true; instanceCreatedPC = getPC(); } else if (seen == PUTSTATIC || seen == GETSTATIC || seen == INVOKESTATIC || seen == NEW) if (getPC() + 6 < codeBytes.length) requires.add(getDottedClassConstantOperand()); } | 7352 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7352/4748a5a9b76f3dd763ee6bc7755c932a711bd6a6/InitializationChain.java/clean/findbugs/src/java/edu/umd/cs/findbugs/detect/InitializationChain.java | [
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while (enum.hasMoreElements()) { | while (rslEnum.hasMoreElements()) { | public int generateGCMapEntry(OPT_GCIRMapElement irMapElem) throws InterruptiblePragma { // the index into the GC maps we will use for this instruction. int mapIndex = NO_MAP_ENTRY; // Before requesting the (first) map entry, lets make sure we // will need it. If the reg/spill list is empty, we don't // need a map slot, i.e., no references are live at this instruction OPT_RegSpillListEnumerator enum = irMapElem.regSpillListEnumerator(); if (enum.hasMoreElements()) { // For efficiency we create our own bit map and then set the // appropriate array value int bitMap = 0; // count the spills so we know how big of an array we'll need int numSpills = 0; int numRegs = 0; // Because the output data structure (the map) stores register // information before spills, we need to traverse the list twice // the first time we get the register mask, the 2nd time we get // the spills // process the register while (enum.hasMoreElements()) { OPT_RegSpillListElement elem = (OPT_RegSpillListElement) enum.nextElement(); if (elem.isSpill()) { numSpills++; } else { numRegs++; int realRegNumber = elem.getRealRegNumber(); if (VM.VerifyAssertions && realRegNumber > LAST_GCMAP_REG) { System.out.println(elem); System.out.println(LAST_GCMAP_REG); VM._assert(false, "reg > last GC Map Reg!!"); } // get the bit position for this register number int bitPosition = getRegBitPosition(realRegNumber); // Set the appropriate bit bitMap = bitMap | (NEXT_BIT >>> bitPosition); } } | 4011 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4011/b456534d9b99de463325c8cc3907b41fc605cb4c/VM_OptGCMap.java/clean/rvm/src/vm/compilers/optimizing/vmInterface/services/VM_OptGCMap.java | [
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FileEditorManagerImpl.openFileImpl3(window, entry.myFile, false, entry); | getManager().openFileImpl3(window, entry.myFile, false, entry); | public JPanel readExternalPanel(final Element element) { final Element splitterElement = element.getChild("splitter"); if (splitterElement != null) { LOG.info("splitter"); final JPanel res = new JPanel(new BorderLayout()); final boolean orientation = "vertical".equals(splitterElement.getAttributeValue("split-orientation")); final float proportion = Float.valueOf(splitterElement.getAttributeValue("split-proportion")).floatValue(); final Element first = splitterElement.getChild("split-first"); final Element second = splitterElement.getChild("split-second"); final Splitter splitter = new Splitter(orientation, proportion, 0.1f, 0.9f); splitter.setFirstComponent(readExternalPanel(first)); splitter.setSecondComponent(readExternalPanel(second)); res.add(splitter, BorderLayout.CENTER); return res; } else { final Element leaf = element.getChild("leaf"); if (leaf != null) { final EditorWindow window = new EditorWindow(this); try { window.myInsideTabChange++; final List<Element> children = leaf.getChildren("file"); VirtualFile currentFile = null; for (final Element file : children) { final HistoryEntry entry; entry = new HistoryEntry(getManager().myProject, file.getChild(HistoryEntry.TAG)); FileEditorManagerImpl.openFileImpl3(window, entry.myFile, false, entry); if (getManager().isFileOpen(entry.myFile)) { window.setFilePinned(entry.myFile, Boolean.valueOf(file.getAttributeValue("pinned")).booleanValue()); if (Boolean.valueOf(file.getAttributeValue("current-in-tab")).booleanValue()) { currentFile = entry.myFile; } if (Boolean.valueOf(file.getAttributeValue("current")).booleanValue()) { setCurrentWindow(window, false); } } } if (currentFile != null) { final EditorComposite editor = window.findFileComposite(currentFile); if (editor != null) { window.setSelectedEditor(editor); } } } catch (InvalidDataException e) { } finally { window.myInsideTabChange--; } return window.myPanel; } } return null; } | 56627 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56627/00c1daa523aa004c3bcced6f2bf1473102f1ad90/EditorsSplitters.java/clean/source/com/intellij/openapi/fileEditor/impl/EditorsSplitters.java | [
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for(Enumeration en = hooks.elements(); en.hasMoreElements();) { ((LoggerHook) en.nextElement()).log(o,c,msg,e,priority); | LoggerHook[] myHooks = hooks; for(int i=0;i<myHooks.length;i++) { myHooks[i].log(o,c,msg,e,priority); | public void log(Object o, Class c, String msg, Throwable e, int priority){ for(Enumeration en = hooks.elements(); en.hasMoreElements();) { ((LoggerHook) en.nextElement()).log(o,c,msg,e,priority); } } | 48807 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/48807/0400e73e7503ab43211657c44d8448afd6346cce/LoggerHookChain.java/clean/src/freenet/support/LoggerHookChain.java | [
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endExplanationString = "(Sho) Game aborted by Black at move 1"; | endExplanationString = "(Sho) Game aborted by "+loser+" at move 1"; | protected String getEndExplanationString(int status, int mode){ String endExplanationString = "(?) No result [specific reason unknown]"; switch (status){ case 0: switch (mode){ case 0: endExplanationString = "(Res) Black resigns"; break; case 1: endExplanationString = "(Mat) Black checkmated"; break; case 2: endExplanationString = "(Fla) Black forfeits on time."; break; case 3: endExplanationString = "(Adj) White declared the winner by adjudication"; break; case 4: endExplanationString = "(BQ) Black disconnected and forfeits"; break; case 5: endExplanationString = "(BQ) Black got disconnected and forfeits"; break; case 6: endExplanationString = "(BQ) Unregistered player Black disconnected and forfeits"; break; case 7: endExplanationString = "(Res) Black's partner resigns"; break; case 8: endExplanationString = "(Mat) Black's partner checkmated"; break; case 9: endExplanationString = "(Fla) Black's partner forfeits on time"; break; case 10: endExplanationString = "(BQ) Black's partner disconnected and forfeits"; break; case 11: endExplanationString = "(BQ) Black disconnected and forfeits [obsolete?]"; break; case 12: endExplanationString = "(1-0) White wins [specific reason unknown]"; break; } break; case 1: switch (mode){ case 0: endExplanationString = "(Agr) Game drawn by mutual agreement"; break; case 1: endExplanationString = "(Sta) Black stalemated"; break; case 2: endExplanationString = "(Rep) Game drawn by repetition"; break; case 3: endExplanationString = "(50) Game drawn by the 50 move rule"; break; case 4: endExplanationString = "(TM) Black ran out of time and White has no material to mate"; break; case 5: endExplanationString = "(NM) Game drawn because neither player has mating material"; break; case 6: endExplanationString = "(NT) Game drawn because both players ran out of time"; break; case 7: endExplanationString = "(Adj) Game drawn by adjudication"; break; case 8: endExplanationString = "(Agr) Partner's game drawn by mutual agreement"; break; case 9: endExplanationString = "(NT) Partner's game drawn because both players ran out of time"; break; case 10: endExplanationString = "(1/2) Game drawn [specific reason unknown]"; break; } break; case 2: switch (mode){ case 0: endExplanationString = "(?) Game adjourned by mutual agreement"; break; case 1: endExplanationString = "(?) Game adjourned when Black disconnected"; break; case 2: endExplanationString = "(?) Game adjourned by system shutdown"; break; case 3: endExplanationString = "(?) Game courtesyadjourned by Black"; break; case 4: endExplanationString = "(?) Game adjourned by an administrator"; break; case 5: endExplanationString = "(?) Game adjourned when Black got disconnected"; break; } break; case 3: switch (mode){ case 0: endExplanationString = "(Agr) Game aborted by mutual agreement"; break; case 1: endExplanationString = "(BQ) Game aborted when Black disconnected"; break; case 2: endExplanationString = "(SD) Game aborted by system shutdown"; break; case 3: endExplanationString = "(BA) Game courtesyaborted by Black"; break; case 4: endExplanationString = "(Adj) Game aborted by an administrator"; break; case 5: endExplanationString = "(Sho) Game aborted because it's too short to adjourn"; break; case 6: endExplanationString = "(BQ) Game aborted when Black's partner disconnected"; break; case 7: endExplanationString = "(Sho) Game aborted by Black at move 1"; break; case 8: endExplanationString = "(Sho) Game aborted by Black's partner at move 1"; break; case 9: endExplanationString = "(Sho) Game aborted because it's too short"; break; case 10: endExplanationString = "(Adj) Game aborted because Black's account expired"; break; case 11: endExplanationString = "(BQ) Game aborted when Black got disconnected"; break; case 12: endExplanationString = "(?) No result [specific reason unknown]"; break; } break; } return endExplanationString; } | 1161 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1161/732916e421bbf8a8c617fa1ed44064e3a3535e92/JinChessclubConnection.java/clean/src/free/jin/chessclub/JinChessclubConnection.java | [
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public boolean runInWorkThread(PluginManagerProgress progress) | public void runInWorkThread(PluginManagerProgress progress) | public boolean runInWorkThread(PluginManagerProgress progress) { return true; } | 8690 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8690/b923059c8829e79298e41ce7e4a83f970c79d84c/Roster.java/buggy/org/gjt/sp/jedit/pluginmgr/Roster.java | [
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String[] immuResources = configuration.getStringArray("import.immutable.resources"); if (immuResources == null) { immuResources = new String[0]; } List immutableResourcesOri = java.util.Arrays.asList(immuResources); ArrayList immutableResources = new ArrayList(); for (int i = 0; i < immutableResourcesOri.size(); i++) { String path = ((String)immutableResourcesOri.get(i)).trim(); if (path != null && !"".equals(path)) { immutableResources.add(path); if (getLog(CmsLog.CHANNEL_INIT).isInfoEnabled()) { getLog(CmsLog.CHANNEL_INIT).info(". Immutable resource : " + (i + 1) + " - " + path); } } } if (getLog(CmsLog.CHANNEL_INIT).isInfoEnabled()) { getLog(CmsLog.CHANNEL_INIT).info(". Immutable resources : " + ((immutableResources.size() > 0) ? 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OpenCms encoding : " + defaultEncoding); } String systemEncoding = null; try { systemEncoding = System.getProperty("file.encoding"); } catch (SecurityException se) { // security manager is active, but we will try other options before giving up } if (getLog(CmsLog.CHANNEL_INIT).isInfoEnabled()) { getLog(CmsLog.CHANNEL_INIT).info(". System file.encoding : " + systemEncoding); } if (!defaultEncoding.equals(systemEncoding)) { String msg = "OpenCms startup failure: System file.encoding '" + systemEncoding + "' not equal to OpenCms encoding '" + defaultEncoding + "'"; if (getLog(this).isFatalEnabled()) { getLog(this).fatal(OpenCmsCore.C_MSG_CRITICAL_ERROR + "1: " + msg); } throw new Exception(msg); } try { // check if the found encoding is supported // this will work with Java 1.4+ only if (!java.nio.charset.Charset.isSupported(defaultEncoding)) { defaultEncoding = m_systemInfo.getDefaultEncoding(); } } catch (Throwable t) { // will be thrown in Java < 1.4 (NoSuchMethodException etc.) // in Java < 1.4 there is no easy way to check if encoding is supported, // so you must make sure your setting in "opencms.properties" is correct. } m_systemInfo.setDefaultEncoding(defaultEncoding); // read server ethernet address (MAC) and init UUID generator String ethernetAddress = configuration.getString("server.ethernet.address", CmsUUID.getDummyEthernetAddress()); if (getLog(CmsLog.CHANNEL_INIT).isInfoEnabled()) { getLog(CmsLog.CHANNEL_INIT).info(". Ethernet address used: " + ethernetAddress); } CmsUUID.init(ethernetAddress); // set the server name String serverName = configuration.getString("server.name", "OpenCmsServer"); m_systemInfo.setServerName(serverName); // initialize the lock manager m_lockManager = CmsLockManager.getInstance(); // initialize the memory monitor m_memoryMonitor = CmsMemoryMonitor.initialize(configuration); // check the installed Java SDK try { if (getLog(CmsLog.CHANNEL_INIT).isInfoEnabled()) { String jdkinfo = System.getProperty("java.vm.name") + " "; jdkinfo += System.getProperty("java.vm.version") + " "; jdkinfo += System.getProperty("java.vm.info") + " "; jdkinfo += System.getProperty("java.vm.vendor") + " "; getLog(CmsLog.CHANNEL_INIT).info(". Java VM in use : " + jdkinfo); String osinfo = System.getProperty("os.name") + " "; osinfo += System.getProperty("os.version") + " "; osinfo += System.getProperty("os.arch") + " "; getLog(CmsLog.CHANNEL_INIT).info(". Operating sytem : " + osinfo); } } catch (Exception e) { if (getLog(this).isErrorEnabled()) { getLog(this).error(OpenCmsCore.C_MSG_CRITICAL_ERROR + "2", e); } // any exception here is fatal and will cause a stop in processing throw e; } // read the default user configuration m_defaultUsers = CmsDefaultUsers.initialize(configuration); try { // init the rb via the manager with the configuration // and init the cms-object with the rb. m_driverManager = CmsDriverManager.newInstance(configuration); } catch (Exception e) { if (getLog(this).isErrorEnabled()) { getLog(this).error(OpenCmsCore.C_MSG_CRITICAL_ERROR + "3", e); } // any exception here is fatal and will cause a stop in processing throw new CmsException("Database init failed", CmsException.C_RB_INIT_ERROR, e); } try { // initalize the Hashtable with all available mimetypes Hashtable mimeTypes = m_driverManager.readMimeTypes(); setMimeTypes(mimeTypes); if (getLog(CmsLog.CHANNEL_INIT).isInfoEnabled()) { getLog(CmsLog.CHANNEL_INIT).info(". Found mime types : " + mimeTypes.size() + " entrys"); } // if the System property opencms.disableScheduler is set to true, don't start scheduling if (!new Boolean(System.getProperty("opencms.disableScheduler")).booleanValue()) { // now initialise the OpenCms scheduler to launch cronjobs m_table = new CmsCronTable(m_driverManager.readCronTable()); m_scheduler = new CmsCronScheduler(this, m_table); if (getLog(CmsLog.CHANNEL_INIT).isInfoEnabled()) { getLog(CmsLog.CHANNEL_INIT).info(". OpenCms scheduler : enabled"); } } else { if (getLog(CmsLog.CHANNEL_INIT).isInfoEnabled()) { getLog(CmsLog.CHANNEL_INIT).info(". OpenCms scheduler : disabled"); } } } catch (Exception e) { if (getLog(this).isErrorEnabled()) { getLog(this).error(OpenCmsCore.C_MSG_CRITICAL_ERROR + "5", e); } // any exception here is fatal and will cause a stop in processing throw e; } // initialize the Thread store m_threadStore = new CmsThreadStore(); // initialize the link manager m_linkManager = new CmsLinkManager(); // read flex jsp error page commit property and save in runtime configuration Boolean flexErrorPageCommit = configuration.getBoolean(CmsJspLoader.C_LOADER_ERRORPAGECOMMIT, new Boolean(true)); setRuntimeProperty(CmsJspLoader.C_LOADER_ERRORPAGECOMMIT, flexErrorPageCommit); if (getLog(CmsLog.CHANNEL_INIT).isInfoEnabled()) { getLog(CmsLog.CHANNEL_INIT).info(". JSP errorPage commit : " + (flexErrorPageCommit.booleanValue() ? "enabled" : "disabled")); } // try to initialize the flex cache try { if (getLog(CmsLog.CHANNEL_INIT).isInfoEnabled()) { getLog(CmsLog.CHANNEL_INIT).info(". Flex cache init : starting"); } // pass configuration to flex cache for initialization new CmsFlexCache(configuration); if (getLog(CmsLog.CHANNEL_INIT).isInfoEnabled()) { getLog(CmsLog.CHANNEL_INIT).info(". Flex cache init : finished"); } } catch (Exception e) { if (getLog(CmsLog.CHANNEL_INIT).isWarnEnabled()) { getLog(CmsLog.CHANNEL_INIT).warn(". Flex cache init : non-critical error " + e.toString()); } } // initialize the loaders try { if (getLog(CmsLog.CHANNEL_INIT).isInfoEnabled()) { getLog(CmsLog.CHANNEL_INIT).info(". ResourceLoader init : starting"); } m_loaderManager = new CmsLoaderManager(configuration); if (getLog(CmsLog.CHANNEL_INIT).isInfoEnabled()) { getLog(CmsLog.CHANNEL_INIT).info(". ResourceLoader init : finished"); } } catch (Exception e) { if (getLog(CmsLog.CHANNEL_INIT).isWarnEnabled()) { getLog(CmsLog.CHANNEL_INIT).warn(". ResourceLoader init : non-critical error " + e.toString()); } } // try to initialize directory translations try { boolean translationEnabled = configuration.getBoolean("directory.translation.enabled", false); if (getLog(CmsLog.CHANNEL_INIT).isInfoEnabled()) { getLog(CmsLog.CHANNEL_INIT).info(". Directory translation: " + (translationEnabled ? "enabled" : "disabled")); } if (translationEnabled) { String[] translations = configuration.getStringArray("directory.translation.rules"); // Directory translation stops after fist match, hence the "false" parameter m_directoryTranslator = new CmsResourceTranslator(translations, false); } } catch (Exception e) { if (getLog(CmsLog.CHANNEL_INIT).isWarnEnabled()) { getLog(CmsLog.CHANNEL_INIT).warn(". Directory translation: non-critical error " + e.toString()); } } // make sure we always have at least an empty array if (m_directoryTranslator == null) { m_directoryTranslator = new CmsResourceTranslator(new String[0], false); } // try to initialize filename translations try { boolean translationEnabled = configuration.getBoolean("filename.translation.enabled", false); if (getLog(CmsLog.CHANNEL_INIT).isInfoEnabled()) { getLog(CmsLog.CHANNEL_INIT).info(". Filename translation : " + (translationEnabled ? "enabled" : "disabled")); } if (translationEnabled) { String[] translations = configuration.getStringArray("filename.translation.rules"); // Filename translations applies all rules, hence the true patameters m_fileTranslator = new CmsResourceTranslator(translations, true); } } catch (Exception e) { if (getLog(CmsLog.CHANNEL_INIT).isWarnEnabled()) { getLog(CmsLog.CHANNEL_INIT).warn(". Filename translation : non-critical error " + e.toString()); } } // make sure we always have at last an emtpy array if (m_fileTranslator == null) { m_fileTranslator = new CmsResourceTranslator(new String[0], false); } m_defaultFilenames = null; // try to initialize default directory file names (e.g. index.html) try { m_defaultFilenames = configuration.getStringArray("directory.default.files"); for (int i = 0; i < m_defaultFilenames.length; i++) { // remove possible white space m_defaultFilenames[i] = m_defaultFilenames[i].trim(); if (getLog(CmsLog.CHANNEL_INIT).isInfoEnabled()) { getLog(CmsLog.CHANNEL_INIT).info(". Default file : " + (i + 1) + " - " + m_defaultFilenames[i]); } } } catch (Exception e) { if (getLog(CmsLog.CHANNEL_INIT).isWarnEnabled()) { getLog(CmsLog.CHANNEL_INIT).warn(". Default file : non-critical error " + e.toString()); } } // make sure we always have at last an emtpy array if (m_defaultFilenames == null) { m_defaultFilenames = new String[0]; } // read the immutable import resources String[] immuResources = configuration.getStringArray("import.immutable.resources"); if (immuResources == null) { immuResources = new String[0]; } List immutableResourcesOri = java.util.Arrays.asList(immuResources); ArrayList immutableResources = new ArrayList(); for (int i = 0; i < immutableResourcesOri.size(); i++) { // remove possible white space String path = ((String)immutableResourcesOri.get(i)).trim(); if (path != null && !"".equals(path)) { immutableResources.add(path); if (getLog(CmsLog.CHANNEL_INIT).isInfoEnabled()) { getLog(CmsLog.CHANNEL_INIT).info(". Immutable resource : " + (i + 1) + " - " + path); } } } if (getLog(CmsLog.CHANNEL_INIT).isInfoEnabled()) { getLog(CmsLog.CHANNEL_INIT).info(". Immutable resources : " + ((immutableResources.size() > 0) ? "enabled" : "disabled")); } setRuntimeProperty("import.immutable.resources", immutableResources); // read the conversion setting // TODO: check how to set this String convertToXmlPage = configuration.getString("import.convert.xmlpage"); setRuntimeProperty("import.convert.xmlpage", convertToXmlPage); // read the default user settings try { m_userDefaultLanguage = configuration.getString("workplace.user.default.language", I_CmsWpConstants.C_DEFAULT_LANGUAGE); if (getLog(CmsLog.CHANNEL_INIT).isInfoEnabled()) { getLog(CmsLog.CHANNEL_INIT).info(". User data init : Default language is '" + m_userDefaultLanguage + "'"); } } catch (Exception e) { if (getLog(CmsLog.CHANNEL_INIT).isWarnEnabled()) { getLog(CmsLog.CHANNEL_INIT).warn(". User data init : non-critical error " + e.toString()); } } // read the password validating class m_passwordValidatingClass = configuration.getString("passwordvalidatingclass", "com.opencms.util.PasswordValidtation"); if (getLog(CmsLog.CHANNEL_INIT).isInfoEnabled()) { getLog(CmsLog.CHANNEL_INIT).info(". Password validation : " + m_passwordValidatingClass); } // initialize "resourceinit" registry classes try { List resourceInitClasses = OpenCms.getRegistry().getResourceInit(); Iterator i = resourceInitClasses.iterator(); while (i.hasNext()) { String currentClass = (String)i.next(); try { m_checkFile.add(Class.forName(currentClass).newInstance()); if (getLog(CmsLog.CHANNEL_INIT).isInfoEnabled()) { getLog(CmsLog.CHANNEL_INIT).info(". Resource init class : " + currentClass + " instanciated"); } } catch (Exception e1) { if (getLog(CmsLog.CHANNEL_INIT).isWarnEnabled()) { getLog(CmsLog.CHANNEL_INIT).warn(". Resource init class : non-critical error " + e1.toString()); } } } } catch (Exception e2) { if (getLog(CmsLog.CHANNEL_INIT).isWarnEnabled()) { getLog(CmsLog.CHANNEL_INIT).warn(". Resource init class : non-critical error " + e2.toString()); } } // read old (proprietary XML-style) locale backward compatibily support flag Boolean supportOldLocales = configuration.getBoolean("compatibility.support.oldlocales", new Boolean(false)); setRuntimeProperty("compatibility.support.oldlocales", supportOldLocales); if (getLog(CmsLog.CHANNEL_INIT).isInfoEnabled()) { getLog(CmsLog.CHANNEL_INIT).info(". Old locale support : " + (supportOldLocales.booleanValue() ? "enabled" : "disabled")); } // convert import files from 4.x versions old webapp URL String webappUrl = configuration.getString("compatibility.support.import.old.webappurl", null); if (webappUrl != null) { setRuntimeProperty("compatibility.support.import.old.webappurl", webappUrl); } if (getLog(CmsLog.CHANNEL_INIT).isInfoEnabled()) { getLog(CmsLog.CHANNEL_INIT).info(". Old webapp URL : " + ((webappUrl == null) ? "not set!" : webappUrl)); } // unwanted resource properties which are deleted during import String[] propNames = configuration.getStringArray("compatibility.support.import.remove.propertytags"); if (propNames == null) { propNames = new String[0]; } List propertyNamesOri = java.util.Arrays.asList(propNames); ArrayList propertyNames = new ArrayList(); for (int i = 0; i < propertyNamesOri.size(); i++) { // remove possible white space String name = ((String)propertyNamesOri.get(i)).trim(); if (name != null && !"".equals(name)) { propertyNames.add(name); if (getLog(CmsLog.CHANNEL_INIT).isInfoEnabled()) { getLog(CmsLog.CHANNEL_INIT).info(". Clear import property: " + (i + 1) + " - " + name); } } } if (getLog(CmsLog.CHANNEL_INIT).isInfoEnabled()) { getLog(CmsLog.CHANNEL_INIT).info(". Remove properties : " + ((propertyNames.size() > 0) ? "enabled" : "disabled")); } setRuntimeProperty("compatibility.support.import.remove.propertytags", propertyNames); // old web application names (for editor macro replacement) String[] appNames = configuration.getStringArray("compatibility.support.webAppNames"); if (appNames == null) { appNames = new String[0]; } List webAppNamesOri = java.util.Arrays.asList(appNames); ArrayList webAppNames = new ArrayList(); for (int i = 0; i < webAppNamesOri.size(); i++) { // remove possible white space String name = ((String)webAppNamesOri.get(i)).trim(); if (name != null && !"".equals(name)) { webAppNames.add(name); if (getLog(CmsLog.CHANNEL_INIT).isInfoEnabled()) { getLog(CmsLog.CHANNEL_INIT).info(". Old context path : " + (i + 1) + " - " + name); } } } if (getLog(CmsLog.CHANNEL_INIT).isInfoEnabled()) { getLog(CmsLog.CHANNEL_INIT).info(". Old context support : " + ((webAppNames.size() > 0) ? 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IBoard[] sheetBoards = new Board[mapSettings.getMapWidth() * mapSettings.getMapHeight()]; | IBoard[] sheetBoards = new IBoard[mapSettings.getMapWidth() * mapSettings.getMapHeight()]; | public void applyBoardSettings() { mapSettings.replaceBoardWithRandom(MapSettings.BOARD_RANDOM); mapSettings.replaceBoardWithRandom(MapSettings.BOARD_SURPRISE); IBoard[] sheetBoards = new Board[mapSettings.getMapWidth() * mapSettings.getMapHeight()]; for (int i = 0; i < mapSettings.getMapWidth() * mapSettings.getMapHeight(); i++) { sheetBoards[i] = new Board(); String name = (String)mapSettings.getBoardsSelectedVector().elementAt(i); boolean isRotated = false; if ( name.startsWith( Board.BOARD_REQUEST_ROTATION ) ) { isRotated = true; name = name.substring( Board.BOARD_REQUEST_ROTATION.length() ); } if (name.startsWith(MapSettings.BOARD_GENERATED)) { sheetBoards[i] = BoardUtilities.generateRandom(mapSettings); } else { sheetBoards[i].load( name + ".board"); BoardUtilities.flip(sheetBoards[i], isRotated, isRotated ); } } IBoard newBoard = BoardUtilities.combine(mapSettings.getBoardWidth(), mapSettings.getBoardHeight(), mapSettings.getMapWidth(), mapSettings.getMapHeight(), sheetBoards); game.setBoard(newBoard); } | 3464 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3464/db64c0778bbea1399999fd25b589d242f8842761/Server.java/clean/megamek/src/megamek/server/Server.java | [
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} | } | public void cancel() { dispose(); } | 8690 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8690/50dba43c034792706c94f0d701351f497e2ce540/ToolBarOptionPane.java/buggy/org/gjt/sp/jedit/options/ToolBarOptionPane.java | [
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protected ActionForward saveAction(ActionErrors validateErrors) { | protected ActionForward saveAction(ActionErrors validateErrors) throws B3pCommonsException { | protected ActionForward saveAction(ActionErrors validateErrors) { // validatie if (reduceMainErrors(validateErrors)) { if (log.isInfoEnabled()) log.info("Validation error!"); errors.add(MAIN_MESSAGE, new ActionError("warning.invoerenrecord.savewitherrors")); newAction = SAVE_ACTION; } else { try { // Het hoofdobject wordt alleen aangemaakt, indien // in het form een merker is aangebracht die dit aangeeft. if (theObject == null && Integer.toString(TEMPNEW_ID).equals(getMainID())) { theObject = getNewObject(); subObjects = new ArrayList(); } if (theObject!=null) { populateObject(); syncID(); if (log.isDebugEnabled()) log.debug(" Populating database object from form bean"); } } catch (Exception dbe) { if (log.isErrorEnabled()) log.error(" Database error creating object: ", dbe); errors.add(MAIN_MESSAGE, new ActionError("error.database", dbe.getMessage())); return (mapping.findForward("failure")); } newAction = EDIT_ACTION; if (directSave) errors.add(MAIN_MESSAGE, new ActionError("warning.invoerenrecord.savedone")); } return null; } | 55972 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55972/ddbd45279c6bec659a2e4ed9d4a3c6632023a0b0/EditBaseBean.java/buggy/src/nl/b3p/commons/services/EditBaseBean.java | [
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trans.create(cacheObj.idObj.longValue(), cacheObj.sobj, cacheObj.name); | trans.create(cacheObj.id.idObj, cacheObj.sobj, cacheObj.name); | public void commit() { synchronized (this) { synchronized (updateSet) { for (Entry cacheObj : updateSet) { if (cacheObj.updateMode == UPDATE_DESTROY) { trans.destroy(cacheObj.idObj.longValue()); } else if (cacheObj.updateMode == UPDATE_CREATE) { trans.create(cacheObj.idObj.longValue(), cacheObj.sobj, cacheObj.name); } } updateSet.clear(); cstore.commit(this); // finish my transaction } trans.commit(); } } | 55380 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55380/3bccf9cdf51f7f25da563704ae1d5bcb0ce035a9/CachingObjectStoreTransaction.java/clean/src/com/sun/gi/objectstore/impl/CachingObjectStoreTransaction.java | [
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this.temporary = temporary; | this.temporary = false; | public FocusEvent (Component source, int id, boolean temporary) { super (source, id); this.temporary = temporary; } | 25352 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/25352/3d75d43c65cad1c53dd9b0321ff7e166c00d1d32/FocusEvent.java/buggy/libjava/java/awt/event/FocusEvent.java | [
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return "FUNCTION_" + functionNumber + "_NAME"; | return "FUNCTION" + Constants.DELIMITER + functionNumber + Constants.DELIMITER + "NAME"; | private String makeFunctionName(int functionNumber) { return "FUNCTION_" + functionNumber + "_NAME"; } | 5235 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5235/ae9fd5cf142d2d909a7fdabe362d27cd679b9e27/Fixtures.java/clean/signet/test/edu/internet2/middleware/signet/test/Fixtures.java | [
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} else { if (getDestroyedCriticals(CriticalSlot.TYPE_SYSTEM, Mech.ACTUATOR_UPPER_LEG, loc) > 0) { roll.addModifier(1, getLocationName(loc) + " Upper Leg Actuator destroyed"); } if (getDestroyedCriticals(CriticalSlot.TYPE_SYSTEM, Mech.ACTUATOR_LOWER_LEG, loc) > 0) { roll.addModifier(1, getLocationName(loc) + " Lower Leg Actuator destroyed"); } if (getDestroyedCriticals(CriticalSlot.TYPE_SYSTEM, Mech.ACTUATOR_FOOT, loc) > 0) { roll.addModifier(1, getLocationName(loc) + " Foot Actuator destroyed"); } | if (!game.getOptions().booleanOption("maxtech_leg_damage")) continue; } if (getDestroyedCriticals(CriticalSlot.TYPE_SYSTEM, Mech.ACTUATOR_UPPER_LEG, loc) > 0) { roll.addModifier(1, getLocationName(loc) + " Upper Leg Actuator destroyed"); } if (getDestroyedCriticals(CriticalSlot.TYPE_SYSTEM, Mech.ACTUATOR_LOWER_LEG, loc) > 0) { roll.addModifier(1, getLocationName(loc) + " Lower Leg Actuator destroyed"); } if (getDestroyedCriticals(CriticalSlot.TYPE_SYSTEM, Mech.ACTUATOR_FOOT, loc) > 0) { roll.addModifier(1, getLocationName(loc) + " Foot Actuator destroyed"); | public PilotingRollData addEntityBonuses(PilotingRollData roll) { int[] locsToCheck = new int[2]; locsToCheck[0] = Mech.LOC_RLEG; locsToCheck[1] = Mech.LOC_LLEG; for ( int i = 0; i < locsToCheck.length; i++ ) { int loc = locsToCheck[i]; if (isLocationDestroyed(loc)) { roll.addModifier(5, getLocationName(loc) + " destroyed"); } else { // check for damaged hip actuators if (getDestroyedCriticals(CriticalSlot.TYPE_SYSTEM, Mech.ACTUATOR_HIP, loc) > 0) { roll.addModifier(2, getLocationName(loc) + " Hip Actuator destroyed"); } else { // upper leg actuators? if (getDestroyedCriticals(CriticalSlot.TYPE_SYSTEM, Mech.ACTUATOR_UPPER_LEG, loc) > 0) { roll.addModifier(1, getLocationName(loc) + " Upper Leg Actuator destroyed"); } // lower leg actuators? if (getDestroyedCriticals(CriticalSlot.TYPE_SYSTEM, Mech.ACTUATOR_LOWER_LEG, loc) > 0) { roll.addModifier(1, getLocationName(loc) + " Lower Leg Actuator destroyed"); } // foot actuators? if (getDestroyedCriticals(CriticalSlot.TYPE_SYSTEM, Mech.ACTUATOR_FOOT, loc) > 0) { roll.addModifier(1, getLocationName(loc) + " Foot Actuator destroyed"); } } } } return super.addEntityBonuses(roll); } | 4135 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4135/959c1f959c2a847255f48386e0624dc23536e3d1/BipedMech.java/clean/megamek/src/megamek/common/BipedMech.java | [
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ClusteredQueue queue3 = new ClusteredQueue(im.getId(), ms, pm, true, false, 2000, 100, 100, (QueuedExecutor)pool.get(), null); | ClusteredQueue queue3 = new ClusteredQueue(im.getId(), ms, pm, true, false, 2000, 100, 100, (QueuedExecutor)pool.get()); | public final void testClusteredBindUnbind() throws Throwable { ClusteredPostOffice office1 = null; ClusteredPostOffice office2 = null; ClusteredPostOffice office3 = null; try { //Start one office office1 = createClusteredPostOffice("node1", "testgroup"); //Add a couple of bindings ClusteredQueue queue1 = new ClusteredQueue(im.getId(), ms, pm, true, false, 2000, 100, 100, (QueuedExecutor)pool.get(), null); Binding binding1 = office1.bindClusteredQueue("sub1", "topic1", queue1); ClusteredQueue queue2 = new ClusteredQueue(im.getId(), ms, pm, true, false, 2000, 100, 100, (QueuedExecutor)pool.get(), null); Binding binding2 = office1.bindClusteredQueue("sub2", "topic1", queue2); //Start another office - make sure it picks up the bindings from the first node office2 = createClusteredPostOffice("node2", "testgroup"); List bindings = office2.listBindingsForCondition("topic1"); assertNotNull(bindings); assertEquals(2, bindings.size()); assertEquivalent(binding1, (Binding)bindings.get(0)); assertEquivalent(binding2, (Binding)bindings.get(1)); //Add another binding on node 2 ClusteredQueue queue3 = new ClusteredQueue(im.getId(), ms, pm, true, false, 2000, 100, 100, (QueuedExecutor)pool.get(), null); Binding binding3 = office2.bindClusteredQueue("sub3", "topic1", queue3); //Make sure both nodes pick it up bindings = office1.listBindingsForCondition("topic1"); assertNotNull(bindings); assertEquals(3, bindings.size()); assertEquivalent(binding1, (Binding)bindings.get(0)); assertEquivalent(binding2, (Binding)bindings.get(1)); assertEquivalent(binding3, (Binding)bindings.get(2)); bindings = office2.listBindingsForCondition("topic1"); assertNotNull(bindings); assertEquals(3, bindings.size()); assertEquivalent(binding1, (Binding)bindings.get(0)); assertEquivalent(binding2, (Binding)bindings.get(1)); assertEquivalent(binding3, (Binding)bindings.get(2)); //Add another binding on node 1 ClusteredQueue queue4 = new ClusteredQueue(im.getId(), ms, pm, true, false, 2000, 100, 100, (QueuedExecutor)pool.get(), null); Binding binding4 = office2.bindClusteredQueue("sub4", "topic1", queue4); // Make sure both nodes pick it up bindings = office1.listBindingsForCondition("topic1"); assertNotNull(bindings); assertEquals(4, bindings.size()); assertEquivalent(binding1, (Binding)bindings.get(0)); assertEquivalent(binding2, (Binding)bindings.get(1)); assertEquivalent(binding3, (Binding)bindings.get(2)); assertEquivalent(binding4, (Binding)bindings.get(3)); bindings = office2.listBindingsForCondition("topic1"); assertNotNull(bindings); assertEquals(4, bindings.size()); assertEquivalent(binding1, (Binding)bindings.get(0)); assertEquivalent(binding2, (Binding)bindings.get(1)); assertEquivalent(binding3, (Binding)bindings.get(2)); assertEquivalent(binding4, (Binding)bindings.get(3)); //Unbind binding 1 and binding 2 office1.unbindClusteredQueue("sub1"); office1.unbindClusteredQueue("sub2"); //Make sure bindings are not longer available on either node bindings = office1.listBindingsForCondition("topic1"); assertNotNull(bindings); assertEquals(2, bindings.size()); assertEquivalent(binding3, (Binding)bindings.get(0)); assertEquivalent(binding4, (Binding)bindings.get(1)); bindings = office2.listBindingsForCondition("topic1"); assertNotNull(bindings); assertEquals(2, bindings.size()); assertEquivalent(binding3, (Binding)bindings.get(0)); assertEquivalent(binding4, (Binding)bindings.get(1)); //Add a third office office3 = createClusteredPostOffice("node3", "testgroup"); //Maks sure it picks up the bindings bindings = office3.listBindingsForCondition("topic1"); assertNotNull(bindings); assertEquals(2, bindings.size()); assertEquivalent(binding3, (Binding)bindings.get(0)); assertEquivalent(binding4, (Binding)bindings.get(1)); //Add another binding on node 3 ClusteredQueue queue5 = new ClusteredQueue(im.getId(), ms, pm, true, false, 2000, 100, 100, (QueuedExecutor)pool.get(), null); Binding binding5 = office3.bindClusteredQueue("sub5", "topic1", queue5); // Make sure all nodes pick it up bindings = office1.listBindingsForCondition("topic1"); assertNotNull(bindings); assertEquals(3, bindings.size()); assertEquivalent(binding3, (Binding)bindings.get(0)); assertEquivalent(binding4, (Binding)bindings.get(1)); assertEquivalent(binding5, (Binding)bindings.get(2)); bindings = office2.listBindingsForCondition("topic1"); assertNotNull(bindings); assertEquals(3, bindings.size()); assertEquivalent(binding3, (Binding)bindings.get(0)); assertEquivalent(binding4, (Binding)bindings.get(1)); assertEquivalent(binding5, (Binding)bindings.get(2)); bindings = office3.listBindingsForCondition("topic1"); assertNotNull(bindings); assertEquals(3, bindings.size()); assertEquivalent(binding3, (Binding)bindings.get(0)); assertEquivalent(binding4, (Binding)bindings.get(1)); assertEquivalent(binding5, (Binding)bindings.get(2)); //Add a durable and a non durable binding on node 1 ClusteredQueue queue6 = new ClusteredQueue(im.getId(), ms, pm, true, true, 2000, 100, 100, (QueuedExecutor)pool.get(), null); Binding binding6 = office1.bindClusteredQueue("sub6", "topic1", queue6); ClusteredQueue queue7 = new ClusteredQueue(im.getId(), ms, pm, true, false, 2000, 100, 100, (QueuedExecutor)pool.get(), null); Binding binding7 = office1.bindClusteredQueue("sub7", "topic1", queue7); // Make sure all nodes pick them up bindings = office1.listBindingsForCondition("topic1"); assertNotNull(bindings); assertEquals(5, bindings.size()); assertEquivalent(binding3, (Binding)bindings.get(0)); assertEquivalent(binding4, (Binding)bindings.get(1)); assertEquivalent(binding5, (Binding)bindings.get(2)); assertEquivalent(binding6, (Binding)bindings.get(3)); assertEquivalent(binding7, (Binding)bindings.get(4)); bindings = office2.listBindingsForCondition("topic1"); assertNotNull(bindings); assertEquals(5, bindings.size()); assertEquivalent(binding3, (Binding)bindings.get(0)); assertEquivalent(binding4, (Binding)bindings.get(1)); assertEquivalent(binding5, (Binding)bindings.get(2)); assertEquivalent(binding6, (Binding)bindings.get(3)); assertEquivalent(binding7, (Binding)bindings.get(4)); bindings = office3.listBindingsForCondition("topic1"); assertNotNull(bindings); assertEquals(5, bindings.size()); assertEquivalent(binding3, (Binding)bindings.get(0)); assertEquivalent(binding4, (Binding)bindings.get(1)); assertEquivalent(binding5, (Binding)bindings.get(2)); assertEquivalent(binding6, (Binding)bindings.get(3)); assertEquivalent(binding7, (Binding)bindings.get(4)); //Stop office 1 office1.stop(); //Need to sleep since it may take some time for the view changed request to reach the //members which causes the bindings to be removed Thread.sleep(1000); //All it's non durable bindings should be removed from the other nodes //Durable bindings should remain bindings = office2.listBindingsForCondition("topic1"); assertNotNull(bindings); assertEquals(4, bindings.size()); assertEquivalent(binding3, (Binding)bindings.get(0)); assertEquivalent(binding4, (Binding)bindings.get(1)); assertEquivalent(binding5, (Binding)bindings.get(2)); assertEquivalent(binding6, (Binding)bindings.get(3)); bindings = office3.listBindingsForCondition("topic1"); assertNotNull(bindings); assertEquals(4, bindings.size()); assertEquivalent(binding3, (Binding)bindings.get(0)); assertEquivalent(binding4, (Binding)bindings.get(1)); assertEquivalent(binding5, (Binding)bindings.get(2)); assertEquivalent(binding6, (Binding)bindings.get(3)); //Stop office 2 office2.stop(); bindings = office3.listBindingsForCondition("topic1"); assertNotNull(bindings); assertEquals(2, bindings.size()); assertEquivalent(binding5, (Binding)bindings.get(0)); assertEquivalent(binding6, (Binding)bindings.get(1)); //Restart office 1 and office 2 office1 = createClusteredPostOffice("node1", "testgroup"); office2 = createClusteredPostOffice("node2", "testgroup"); bindings = office1.listBindingsForCondition("topic1"); assertNotNull(bindings); assertEquals(2, bindings.size()); assertEquivalent(binding5, (Binding)bindings.get(0)); assertEquivalent(binding6, (Binding)bindings.get(1)); bindings = office2.listBindingsForCondition("topic1"); assertNotNull(bindings); assertEquals(2, bindings.size()); assertEquivalent(binding5, (Binding)bindings.get(0)); assertEquivalent(binding6, (Binding)bindings.get(1)); bindings = office3.listBindingsForCondition("topic1"); assertNotNull(bindings); assertEquals(2, bindings.size()); assertEquivalent(binding5, (Binding)bindings.get(0)); assertEquivalent(binding6, (Binding)bindings.get(1)); //Stop all offices office1.stop(); office2.stop(); office3.stop(); //Start them all office1 = createClusteredPostOffice("node1", "testgroup"); office2 = createClusteredPostOffice("node2", "testgroup"); office3 = createClusteredPostOffice("node3", "testgroup"); //Only the durable queue should survive bindings = office1.listBindingsForCondition("topic1"); assertNotNull(bindings); assertEquals(1, bindings.size()); assertEquivalent(binding6, (Binding)bindings.get(0)); bindings = office2.listBindingsForCondition("topic1"); assertNotNull(bindings); assertEquals(1, bindings.size()); assertEquivalent(binding6, (Binding)bindings.get(0)); bindings = office3.listBindingsForCondition("topic1"); assertNotNull(bindings); assertEquals(1, bindings.size()); assertEquivalent(binding6, (Binding)bindings.get(0)); } finally { if (office1 != null) { office1.unbindClusteredQueue("sub6"); office1.stop(); } if (office2 != null) { office2.stop(); } if (office3 != null) { office2.stop(); } } } | 3806 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3806/0a87b6fa611eb79aca9f82a8a7d739b9af40e965/ClusteredPostOfficeTest.java/buggy/tests/src/org/jboss/test/messaging/core/plugin/ClusteredPostOfficeTest.java | [
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String fieldName = getUtf8String(name_index); String fieldSignature = getUtf8String(descriptor_index); | String name = getUtf8String(name_index); String signature = getUtf8String(descriptor_index); if (attributes_count < 0) { throw new InvalidClassFileFormatException(expectedClassDescriptor, codeBaseEntry); } for (int i = 0; i < attributes_count; i++) { readAttribute(); } | private<E> E readFieldOrMethod( ClassDescriptor thisClassDescriptor, FieldOrMethodDescriptorCreator<E> creator) throws IOException, InvalidClassFileFormatException { int access_flags = in.readUnsignedShort(); int name_index = in.readUnsignedShort(); int descriptor_index = in.readUnsignedShort(); int attributes_count = in.readUnsignedShort(); String fieldName = getUtf8String(name_index); String fieldSignature = getUtf8String(descriptor_index); return creator.create( thisClassDescriptor.getClassName(), fieldName, fieldSignature, access_flags); } | 10715 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/10715/236edb786475cf9c2eeda6dcb7bb09e6d99c3890/ClassParser.java/buggy/findbugs/src/java/edu/umd/cs/findbugs/classfile/engine/ClassParser.java | [
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IProject project = (IProject)owner; | public String getOutputPrefix(String outputExtension) { IProject project = (IProject)owner; // Treat null extensions as empty string String ext = outputExtension == null ? new String() : outputExtension; // Get all the tools for the current config String flags = new String(); IConfiguration config = getDefaultConfiguration(getDefaultTarget()); ITool[] tools = config.getFilteredTools(project); for (int index = 0; index < tools.length; index++) { ITool tool = tools[index]; if (tool.producesFileType(ext)) { flags = tool.getOutputPrefix(); } } return flags; } | 54911 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54911/5c9fe1859cabfbd4618959eb71f6e54c1222ce0d/ManagedBuildInfo.java/clean/build/org.eclipse.cdt.managedbuilder.core/src/org/eclipse/cdt/managedbuilder/internal/core/ManagedBuildInfo.java | [
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taxonElement.addContent(createChild("id", taxonSet.getId())); | taxonElement.addContent(createChild("id", taxonSet.getTaxon(j).getId())); | public Document create(boolean includeData, boolean guessDates) { Element root = new Element("beauti"); root.setAttribute("version", version); Element dataElement = new Element("data"); //dataElement.addContent(createChild("fileNameStem", fileNameStem)); dataElement.addContent(createChild("datesUnits", datesUnits)); dataElement.addContent(createChild("datesDirection", datesDirection)); dataElement.addContent(createChild("translation", translation)); dataElement.addContent(createChild("userTree", userTree)); if (includeData && originalAlignment != null) { Element alignmentElement = new Element("alignment"); alignmentElement.addContent(createChild("dataType", originalAlignment.getDataType().getType())); for (int i = 0; i < originalAlignment.getTaxonCount(); i++) { Element taxonElement = new Element("taxon"); taxonElement.addContent(createChild("id", originalAlignment.getTaxonId(i))); dr.evolution.util.Date date = originalAlignment.getTaxon(i).getDate(); if (date != null) { taxonElement.addContent(createChild("date", date.getTimeValue())); } Sequence sequence = originalAlignment.getSequence(i); taxonElement.addContent(createChild("sequence", sequence.getSequenceString())); alignmentElement.addContent(taxonElement); } dataElement.addContent(alignmentElement); } dataElement.addContent(createChild("guessDates", guessDates)); dataElement.addContent(createChild("guessDateFromOrder", guessDateFromOrder)); dataElement.addContent(createChild("fromLast", fromLast)); dataElement.addContent(createChild("order", order)); dataElement.addContent(createChild("prefix", prefix)); dataElement.addContent(createChild("offset", offset)); dataElement.addContent(createChild("unlessLessThan", unlessLessThan)); dataElement.addContent(createChild("offset2", offset2)); root.addContent(dataElement); Element taxaElement = new Element("taxa"); for (int i = 0; i < taxonSets.size(); i++) { Taxa taxonSet = (Taxa)taxonSets.get(i); Element taxonSetElement = new Element("taxonSet"); taxonSetElement.addContent(createChild("id", taxonSet.getId())); for (int j = 0; j < taxonSet.getTaxonCount(); j++) { Element taxonElement = new Element("taxon"); taxonElement.addContent(createChild("id", taxonSet.getId())); taxonSetElement.addContent(taxonElement); } taxaElement.addContent(taxonSetElement); } root.addContent(taxaElement); Element modelElement = new Element("model"); modelElement.addContent(createChild("nucSubstitutionModel", nucSubstitutionModel)); modelElement.addContent(createChild("aaSubstitutionModel", aaSubstitutionModel)); modelElement.addContent(createChild("gammaHetero", gammaHetero)); modelElement.addContent(createChild("gammaCategories", gammaCategories)); modelElement.addContent(createChild("invarHetero", invarHetero)); modelElement.addContent(createChild("codonHetero", codonHetero)); modelElement.addContent(createChild("maximumTipHeight", maximumTipHeight)); modelElement.addContent(createChild("hasSetFixedSubstitutionRate", hasSetFixedSubstitutionRate)); modelElement.addContent(createChild("meanSubstitutionRate", meanSubstitutionRate)); modelElement.addContent(createChild("fixedSubstitutionRate", fixedSubstitutionRate)); modelElement.addContent(createChild("unlinkedSubstitutionModel", unlinkedSubstitutionModel)); modelElement.addContent(createChild("unlinkedHeterogeneityModel", unlinkedHeterogeneityModel)); modelElement.addContent(createChild("unlinkedFrequencyModel", unlinkedFrequencyModel)); modelElement.addContent(createChild("clockModel", clockModel)); modelElement.addContent(createChild("nodeHeightPrior", nodeHeightPrior)); modelElement.addContent(createChild("parameterization", parameterization)); modelElement.addContent(createChild("skylineGroupCount", skylineGroupCount)); modelElement.addContent(createChild("skylineModel", skylineModel)); modelElement.addContent(createChild("fixedTree", fixedTree)); root.addContent(modelElement); Element priorsElement = new Element("priors"); Iterator iter = parameters.keySet().iterator(); while (iter.hasNext()) { String name = (String)iter.next(); 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e.addContent(createChild("gammaOffset", parameter.gammaOffset)); priorsElement.addContent(e); } root.addContent(priorsElement); Element operatorsElement = new Element("operators"); operatorsElement.addContent(createChild("autoOptimize", autoOptimize)); iter = operators.keySet().iterator(); while (iter.hasNext()) { String name = (String)iter.next(); Operator operator = (Operator)operators.get(name); Element e = new Element(name); e.addContent(createChild("tuning", operator.tuning)); e.addContent(createChild("weight", (int)operator.weight)); operatorsElement.addContent(e); } root.addContent(operatorsElement); Element mcmcElement = new Element("mcmc"); mcmcElement.addContent(createChild("upgmaStartingTree", upgmaStartingTree)); mcmcElement.addContent(createChild("chainLength", chainLength)); mcmcElement.addContent(createChild("logEvery", logEvery)); mcmcElement.addContent(createChild("echoEvery", echoEvery)); //if (logFileName != null) mcmcElement.addContent(createChild("logFileName", logFileName)); //if (treeFileName != null) mcmcElement.addContent(createChild("treeFileName", treeFileName)); //mcmcElement.addContent(createChild("mapTreeLog", mapTreeLog)); //if (mapTreeFileName != null) mcmcElement.addContent(createChild("mapTreeFileName", mapTreeFileName)); mcmcElement.addContent(createChild("substTreeLog", substTreeLog)); //if (substTreeFileName != null) mcmcElement.addContent(createChild("substTreeFileName", substTreeFileName)); root.addContent(mcmcElement); Document doc = new Document(root); return doc; } | 49053 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49053/28bbaedd52beea14d11baaf051fef98292936bca/BeautiOptions.java/buggy/trunk/src/dr/app/beauti/BeautiOptions.java | [
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public DragTest(TestDragSource dragSource, TestDropLocation dropTarget, AbstractTestLogger log) { this(dragSource, dropTarget, log, ""); | public DragTest(TestDragSource dragSource, TestDropLocation dropTarget, AbstractTestLogger log, String suffix) { super("drag " + dragSource.toString() + " to " + dropTarget.toString() + suffix, log); this.dragSource = dragSource; this.dropTarget = dropTarget; | public DragTest(TestDragSource dragSource, TestDropLocation dropTarget, AbstractTestLogger log) { this(dragSource, dropTarget, log, ""); } | 57470 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57470/5abf6fabfddc9bb4eb33acac1f3b4c05f76ac7b1/DragTest.java/clean/tests/org.eclipse.ui.tests/Eclipse UI Tests/org/eclipse/ui/tests/dnd/DragTest.java | [
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logger.debug("Setting up: " + isotope); | if (debug) logger.debug("Setting up: " + isotope); | private IsotopeFactory() throws IOException, OptionalDataException, ClassNotFoundException { logger = new LoggingTool(this.getClass().getName()); logger.info("Creating new IsotopeFactory"); InputStream ins = null; // ObjIn in = null; String errorMessage = "There was a problem getting org.openscience.cdk." + "config.isotopes.xml as a stream"; try { String configFile = "org/openscience/cdk/config/isotopes.xml"; logger.debug("Getting stream for " + configFile); ins = this.getClass().getClassLoader().getResourceAsStream(configFile); } catch (Exception exc) { logger.error(errorMessage); throw new IOException(errorMessage); } if (ins == null) { logger.error(errorMessage); throw new IOException(errorMessage); } IsotopeReader reader = new IsotopeReader(new InputStreamReader(ins)); //in = new ObjIn(ins, new Config().aliasID(false)); //isotopes = (Vector) in.readObject(); isotopes = reader.readIsotopes(); logger.debug("Found #isotopes in file: " + isotopes.size()); for (int f = 0; f < isotopes.size(); f++) { Isotope isotope = (Isotope)isotopes.elementAt(f); logger.debug("Setting up: " + isotope); setup(isotope); } majorIsotopes = new Hashtable(); } | 45167 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45167/40d7f143548e6f4a78bd2602a9dc4905d9fd1e8f/IsotopeFactory.java/clean/src/org/openscience/cdk/tools/IsotopeFactory.java | [
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sb.append(" (\n\t\t\t"); | sb.append(" (\n\t\t\t\t\t"); | toString() { StringBuffer sb = toStringNoData(); if (host != null) { sb.append(host); sb.append(" "); sb.append(admin); sb.append(" (\n\t\t\t"); sb.append(serial); sb.append("\t; serial\n\t\t\t"); sb.append(refresh); sb.append("\t; refresh\n\t\t\t"); sb.append(retry); sb.append("\t; retry\n\t\t\t"); sb.append(refresh); sb.append("\t; refresh\n\t\t\t"); sb.append(minimum); sb.append(")\t; minimum"); } return sb.toString();} | 4227 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4227/eab19ae1a2d6b028d8d0c3a26d740a5520f4fec6/dnsSOARecord.java/buggy/org/xbill/DNS/dnsSOARecord.java | [
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final String path = readOptionalFromRegistry(menuElement, ATTRIBUTE_PATH); | final String path = readOptional(menuElement, ATTRIBUTE_PATH); final String subpath; if (path == null) { subpath = menuId; } else { subpath = menuId + '/' + path; } | private static final SReference[] readMenusAndGroupsFromRegistry( final IConfigurationElement[] menuElements, final String contributionId, final List warningsToLog, final IMenuService menuService, final Expression visibleWhenExpression) { final int length = menuElements.length; final Collection references = new ArrayList(length); for (int i = 0; i < length; i++) { final IConfigurationElement menuElement = menuElements[i]; // Read the id attribute. final String menuId = readRequiredFromRegistry(menuElement, ATTRIBUTE_ID, warningsToLog, "Menus require an id", contributionId); //$NON-NLS-1$ if (menuId == null) { continue; } // Read the label attribute, and extract the mnemonic. String label = readRequiredFromRegistry(menuElement, ATTRIBUTE_LABEL, warningsToLog, "Menus require a label", menuId); //$NON-NLS-1$ if (label == null) { continue; } final char mnemonic = LegacyActionTools.extractMnemonic(label); label = LegacyActionTools.removeMnemonics(label); // Read the path attribute. final String path = readOptionalFromRegistry(menuElement, ATTRIBUTE_PATH); // TODO Read children. // Define the menu. final SMenu menu = menuService.getMenu(menuId); final LocationElement bar = new SBar(SBar.TYPE_MENU, path); final SLocation location = new SLocation(mnemonic, null, null, bar); final SLocation[] locations = new SLocation[] { location }; menu.define(label, locations, null); final IMenuContribution contribution = menuService.contributeMenu( menu, visibleWhenExpression); menuContributions.add(contribution); references.add(new SReference(SReference.TYPE_MENU, menuId)); } return (SReference[]) references.toArray(new SReference[references .size()]); } | 57470 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57470/539b29bd9f4ed0020b6fce0d726b8d740d87469d/LegacyActionPersistence.java/buggy/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/internal/menus/LegacyActionPersistence.java | [
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ActionMessages messages = new ActionMessages(); | public ActionForward saveSubscription(ActionMapping mapping, ActionForm actionForm, HttpServletRequest request, HttpServletResponse response) throws IOException, ServletException { ActionForward forward = mapping.findForward("planetSubscriptions.page"); try { Roller roller = RollerFactory.getRoller(); PlanetManager planet = roller.getPlanetManager(); PlanetSubscriptionFormEx form = (PlanetSubscriptionFormEx)actionForm; String groupHandle = request.getParameter("groupHandle"); groupHandle = (groupHandle == null) ? form.getGroupHandle() : groupHandle; groupHandle = (groupHandle == null) ? "external" : groupHandle; PlanetGroupData targetGroup = planet.getGroup(groupHandle); if (RollerSession.getRollerSession(request).isGlobalAdminUser()) { PlanetSubscriptionData sub = null; ActionErrors errors = validate(planet, form); if (errors.isEmpty()) { if (form.getId() == null || form.getId().trim().length() == 0) { // User adding new subscription to group. // Does form specify a subscription that already exists? if (form.getFeedUrl() != null) { sub = planet.getSubscription(form.getFeedUrl()); } // If not, then create a new one if (sub == null) { sub = new PlanetSubscriptionData(); } // And add it to the group targetGroup.addSubscription(sub); } else { // User editing an existing subscription within a group sub = planet.getSubscriptionById(form.getId()); form.copyTo(sub, request.getLocale()); } form.setGroupHandle(groupHandle); planet.saveSubscription(sub); planet.saveGroup(targetGroup); roller.commit(); ActionMessages messages = new ActionMessages(); messages.add(null, new ActionMessage("planetSubscription.success.saved")); saveMessages(request, messages); form.doReset(mapping, request); } else { saveErrors(request, errors); } } else { forward = mapping.findForward("access-denied"); } request.setAttribute("model", new SubscriptionsPageModel( targetGroup, request, response, mapping, form)); } catch (RollerException e) { ActionErrors errors = new ActionErrors(); errors.add(null, new ActionError( "planetSubscriptions.error.duringSave",e.getRootCauseMessage())); saveErrors(request, errors); } return forward; } | 46431 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46431/e02f0e78239689cfdf0f401368e913de610f3297/PlanetSubscriptionsAction.java/clean/src/org/roller/presentation/planet/PlanetSubscriptionsAction.java | [
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setBorder(BorderFactory.createEmptyBorder(0, 10, 0, 10)); | public HeaderPanel(PipelineEditorModel model, JPanel buttonPanel) { this.model = model; setBorder(BorderFactory.createEmptyBorder(0, 10, 0, 10)); setLayout(new BorderLayout()); String name = model.getPipelineName(); if (name != null && name.endsWith(".pipeline")) { name = name.substring(0, name.length() - ".pipeline".length()); } JLabel nameLabel = new JLabel("Name:"); nameField = new JTextField(name, 40); JLabel descriptionLabel = new JLabel("Description:"); descriptionField = new JTextField(model .getPipelineDescription(), 40); JComboBox versionComboBox = null; if (name != null) { versionComboBox = new VersionComboBox(model.getLSID(), ChangeViewMessageRequest.SHOW_EDIT_PIPELINE_REQUEST); } CellConstraints cc = new CellConstraints(); JPanel temp = new JPanel(new FormLayout( "right:pref:none, 3dlu, pref, pref", "pref, 3dlu, pref, pref")); temp.add(nameLabel, cc.xy(1, 1)); temp.add(nameField, cc.xy(3, 1)); if (versionComboBox != null) { temp.add(versionComboBox, cc.xy(4, 1)); } temp.add(descriptionLabel, cc.xy(1, 3)); temp.add(descriptionField, cc.xy(3, 3)); StringBuffer rowSpec = new StringBuffer(); for (int i = 0; i < 6; i++) { if (i > 0) { rowSpec.append(", "); } rowSpec.append("pref, "); rowSpec.append("3dlu"); } JPanel detailsPanel = new JPanel(new FormLayout( "right:pref:none, 3dlu, left:pref", rowSpec.toString())); detailsPanel.setBorder(BorderFactory.createLineBorder(Color.BLACK)); JLabel authorLabel = new JLabel("Author"); authorField = new JTextField(model.getAuthor(), 40); detailsPanel.add(authorLabel, cc.xy(1, 1)); detailsPanel.add(authorField, cc.xy(3, 1)); JLabel ownerLabel = new JLabel("Owner"); ownerField = new JTextField(model.getOwner(), 40); detailsPanel.add(ownerLabel, cc.xy(1, 3)); detailsPanel.add(ownerField, cc.xy(3, 3)); JLabel privacyLabel = new JLabel("Privacy"); privacyComboBox = new JComboBox(new String[] { "Public", "Private" }); if (model.getPrivacy() == GPConstants.ACCESS_PRIVATE) { privacyComboBox.setSelectedIndex(1); } detailsPanel.add(privacyLabel, cc.xy(1, 5)); detailsPanel.add(privacyComboBox, cc.xy(3, 5)); JLabel versionLabel = new JLabel("Version comment:"); versionField = new JTextField(model.getVersionComment(), 40); detailsPanel.add(versionLabel, cc.xy(1, 7)); detailsPanel.add(versionField, cc.xy(3, 7)); JLabel documentationLabel = new JLabel("Documentation"); JComboBox existingDocComboBox = new JComboBox(); detailsPanel.add(documentationLabel, cc.xy(1, 9)); detailsPanel.add(existingDocComboBox, cc.xy(3, 9)); if(name!=null) { JLabel lsidLabel = new JLabel("LSID:"); JLabel lsidField = new JLabel(model.getLSID()); detailsPanel.add(lsidLabel, cc.xy(1, 11)); detailsPanel.add(lsidField, cc.xy(3, 11)); } TogglePanel detailsToggle = new TogglePanel("Details", detailsPanel); JPanel bottom = new JPanel(new BorderLayout()); bottom.add(detailsToggle, BorderLayout.NORTH); bottom.add(buttonPanel, BorderLayout.SOUTH); add(temp, BorderLayout.CENTER); add(bottom, BorderLayout.SOUTH); } | 57344 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57344/ea4765c7c1cfe7d85e31b7fb31adf4858028b221/PipelineComponent.java/buggy/clients/JavaGE/src/org/genepattern/gpge/ui/tasks/pipeline/PipelineComponent.java | [
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setExperimenters( new HashSet(grp.collectFromExperimenterLinks( block ))); | setExperimenters( new HashSet(grp.eachLinkedExperimenter( block ))); | public void copy(IObject model, ModelMapper mapper) { if (model instanceof ExperimenterGroup) { ExperimenterGroup grp = (ExperimenterGroup) model; super.copy(model,mapper); // Details if (grp.getDetails() != null){ this.setOwner((ExperimenterData) mapper.findTarget(grp.getDetails().getOwner())); } // Fields this.setName(grp.getName()); // Collections MapperBlock block = new MapperBlock( mapper ); setExperimenters( new HashSet(grp.collectFromExperimenterLinks( block ))); } else { throw new IllegalArgumentException( "GroupData can only copy from Group, not "+ model.getClass().getName()); // TODO all errors like this. } } | 13273 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/13273/7b5c704279f82fa929138305f70f2f5e6b462c69/GroupData.java/buggy/components/shoola-adapter/src/pojos/GroupData.java | [
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return getStyleSheet().getViewAttributes(this); | if (attributes == null) attributes = getStyleSheet().getViewAttributes(this); return attributes; | public AttributeSet getAttributes() { return getStyleSheet().getViewAttributes(this); } | 50763 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50763/a3e083d3100ebabbd539297b5cb2118701b9674e/BlockView.java/buggy/core/src/classpath/javax/javax/swing/text/html/BlockView.java | [
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bug.setSelectedOperation(o); | taskData.setSelectedOperation(o); | public void widgetSelected(SelectionEvent e) { Button selected = null; for (int i = 0; i < radios.length; i++) { if (radios[i].getSelection()) selected = radios[i]; } // determine the operation to do to the bug for (int i = 0; i < radios.length; i++) { if (radios[i] != e.widget && radios[i] != selected) { radios[i].setSelection(false); } if (e.widget == radios[i]) { Operation o = bug.getOperation(radios[i].getText()); bug.setSelectedOperation(o); ExistingBugEditor.this.changeDirtyStatus(true); } else if (e.widget == radioOptions[i]) { Operation o = bug.getOperation(radios[i].getText()); o.setOptionSelection(((CCombo) radioOptions[i]).getItem(((CCombo) radioOptions[i]) .getSelectionIndex())); if (bug.getSelectedOperation() != null) bug.getSelectedOperation().setChecked(false); o.setChecked(true); bug.setSelectedOperation(o); radios[i].setSelection(true); if (selected != null && selected != radios[i]) { selected.setSelection(false); } ExistingBugEditor.this.changeDirtyStatus(true); } } validateInput(); } | 51151 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51151/11ba991a7c176a0ea4c187e5f674932dc37851d1/ExistingBugEditor.java/clean/org.eclipse.mylyn.bugzilla.ui/src/org/eclipse/mylyn/internal/bugzilla/ui/editor/ExistingBugEditor.java | [
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if(core.getConfig().getPluginNames().size() == 0) { | if(this.core.getConfig().getPluginNames().size() == 0) { | public boolean loadPlugins() { plugins = new LinkedHashMap(); Vector pluginNames; if(core.getConfig().getPluginNames().size() == 0) { /* Then we load the config with the default plugins */ for(int i = 0 ; i < defaultPlugins.length ; i++) { core.getConfig().addPlugin(defaultPlugins[i]); } } pluginNames = core.getConfig().getPluginNames(); Iterator pluginIt = pluginNames.iterator(); int progressJump = 10 / pluginNames.size(); core.getSplashScreen().setProgression(40); while(pluginIt.hasNext()) { String pluginName = (String)pluginIt.next(); core.getSplashScreen().setProgressionAndStatus(core.getSplashScreen().getProgression()+progressJump, "Loading plugin '"+pluginName+"' ..."); loadPlugin(pluginName); } return true; } | 47012 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47012/88402a3bc59123261d50a7cfed0ac20de2b772f6/PluginManager.java/buggy/src/thaw/core/PluginManager.java | [
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if (la[i] instanceof ItemStateLifeCycleListener) { ((ItemStateLifeCycleListener) la[i]).statusChanged(this, oldStatus); | if (la[i] != null) { la[i].statusChanged(this, oldStatus); | void setStatus(int newStatus) { int oldStatus = status; if (oldStatus == newStatus) { return; } if (Status.isTerminalStatus(oldStatus)) { throw new IllegalStateException("State is already in terminal status " + oldStatus); } if (Status.isValidStatusChange(oldStatus, newStatus, isWorkspaceState)) { status = newStatus; } else { throw new IllegalArgumentException("Invalid new status " + newStatus + " for state with status " + oldStatus); } // notifiy listeners about status change // copy listeners to array to avoid ConcurrentModificationException ItemStateLifeCycleListener[] la; synchronized (listeners) { la = (ItemStateLifeCycleListener[]) listeners.toArray(new ItemStateLifeCycleListener[listeners.size()]); } for (int i = 0; i < la.length; i++) { if (la[i] instanceof ItemStateLifeCycleListener) { ((ItemStateLifeCycleListener) la[i]).statusChanged(this, oldStatus); } } if (status == Status.MODIFIED) { // change back tmp MODIFIED status, that is used only to have a marker // to inform the overlaying state, that it needs to synchronize with // its overlayed state again // TODO: improve... status = Status.EXISTING; } } | 49304 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49304/a697c8379c6a42f34da9483c7fdf1acfe95896b6/ItemState.java/buggy/contrib/spi/jcr2spi/src/main/java/org/apache/jackrabbit/jcr2spi/state/ItemState.java | [
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} | } | private void readObject(ObjectInputStream stream) throws IOException, ClassNotFoundException { // TODO } // readObject() | 1056 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1056/49e488b8530051383b90b1357fa767c87c9ff7f5/JMenuItem.java/clean/core/src/classpath/javax/javax/swing/JMenuItem.java | [
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int [] result = new int[316]; | int [] result = new int[343]; | private static int [] zzUnpackRowMap() { int [] result = new int[316]; int offset = 0; offset = zzUnpackRowMap(ZZ_ROWMAP_PACKED_0, offset, result); return result; } | 50493 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50493/58e844dc77aa5d1ee9f4952f22f0f7b6b8469457/CSSTokenizerFilter.java/buggy/src/freenet/clients/http/filter/CSSTokenizerFilter.java | [
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if (getElevation()>getGame().getBoard().getHex(curPos).getCeiling()) { | if (getElevation()>getGame().getBoard().getHex(curPos).ceiling()) { | public boolean checkMovementInBuilding(Coords lastPos, Coords curPos, MoveStep step, IHex curHex, IHex prevHex) { if (this instanceof VTOL) { if (getElevation()>getGame().getBoard().getHex(curPos).getCeiling()) { return false; } } if ( !lastPos.equals(curPos) && step.getMovementType() != IEntityMovementType.MOVE_JUMP && ( curHex.containsTerrain(Terrains.BUILDING) || (prevHex != null && prevHex.containsTerrain(Terrains.BUILDING)) ) && !(this instanceof Infantry) ) { return true; } else { return false; } } | 4135 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4135/e41efaa0e6ade67bb1598d7a434c9347aef09489/Entity.java/clean/megamek/src/megamek/common/Entity.java | [
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fQuickAssistant = new ManifestQuickAssistAssistant(); | fQuickAssistant = new PDEQuickAssistAssistant(); | public IQuickAssistAssistant getQuickAssistAssistant(ISourceViewer sourceViewer) { if (sourceViewer.isEditable()) { if (fQuickAssistant == null) fQuickAssistant = new ManifestQuickAssistAssistant(); return fQuickAssistant; } return null; } | 8783 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8783/a6f454c5d638c8d1e73081336f008bf44d0d46a2/ManifestConfiguration.java/clean/ui/org.eclipse.pde.ui/src/org/eclipse/pde/internal/ui/editor/text/ManifestConfiguration.java | [
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SIRPipeline wrapper = new SIRPipeline(oldParent, "wrapper_" + str.getName(), JFieldDeclaration.EMPTY(), JMethodDeclaration.EMPTY()); | SIRPipeline wrapper = new SIRPipeline(oldParent, str.getIdent()); | public static SIRPipeline makeWrapper(SIRStream str) { // wrapper.add below changes the parent of str, so grab the // old parent now. SIRContainer oldParent = str.getParent(); SIRPipeline wrapper = new SIRPipeline(oldParent, "wrapper_" + str.getName(), JFieldDeclaration.EMPTY(), JMethodDeclaration.EMPTY()); wrapper.setInit(SIRStream.makeEmptyInit()); wrapper.add(str); if (oldParent.getParent()!=null) { oldParent.replace(str, wrapper); } return wrapper; } | 5955 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5955/42e5596da0832a92c84e3186dade7890ea846371/SIRContainer.java/buggy/streams/src/at/dms/kjc/sir/SIRContainer.java | [
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substitutionGroupElementDeclIndex = | substitutionGroupElementDeclIndex = | private QName traverseElementDecl(Element elementDecl) throws Exception { int contentSpecType = -1; int contentSpecNodeIndex = -1; int typeNameIndex = -1; int scopeDefined = -2; //signal a error if -2 gets gets through //cause scope can never be -2. DatatypeValidator dv = null; String name = elementDecl.getAttribute(SchemaSymbols.ATT_NAME); if ( DEBUGGING ) System.out.println("traversing element decl : " + name ); String ref = elementDecl.getAttribute(SchemaSymbols.ATT_REF); String type = elementDecl.getAttribute(SchemaSymbols.ATT_TYPE); String minOccurs = elementDecl.getAttribute(SchemaSymbols.ATT_MINOCCURS); String maxOccurs = elementDecl.getAttribute(SchemaSymbols.ATT_MAXOCCURS); String dflt = elementDecl.getAttribute(SchemaSymbols.ATT_DEFAULT); String fixed = elementDecl.getAttribute(SchemaSymbols.ATT_FIXED); if(!(dflt.equals("") || fixed.equals(""))) // REVISIT: localize reportGenericSchemaError("an element cannot have both \"fixed\" and \"default\" present at the same time"); String substitutionGroup = elementDecl.getAttribute(SchemaSymbols.ATT_SUBSTITUTIONGROUP); // form attribute String isQName = elementDecl.getAttribute(SchemaSymbols.ATT_FORM); String fromAnotherSchema = null; if (isTopLevel(elementDecl)) { if(name.equals("")) // REVISIT: localize reportGenericSchemaError("globally-declared element must have a name"); else if (!ref.equals("")) // REVISIT: localize reportGenericSchemaError("globally-declared element " + name + " cannot have a ref attribute"); int nameIndex = fStringPool.addSymbol(name); int eltKey = fSchemaGrammar.getElementDeclIndex(fTargetNSURI, nameIndex,TOP_LEVEL_SCOPE); if (eltKey > -1 ) { return new QName(-1,nameIndex,nameIndex,fTargetNSURI); } } // parse out 'block', 'final', 'nullable', 'abstract' String blockSetStr = null; Attr blockAttr = elementDecl.getAttributeNode( SchemaSymbols.ATT_BLOCK ); if (blockAttr != null) blockSetStr = blockAttr.getValue(); int blockSet = parseBlockSet(blockSetStr); if( (blockSetStr != null) && !blockSetStr.equals("") && (!blockSetStr.equals(SchemaSymbols.ATTVAL_POUNDALL) && (((blockSet & SchemaSymbols.RESTRICTION) == 0) && (((blockSet & SchemaSymbols.EXTENSION) == 0) && ((blockSet & SchemaSymbols.SUBSTITUTION) == 0))))) reportGenericSchemaError("The values of the 'block' attribute of an element must be either #all or a list of 'substitution', 'restriction' and 'extension'; " + blockSetStr + " was found"); String finalSetStr = null; Attr finalAttr = elementDecl.getAttributeNode( SchemaSymbols.ATT_FINAL ); if (finalAttr != null) finalSetStr = finalAttr.getValue(); int finalSet = parseFinalSet(finalSetStr); if( (finalSetStr != null) && !finalSetStr.equals("") && (!finalSetStr.equals(SchemaSymbols.ATTVAL_POUNDALL) && (((finalSet & SchemaSymbols.RESTRICTION) == 0) && ((finalSet & SchemaSymbols.EXTENSION) == 0)))) reportGenericSchemaError("The values of the 'final' attribute of an element must be either #all or a list of 'restriction' and 'extension'; " + finalSetStr + " was found"); boolean isNullable = elementDecl.getAttribute (SchemaSymbols.ATT_NULLABLE).equals(SchemaSymbols.ATTVAL_TRUE)? true:false; boolean isAbstract = elementDecl.getAttribute (SchemaSymbols.ATT_ABSTRACT).equals(SchemaSymbols.ATTVAL_TRUE)? true:false; int elementMiscFlags = 0; if (isNullable) { elementMiscFlags += SchemaSymbols.NULLABLE; } if (isAbstract) { elementMiscFlags += SchemaSymbols.ABSTRACT; } // make the property of the element's value being fixed also appear in elementMiscFlags if(!fixed.equals("")) elementMiscFlags += SchemaSymbols.FIXED; //if this is a reference to a global element if (!ref.equals("")) { //REVISIT top level check for ref if (!type.equals("") || (elementMiscFlags > 0) || (finalSetStr != null && finalSet > 0) || (blockSetStr != null && blockSet > 0) || !dflt.equals("") || !fixed.equals("")) reportSchemaError(SchemaMessageProvider.BadAttWithRef, null); if (!name.equals("")) // REVISIT: Localize reportGenericSchemaError("element " + name + " cannot also have a ref attribute"); Element child = XUtil.getFirstChildElement(elementDecl); if(child != null && child.getLocalName().equals(SchemaSymbols.ELT_ANNOTATION)) { if (XUtil.getNextSiblingElement(child) != null) reportSchemaError(SchemaMessageProvider.NoContentForRef, null); else traverseAnnotationDecl(child); } else if (child != null) reportSchemaError(SchemaMessageProvider.NoContentForRef, null); String prefix = ""; String localpart = ref; int colonptr = ref.indexOf(":"); if ( colonptr > 0) { prefix = ref.substring(0,colonptr); localpart = ref.substring(colonptr+1); } int localpartIndex = fStringPool.addSymbol(localpart); String uriString = resolvePrefixToURI(prefix); QName eltName = new QName(prefix != null ? fStringPool.addSymbol(prefix) : -1, localpartIndex, fStringPool.addSymbol(ref), uriString != null ? fStringPool.addSymbol(uriString) : StringPool.EMPTY_STRING); //if from another schema, just return the element QName if (! uriString.equals(fTargetNSURIString) ) { return eltName; } int elementIndex = fSchemaGrammar.getElementDeclIndex(eltName, TOP_LEVEL_SCOPE); //if not found, traverse the top level element that if referenced if (elementIndex == -1 ) { Element targetElement = getTopLevelComponentByName(SchemaSymbols.ELT_ELEMENT,localpart); if (targetElement == null ) { // REVISIT: Localize reportGenericSchemaError("Element " + localpart + " not found in the Schema"); //REVISIT, for now, the QName anyway return eltName; //return new QName(-1,fStringPool.addSymbol(localpart), -1, fStringPool.addSymbol(uriString)); } else { // do nothing here, other wise would cause infinite loop for // <element name="recur"><complexType><element ref="recur"> ... //eltName= traverseElementDecl(targetElement); } } return eltName; } else if (name.equals("")) // REVISIT: Localize reportGenericSchemaError("a local element must have a name or a ref attribute present"); // Handle the substitutionGroup Element substitutionGroupElementDecl = null; int substitutionGroupElementDeclIndex = -1; boolean noErrorSoFar = true; String substitutionGroupUri = null; String substitutionGroupLocalpart = null; String substitutionGroupFullName = null; ComplexTypeInfo substitutionGroupEltTypeInfo = null; DatatypeValidator substitutionGroupEltDV = null; if ( substitutionGroup.length() > 0 ) { if(!ref.equals("")) // REVISIT: Localize reportGenericSchemaError("a local element cannot have a substitutionGroup"); substitutionGroupUri = resolvePrefixToURI(getPrefix(substitutionGroup)); substitutionGroupLocalpart = getLocalPart(substitutionGroup); substitutionGroupFullName = substitutionGroupUri+","+substitutionGroupLocalpart; if ( !substitutionGroupUri.equals(fTargetNSURIString) ) { substitutionGroupEltTypeInfo = getElementDeclTypeInfoFromNS(substitutionGroupUri, substitutionGroupLocalpart); if (substitutionGroupEltTypeInfo == null) { substitutionGroupEltDV = getElementDeclTypeValidatorFromNS(substitutionGroupUri, substitutionGroupLocalpart); if (substitutionGroupEltDV == null) { //TO DO: report error here; noErrorSoFar = false; reportGenericSchemaError("Could not find type for element '" +substitutionGroupLocalpart + "' in schema '" + substitutionGroupUri+"'"); } } } else { substitutionGroupElementDecl = getTopLevelComponentByName(SchemaSymbols.ELT_ELEMENT, substitutionGroupLocalpart); if (substitutionGroupElementDecl == null) { substitutionGroupElementDeclIndex = fSchemaGrammar.getElementDeclIndex(fTargetNSURI, getLocalPartIndex(substitutionGroup),TOP_LEVEL_SCOPE); if ( substitutionGroupElementDeclIndex == -1) { noErrorSoFar = false; // REVISIT: Localize reportGenericSchemaError("unable to locate substitutionGroup affiliation element " +substitutionGroup +" in element declaration " +name); } } else { substitutionGroupElementDeclIndex = fSchemaGrammar.getElementDeclIndex(fTargetNSURI, getLocalPartIndex(substitutionGroup),TOP_LEVEL_SCOPE); if ( substitutionGroupElementDeclIndex == -1) { traverseElementDecl(substitutionGroupElementDecl); substitutionGroupElementDeclIndex = fSchemaGrammar.getElementDeclIndex(fTargetNSURI, getLocalPartIndex(substitutionGroup),TOP_LEVEL_SCOPE); } } if (substitutionGroupElementDeclIndex != -1) { substitutionGroupEltTypeInfo = fSchemaGrammar.getElementComplexTypeInfo( substitutionGroupElementDeclIndex ); if (substitutionGroupEltTypeInfo == null) { fSchemaGrammar.getElementDecl(substitutionGroupElementDeclIndex, fTempElementDecl); substitutionGroupEltDV = fTempElementDecl.datatypeValidator; if (substitutionGroupEltDV == null) { //TO DO: report error here; noErrorSoFar = false; reportGenericSchemaError("Could not find type for element '" +substitutionGroupLocalpart + "' in schema '" + substitutionGroupUri+"'"); } } } } } // // resolving the type for this element right here // ComplexTypeInfo typeInfo = null; // element has a single child element, either a datatype or a type, null if primitive Element child = XUtil.getFirstChildElement(elementDecl); if(child != null && child.getLocalName().equals(SchemaSymbols.ELT_ANNOTATION)) { traverseAnnotationDecl(child); child = XUtil.getNextSiblingElement(child); } if(child != null && child.getLocalName().equals(SchemaSymbols.ELT_ANNOTATION)) // REVISIT: Localize reportGenericSchemaError("element declarations can contain at most one annotation Element Information Item"); boolean haveAnonType = false; // Handle Anonymous type if there is one if (child != null) { String childName = child.getLocalName(); if (childName.equals(SchemaSymbols.ELT_COMPLEXTYPE)) { if (child.getAttribute(SchemaSymbols.ATT_NAME).length() > 0) { noErrorSoFar = false; // REVISIT: Localize reportGenericSchemaError("anonymous complexType in element '" + name +"' has a name attribute"); } else { // Determine what the type name will be String anonTypeName = genAnonTypeName(child); if (fCurrentTypeNameStack.search((Object)anonTypeName) > - 1) { // A recursing element using an anonymous type int uriInd = StringPool.EMPTY_STRING; if ( isQName.equals(SchemaSymbols.ATTVAL_QUALIFIED)|| fElementDefaultQualified) { uriInd = fTargetNSURI; } int nameIndex = fStringPool.addSymbol(name); QName tempQName = new QName(fCurrentScope, nameIndex, nameIndex, uriInd); fElementRecurseComplex.put(tempQName, anonTypeName); return new QName(-1, nameIndex, nameIndex, uriInd); } else { typeNameIndex = traverseComplexTypeDecl(child); if (typeNameIndex != -1 ) { typeInfo = (ComplexTypeInfo) fComplexTypeRegistry.get(fStringPool.toString(typeNameIndex)); } else { noErrorSoFar = false; // REVISIT: Localize reportGenericSchemaError("traverse complexType error in element '" + name +"'"); } } } haveAnonType = true; child = XUtil.getNextSiblingElement(child); } else if (childName.equals(SchemaSymbols.ELT_SIMPLETYPE)) { if (child.getAttribute(SchemaSymbols.ATT_NAME).length() > 0) { noErrorSoFar = false; // REVISIT: Localize reportGenericSchemaError("anonymous simpleType in element '" + name +"' has a name attribute"); } else typeNameIndex = traverseSimpleTypeDecl(child); if (typeNameIndex != -1) { dv = fDatatypeRegistry.getDatatypeValidator(fStringPool.toString(typeNameIndex)); } else { noErrorSoFar = false; // REVISIT: Localize reportGenericSchemaError("traverse simpleType error in element '" + name +"'"); } contentSpecType = XMLElementDecl.TYPE_SIMPLE; haveAnonType = true; child = XUtil.getNextSiblingElement(child); } else if (type.equals("")) { // "ur-typed" leaf contentSpecType = XMLElementDecl.TYPE_ANY; //REVISIT: is this right? //contentSpecType = fStringPool.addSymbol("UR_TYPE"); // set occurrence count contentSpecNodeIndex = -1; } // see if there's something here; it had better be key, keyref or unique. if (child != null) childName = child.getLocalName(); while ((child != null) && ((childName.equals(SchemaSymbols.ELT_KEY)) || (childName.equals(SchemaSymbols.ELT_KEYREF)) || (childName.equals(SchemaSymbols.ELT_UNIQUE)))) { child = XUtil.getNextSiblingElement(child); if (child != null) { childName = child.getLocalName(); } } if (child != null) { // REVISIT: Localize noErrorSoFar = false; reportGenericSchemaError("the content of an element information item must match (annotation?, (simpleType | complexType)?, (unique | key | keyref)*)"); } } // handle type="" here if (haveAnonType && (type.length()>0)) { noErrorSoFar = false; // REVISIT: Localize reportGenericSchemaError( "Element '"+ name + "' have both a type attribute and a annoymous type child" ); } // type specified as an attribute and no child is type decl. else if (!type.equals("")) { String prefix = ""; String localpart = type; int colonptr = type.indexOf(":"); if ( colonptr > 0) { prefix = type.substring(0,colonptr); localpart = type.substring(colonptr+1); } String typeURI = resolvePrefixToURI(prefix); // check if the type is from the same Schema if ( !typeURI.equals(fTargetNSURIString) && !typeURI.equals(SchemaSymbols.URI_SCHEMAFORSCHEMA) && typeURI.length() != 0) { // REVISIT, only needed because of resolvePrifixToURI. fromAnotherSchema = typeURI; typeInfo = getTypeInfoFromNS(typeURI, localpart); if (typeInfo == null) { dv = getTypeValidatorFromNS(typeURI, localpart); if (dv == null) { //TO DO: report error here; noErrorSoFar = false; reportGenericSchemaError("Could not find type " +localpart + " in schema " + typeURI); } } } else { typeInfo = (ComplexTypeInfo) fComplexTypeRegistry.get(typeURI+","+localpart); if (typeInfo == null) { dv = getDatatypeValidator(typeURI, localpart); if (dv == null ) if (typeURI.equals(SchemaSymbols.URI_SCHEMAFORSCHEMA) && !fTargetNSURIString.equals(SchemaSymbols.URI_SCHEMAFORSCHEMA)) { noErrorSoFar = false; // REVISIT: Localize reportGenericSchemaError("type not found : " + typeURI+":"+localpart); } else { Element topleveltype = getTopLevelComponentByName(SchemaSymbols.ELT_COMPLEXTYPE,localpart); if (topleveltype != null) { if (fCurrentTypeNameStack.search((Object)localpart) > - 1) { //then we found a recursive element using complexType. // REVISIT: this will be broken when recursing happens between 2 schemas int uriInd = StringPool.EMPTY_STRING; if ( isQName.equals(SchemaSymbols.ATTVAL_QUALIFIED)|| fElementDefaultQualified) { uriInd = fTargetNSURI; } int nameIndex = fStringPool.addSymbol(name); QName tempQName = new QName(fCurrentScope, nameIndex, nameIndex, uriInd); fElementRecurseComplex.put(tempQName, localpart); return new QName(-1, nameIndex, nameIndex, uriInd); } else { typeNameIndex = traverseComplexTypeDecl( topleveltype ); typeInfo = (ComplexTypeInfo) fComplexTypeRegistry.get(fStringPool.toString(typeNameIndex)); } } else { topleveltype = getTopLevelComponentByName(SchemaSymbols.ELT_SIMPLETYPE, localpart); if (topleveltype != null) { typeNameIndex = traverseSimpleTypeDecl( topleveltype ); dv = getDatatypeValidator(typeURI, localpart); } else { noErrorSoFar = false; // REVISIT: Localize reportGenericSchemaError("type not found : " + typeURI+":"+localpart); } } } } } } // now we need to make sure that our substitution (if any) // is valid, now that we have all the requisite type-related info. if(substitutionGroup.length() > 0) { checkSubstitutionGroupOK(elementDecl, substitutionGroupElementDecl, noErrorSoFar, substitutionGroupElementDeclIndex, typeInfo, substitutionGroupEltTypeInfo, dv, substitutionGroupEltDV); } // this element is ur-type, check its substitutionGroup affiliation. // if there is substitutionGroup affiliation and not type definition found for this element, // then grab substitutionGroup affiliation's type and give it to this element if ( noErrorSoFar && typeInfo == null && dv == null ) { typeInfo = substitutionGroupEltTypeInfo; dv = substitutionGroupEltDV; } if (typeInfo == null && dv==null) { if (noErrorSoFar) { // Actually this Element's type definition is ur-type; contentSpecType = XMLElementDecl.TYPE_ANY; // REVISIT, need to wait till we have wildcards implementation. // ADD attribute wildcards here } else { noErrorSoFar = false; // REVISIT: Localize reportGenericSchemaError ("untyped element : " + name ); } } // if element belongs to a compelx type if (typeInfo!=null) { contentSpecNodeIndex = typeInfo.contentSpecHandle; contentSpecType = typeInfo.contentType; scopeDefined = typeInfo.scopeDefined; dv = typeInfo.datatypeValidator; } // if element belongs to a simple type if (dv!=null) { contentSpecType = XMLElementDecl.TYPE_SIMPLE; if (typeInfo == null) { fromAnotherSchema = null; // not to switch schema in this case } } // Now we can handle validation etc. of default and fixed attributes, // since we finally have all the type information. if(!fixed.equals("")) dflt = fixed; if(!dflt.equals("")) { if(dv == null) { // in this case validate according to xs:string new StringDatatypeValidator().validate(dflt, null); } else { dv.validate(dflt, null); } if(typeInfo != null && (typeInfo.contentType != XMLElementDecl.TYPE_MIXED && typeInfo.contentType != XMLElementDecl.TYPE_SIMPLE)) { // REVISIT: Localize reportGenericSchemaError ("element " + name + " has a fixed or default value and must have a mixed or simple content model"); } } // // Create element decl // int elementNameIndex = fStringPool.addSymbol(name); int localpartIndex = elementNameIndex; int uriIndex = StringPool.EMPTY_STRING; int enclosingScope = fCurrentScope; //refer to 4.3.2 in "XML Schema Part 1: Structures" if ( isTopLevel(elementDecl)) { uriIndex = fTargetNSURI; enclosingScope = TOP_LEVEL_SCOPE; } else if ( !isQName.equals(SchemaSymbols.ATTVAL_UNQUALIFIED) && (( isQName.equals(SchemaSymbols.ATTVAL_QUALIFIED)|| fElementDefaultQualified ))) { uriIndex = fTargetNSURI; } //There can never be two elements with the same name and different type in the same scope. int existSuchElementIndex = fSchemaGrammar.getElementDeclIndex(uriIndex, localpartIndex, enclosingScope); if ( existSuchElementIndex > -1) { fSchemaGrammar.getElementDecl(existSuchElementIndex, fTempElementDecl); DatatypeValidator edv = fTempElementDecl.datatypeValidator; ComplexTypeInfo eTypeInfo = fSchemaGrammar.getElementComplexTypeInfo(existSuchElementIndex); if ( ((eTypeInfo != null)&&(eTypeInfo!=typeInfo)) || ((edv != null)&&(edv != dv)) ) { noErrorSoFar = false; // REVISIT: Localize reportGenericSchemaError("duplicate element decl in the same scope : " + fStringPool.toString(localpartIndex)); } } QName eltQName = new QName(-1,localpartIndex,elementNameIndex,uriIndex); // add element decl to pool int attrListHead = -1 ; // copy up attribute decls from type object if (typeInfo != null) { attrListHead = typeInfo.attlistHead; } int elementIndex = fSchemaGrammar.addElementDecl(eltQName, enclosingScope, scopeDefined, contentSpecType, contentSpecNodeIndex, attrListHead, dv); if ( DEBUGGING ) { /***/ System.out.println("########elementIndex:"+elementIndex+" ("+fStringPool.toString(eltQName.uri)+"," + fStringPool.toString(eltQName.localpart) + ")"+ " eltType:"+type+" contentSpecType:"+contentSpecType+ " SpecNodeIndex:"+ contentSpecNodeIndex +" enclosingScope: " +enclosingScope + " scopeDefined: " +scopeDefined+"\n"); /***/ } fSchemaGrammar.setElementComplexTypeInfo(elementIndex, typeInfo); // REVISIT: should we report error if typeInfo was null? // mark element if its type belongs to different Schema. fSchemaGrammar.setElementFromAnotherSchemaURI(elementIndex, fromAnotherSchema); // set BlockSet, FinalSet, Nullable and Abstract for this element decl fSchemaGrammar.setElementDeclBlockSet(elementIndex, blockSet); fSchemaGrammar.setElementDeclFinalSet(elementIndex, finalSet); fSchemaGrammar.setElementDeclMiscFlags(elementIndex, elementMiscFlags); fSchemaGrammar.setElementDefault(elementIndex, dflt); // setSubstitutionGroupElementFullName fSchemaGrammar.setElementDeclSubstitutionGroupElementFullName(elementIndex, substitutionGroupFullName); // // key/keyref/unique processing // Element ic = XUtil.getFirstChildElementNS(elementDecl, IDENTITY_CONSTRAINTS); if (ic != null) { Integer elementIndexObj = new Integer(elementIndex); Vector identityConstraints = (Vector)fIdentityConstraints.get(elementIndexObj); if (identityConstraints == null) { identityConstraints = new Vector(); fIdentityConstraints.put(elementIndexObj, identityConstraints); } while (ic != null) { if (DEBUG_IC_DATATYPES) { System.out.println("<ICD>: adding ic for later traversal: "+ic); } identityConstraints.addElement(ic); ic = XUtil.getNextSiblingElementNS(ic, IDENTITY_CONSTRAINTS); } } return eltQName; }// end of method traverseElementDecl(Element) | 46079 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46079/0561c4be90e07e6ba8d6b8f42edef5dc8d6d453c/TraverseSchema.java/buggy/src/org/apache/xerces/validators/schema/TraverseSchema.java | [
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final IPath containerPath = resourceGroup.getContainerFullPath(); IPath newFilePath = containerPath.append(resourceGroup.getResource()); final IFile newFileHandle = createFileHandle(newFilePath); final InputStream initialContents = getInitialContents(); | final IPath containerPath = resourceGroup.getContainerFullPath(); IPath newFilePath = containerPath.append(resourceGroup.getResource()); final IFile newFileHandle = createFileHandle(newFilePath); final InputStream initialContents = getInitialContents(); | public IFile createNewFile() { if (newFile != null) { return newFile; } // create the new file and cache it if successful final IPath containerPath = resourceGroup.getContainerFullPath(); IPath newFilePath = containerPath.append(resourceGroup.getResource()); final IFile newFileHandle = createFileHandle(newFilePath); final InputStream initialContents = getInitialContents(); createLinkTarget(); IRunnableWithProgress op = new IRunnableWithProgress() { public void run(IProgressMonitor monitor) throws InvocationTargetException { CreateFileOperation op = new CreateFileOperation( newFileHandle, linkTargetPath, initialContents, IDEWorkbenchMessages.WizardNewFileCreationPage_title); try { PlatformUI.getWorkbench().getOperationSupport() .getOperationHistory().execute(op, monitor, WorkspaceUndoUtil.getUIInfoAdapter(getShell())); } catch (ExecutionException e) { if (e.getCause() instanceof CoreException) { ErrorDialog .openError( getContainer().getShell(), // Was Utilities.getFocusShell() IDEWorkbenchMessages.WizardNewFileCreationPage_errorTitle, null, // no special message ((CoreException) e.getCause()) .getStatus()); } else { throw new InvocationTargetException(e); } } } }; try { getContainer().run(true, true, op); } catch (InterruptedException e) { return null; } catch (InvocationTargetException e) { // Execution Exceptions are handled above but we may still get unexpected runtime errors. IDEWorkbenchPlugin.log(getClass(), "createNewFile()", e.getTargetException()); //$NON-NLS-1$ MessageDialog .openError( getContainer().getShell(), IDEWorkbenchMessages.WizardNewFileCreationPage_internalErrorTitle, NLS.bind(IDEWorkbenchMessages.WizardNewFileCreationPage_internalErrorMessage, e.getTargetException().getMessage())); return null; } newFile = newFileHandle; return newFile; } | 55805 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55805/6acf364392177fabaa2905c86fa45a3dac0a3db3/WizardNewFileCreationPage.java/buggy/bundles/org.eclipse.ui.ide/extensions/org/eclipse/ui/dialogs/WizardNewFileCreationPage.java | [
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long newModTime = getModificationTime(); | long curModTime = getModificationTime(); | public void execute() { long newModTime = getModificationTime(); if (lastModTime != newModTime) { reconfigure(); lastModTime = newModTime; } } | 45952 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45952/e6e7b9098fd3143ac76e98e9c52bf3e103039bc9/TimedLocationWatchdog.java/buggy/src/java/org/apache/log4j/watchdog/TimedLocationWatchdog.java | [
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IConfigurationElement[] children = config .getChildren(IWorkbenchRegistryConstants.TAG_ENABLEMENT); if (children.length > 0) { enablementExpression = new ActionExpression(children[0]); return; } | IConfigurationElement[] children = config .getChildren(IWorkbenchRegistryConstants.TAG_ENABLEMENT); if (children.length > 0) { enablementExpression = new ActionExpression(children[0]); return; } | private void parseClasses(IConfigurationElement config) { // Get enables for. String enablesFor = config .getAttribute(IWorkbenchRegistryConstants.ATT_ENABLES_FOR); if (enablesFor == null) enablesFor = "*"; //$NON-NLS-1$ if (enablesFor.equals("*")) //$NON-NLS-1$ mode = ANY_NUMBER; else if (enablesFor.equals("?")) //$NON-NLS-1$ mode = NONE_OR_ONE; else if (enablesFor.equals("!")) //$NON-NLS-1$ mode = NONE; else if (enablesFor.equals("+")) //$NON-NLS-1$ mode = ONE_OR_MORE; else if (enablesFor.equals("multiple") //$NON-NLS-1$ || enablesFor.equals("2+")) //$NON-NLS-1$ mode = MULTIPLE; else { try { mode = Integer.parseInt(enablesFor); } catch (NumberFormatException e) { mode = UNKNOWN; } } // Get enablement block. IConfigurationElement[] children = config .getChildren(IWorkbenchRegistryConstants.TAG_ENABLEMENT); if (children.length > 0) { enablementExpression = new ActionExpression(children[0]); return; } // Get selection block. children = config.getChildren(IWorkbenchRegistryConstants.TAG_SELECTION); if (children.length > 0) { classes = new ArrayList(); for (int i = 0; i < children.length; i++) { IConfigurationElement sel = children[i]; String cname = sel.getAttribute(IWorkbenchRegistryConstants.ATT_CLASS); String name = sel.getAttribute(IWorkbenchRegistryConstants.ATT_NAME); SelectionClass sclass = new SelectionClass(); sclass.className = cname; sclass.nameFilter = name; classes.add(sclass); } } } | 56152 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56152/5cfb5f88a049bbc9efcf0fade7d5687d0ec50ed3/SelectionEnabler.java/buggy/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/SelectionEnabler.java | [
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} else if (packet.isFlagSet(Packet.FLAG_SYNCHRONIZE)) { | } else { | private void receiveKnownCon(Connection con, Packet packet) { // the packet is pointed at a stream ID we're receiving on if (isValidMatch(con.getSendStreamId(), packet.getReceiveStreamId())) { // the packet's receive stream ID also matches what we expect //if (_log.shouldLog(Log.DEBUG)) // _log.debug("receive valid: " + packet); try { con.getPacketHandler().receivePacket(packet, con); } catch (I2PException ie) { if (_log.shouldLog(Log.WARN)) _log.warn("Received forged packet for " + con, ie); } } else { if (packet.isFlagSet(Packet.FLAG_RESET)) { // refused if (_log.shouldLog(Log.DEBUG)) _log.debug("receive reset: " + packet); try { con.getPacketHandler().receivePacket(packet, con); } catch (I2PException ie) { if (_log.shouldLog(Log.WARN)) _log.warn("Received forged reset for " + con, ie); } } else if (packet.isFlagSet(Packet.FLAG_SYNCHRONIZE)) { if ( (con.getSendStreamId() == null) || (DataHelper.eq(con.getSendStreamId(), packet.getReceiveStreamId())) ) { byte oldId[] =con.getSendStreamId(); // con fully established, w00t con.setSendStreamId(packet.getReceiveStreamId()); try { con.getPacketHandler().receivePacket(packet, con); } catch (I2PException ie) { if (_log.shouldLog(Log.WARN)) _log.warn("Received forged syn for " + con, ie); con.setSendStreamId(oldId); } } else { if (_log.shouldLog(Log.WARN)) _log.warn("Receive a syn packet with the wrong IDs, sending reset: " + packet); sendReset(packet); } } else { if (!con.getResetSent()) { // someone is sending us a packet on the wrong stream if (_log.shouldLog(Log.WARN)) _log.warn("Received a packet on the wrong stream: " + packet + " connection: " + con); } } } } | 3808 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3808/c17433cb9342d6d49730c0ed662f8cb0369629bb/PacketHandler.java/buggy/apps/streaming/java/src/net/i2p/client/streaming/PacketHandler.java | [
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void _switchDefScrollPane() { // demoted to package private protection to test the disabling editing while // compiling functionality. // Sync caret with location before switching _currentDefPane.getOpenDocument(). syncCurrentLocationWithDefinitions( _currentDefPane.getCaretPosition() ); // Remove any error highlighting in the old def pane _currentDefPane.removeErrorHighlight(); JScrollPane scroll = _defScrollPanes.get(_model.getActiveDocument()); if (scroll == null) { throw new UnexpectedException(new Exception( "Current definitions scroll pane not found.")); } int oldLocation = _docSplitPane.getDividerLocation(); // Following line should fix "Dancing UI" bug // scroll.setPreferredSize(_docSplitPane.getRightComponent().getPreferredSize()); _docSplitPane.setRightComponent(scroll); _docSplitPane.setDividerLocation(oldLocation); // if the current def pane is uneditable, that means // we arrived here from a compile with errors. We're // guaranteed to make it editable again when we // return from the compilation, so we take the state // with us. We guarantee only one definitions pane // is un-editable at any time. if ( _currentDefPane.isEditable() ){ _currentDefPane = (DefinitionsPane) scroll.getViewport().getView(); } else { _currentDefPane.setEditable(true); _currentDefPane = (DefinitionsPane) scroll.getViewport().getView(); _currentDefPane.setEditable(false); } // reset the undo/redo menu items _undoAction.setDelegatee(_currentDefPane.getUndoAction()); _redoAction.setDelegatee(_currentDefPane.getRedoAction()); if(inDebugMode()) { _updateDebugStatus(); } } | 11192 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/11192/6df23b9d947a754084cff460e34d203b0d81fd48/MainFrame.java/buggy/drjava/src/edu/rice/cs/drjava/ui/MainFrame.java | [
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" 19 getstatic java/lang/System.out Ljava/io/PrintStream; [26]\n" + " 22 invokevirtual java/io/PrintStream.println()V [31]\n" + " 25 getstatic java/lang/System.out Ljava/io/PrintStream; [26]\n" + | " 19 getstatic java.lang.System.out : java.io.PrintStream [26]\n" + " 22 invokevirtual java.io.PrintStream.println() : void [31]\n" + " 25 getstatic java.lang.System.out : java.io.PrintStream [26]\n" + | public void test032() { // boolean expression this.runConformTest( new String[] { "X.java", "public class X {\n" + " public static void main(String[] s) {\n" + " if (new Integer(1) == new Integer(0)) {\n" + " System.out.println();\n" + " }\n" + " System.out.print(\"SUCCESS\");\n" + " }\n" + "}", }, "SUCCESS" ); ClassFileBytesDisassembler disassembler = ToolFactory.createDefaultClassFileBytesDisassembler(); String actualOutput = null; try { byte[] classFileBytes = org.eclipse.jdt.internal.compiler.util.Util.getFileByteContent(new File(OUTPUT_DIR + File.separator +"X.class")); actualOutput = disassembler.disassemble( classFileBytes, "\n", ClassFileBytesDisassembler.DETAILED); } catch (org.eclipse.jdt.core.util.ClassFormatException e) { assertTrue("ClassFormatException", false); } catch (IOException e) { assertTrue("IOException", false); } String expectedOutput = " // Method descriptor #15 ([Ljava/lang/String;)V\n" + " // Stack: 4, Locals: 1\n" + " public static void main(String[] s);\n" + " 0 new java/lang/Integer [17]\n" + " 3 dup\n" + " 4 iconst_1\n" + " 5 invokespecial java/lang/Integer.<init>(I)V [20]\n" + " 8 new java/lang/Integer [17]\n" + " 11 dup\n" + " 12 iconst_0\n" + " 13 invokespecial java/lang/Integer.<init>(I)V [20]\n" + " 16 if_acmpne 25\n" + " 19 getstatic java/lang/System.out Ljava/io/PrintStream; [26]\n" + " 22 invokevirtual java/io/PrintStream.println()V [31]\n" + " 25 getstatic java/lang/System.out Ljava/io/PrintStream; [26]\n" + " 28 ldc <String \"SUCCESS\"> [33]\n" + " 30 invokevirtual java/io/PrintStream.print(Ljava/lang/String;)V [37]\n" + " 33 return\n"; int index = actualOutput.indexOf(expectedOutput); if (index == -1 || expectedOutput.length() == 0) { System.out.println(Util.displayString(actualOutput, 3)); } if (index == -1) { assertEquals("Wrong contents", expectedOutput, actualOutput); } } | 10698 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/10698/e9ca95978aca2a442bfecfb8ac281f372092486a/AutoBoxingTest.java/clean/org.eclipse.jdt.core.tests.compiler/src/org/eclipse/jdt/core/tests/compiler/regression/AutoBoxingTest.java | [
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String resolvedLinkTarget = resolvedPathLabelData.getText(); path = new Path(resolvedLinkTarget); | public IStatus validateLinkLocation(IResource linkHandle) { if (linkTargetField == null || linkTargetField.isDisposed()) { return createStatus(IStatus.OK, ""); //$NON-NLS-1$ } IWorkspace workspace = IDEWorkbenchPlugin.getPluginWorkspace(); IPath path = new Path(linkTarget); if (createLink == false) { return createStatus(IStatus.OK, ""); //$NON-NLS-1$ } if (path.isUNC()) { // print that path is not valid, but don't do core validation. See // bug 90825. return createStatus( IStatus.WARNING, IDEWorkbenchMessages.CreateLinkedResourceGroup_unableToValidateLinkTarget); } IStatus locationStatus = workspace.validateLinkLocation(linkHandle, path); if (locationStatus.getSeverity() == IStatus.ERROR) { return locationStatus; } // use the resolved link target name String resolvedLinkTarget = resolvedPathLabelData.getText(); path = new Path(resolvedLinkTarget); IFileInfo linkTargetFile = IDEResourceInfoUtils .getFileInfo(resolvedLinkTarget); if (linkTargetFile != null && linkTargetFile.exists()) { IStatus fileTypeStatus = validateFileType(linkTargetFile); if (fileTypeStatus.isOK() == false) { return fileTypeStatus; } } else if (locationStatus.getSeverity() == IStatus.OK) { // locationStatus takes precedence over missing location warning. return createStatus( IStatus.WARNING, IDEWorkbenchMessages.CreateLinkedResourceGroup_linkTargetNonExistent); } return locationStatus; } | 58148 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/58148/f21a158e540a7a992bc7c1d5732d5d6926ff4f2c/CreateLinkedResourceGroup.java/clean/bundles/org.eclipse.ui.ide/src/org/eclipse/ui/internal/ide/dialogs/CreateLinkedResourceGroup.java | [
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tempPos -= (shiftSize - 1); for (int j = 0; j < bytesToShift; j++) { buffer_[tempPos + shiftSize] = buffer_[tempPos]; tempPos--; } tempPos += (shiftSize + 1); | tempPos -= (bytesToShift - 2); System.arraycopy(buffer_, tempPos - shiftSize, buffer_, tempPos , bytesToShift); | private final void compressBLayerData(int continueDssHeaderCount) throws org.apache.derby.client.am.DisconnectException { int tempPos = 0; // jump to the last continuation header. for (int i = 0; i < continueDssHeaderCount; i++) { // the first may be less than the size of a full dss if (i == 0) { // only jump by the number of bytes remaining in the current dss tempPos = pos_ + dssLength_; } else { // all other jumps are for a full continued dss tempPos += 32767; } } // for each of the dss headers to remove, // read out the continuation header and increment the dss length by the // size of the conitnation bytes, then shift the continuation data as needed. int shiftSize = 0; int bytesToShift = 0; int continueHeaderLength = 0; int newDssLength = 0; for (int i = 0; i < continueDssHeaderCount; i++) { continueHeaderLength = ((buffer_[tempPos] & 0xFF) << 8) + ((buffer_[tempPos + 1] & 0xFF) << 0); if (i == 0) { // if this is the last one (farthest down stream and first to strip out) if ((continueHeaderLength & 0x8000) == 0x8000) { // the last dss header is again continued continueHeaderLength = 32767; dssIsContinued_ = true; } else { // the last dss header was not contiued so update continue state flag dssIsContinued_ = false; } // the very first shift size is 2 shiftSize = 2; } else { // already removed the last header so make sure the chaining flag is on if ((continueHeaderLength & 0x8000) == 0x8000) { continueHeaderLength = 32767; } else { // this is a syntax error but not really certain which one. // for now pick 0x02 which is Dss header Length does not match the number // of bytes of data found. doSyntaxrmSemantics(CodePoint.SYNERRCD_DSS_LENGTH_BYTE_NUMBER_MISMATCH); } // increase the shift size by 2 shiftSize += 2; } // it is a syntax error if the dss continuation is less than or equal to two if (continueHeaderLength <= 2) { doSyntaxrmSemantics(CodePoint.SYNERRCD_DSS_CONT_LESS_OR_EQUAL_2); } newDssLength += (continueHeaderLength - 2); // calculate the number of bytes to shift if (i != (continueDssHeaderCount - 1)) { bytesToShift = 32767; } else { bytesToShift = dssLength_; } tempPos -= (shiftSize - 1); // perform the compress for (int j = 0; j < bytesToShift; j++) { buffer_[tempPos + shiftSize] = buffer_[tempPos]; tempPos--; } tempPos += (shiftSize + 1); } // reposition the start of the data after the final dss shift. pos_ = tempPos; dssLength_ = dssLength_ + newDssLength; } | 56322 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56322/9f5bc901b1e5f06637ebdffce8d9c6728455dc1e/Reply.java/clean/java/client/org/apache/derby/client/net/Reply.java | [
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return "[" + replace(id, "]", "]]") + "]"; | StringBuffer buf = new StringBuffer(id.length() + 20); quoteMdxIdentifier(id, buf); return buf.toString(); | public static String quoteMdxIdentifier(String id) { return "[" + replace(id, "]", "]]") + "]"; } | 37907 /local/tlutelli/issta_data/temp/all_java3context/java/2006_temp/2006/37907/0cc18052c959f8014f772086b193e28d7a6dd66a/Util.java/buggy/src/main/mondrian/olap/Util.java | [
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buddies.put(buddy.getGroupId()+"."+buddy.getId(), buddy); | buddies.put(""+buddy.getGroupId()+"."+buddy.getId(), buddy); | void gotBuddy(BuddyItem buddy) { Log.debug("Found buddy item: " + buddy.toString() + " at id " + buddy.getId()); buddies.put(buddy.getGroupId()+"."+buddy.getId(), buddy); if (!highestBuddyIdPerGroup.containsKey(buddy.getGroupId())) { highestBuddyIdPerGroup.put(buddy.getGroupId(), -1); } if (buddy.getId() > highestBuddyIdPerGroup.get(buddy.getGroupId())) { highestBuddyIdPerGroup.put(buddy.getGroupId(), buddy.getId()); } } | 6312 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6312/011d1433221c5f13aeb414e4b462b53f68cdffb5/OSCARSession.java/buggy/src/plugins/gateway/src/java/org/jivesoftware/wildfire/gateway/protocols/oscar/OSCARSession.java | [
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imageList = display.getImageList (bounds.width, bounds.height); | imageList = display.getImageList (style & SWT.RIGHT_TO_LEFT, bounds.width, bounds.height); | int imageIndex (Image image) { if (image == null) return OS.I_IMAGENONE; if (imageList == null) { Rectangle bounds = image.getBounds (); imageList = display.getImageList (bounds.width, bounds.height); int index = imageList.indexOf (image); if (index == -1) index = imageList.add (image); int hImageList = imageList.getHandle (); /* * Bug in Windows. Making any change to an item that * changes the item height of a table while the table * is scrolled can cause the lines to draw incorrectly. * This happens even when the lines are not currently * visible and are shown afterwards. The fix is to * save the top index, scroll to the top of the table * and then restore the original top index. */ int topIndex = getTopIndex (); setRedraw (false); setTopIndex (0); OS.SendMessage (handle, OS.LVM_SETIMAGELIST, OS.LVSIL_SMALL, hImageList); setTopIndex (topIndex); fixCheckboxImageList (); setRedraw (true); return index; } int index = imageList.indexOf (image); if (index != -1) return index; return imageList.add (image);} | 12413 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12413/0be85fb152998df6206f109dfea816fb7584e122/Table.java/buggy/bundles/org.eclipse.swt/Eclipse SWT/win32/org/eclipse/swt/widgets/Table.java | [
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for (String name: params.keySet()) | for (String name: porder) | String parseSignal(Element signal, Set<String> imports, Map<StructStruct, String> structs, Set<String> anns) throws DBusException { Map<String, String> params = new HashMap<String, String>(); char defaultname = 'a'; imports.add("org.freedesktop.dbus.DBusSignal"); imports.add("org.freedesktop.dbus.DBusException"); String annotations = ""; for (Node a: new IterableNodeList(signal.getChildNodes())) { if (Node.ELEMENT_NODE != a.getNodeType()) continue; checkNode(a, "arg", "annotation"); if ("annotation".equals(a.getNodeName())) annotations += parseAnnotation((Element) a, imports, anns); else { Element arg = (Element) a; String type = DBusConnection.getJavaType(arg.getAttribute("type"), imports, structs, false, false); String name = arg.getAttribute("name"); if (null == name || "".equals(name)) name = ""+(defaultname++); params.put(name, type); } } String out = ""; out += annotations; out += " public static class "+signal.getAttribute("name"); out += " extends DBusSignal\n {\n"; for (String name: params.keySet()) out += " public final "+params.get(name)+" "+name+";\n"; out += " public "+signal.getAttribute("name")+"(String path"; for (String name: params.keySet()) out += ", "+params.get(name)+" "+name; out += ") throws DBusException\n {\n super(path"; for (String name: params.keySet()) out += ", "+name; out += ");\n"; for (String name: params.keySet()) out += " this."+name+" = "+name+";\n"; out += " }\n"; out += " }\n"; return out; } | 5401 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5401/93775ce55edeeedcd38d58b2a3e72303a01e4a13/CreateInterface.java/clean/org/freedesktop/dbus/CreateInterface.java | [
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int astral = ASTRAL.getCount( ( KoLCharacter.getEffects() ) ); | int astral = ASTRAL.getCount( ( activeEffects ) ); | private void validate( boolean visitedCouncil ) { if ( isValidAdventure ) return; if ( getRequest().getURLString().indexOf( "adventure.php" ) == -1 ) { isValidAdventure = true; return; } if ( adventureName.indexOf( "In Disguise" ) != -1 || adventureName.indexOf( "Cloaca Uniform" ) != -1 || adventureName.indexOf( "Dyspepsi Uniform" ) != -1 ) { int outfitID = EquipmentDatabase.getOutfitID( this ); if ( !EquipmentDatabase.isWearingOutfit( outfitID ) ) { EquipmentDatabase.retrieveOutfit( outfitID ); if ( !KoLmafia.permitsContinue() ) return; (new EquipmentRequest( client, EquipmentDatabase.getOutfit( outfitID ) )).run(); } // If it's the pirate quest in disguise, make sure // you visit the council beforehand. if ( adventureName.indexOf( "Pirate" ) != -1 ) DEFAULT_SHELL.executeLine( "council" ); } // If we're trying to take a trip, make sure it's the right one if ( adventureID.equals( "96" ) || adventureID.equals( "97" ) || adventureID.equals( "98" ) ) { // You must be Half-Astral to go on a trip int astral = ASTRAL.getCount( ( KoLCharacter.getEffects() ) ); if ( astral == 0 ) { DEFAULT_SHELL.executeLine( "use 1 astral mushroom" ); if ( !KoLmafia.permitsContinue() ) { isValidAdventure = false; return; } } // If we haven't selected a trip yet, do so now if ( astral == 5 ) { String choice; if ( adventureID.equals( "96" ) ) choice = "1"; else if ( adventureID.equals( "98" ) ) choice = "2"; else choice = "3"; // Choose the trip StaticEntity.setProperty( "choiceAdventure71", choice ); String name = getAdventureName(); StaticEntity.setProperty( "chosenTrip", name ); // Arm the adventure by running it once // to get the "Journey to the Center of // your Mind" choice. isValidAdventure = true; client.makeRequest( this, 1 ); return; } String chosenTrip = StaticEntity.getProperty( "chosenTrip" ); // If we've already selected a trip, we can't switch if ( !chosenTrip.equals( getAdventureName() ) ) { KoLmafia.updateDisplay( ERROR_STATE, "You're already taking a different trip." ); isValidAdventure = false; return; } isValidAdventure = true; return; } KoLRequest request = null; // The casino is unlocked provided the player // has a casino pass in their inventory. if ( zone.equals( "Casino" ) ) { AdventureDatabase.retrieveItem( "casino pass" ); isValidAdventure = KoLmafia.permitsContinue(); return; } // The island is unlocked provided the player // has a dingy dinghy in their inventory. else if ( zone.equals( "Island" ) ) { if ( KoLCharacter.hasItem( DINGHY, false ) ) AdventureDatabase.retrieveItem( DINGHY ); else { AdventureDatabase.retrieveItem( "dingy planks" ); DEFAULT_SHELL.executeLine( "use dinghy plans" ); } isValidAdventure = KoLmafia.permitsContinue(); return; } // The Castle in the Clouds in the Sky is unlocked provided the // character has either a S.O.C.K. or an intragalactic rowboat else if ( adventureID.equals( "82" ) ) { if ( KoLCharacter.hasItem( SOCK, true ) ) AdventureDatabase.retrieveItem( SOCK ); else AdventureDatabase.retrieveItem( ROWBOAT ); isValidAdventure = KoLmafia.permitsContinue(); return; } // The Hole in the Sky is unlocked provided the player has an // intragalactic rowboat in their inventory. else if ( adventureID.equals( "83" ) ) { AdventureDatabase.retrieveItem( ROWBOAT ); isValidAdventure = KoLmafia.permitsContinue(); return; } // The beanstalk is unlocked when the player // has planted a beanstalk -- but, the zone // needs to be armed first. else if ( adventureID.equals( "81" ) && !KoLCharacter.beanstalkArmed() ) { // If the character has a S.O.C.K. or an intragalactic // rowboat, they can get to the airship if ( KoLCharacter.hasItem( SOCK, false ) || KoLCharacter.hasItem( ROWBOAT, false ) ) { isValidAdventure = true; return; } // Obviate following request by checking accomplishment: // questlog.php?which=3 // "You have planted a Beanstalk in the Nearby Plains." request = new KoLRequest( client, "plains.php" ); request.run(); if ( request.responseText.indexOf( "beanstalk.php" ) == -1 ) { // If not, check to see if the player has an enchanted // bean which can be used. If they don't, then try to // find one through adventuring. if ( !KoLCharacter.hasItem( BEAN, false ) ) { ArrayList temporary = new ArrayList(); temporary.addAll( client.getConditions() ); DEFAULT_SHELL.executeConditionsCommand( "clear" ); DEFAULT_SHELL.executeConditionsCommand( "add enchanted bean" ); DEFAULT_SHELL.executeLine( "adventure * beanbat" ); if ( !client.getConditions().isEmpty() ) { KoLmafia.updateDisplay( ERROR_STATE, "Unable to complete enchanted bean quest." ); client.getConditions().clear(); client.getConditions().addAll( temporary ); return; } client.getConditions().clear(); client.getConditions().addAll( temporary ); } // Now that you've retrieved the bean, ensure that // it is in your inventory, and then use it. Take // advantage of item consumption automatically doing // what's needed in grabbing the item. DEFAULT_SHELL.executeLine( "council" ); DEFAULT_SHELL.executeLine( "use enchanted bean" ); } request = new KoLRequest( client, "beanstalk.php" ); request.run(); KoLCharacter.armBeanstalk(); isValidAdventure = true; return; } else if ( adventureID.equals( "11" ) ) { isValidAdventure = true; return; } // If a zone validation is sufficient, then validate the // zone normally. if ( AdventureDatabase.validateZone( zone, adventureID ) ) { isValidAdventure = true; return; } // If the person has a continuum transfunctioner, then find // some way of equipping it. If they do not have one, then // acquire one then try to equip it. If the person has a two // handed weapon, then report an error. if ( adventureID.equals( "73" ) ) { if ( !KoLCharacter.hasItem( TRANSFUNCTIONER, false ) ) { request = new KoLRequest( client, "town_wrong.php?place=crackpot" ); request.run(); request = new KoLRequest( client, "town_wrong.php?action=crackyes1" ); request.run(); request = new KoLRequest( client, "town_wrong.php?action=crackyes2" ); request.run(); } if ( EquipmentDatabase.getHands( KoLCharacter.getEquipment( KoLCharacter.WEAPON ).getName() ) > 1 ) { KoLmafia.updateDisplay( ERROR_STATE, "You need to free up a hand." ); return; } DEFAULT_SHELL.executeLine( "equip " + TRANSFUNCTIONER.getName() ); isValidAdventure = true; return; } // Attempt to unlock the Degrassi Knoll by visiting Paco. // Though we can unlock the guild quest, sometimes people // don't want to open up the guild store right now. So, // only keep trying until paco is unlocked. if ( adventureID.equals( "10" ) || adventureID.equals( "100" ) ) { client.unlockGuildStore( true ); if ( KoLmafia.permitsContinue() ) validate( true ); return; } // The beach is unlocked provided the player has the meat car // accomplishment and a meatcar in inventory. if ( zone.equals( "Beach" ) ) { // If the beach hasn't been unlocked, then visit Paco // with your meatcar. visitedCouncil = true; AdventureDatabase.retrieveItem( "bitchin' meatcar" ); if ( KoLmafia.permitsContinue() ) { client.unlockGuildStore( true ); isValidAdventure = KoLmafia.permitsContinue(); return; } } // You can unlock pieces of the bat hole by using up to // three different sonars. if ( zone.equals( "BatHole" ) && !visitedCouncil ) { int sonarCount = SONAR.getCount( KoLCharacter.getInventory() ); if ( sonarCount == 0 ) return; DEFAULT_SHELL.executeLine( "use " + Math.min( 3, sonarCount ) + " sonar-in-a-biscuit" ); validate( true ); return; } if ( zone.equals( "McLarge" ) && !visitedCouncil ) { // Obviate following request by checking accomplishment: // questlog.php?which=2 // "You have learned how to hunt Yetis from the L337 // Tr4pz0r." // See if the trapper will give it to us DEFAULT_SHELL.executeLine( "council" ); request = new KoLRequest( client, "trapper.php" ); request.run(); validate( true ); return; } // Check to see if the Knob is unlocked; all areas are // automatically present when this is true. if ( visitedCouncil ) { KoLmafia.updateDisplay( ABORT_STATE, "This adventure is not yet unlocked." ); return; } DEFAULT_SHELL.executeLine( "council" ); validate( true ); } | 50364 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50364/e62c220071db475c697de817376ca4486bbcebd6/KoLAdventure.java/clean/src/net/sourceforge/kolmafia/KoLAdventure.java | [
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void innerUpdate(){ Logger.minor(this, "Update() called"); synchronized(this) { if((result == null) || hasBeenBlown) { Logger.minor(this, "Returning: result="+result+", isAutoUpdateAllowed="+isAutoUpdateAllowed+", hasBeenBlown="+hasBeenBlown); return; } this.revocationDNFCounter = 0; this.finalCheck = true; } System.err.println("Searching for revocation key"); this.queueFetchRevocation(100); synchronized(this) { while(revocationDNFCounter < 3) { System.err.println("Revocation counter: "+revocationDNFCounter); if(this.hasBeenBlown) { Logger.error(this, "The revocation key has been found on the network : blocking auto-update"); return; } try { wait(100*1000); } catch (InterruptedException e) { // Ignore } } } System.err.println("Update in progress"); Logger.normal(this, "Update in progress"); try{ ArrayBucket bucket = (ArrayBucket) result.asBucket(); byte[] data = bucket.toByteArray(); File fRunning = new File("freenet-cvs-snapshot.jar"); File fNew = new File("freenet-cvs-snapshot.jar.new"); boolean nastyRestart = false; if(File.separatorChar != '\\') { // Do nothing. } else { nastyRestart = true; Properties p = WrapperManager.getProperties(); String cp1 = p.getProperty("wrapper.java.classpath.1"); if(cp1.equals("freenet-cvs-snapshot.jar")) { // Cool! } else if(cp1.equals("freenet-cvs-snapshot.jar.new")) { // Swapped; we are running .new File tmp = fRunning; fRunning = fNew; fNew = tmp; } else { cp1 = p.getProperty("wrapper.java.classpath.2"); if(cp1.equals("freenet-cvs-snapshot.jar")) { // Cool! } else if(cp1.equals("freenet-cvs-snapshot.jar.new")) { // Swapped; we are running .new File tmp = fRunning; fRunning = fNew; fNew = tmp; } else { Logger.error(this, "Cannot restart on Windows due to non-standard config file!"); System.err.println("Cannot restart on Windows due to non-standard config file!"); return; } } } fNew.delete(); FileOutputStream fos = new FileOutputStream(fNew); fos.write(data); fos.flush(); fos.close(); System.out.println("################## File written! "+cg.getURI().getSuggestedEdition()+ " " +fNew.getAbsolutePath()); if(!nastyRestart) { // Easy way. if(!fNew.renameTo(fRunning)) { fRunning.delete(); if(!fNew.renameTo(fRunning)) { System.err.println("ERROR renaming the file!"); return; } } } else { // Hard way. if(!WrapperManager.isControlledByNativeWrapper()) { Logger.error(this, "Cannot update because not running under wrapper"); System.err.println("Cannot update because not running under wrapper"); return; } try { File oldConfig = new File("wrapper.conf"); File newConfig = new File("wrapper.conf.new"); FileInputStream fis = new FileInputStream(oldConfig); BufferedInputStream bis = new BufferedInputStream(fis); InputStreamReader isr = new InputStreamReader(bis); BufferedReader br = new BufferedReader(isr); fos = new FileOutputStream(newConfig); OutputStreamWriter osw = new OutputStreamWriter(fos); BufferedWriter bw = new BufferedWriter(osw); String line; boolean succeeded = false; boolean stillSucceeded = false; while((line = br.readLine()) != null) { if(line.equals("wrapper.java.classpath.1="+fRunning.getName())) { bw.write("wrapper.java.classpath.1="+fNew.getName()+"\r\n"); succeeded = true; } else if(line.equals("wrapper.java.classpath.2="+fRunning.getName())) { bw.write("wrapper.java.classpath.2="+fNew.getName()+"\r\n"); succeeded = true; } else { if(line.equals("wrapper.restart.reload_configuration=TRUE")) stillSucceeded = true; bw.write(line+"\r\n"); } } bw.close(); br.close(); if(!succeeded) { System.err.println("Not able to update because of non-standard config"); Logger.error(this, "Not able to update because of non-standard config"); return; } if(!stillSucceeded) { System.err.println("Not able to update because of non-standard or old config, add a line saying \"wrapper.restart.reload_configuration=TRUE\""); Logger.error(this, "Not able to update because of non-standard or old config, add a line saying \"wrapper.restart.reload_configuration=TRUE\""); return; } if(!newConfig.renameTo(oldConfig)) { oldConfig.delete(); if(!newConfig.renameTo(oldConfig)) { System.err.println("Failed to rename over old config: update failed."); Logger.error(this, "Failed to rename over old config: update failed."); return; } } // New config installed. } catch (IOException e) { Logger.error(this, "Not able to update because of I/O error: "+e, e); System.err.println("Not able to update because of I/O error: "+e); } } if(node.getNodeStarter()!=null) { System.err.println("Restarting because of update"); node.getNodeStarter().restart(); } else{ System.out.println("New version has been downloaded: please restart your node!"); node.exit(); } System.err.println("WTF? 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} return result; | } return result; | public CmsProperty readPropertyObject(CmsRequestContext context, CmsResource resource, String key, boolean search) throws CmsException { CmsProperty result = null; CmsDbContext dbc = m_dbContextFactory.getDbContext(context); try { result = m_driverManager.readPropertyObject(dbc, resource, key, search); } catch (Exception e) { dbc.report(null, null, e); } finally { dbc.clear(); } return result; } | 51784 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51784/a7ffa3c192d7068f584b0a3a844b88bdb2d3145a/CmsSecurityManager.java/buggy/src/org/opencms/db/CmsSecurityManager.java | [
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setProperty(null); | private void evaluateExpressions() throws JspException { try { setCookie((String) evalAttr("cookie", getCookie(), String.class)); } catch (NullAttributeException ex) { setCookie(null); } try { setHeader((String) evalAttr("header", getHeader(), String.class)); } catch (NullAttributeException ex) { setHeader(null); } try { setName((String) evalAttr("name", getName(), String.class)); } catch (NullAttributeException ex) { setName(null); } try { setParameter((String) evalAttr("parameter", getParameter(), String.class)); } catch (NullAttributeException ex) { setParameter(null); } try { setProperty((String) evalAttr("property", getProperty(), String.class)); } catch (NullAttributeException ex) { setProperty(null); } try { setRole((String) evalAttr("role", getRole(), String.class)); } catch (NullAttributeException ex) { setRole(null); } try { setScope((String) evalAttr("scope", getScope(), String.class)); } catch (NullAttributeException ex) { setScope(null); } try { setUser((String) evalAttr("user", getUser(), String.class)); } catch (NullAttributeException ex) { setUser(null); } } | 54704 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54704/db064e19656421b94aaf753550935d95f44bd5f9/ELPresentTag.java/buggy/contrib/struts-el/src/share/org/apache/strutsel/taglib/logic/ELPresentTag.java | [
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private void setControlsEnabled( boolean b ) { typeChoicer.setEnabled( b ); cPlacesChoice.setEnabled( b ); cUseSep.setEnabled( b ); cSymbolChoice.setEnabled( b ); cSymPosChoice.setEnabled( b ); if ( b ) { if ( cSymbolChoice.getSelectionIndex( ) == 0 ) { cSymPosChoice.setEnabled( false ); } } cNegNumChoice.setEnabled( b ); fPlacesChoice.setEnabled( b ); fUseSep.setEnabled( b ); // fUseZero.setEnabled( b ); fNegNumChoice.setEnabled( b ); pPlacesChoice.setEnabled( b ); pUseSep.setEnabled( b ); // pUseZero.setEnabled( b ); pSymPosChoice.setEnabled( b ); pNegNumChoice.setEnabled( b ); sPlacesChoice.setEnabled( b ); formatCodeBox.setEnabled( b ); previewTextBox.setEnabled( b ); table.setEnabled( b ); } | 15160 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/15160/859da21753cbcccb18462d5dbec32f4394c78014/FormatNumberPage.java/buggy/UI/org.eclipse.birt.report.designer.ui/src/org/eclipse/birt/report/designer/internal/ui/dialogs/FormatNumberPage.java | [
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setListForWhiteSelection(treeElement); listViewer.setAllChecked(true); | l.checkStateChanged(event); | public void run() { setListForWhiteSelection(treeElement); listViewer.setAllChecked(true); } | 57470 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57470/75cf57f2af2f39e062e4b2d7f104f731ee34bcf7/ResourceTreeAndListGroup.java/buggy/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/internal/dialogs/ResourceTreeAndListGroup.java | [
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root.notify(); | lockObject.notify(); | protected boolean exitAllowed() { synchronized(root) { if (updateNeeded) { nextUpdate = System.currentTimeMillis(); root.notify(); while (updateNeeded) { try { root.wait(); } catch (InterruptedException ie) { } } } } return true; } | 9368 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/9368/39f7bd9e09e0ba07583e16da6aa9f9f684e1d7d4/Organizer.java/buggy/csmart/src/org/cougaar/tools/csmart/ui/viewer/Organizer.java | [
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if (fDocumentTypeIndex == -1) { fDocumentTypeIndex = fDeferredDocumentImpl.createDocumentType(elementQName.rawname, -1, -1); fDeferredDocumentImpl.appendChild(0, fDocumentTypeIndex); } | public void startElement(QName elementQName, XMLAttrList xmlAttrList, int attrListIndex) throws Exception { // deferred expansion if (fDeferredDocumentImpl != null) { int element = fDeferredDocumentImpl.createElement(elementQName.rawname, elementQName.uri, xmlAttrList, attrListIndex); fDeferredDocumentImpl.appendChild(fCurrentNodeIndex, element); fCurrentNodeIndex = element; fWithinElement = true; // identifier registration int index = xmlAttrList.getFirstAttr(attrListIndex); while (index != -1) { if (xmlAttrList.getAttType(index) == fStringPool.addSymbol("ID")) { int nameIndex = xmlAttrList.getAttValue(index); fDeferredDocumentImpl.putIdentifier(nameIndex, element); } index = xmlAttrList.getNextAttr(index); } // copy schema grammar, if needed if (!fSeenRootElement) { fSeenRootElement = true; if (fGrammarAccess) { // REVISIT: How do we know which grammar is in use? //Document schemaDocument = fValidator.getSchemaDocument(); if (fGrammarResolver.size() > 0) { Enumeration schemas = fGrammarResolver.nameSpaceKeys(); Document schemaDocument = fGrammarResolver.getGrammar((String)schemas.nextElement()).getGrammarDocument(); if (schemaDocument != null) { if (fDocumentTypeIndex == -1) { fDocumentTypeIndex = fDeferredDocumentImpl.createDocumentType(elementQName.rawname, -1, -1); fDeferredDocumentImpl.appendChild(0, fDocumentTypeIndex); } Element schema = schemaDocument.getDocumentElement(); copyInto(schema, fDocumentTypeIndex); } } } } } // full expansion else { boolean nsEnabled = false; try { nsEnabled = getNamespaces(); } catch (SAXException s) {} String elementName = fStringPool.toString(elementQName.rawname); Element e; if (nsEnabled) { e = fDocument.createElementNS( // REVISIT: Make sure uri is filled in by caller. fStringPool.toString(elementQName.uri), fStringPool.toString(elementQName.localpart) ); } else { e = fDocument.createElement(elementName); } int attrHandle = xmlAttrList.getFirstAttr(attrListIndex); while (attrHandle != -1) { int attName = xmlAttrList.getAttrName(attrHandle); String attrName = fStringPool.toString(attName); String attrValue = fStringPool.toString(xmlAttrList.getAttValue(attrHandle)); if (nsEnabled) { int nsURIIndex = xmlAttrList.getAttrURI(attrHandle); String namespaceURI = fStringPool.toString(nsURIIndex); // DOM Level 2 wants all namespace declaration attributes // to be bound to "http://www.w3.org/2000/xmlns/" // So as long as the XML parser doesn't do it, it needs to // done here. int prefixIndex = xmlAttrList.getAttrPrefix(attrHandle); String prefix = fStringPool.toString(prefixIndex); if (namespaceURI == null) { if (prefix != null) { if (prefix.equals("xmlns")) { namespaceURI = "http://www.w3.org/2000/xmlns/"; } } else if (attrName.equals("xmlns")) { namespaceURI = "http://www.w3.org/2000/xmlns/"; } } e.setAttributeNS(namespaceURI, attrName, attrValue); } else { e.setAttribute(attrName, attrValue); } if (!xmlAttrList.isSpecified(attrHandle)) { ((AttrImpl)e.getAttributeNode(attrName)) .setSpecified(false); } attrHandle = xmlAttrList.getNextAttr(attrHandle); } fCurrentElementNode.appendChild(e); fCurrentElementNode = e; fWithinElement = true; // identifier registration if (fDocumentImpl != null) { int index = xmlAttrList.getFirstAttr(attrListIndex); while (index != -1) { if (xmlAttrList.getAttType(index) == fStringPool.addSymbol("ID")) { String name = fStringPool.toString(xmlAttrList.getAttValue(index)); fDocumentImpl.putIdentifier(name, e); } index = xmlAttrList.getNextAttr(index); } } xmlAttrList.releaseAttrList(attrListIndex); // copy schema grammar, if needed if (!fSeenRootElement) { fSeenRootElement = true; if (fDocumentImpl != null && fGrammarAccess) { //Document schemaDocument = fValidator.getSchemaDocument(); if (fGrammarResolver.size() > 0) { Enumeration schemas = fGrammarResolver.nameSpaceKeys(); Document schemaDocument = fGrammarResolver.getGrammar((String)schemas.nextElement()).getGrammarDocument(); if (schemaDocument != null) { if (fDocumentType == null) { String rootName = elementName; String systemId = ""; // REVISIT: How do we get this value? -Ac String publicId = ""; // REVISIT: How do we get this value? -Ac fDocumentType = fDocumentImpl.createDocumentType(rootName, publicId, systemId); fDocument.appendChild(fDocumentType); } Element schema = schemaDocument.getDocumentElement(); XUtil.copyInto(schema, fDocumentType); } } } } } } // startElement(QName,XMLAttrList,int) | 1831 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1831/35d811924c031b13a4aba086f815be0fe1736e1b/DOMParser.java/clean/src/org/apache/xerces/parsers/DOMParser.java | [
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if(pos[k] < pos[k-1]) { | if(((SortingHelper)sortHelpers.get(k)).compareTo(sortHelpers.get(k-1)) < 0) { | void prepareMarkerInput(File infile, String[][] hapmapGoodies) throws IOException, HaploViewException{ //this method is called to gather data about the markers used. //It is assumed that the input file is two columns, the first being //the name and the second the absolute position. the maxdist is //used to determine beyond what distance comparisons will not be //made. if the infile param is null, loads up "dummy info" for //situation where no info file exists //An optional third column is supported which is designed to hold //association study data. If there is a third column there will be //a visual indicator in the D' display that there is additional data //and the detailed data can be viewed with a mouse press. Vector names = new Vector(); HashSet dupCheck = new HashSet(); Vector positions = new Vector(); Vector extras = new Vector(); dupsToBeFlagged = false; dupNames = false; try{ if (infile != null){ if (infile.length() < 1){ throw new HaploViewException("Info file is empty or does not exist: " + infile.getName()); } String currentLine; long prevloc = -1000000000; //read the input file: BufferedReader in = new BufferedReader(new FileReader(infile)); int lineCount = 0; while ((currentLine = in.readLine()) != null){ StringTokenizer st = new StringTokenizer(currentLine); if (st.countTokens() > 1){ lineCount++; }else if (st.countTokens() == 1){ //complain if only one field found throw new HaploViewException("Info file format error on line "+lineCount+ ":\n Info file must be of format: <markername> <markerposition>"); }else{ //skip blank lines continue; } String name = st.nextToken(); String l = st.nextToken(); String extra = null; if (st.hasMoreTokens()) extra = st.nextToken(); long loc; try{ loc = Long.parseLong(l); }catch (NumberFormatException nfe){ throw new HaploViewException("Info file format error on line "+lineCount+ ":\n\"" + l + "\" should be of type long." + "\n Info file must be of format: <markername> <markerposition>"); } //basically if anyone is crazy enough to load a dataset, then go back and load //an out-of-order info file we tell them to bugger off and start over. if (loc < prevloc && Chromosome.markers != null){ throw new HaploViewException("Info file out of order with preloaded dataset:\n"+ name + "\nPlease reload data file and info file together."); } prevloc = loc; if (names.contains(name)){ dupCheck.add(name); } names.add(name); positions.add(l); extras.add(extra); } //check for duplicate names Iterator ditr = dupCheck.iterator(); while (ditr.hasNext()){ String n = (String) ditr.next(); int numdups = 1; for (int i = 0; i < names.size(); i++){ if (names.get(i).equals(n)){ //leave the first instance of the duplicate name the same if (numdups > 1){ String newName = n + "." + numdups; while (names.contains(newName)){ numdups++; newName = n + "." + numdups; } names.setElementAt(newName,i); dupNames = true; } numdups++; } } } if (lineCount > Chromosome.getUnfilteredSize()){ throw(new HaploViewException("Info file error:\nMarker number mismatch: too many\nmarkers in info file compared to data file.")); } if (lineCount < Chromosome.getUnfilteredSize()){ throw(new HaploViewException("Info file error:\nMarker number mismatch: too few\nmarkers in info file compared to data file.")); } infoKnown=true; } if (hapmapGoodies != null){ //we know some stuff from the hapmap so we'll add it here for (int x=0; x < hapmapGoodies.length; x++){ names.add(hapmapGoodies[x][0]); positions.add(hapmapGoodies[x][1]); extras.add(null); } infoKnown = true; } else if (infile != null){ //we only sort if we read the info from an info file. if //it is from a hapmap file, then the markers were already sorted //when they were read in (in class Pedfile). int numLines = names.size(); Hashtable sortHelp = new Hashtable(numLines-1,1.0f); long[] pos = new long[numLines]; boolean needSort = false; //this loop stores the positions of each marker in an array (pos[]) in the order they appear in the file. //it also creates a hashtable with the positions as keys and their index in the pos[] array as the value for (int k = 0; k < (numLines); k++){ pos[k] = new Long((String)(positions.get(k))).longValue(); sortHelp.put(new Long(pos[k]),new Integer(k)); } //loop through and check if any markers are out of order for (int k = 1; k < (numLines); k++){ if(pos[k] < pos[k-1]) { needSort = true; break; } } //if any were out of order, then we need to put them in order if(needSort) { //sort the positions Arrays.sort(pos); Vector newNames = new Vector(); Vector newExtras = new Vector(); Vector newPositions = new Vector(); int[] realPos = new int[numLines]; //reorder the vectors names and extras so that they have the same order as the sorted markers for (int i = 0; i < pos.length; i++){ realPos[i] = ((Integer)(sortHelp.get(new Long(pos[i])))).intValue(); newNames.add(names.get(realPos[i])); newPositions.add(positions.get(realPos[i])); newExtras.add(extras.get(realPos[i])); } names = newNames; extras = newExtras; positions = newPositions; byte[] tempGenotype = new byte[pos.length]; //now we reorder all the individuals genotypes according to the sorted marker order for(int j=0;j<chromosomes.size();j++){ Chromosome tempChrom = (Chromosome)chromosomes.elementAt(j); for(int i =0;i<pos.length;i++){ tempGenotype[i] = tempChrom.getUnfilteredGenotype(realPos[i]); } for(int i=0;i<pos.length;i++) { tempChrom.setGenotype(tempGenotype[i],i); } } //sort pedfile objects //todo: this should really be done before pedfile is subjected to any processing. //todo: that would require altering some order of operations in dealing with inputs Vector unsortedRes = pedFile.getResults(); Vector sortedRes = new Vector(); for (int i = 0; i < realPos.length; i++){ sortedRes.add(unsortedRes.elementAt(realPos[i])); } pedFile.setResults(sortedRes); Vector o = pedFile.getAllIndividuals(); for (int i = 0; i < o.size(); i++){ Individual ind = (Individual) o.get(i); Vector unsortedMarkers = ind.getMarkers(); Vector sortedMarkers = new Vector(); for (int j = 0; j < unsortedMarkers.size(); j++){ sortedMarkers.add(unsortedMarkers.elementAt(realPos[j])); } ind.setMarkers(sortedMarkers); } } } }catch (HaploViewException e){ throw(e); }finally{ double numChroms = chromosomes.size(); Vector markerInfo = new Vector(); double[] numBadGenotypes = new double[Chromosome.getUnfilteredSize()]; percentBadGenotypes = new double[Chromosome.getUnfilteredSize()]; Vector results = null; if (pedFile != null){ results = pedFile.getResults(); } long prevPosition = Long.MIN_VALUE; SNP prevMarker = null; MarkerResult pmr = null; for (int i = 0; i < Chromosome.getUnfilteredSize(); i++){ MarkerResult mr = null; if (results != null){ mr = (MarkerResult)results.elementAt(i); } //to compute minor/major alleles, browse chrom list and count instances of each allele byte a1 = 0; byte a2 = 0; double numa1 = 0; double numa2 = 0; for (int j = 0; j < chromosomes.size(); j++){ //if there is a data point for this marker on this chromosome byte thisAllele = ((Chromosome)chromosomes.elementAt(j)).getUnfilteredGenotype(i); if (!(thisAllele == 0)){ if (thisAllele >= 5){ numa1+=0.5; numa2+=0.5; if (thisAllele < 9){ if (a1==0){ a1 = (byte)(thisAllele-4); }else if (a2 == 0){ if (!(thisAllele-4 == a1)){ a2 = (byte)(thisAllele-4); } } } }else if (a1 == 0){ a1 = thisAllele; numa1++; }else if (thisAllele == a1){ numa1++; }else{ numa2++; a2 = thisAllele; } } else { numBadGenotypes[i]++; } } if (numa2 > numa1){ byte temp = a1; double tempnum = numa1; numa1 = numa2; a1 = a2; numa2 = tempnum; a2 = temp; } double maf; if (mr != null){ maf = Math.rint(mr.getMAF()*100.0)/100.0; }else{ maf = Math.rint(100.0*(numa2/(numa1+numa2)))/100.0; } if (infoKnown){ long pos = Long.parseLong((String)positions.elementAt(i)); SNP thisMarker = (new SNP((String)names.elementAt(i), pos, maf, a1, a2, (String)extras.elementAt(i))); markerInfo.add(thisMarker); if (mr != null){ double genoPC = mr.getGenoPercent(); //check to make sure adjacent SNPs do not have identical positions if (prevPosition != Long.MIN_VALUE){ //only do this for markers 2..N, since we're comparing to the previous location if (pos == prevPosition){ dupsToBeFlagged = true; if (genoPC >= pmr.getGenoPercent()){ //use this one because it has more genotypes thisMarker.setDup(1); prevMarker.setDup(2); }else{ //use the other one because it has more genotypes thisMarker.setDup(2); prevMarker.setDup(1); } } } prevPosition = pos; prevMarker = thisMarker; pmr = mr; } }else{ markerInfo.add(new SNP("Marker " + String.valueOf(i+1), (i*4000), maf,a1,a2)); } percentBadGenotypes[i] = numBadGenotypes[i]/numChroms; } Chromosome.markers = markerInfo; } } | 51222 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51222/9c640e0f897d69833434f8cbf19bd8728d69ec6e/HaploData.java/clean/edu/mit/wi/haploview/HaploData.java | [
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if (jj_scan_token(MINUSASSIGN)) return true; | if (jj_scan_token(SC_AND)) return true; if (jj_3R_207()) return true; | final private boolean jj_3R_242() { if (jj_scan_token(MINUSASSIGN)) return true; return false; } | 41673 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/41673/2c4cc3303f04cdb3883f34b25cfe841b0bdf1fb5/JavaParser.java/clean/pmd/src/net/sourceforge/pmd/ast/JavaParser.java | [
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throw new IllegalArgumentException("value may not be less then 0"); | throw new IllegalArgumentException("value may not be less than 0"); | public NumberOfInterveningJobs(int value) { super(value); if (value < 0) throw new IllegalArgumentException("value may not be less then 0"); } | 45163 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45163/f6df144a51f6df4ab5f69c781f796e6a912ade6a/NumberOfInterveningJobs.java/buggy/libjava/javax/print/attribute/standard/NumberOfInterveningJobs.java | [
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if (!ourIsEnabled) { return false; } if (isSafeModeDefault()) { return !Boolean.getBoolean("javasvn.generator.enabled"); } if (System.getProperty("javasvn.generator.enabled") == null) { return false; } return !Boolean.getBoolean("javasvn.generator.enabled"); } | if (ourLogger == null) { return false; } if (isSafeModeDefault()) { return !Boolean.getBoolean("javasvn.generator.enabled"); } if (System.getProperty("javasvn.generator.enabled") == null) { return false; } return !Boolean.getBoolean("javasvn.generator.enabled"); } | public static boolean isGeneratorDisabled() { if (!ourIsEnabled) { return false; } if (isSafeModeDefault()) { // have to enable explicitly return !Boolean.getBoolean("javasvn.generator.enabled"); } if (System.getProperty("javasvn.generator.enabled") == null) { return false; } return !Boolean.getBoolean("javasvn.generator.enabled"); } | 5695 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5695/6219d45b96ea8caf1106d29bd53371ebdeedac15/DebugLog.java/buggy/javasvn/src/org/tmatesoft/svn/util/DebugLog.java | [
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private boolean isRelated( ACITuple tuple, OperationScope scope, Name userName, Name entryName, String attrId, Object attrValue, Attributes entry ) throws NamingException, InternalError { for( Iterator i = tuple.getProtectedItems().iterator(); i.hasNext(); ) { ProtectedItem item = ( ProtectedItem ) i.next(); if( item == ProtectedItem.ENTRY ) { if( scope == OperationScope.ENTRY ) { return true; } } else if( item == ProtectedItem.ALL_USER_ATTRIBUTE_TYPES ) { if( scope != OperationScope.ATTRIBUTE_TYPE && scope != OperationScope.ATTRIBUTE_TYPE_AND_VALUE ) { continue; } if( isUserAttribute( attrId ) ) { return true; } } else if( item == ProtectedItem.ALL_USER_ATTRIBUTE_TYPES_AND_VALUES ) { if( scope != OperationScope.ATTRIBUTE_TYPE && scope != OperationScope.ATTRIBUTE_TYPE_AND_VALUE ) { continue; } if( isUserAttribute( attrId ) ) { return true; } } else if( item instanceof ProtectedItem.AllAttributeValues ) { if( scope != OperationScope.ATTRIBUTE_TYPE && scope != OperationScope.ATTRIBUTE_TYPE_AND_VALUE ) { continue; } ProtectedItem.AllAttributeValues aav = ( ProtectedItem.AllAttributeValues ) item; for( Iterator j = aav.iterator(); j.hasNext(); ) { if( attrId.equalsIgnoreCase( ( String ) j.next() ) ) { return true; } } } else if( item instanceof ProtectedItem.AttributeType ) { if( scope != OperationScope.ATTRIBUTE_TYPE && scope != OperationScope.ATTRIBUTE_TYPE_AND_VALUE ) { continue; } ProtectedItem.AttributeType at = ( ProtectedItem.AttributeType ) item; for( Iterator j = at.iterator(); j.hasNext(); ) { if( attrId.equalsIgnoreCase( ( String ) j.next() ) ) { return true; } } } else if( item instanceof ProtectedItem.AttributeValue ) { if( scope != OperationScope.ATTRIBUTE_TYPE_AND_VALUE ) { continue; } ProtectedItem.AttributeValue av = ( ProtectedItem.AttributeValue ) item; for( Iterator j = av.iterator(); j.hasNext(); ) { Attribute attr = ( Attribute ) j.next(); if( attrId.equalsIgnoreCase( attr.getID() ) && attr.contains( attrValue ) ) { return true; } } } else if( item instanceof ProtectedItem.Classes ) { ProtectedItem.Classes c = ( ProtectedItem.Classes ) item; if( refinementEvaluator.evaluate( c.getClasses(), entry.get( "objectClass" ) ) ) { return true; } } else if( item instanceof ProtectedItem.MaxImmSub ) { return true; } else if( item instanceof ProtectedItem.MaxValueCount ) { if( scope != OperationScope.ATTRIBUTE_TYPE_AND_VALUE ) { continue; } ProtectedItem.MaxValueCount mvc = ( ProtectedItem.MaxValueCount ) item; for( Iterator j = mvc.iterator(); j.hasNext(); ) { MaxValueCountItem mvcItem = ( MaxValueCountItem ) j.next(); if( attrId.equalsIgnoreCase( mvcItem.getAttributeType() ) ) { return true; } } } else if( item instanceof ProtectedItem.RangeOfValues ) { ProtectedItem.RangeOfValues rov = ( ProtectedItem.RangeOfValues ) item; if( entryEvaluator.evaluate( rov.getFilter(), entryName.toString(), entry ) ) { return true; } } else if( item instanceof ProtectedItem.RestrictedBy ) { if( scope != OperationScope.ATTRIBUTE_TYPE_AND_VALUE ) { continue; } ProtectedItem.RestrictedBy rb = ( ProtectedItem.RestrictedBy ) item; for( Iterator j = rb.iterator(); j.hasNext(); ) { RestrictedByItem rbItem = ( RestrictedByItem ) j.next(); if( attrId.equalsIgnoreCase( rbItem.getAttributeType() ) ) { return true; } } } else if( item instanceof ProtectedItem.SelfValue ) { if( scope != OperationScope.ATTRIBUTE_TYPE_AND_VALUE && scope != OperationScope.ATTRIBUTE_TYPE ) { continue; } ProtectedItem.SelfValue sv = ( ProtectedItem.SelfValue ) item; for( Iterator j = sv.iterator(); j.hasNext(); ) { String svItem = String.valueOf( j.next() ); if( svItem.equalsIgnoreCase( attrId ) ) { Attribute attr = entry.get( attrId ); if( attr != null && ( attr.contains( userName ) || attr.contains( userName.toString() ) ) ) { return true; } } } } else { throw new InternalError( "Unexpected protectedItem: " + item.getClass().getName() ); } } return false; } | 10677 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/10677/b94e3a1b9e6127d9b400a876f96637dc4a790ad4/RelatedProtectedItemFilter.java/buggy/core/src/main/java/org/apache/ldap/server/authz/support/RelatedProtectedItemFilter.java | [
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"Item X25", null); | null, null, "Item X25", null, null); | public void createContributionItems(IMenuService menuService, List additions) { CommandContributionItem item = new CommandContributionItem( "org.eclipse.ui.tests.menus.itemX25", "org.eclipse.ui.tests.menus.updateWorld", null, null, "Item X25", null); additions.add(item); WidgetContributionItem widget = new WidgetContributionItem( "org.eclipse.ui.tests.menus.itemX26") { public IWorkbenchWidget createWidget() { return new TextWidget(); } }; additions.add(widget); } | 58148 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/58148/bfd6eb25a2e56f373b64dbce6d194d946bbcc597/TestPlugin.java/buggy/tests/org.eclipse.ui.tests/Eclipse UI Tests/org/eclipse/ui/tests/TestPlugin.java | [
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if (VM.VerifyAssertions) VM._assert(declaringClass.isInstantiated()); | if (VM.VerifyAssertions) VM._assert(getDeclaringClass().isInstantiated()); | public final synchronized void invalidateCompiledMethod(VM_CompiledMethod cm) { if (VM.VerifyAssertions) VM._assert(declaringClass.isInstantiated()); if (currentCompiledMethod == cm) { replaceCompiledMethod(null); } } | 4011 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4011/9f7e15228c35a04a33dad4f1d51fe26cef5732fc/VM_Method.java/buggy/rvm/src/vm/classLoader/VM_Method.java | [
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return new YamahaDX7PerformanceEditor(p); } | return new YamahaDX7PerformanceEditor(p); } | public JInternalFrame editPatch(Patch p) { if ( ((YamahaDX7Device)(PatchEdit.appConfig.getDevice(getDeviceNum()))).getDX7sPBPflag()==1 ) { // make Sys Info available DX7ParamChanges.mkSysInfoAvail(port, (byte)(channel+0x10)); } else { if ( ((YamahaDX7Device)(PatchEdit.appConfig.getDevice(getDeviceNum()))).getTipsMsgFlag()==1 ) // Information JOptionPane.showMessageDialog(PatchEdit.instance, getDriverName()+"Driver:"+ DX7Strings.PERFORMANCE_EDITOR_STRING, getDriverName()+"Driver", JOptionPane.INFORMATION_MESSAGE); } return new YamahaDX7PerformanceEditor(p); } | 7591 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7591/4257a12add320e7386d2e846e2e34d26914720ec/YamahaDX7PerformanceSingleDriver.java/buggy/JSynthLib/synthdrivers/YamahaDX7/YamahaDX7PerformanceSingleDriver.java | [
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((MonotonePageResource)pr).reusePages(pages); | ((MonotonePageResource) pr).reusePages(pages); | public void reusePages(int pages) { ((MonotonePageResource)pr).reusePages(pages); } | 49871 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49871/57a34fa3e6e607d84b46e06082997a4771a25a85/MarkCompactSpace.java/buggy/MMTk/src/org/mmtk/policy/MarkCompactSpace.java | [
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status = code; | status = code; | private void finish(int code, PeerNode next) { Logger.minor(this, "Finished: "+code+" on "+this, new Exception("debug")); setStatusTime = System.currentTimeMillis(); synchronized(this) { if(status != NOT_FINISHED) throw new IllegalStateException("finish() called with "+code+" when was already "+status); if((code == ROUTE_NOT_FOUND) && !sentRequest) code = ROUTE_REALLY_NOT_FOUND; status = code; notifyAll(); Logger.minor(this, "Set status code: "+getStatusString()+" on "+uid); } // Now wait for transfers, or for downstream transfer notifications. if(cw != null) { while(!allTransfersCompleted) { try { synchronized (this) { wait(10*1000); } } catch (InterruptedException e) { // Try again } } } else { Logger.minor(this, "No completion waiter"); // There weren't any transfers allTransfersCompleted = true; } synchronized (this) { notifyAll(); } Logger.minor(this, "Returning from finish()"); } | 50915 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50915/f37b79d0c8eecfb6beed49bdd3fb7061942b34aa/CHKInsertSender.java/clean/src/freenet/node/CHKInsertSender.java | [
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return HorizontalTextPositionConverter.SINGLETON; | protected Converter getTextPositionConverter() { return HorizontalTextPositionConverter.SINGLETON; } | 6232 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6232/1f1850be471d4b8bfd2f3c50aa61bc39bf91259a/CheckButtonComponent.java/buggy/org.rcfaces.core/src/org/rcfaces/core/component/CheckButtonComponent.java | [
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} | } | static String getLocalDataTypeName (Configuration config, String genericDataTypeName) { String localDataTypeName = null; try { DatabaseMetaData dbmd = config.getConnection().getMetaData(); String dbName = dbmd.getDatabaseProductName(); String dbVersion = dbmd.getDatabaseProductVersion(); String driverName = dbmd.getDriverName(); String driverVersion = dbmd.getDriverVersion(); // Check for a mapping in DbLoader.xml localDataTypeName = config.getMappedDataTypeName(dbName, dbVersion, driverName, driverVersion, genericDataTypeName); if (localDataTypeName != null) return localDataTypeName; if (config.getLocalTypeMap() == null) { config.setLocalTypeMap(new Hashtable()); try { // Find the first local type name matching the type code ResultSet rs = dbmd.getTypeInfo(); try { while (rs.next()) { Integer dbTypeCode = new Integer(rs.getInt("DATA_TYPE")); String dbTypeName = rs.getString("TYPE_NAME"); config.getLocalTypeMap().put(dbTypeCode, dbTypeName); } } finally { rs.close(); } } catch (Exception e) { config.getLog().println("Problem loading Database Meta Data. " + e.getMessage()); e.printStackTrace(config.getLog()); DbLoader.exit(config); } config.setLocalTypeMap(Collections.unmodifiableMap(config.getLocalTypeMap())); } // Find the type code for this generic type name int dataTypeCode = DbUtils.getJavaSqlType(genericDataTypeName); Integer dataTypeCodeObj = new Integer(dataTypeCode); localDataTypeName = (String)config.getLocalTypeMap().get(dataTypeCodeObj); if (localDataTypeName != null) { return localDataTypeName; } // No matching type found, report an error config.getLog().println( "Your database driver, '" + driverName + "', version '" + driverVersion + "', was unable to find a local type name that matches the generic type name, '" + genericDataTypeName + "'."); config.getLog().println( "Please add a mapped type for database '" + dbName + "', version '" + dbVersion + "' inside '" + config.getPropertiesURL() + "' and run this program again."); config.getLog().println("Exiting..."); DbLoader.exit(config); } catch (Exception e) { e.printStackTrace(config.getLog()); DbLoader.exit(config); } return null; } | 24959 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/24959/0c5b6eb515381202f2a56052249f323621a7236c/DbUtils.java/buggy/source/org/jasig/portal/tools/dbloader/DbUtils.java | [
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throw new SecurityException("At least one SignerInfo element MUST be " + "present in a Signature Block (.DSA file)"); | throw new SecurityException(Messages.getString("JarVerifier.14")); | private boolean verifySF(String sigFileName) throws CRLException, CertificateException, ZipException, IOException { log.entering("JarVerifier", "verifySF"); log.finest("About to verify signature of " + sigFileName + "..."); // 1. find the corresponding .DSA file for this .SF file JarEntry dsaEntry = jarFile.getJarEntry(JarUtils.META_INF + sigFileName + JarUtils.DSA_SUFFIX); if (dsaEntry == null) throw new SecurityException("Signature Block missing for " + sigFileName); // 2. read the .DSA file contents as a PKCS7 SignedData InputStream in = jarFile.getInputStream(dsaEntry); PKCS7SignedData pkcs7SignedData = new PKCS7SignedData(in); // 4. get the encrypted digest octet string from the first SignerInfo // this octet string is the digital signature of the .SF file contents Set signerInfos = pkcs7SignedData.getSignerInfos(); if (signerInfos == null || signerInfos.isEmpty()) throw new SecurityException("At least one SignerInfo element MUST be " + "present in a Signature Block (.DSA file)"); SignerInfo signerInfo = (SignerInfo) signerInfos.iterator().next(); byte[] encryptedDigest = signerInfo.getEncryptedDigest(); if (encryptedDigest == null) throw new SecurityException("Missing EncryptedDigest in Signature Block " + "(.DSA file) first SignerInfo element"); log.finest("\n" + Util.dumpString(encryptedDigest, "--- signedSFBytes ")); // 5. get the signer public key Certificate cert = pkcs7SignedData.getCertificates()[0]; PublicKey verifierKey = cert.getPublicKey(); log.finest("--- verifier public key = " + verifierKey); // 6. verify the signature file signature OID digestEncryptionAlgorithmOID = signerInfo.getDigestEncryptionAlgorithmId(); ISignature signatureAlgorithm; ISignatureCodec signatureCodec; if (digestEncryptionAlgorithmOID.equals(Main.DSA_SIGNATURE_OID)) { signatureAlgorithm = new DSSSignature(); signatureCodec = new DSSSignatureX509Codec(); } else { signatureAlgorithm = new RSAPKCS1V1_5Signature(Registry.MD5_HASH); signatureCodec = new RSAPKCS1V1_5SignatureX509Codec(); } Map signatureAttributes = new HashMap(); signatureAttributes.put(ISignature.VERIFIER_KEY, verifierKey); signatureAlgorithm.setupVerify(signatureAttributes); Object herSignature = signatureCodec.decodeSignature(encryptedDigest); // 7. verify the signature file contents JarEntry sfEntry = jarFile.getJarEntry(JarUtils.META_INF + sigFileName + JarUtils.SF_SUFFIX); in = jarFile.getInputStream(sfEntry); byte[] buffer = new byte[2048]; int n; while ((n = in.read(buffer)) != -1) if (n > 0) signatureAlgorithm.update(buffer, 0, n); boolean result = signatureAlgorithm.verify(herSignature); log.info("Signature block [" + sigFileName + "] is " + (result ? "" : "NOT ") + "OK"); log.exiting("JarVerifier", "verifySF", new Boolean(result)); return result; } | 1056 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1056/a0a1b5a96bc35d919f1dc104ff6cc513e7610801/JarVerifier.java/clean/core/src/classpath/tools/gnu/classpath/tools/jarsigner/JarVerifier.java | [
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reference[i] = (byte)(temp / 256); reference[i + 1] = (byte)(temp % 256); | reference[i] = (byte)(temp >> 8); reference[i + 1] = (byte)(temp & 0xFF); | public void scaleBy(int qualityFactor) { int qFactor = qualityFactor; if (qFactor <= 0) { qFactor = 1; } if (qFactor > 100) { qFactor = 100; } if (qFactor < 50) { qFactor = 5000 / qFactor; } else { qFactor = 200 - (qFactor * 2); } int totalLength = getSegmentLength() - 2; int ofs = 4; while (totalLength > 64) {// int tq = (reference[ofs] & 0xFF) % 16; int pq = (reference[ofs] & 0xFF) / 16; if (pq == 0) { for (int i = ofs + 1; i <= ofs + 64; i++) { int temp = ((reference[i] & 0xFF) * qFactor + 50) / 100; if (temp <= 0) temp = 1; if (temp > 255) temp = 255; reference[i] = (byte)temp; } ofs += 65; totalLength -= 65; } else { for (int i = ofs + 1; i <= ofs + 128; i += 2) { int temp = (((reference[i] & 0xFF) * 256 + (reference[i + 1] & 0xFF)) * qFactor + 50) / 100; if (temp <= 0) temp = 1; if (temp > 32767) temp = 32767; reference[i] = (byte)(temp / 256); reference[i + 1] = (byte)(temp % 256); } ofs += 129; totalLength -= 129; } }} | 12413 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12413/54678335fd7dde7fcf31de28ef4e8a4cec037256/JPEGQuantizationTable.java/buggy/bundles/org.eclipse.swt/Eclipse SWT/common/org/eclipse/swt/internal/image/JPEGQuantizationTable.java | [
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throw new java.lang.IllegalArgumentException("Invalid winding rule value"); | throw new java.lang.IllegalArgumentException(Messages.getString("awt.209")); | public void setWindingRule(int rule) { if (rule != WIND_EVEN_ODD && rule != WIND_NON_ZERO) { throw new java.lang.IllegalArgumentException("Invalid winding rule value"); } this.rule = rule; } | 54769 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54769/1380f0b7d7529273757b8c60cba9603d41c15f4d/GeneralPath.java/clean/modules/awt/src/main/java/common/java/awt/geom/GeneralPath.java | [
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public Grammar parse( String url ) | public Grammar parse( InputSource source ) | public Grammar parse( String url ) throws SAXException, ParserConfigurationException, java.io.IOException { return _loadSchema(url); } | 45720 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45720/54f92a3d0714b4ce3e968b61219931a4884a19b5/GrammarLoader.java/buggy/msv/src/com/sun/msv/reader/util/GrammarLoader.java | [
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private IQ processSetPacket(IQ packet) { List<User> users = new ArrayList<User>(); Element incomingForm = packet.getChildElement(); boolean isDataFormQuery = (incomingForm.element(QName.get("x", "jabber:x:data")) != null); Hashtable<String, String> searchList = extractSearchQuery(incomingForm); Enumeration<String> searchIter = searchList.keys(); while (searchIter.hasMoreElements()) { String field = (String) searchIter.nextElement(); String query = (String) searchList.get(field); Collection<User> foundUsers = new ArrayList<User>(); if (userManager != null) { if (query.length() > 0 && !query.equals("jabber:iq:search")) { foundUsers.addAll(userManager.findUsers(new HashSet<String>( Arrays.asList((field))), query)); } } else { foundUsers.addAll(findUsers(field, query)); } // Filter out all duplicate users. for (User user : foundUsers) { if (!users.contains(user)) { users.add(user); } } } if (isDataFormQuery) { return replyDataFormResult(users, packet); } else { return replyNonDataFormResult(users, packet); } } | 6312 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6312/33741004c1e03e7a2253d7fdd5cc2b5a1293fb44/SearchPlugin.java/buggy/src/plugins/search/src/java/org/jivesoftware/messenger/plugin/SearchPlugin.java | [
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else if (code == 416) | else if (code == 416) { Iterator iter = _rfd.getAvailableRanges().getAllIntervals(); while(iter.hasNext()) { Interval next = (Interval)iter.next(); if(_requestedInterval.isSubrange(next)) throw new ProblemReadingHeaderException("Bad ranges sent"); } | private void readHeaders() throws IOException { if (_byteReader == null) throw new ReaderIsNullException(); // Read the response code from the first line and check for any errors String str = _byteReader.readLine(); if (str==null || str.equals("")) throw new IOException(); if(!CommonUtils.isJava118()) BandwidthStat.HTTP_HEADER_DOWNSTREAM_BANDWIDTH.addData(str.length()); int code=parseHTTPCode(str, _rfd); //Note: According to the specification there are 5 headers, LimeWire //ignores 2 of them - queue length, and maxUploadSlots. int[] refQueueInfo = {-1,-1,-1}; //Now read each header... while (true) { str = _byteReader.readLine(); if (str==null || str.equals("")) break; if(!CommonUtils.isJava118()) BandwidthStat.HTTP_HEADER_DOWNSTREAM_BANDWIDTH.addData(str.length()); //As of LimeWire 1.9, we ignore the "Content-length" header for //handling normal download flow. The Content-Length is only //used for reading/discarding some HTTP body messages. //For "Content-Range" headers, we store what the remote side is //going to give us. Users should examine the interval and //update external structures appropriately. if (str.toUpperCase().startsWith("CONTENT-RANGE:")) { Interval responseRange = parseContentRange(str); int low = responseRange.low; int high = responseRange.high + 1; // Make sure that the range they gave us is a subrange // of what we wanted in the first place. if(low < _initialReadingPoint || high > _initialReadingPoint + _amountToRead) throw new ProblemReadingHeaderException( "invalid subrange given. wanted low: " + _initialReadingPoint + ", high: " + (_initialReadingPoint + _amountToRead - 1) + "... given low: " + low + ", high: " + high); _initialReadingPoint = low; _amountToRead = high - low; } else if(HTTPHeaderName.CONTENT_LENGTH.matchesStartOfString(str)) _contentLength = readContentLength(str); else if(HTTPHeaderName.CONTENT_URN.matchesStartOfString(str)) checkContentUrnHeader(str, _rfd.getSHA1Urn()); else if(HTTPHeaderName.GNUTELLA_CONTENT_URN.matchesStartOfString(str)) checkContentUrnHeader(str, _rfd.getSHA1Urn()); else if(HTTPHeaderName.ALT_LOCATION.matchesStartOfString(str)) readAlternateLocations(str); else if(HTTPHeaderName.QUEUE.matchesStartOfString(str)) parseQueueHeaders(str, refQueueInfo); else if (HTTPHeaderName.SERVER.matchesStartOfString(str)) _server = readServer(str); else if (HTTPHeaderName.AVAILABLE_RANGES.matchesStartOfString(str)) parseAvailableRangesHeader(str, _rfd); else if (HTTPHeaderName.RETRY_AFTER.matchesStartOfString(str)) parseRetryAfterHeader(str, _rfd); else if (HTTPHeaderName.CREATION_TIME.matchesStartOfString(str)) parseCreationTimeHeader(str, _rfd); else if (HTTPHeaderName.FEATURES.matchesStartOfString(str)) parseFeatureHeader(str); else if (HTTPHeaderName.THEX_URI.matchesStartOfString(str)) parseTHEXHeader(str); } //Accept any 2xx's, but reject other codes. if ( (code < 200) || (code >= 300) ) { if (code == 404) // file not found throw new com.limegroup.gnutella.downloader.FileNotFoundException(); else if (code == 410) // not shared. throw new NotSharingException(); else if (code == 416) //requested range not available throw new RangeNotAvailableException(); else if (code == 503) { // busy or queued, or range not available. int min = refQueueInfo[0]; int max = refQueueInfo[1]; int pos = refQueueInfo[2]; if(min != -1 && max != -1 && pos != -1) throw new QueuedException(min,max,pos); // per the PFSP spec, a 503 should be returned. // but, to let us distinguish between a busy & // a range not available, check if the partial // sources are filled up ... if( _rfd.isPartialSource() ) throw new RangeNotAvailableException(); //no QueuedException or RangeNotAvailableException? not queued. //throw a generic busy exception. throw new TryAgainLaterException(); // a general catch for 4xx and 5xx's // should maybe be a different exception? // else if ( (code >= 400) && (code < 600) ) } else // unknown or unimportant throw new UnknownCodeException(code); } } | 5134 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5134/6c7799a75296f717cc4aa6eade41b4bccbf2b5bd/HTTPDownloader.java/clean/components/gnutella-core/src/main/java/com/limegroup/gnutella/downloader/HTTPDownloader.java | [
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assertEquals("Tests didn't pass", "PASSED", result); | assertEquals("Tests didn't pass, check HTML output for details: " + output.getAbsolutePath(), "PASSED", result); | protected void runHTMLSuite(String browser, boolean slowResources) throws Exception { server = new SeleniumServer(SeleniumServer.DEFAULT_PORT, slowResources); launcher = new HTMLLauncher(server); server.start(); browserURL = "http://localhost:" + server.getPort(); String testURL = browserURL + "/selenium-server/tests/" + suiteName; int timeout = 60 * 10; // ten minutes String result = launcher.runHTMLSuite(browser, browserURL, testURL, output, timeout, multiWindow); assertTrue("Results file doesn't exist: " + output.getAbsolutePath(), output.exists()); assertEquals("Tests didn't pass", "PASSED", result); } | 5066 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5066/81a0c45445a8d58f8fcb6e823e18f5ab4fcffe0c/HTMLRunnerTestBase.java/buggy/server/src/test/java/org/openqa/selenium/server/HTMLRunnerTestBase.java | [
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client.game.getEntities( ce().getPosition() ); | client.game.getEntities( ce.getPosition() ); | public void actionPerformed(ActionEvent ev) { // Are we ignoring events? if ( this.isIgnoringEvents() ) { return; } if ( statusBarActionPerformed(ev, client) ) return; if (!client.isMyTurn()) { // odd... return; } if (ev.getSource() == butDone) { moveTo(cmd); } else if (ev.getActionCommand().equals(MOVE_NEXT)) { selectEntity(client.getNextEntityNum(cen)); } else if (ev.getActionCommand().equals(MOVE_CANCEL)) { clearAllMoves(); } else if (ev.getSource() == butMore) { buttonLayout++; buttonLayout %= NUM_BUTTON_LAYOUTS; setupButtonPanel(); } else if (ev.getActionCommand().equals(MOVE_UNJAM)) { if (gear == MovementDisplay.GEAR_JUMP || gear == MovementDisplay.GEAR_CHARGE || gear == MovementDisplay.GEAR_DFA || cmd.getMpUsed() > ce().getWalkMP()) { // in the wrong gear //clearAllMoves(); //gear = Compute.GEAR_LAND; setUnjamEnabled(false); } else { cmd.addStep(MovePath.STEP_UNJAM_RAC); moveTo(cmd); } } else if (ev.getActionCommand().equals(MOVE_WALK)) { if (gear == MovementDisplay.GEAR_JUMP) { clearAllMoves(); } gear = MovementDisplay.GEAR_LAND; } else if (ev.getActionCommand().equals(MOVE_JUMP)) { if (gear != MovementDisplay.GEAR_JUMP) { clearAllMoves(); } if (!cmd.isJumping()) { cmd.addStep(MovePath.STEP_START_JUMP); } gear = MovementDisplay.GEAR_JUMP; } else if (ev.getActionCommand().equals(MOVE_TURN)) { gear = MovementDisplay.GEAR_TURN; } else if (ev.getActionCommand().equals(MOVE_BACK_UP)) { if (gear == MovementDisplay.GEAR_JUMP) { clearAllMoves(); } gear = MovementDisplay.GEAR_BACKUP; } else if (ev.getActionCommand().equals(MOVE_CLEAR)) { clearAllMoves(); if (!client.game.containsMinefield(ce().getPosition())) { clientgui.doAlertDialog( "Can't clear minefield", "No minefield in hex!" ); return; } // Does the entity has a minesweeper? int clear = Minefield.CLEAR_NUMBER_INFANTRY; int boom = Minefield.CLEAR_NUMBER_INFANTRY_ACCIDENT; Enumeration equip = ce().getMisc(); while ( equip.hasMoreElements() ) { Mounted mounted = (Mounted) equip.nextElement(); if ( mounted.getType() .hasFlag(MiscType.F_MINESWEEPER) ) { clear = Minefield.CLEAR_NUMBER_SWEEPER; boom = Minefield.CLEAR_NUMBER_SWEEPER_ACCIDENT; break; } } StringBuffer buff = new StringBuffer(); buff.append( "The unit successfully clears the\nminefield on " ) .append( clear ) .append( "+. The minefield\nwill explode on " ) .append( boom ) .append( " or less." ); if ( clientgui.doYesNoDialog( "Clear the minefield?", buff.toString() ) ) { cmd.addStep(MovePath.STEP_CLEAR_MINEFIELD); moveTo(cmd); } } else if (ev.getActionCommand().equals(MOVE_CHARGE)) { if (gear != MovementDisplay.GEAR_LAND) { clearAllMoves(); } gear = MovementDisplay.GEAR_CHARGE; } else if (ev.getActionCommand().equals(MOVE_DFA)) { if (gear != MovementDisplay.GEAR_JUMP) { clearAllMoves(); } gear = MovementDisplay.GEAR_DFA; if (!cmd.isJumping()) { cmd.addStep(MovePath.STEP_START_JUMP); } } else if (ev.getActionCommand().equals(MOVE_GET_UP)) { clearAllMoves(); if (cmd.getFinalProne()) { cmd.addStep(MovePath.STEP_GET_UP); } clientgui.bv.drawMovementData(ce(), cmd); clientgui.bv.repaint(); butDone.setLabel("Move"); } else if (ev.getActionCommand().equals(MOVE_GO_PRONE)) { gear = MovementDisplay.GEAR_LAND; if (!cmd.getFinalProne()) { cmd.addStep(MovePath.STEP_GO_PRONE); } clientgui.bv.drawMovementData(ce(), cmd); clientgui.bv.repaint(); butDone.setLabel("Move"); } else if (ev.getActionCommand().equals(MOVE_FLEE) && clientgui.doYesNoDialog("Escape?", "Do you want to flee?")) { clearAllMoves(); cmd.addStep(MovePath.STEP_FLEE); moveTo(cmd); } else if (ev.getActionCommand().equals(MOVE_EJECT)) { if (ce() instanceof Tank) { if (clientgui.doYesNoDialog("Abandon?", "Do you want to abandon this vehicle?")) { clearAllMoves(); cmd.addStep(MovePath.STEP_EJECT); moveTo(cmd); } } else if (clientgui.doYesNoDialog("Eject?", "Do you want to abandon this mech?")) { clearAllMoves(); cmd.addStep(MovePath.STEP_EJECT); moveTo(cmd); } } else if ( ev.getActionCommand().equals(MOVE_LOAD) ) { // Find the other friendly unit in our hex, add it // to our local list of loaded units, and then stop. Entity other = null; Enumeration entities = client.game.getEntities( ce().getPosition() ); while ( entities.hasMoreElements() ) { other = (Entity)entities.nextElement(); if ( ce().getOwner() == other.getOwner() && !ce().equals(other) ) { loadedUnits.addElement( other ); break; } other = null; } // Handle not finding a unit to load. if ( other != null ) { cmd.addStep( MovePath.STEP_LOAD ); clientgui.bv.drawMovementData(ce(), cmd); gear = MovementDisplay.GEAR_LAND; } } else if ( ev.getActionCommand().equals(MOVE_UNLOAD) ) { // Ask the user if we're carrying multiple units. Entity other = getUnloadedUnit(); // Player can cancel the unload. if ( other != null ) { cmd.addStep( MovePath.STEP_UNLOAD, other ); clientgui.bv.drawMovementData(ce(), cmd); } } updateProneButtons(); updateRACButton(); updateLoadButtons(); } | 3464 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3464/0bcdeb0f45ab5ce89927be8a8c7c1c35c012d562/MovementDisplay.java/buggy/megamek/src/megamek/client/ui/AWT/MovementDisplay.java | [
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if (marker == null) return false; | if (marker == null) { return false; } | public boolean shouldEnable(IStructuredSelection selection) { if (selection.size() != 1) return false; IMarker marker = (IMarker) selection.getFirstElement(); if (marker == null) return false; return IDE.getMarkerHelpRegistry().hasResolutions(marker); } | 57470 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57470/e38d295ea613cf9f08aadb93a84a33d2e91abc5f/ResolveMarkerAction.java/buggy/bundles/org.eclipse.ui.ide/src/org/eclipse/ui/views/tasklist/ResolveMarkerAction.java | [
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ITextEditor textEditor = (ITextEditor)compilationUnitEditor; | ITextEditor textEditor = (ITextEditor)editorPart; | public IDocumentProvider getDocumentProvider() { if(this.getActivePage() != 0) { this.switchToJava(); } ITextEditor textEditor = (ITextEditor)compilationUnitEditor; return textEditor.getDocumentProvider(); } | 47899 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47899/7f5fba2ae90ca2a9e7d29f9d5522b9264fa6c613/ComponentEditor.java/clean/projects/wolips/plugins/org.objectstyle.wolips.componenteditor/java/org/objectstyle/wolips/componenteditor/part/ComponentEditor.java | [
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