id int32 0 252k | repo stringlengths 7 55 | path stringlengths 4 127 | func_name stringlengths 1 88 | original_string stringlengths 75 19.8k | language stringclasses 1
value | code stringlengths 75 19.8k | code_tokens list | docstring stringlengths 3 17.3k | docstring_tokens list | sha stringlengths 40 40 | url stringlengths 87 242 |
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16,200 | MacHu-GWU/uszipcode-project | fixcode.py | fixcode | def fixcode(**kwargs):
"""
auto pep8 format all python file in ``source code`` and ``tests`` dir.
"""
# repository direcotry
repo_dir = Path(__file__).parent.absolute()
# source code directory
source_dir = Path(repo_dir, package.__name__)
if source_dir.exists():
print("Source c... | python | def fixcode(**kwargs):
"""
auto pep8 format all python file in ``source code`` and ``tests`` dir.
"""
# repository direcotry
repo_dir = Path(__file__).parent.absolute()
# source code directory
source_dir = Path(repo_dir, package.__name__)
if source_dir.exists():
print("Source c... | [
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16,201 | MacHu-GWU/uszipcode-project | uszipcode/pkg/sqlalchemy_mate/pkg/prettytable/prettytable.py | PrettyTable._get_rows | def _get_rows(self, options):
"""Return only those data rows that should be printed, based on slicing and sorting.
Arguments:
options - dictionary of option settings."""
if options["oldsortslice"]:
rows = copy.deepcopy(self._rows[options["start"]:options["end"]])
e... | python | def _get_rows(self, options):
"""Return only those data rows that should be printed, based on slicing and sorting.
Arguments:
options - dictionary of option settings."""
if options["oldsortslice"]:
rows = copy.deepcopy(self._rows[options["start"]:options["end"]])
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16,202 | MacHu-GWU/uszipcode-project | uszipcode/pkg/sqlalchemy_mate/engine_creator.py | create_postgresql_pg8000 | def create_postgresql_pg8000(username, password, host, port, database, **kwargs): # pragma: no cover
"""
create an engine connected to a postgresql database using pg8000.
"""
return create_engine(
_create_postgresql_pg8000(username, password, host, port, database),
**kwargs
) | python | def create_postgresql_pg8000(username, password, host, port, database, **kwargs): # pragma: no cover
"""
create an engine connected to a postgresql database using pg8000.
"""
return create_engine(
_create_postgresql_pg8000(username, password, host, port, database),
**kwargs
) | [
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16,203 | MacHu-GWU/uszipcode-project | uszipcode/pkg/sqlalchemy_mate/engine_creator.py | create_postgresql_pygresql | def create_postgresql_pygresql(username, password, host, port, database, **kwargs): # pragma: no cover
"""
create an engine connected to a postgresql database using pygresql.
"""
return create_engine(
_create_postgresql_pygresql(username, password, host, port, database),
**kwargs
) | python | def create_postgresql_pygresql(username, password, host, port, database, **kwargs): # pragma: no cover
"""
create an engine connected to a postgresql database using pygresql.
"""
return create_engine(
_create_postgresql_pygresql(username, password, host, port, database),
**kwargs
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16,204 | MacHu-GWU/uszipcode-project | uszipcode/pkg/sqlalchemy_mate/engine_creator.py | create_postgresql_psycopg2cffi | def create_postgresql_psycopg2cffi(username, password, host, port, database, **kwargs): # pragma: no cover
"""
create an engine connected to a postgresql database using psycopg2cffi.
"""
return create_engine(
_create_postgresql_psycopg2cffi(
username, password, host, port, database)... | python | def create_postgresql_psycopg2cffi(username, password, host, port, database, **kwargs): # pragma: no cover
"""
create an engine connected to a postgresql database using psycopg2cffi.
"""
return create_engine(
_create_postgresql_psycopg2cffi(
username, password, host, port, database)... | [
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16,205 | MacHu-GWU/uszipcode-project | uszipcode/pkg/sqlalchemy_mate/engine_creator.py | create_postgresql_pypostgresql | def create_postgresql_pypostgresql(username, password, host, port, database, **kwargs): # pragma: no cover
"""
create an engine connected to a postgresql database using pypostgresql.
"""
return create_engine(
_create_postgresql_pypostgresql(
username, password, host, port, database)... | python | def create_postgresql_pypostgresql(username, password, host, port, database, **kwargs): # pragma: no cover
"""
create an engine connected to a postgresql database using pypostgresql.
"""
return create_engine(
_create_postgresql_pypostgresql(
username, password, host, port, database)... | [
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16,206 | MacHu-GWU/uszipcode-project | uszipcode/pkg/sqlalchemy_mate/engine_creator.py | create_mysql_mysqlconnector | def create_mysql_mysqlconnector(username, password, host, port, database, **kwargs): # pragma: no cover
"""
create an engine connected to a mysql database using mysqlconnector.
"""
return create_engine(
_create_mysql_mysqlconnector(username, password, host, port, database),
**kwargs
... | python | def create_mysql_mysqlconnector(username, password, host, port, database, **kwargs): # pragma: no cover
"""
create an engine connected to a mysql database using mysqlconnector.
"""
return create_engine(
_create_mysql_mysqlconnector(username, password, host, port, database),
**kwargs
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16,207 | MacHu-GWU/uszipcode-project | uszipcode/pkg/sqlalchemy_mate/engine_creator.py | create_mysql_oursql | def create_mysql_oursql(username, password, host, port, database, **kwargs): # pragma: no cover
"""
create an engine connected to a mysql database using oursql.
"""
return create_engine(
_create_mysql_oursql(username, password, host, port, database),
**kwargs
) | python | def create_mysql_oursql(username, password, host, port, database, **kwargs): # pragma: no cover
"""
create an engine connected to a mysql database using oursql.
"""
return create_engine(
_create_mysql_oursql(username, password, host, port, database),
**kwargs
) | [
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16,208 | MacHu-GWU/uszipcode-project | uszipcode/pkg/sqlalchemy_mate/engine_creator.py | create_mysql_pymysql | def create_mysql_pymysql(username, password, host, port, database, **kwargs): # pragma: no cover
"""
create an engine connected to a mysql database using pymysql.
"""
return create_engine(
_create_mysql_pymysql(username, password, host, port, database),
**kwargs
) | python | def create_mysql_pymysql(username, password, host, port, database, **kwargs): # pragma: no cover
"""
create an engine connected to a mysql database using pymysql.
"""
return create_engine(
_create_mysql_pymysql(username, password, host, port, database),
**kwargs
) | [
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16,209 | MacHu-GWU/uszipcode-project | uszipcode/pkg/sqlalchemy_mate/engine_creator.py | create_mysql_cymysql | def create_mysql_cymysql(username, password, host, port, database, **kwargs): # pragma: no cover
"""
create an engine connected to a mysql database using cymysql.
"""
return create_engine(
_create_mysql_cymysql(username, password, host, port, database),
**kwargs
) | python | def create_mysql_cymysql(username, password, host, port, database, **kwargs): # pragma: no cover
"""
create an engine connected to a mysql database using cymysql.
"""
return create_engine(
_create_mysql_cymysql(username, password, host, port, database),
**kwargs
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16,210 | MacHu-GWU/uszipcode-project | uszipcode/pkg/sqlalchemy_mate/engine_creator.py | create_mssql_pyodbc | def create_mssql_pyodbc(username, password, host, port, database, **kwargs): # pragma: no cover
"""
create an engine connected to a mssql database using pyodbc.
"""
return create_engine(
_create_mssql_pyodbc(username, password, host, port, database),
**kwargs
) | python | def create_mssql_pyodbc(username, password, host, port, database, **kwargs): # pragma: no cover
"""
create an engine connected to a mssql database using pyodbc.
"""
return create_engine(
_create_mssql_pyodbc(username, password, host, port, database),
**kwargs
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16,211 | MacHu-GWU/uszipcode-project | uszipcode/pkg/sqlalchemy_mate/engine_creator.py | create_mssql_pymssql | def create_mssql_pymssql(username, password, host, port, database, **kwargs): # pragma: no cover
"""
create an engine connected to a mssql database using pymssql.
"""
return create_engine(
_create_mssql_pymssql(username, password, host, port, database),
**kwargs
) | python | def create_mssql_pymssql(username, password, host, port, database, **kwargs): # pragma: no cover
"""
create an engine connected to a mssql database using pymssql.
"""
return create_engine(
_create_mssql_pymssql(username, password, host, port, database),
**kwargs
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16,212 | MacHu-GWU/uszipcode-project | dataset/step2_merge_zipcode_data.py | titleize | def titleize(text):
"""Capitalizes all the words and replaces some characters in the string
to create a nicer looking title.
"""
if len(text) == 0: # if empty string, return it
return text
else:
text = text.lower() # lower all char
# delete redundant empty space
chu... | python | def titleize(text):
"""Capitalizes all the words and replaces some characters in the string
to create a nicer looking title.
"""
if len(text) == 0: # if empty string, return it
return text
else:
text = text.lower() # lower all char
# delete redundant empty space
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16,213 | MacHu-GWU/uszipcode-project | uszipcode/pkg/sqlalchemy_mate/utils.py | grouper_list | def grouper_list(l, n):
"""Evenly divide list into fixed-length piece, no filled value if chunk
size smaller than fixed-length.
Example::
>>> list(grouper(range(10), n=3)
[[0, 1, 2], [3, 4, 5], [6, 7, 8], [9]]
**中文文档**
将一个列表按照尺寸n, 依次打包输出, 有多少输出多少, 并不强制填充包的大小到n。
下列实现是按照性能从高到低... | python | def grouper_list(l, n):
"""Evenly divide list into fixed-length piece, no filled value if chunk
size smaller than fixed-length.
Example::
>>> list(grouper(range(10), n=3)
[[0, 1, 2], [3, 4, 5], [6, 7, 8], [9]]
**中文文档**
将一个列表按照尺寸n, 依次打包输出, 有多少输出多少, 并不强制填充包的大小到n。
下列实现是按照性能从高到低... | [
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16,214 | MacHu-GWU/uszipcode-project | uszipcode/pkg/sqlalchemy_mate/utils.py | convert_query_to_sql_statement | def convert_query_to_sql_statement(query):
"""
Convert a Query object created from orm query, into executable sql statement.
:param query: :class:`sqlalchemy.orm.Query`
:return: :class:`sqlalchemy.sql.selectable.Select`
"""
context = query._compile_context()
context.statement.use_labels = ... | python | def convert_query_to_sql_statement(query):
"""
Convert a Query object created from orm query, into executable sql statement.
:param query: :class:`sqlalchemy.orm.Query`
:return: :class:`sqlalchemy.sql.selectable.Select`
"""
context = query._compile_context()
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16,215 | MacHu-GWU/uszipcode-project | uszipcode/pkg/sqlalchemy_mate/utils.py | execute_query_return_result_proxy | def execute_query_return_result_proxy(query):
"""
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:param query: :class:`sqlalchemy.orm.Query`,
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:return: :class:`sqlalchemy.engine.result.ResultProxy`
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"""
Execute a query, yield result proxy.
:param query: :class:`sqlalchemy.orm.Query`,
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16,216 | MacHu-GWU/uszipcode-project | uszipcode/search.py | SearchEngine.find_state | def find_state(self, state, best_match=True, min_similarity=70):
"""
Fuzzy search correct state.
:param best_match: bool, when True, only the best matched state
will be return. otherwise, will return all matching states.
"""
result_state_short_list = list()
... | python | def find_state(self, state, best_match=True, min_similarity=70):
"""
Fuzzy search correct state.
:param best_match: bool, when True, only the best matched state
will be return. otherwise, will return all matching states.
"""
result_state_short_list = list()
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16,217 | MacHu-GWU/uszipcode-project | uszipcode/search.py | SearchEngine.find_city | def find_city(self, city, state=None, best_match=True, min_similarity=70):
"""
Fuzzy search correct city.
:param city: city name.
:param state: search city in specified state.
:param best_match: bool, when True, only the best matched city
will return. otherwise, will... | python | def find_city(self, city, state=None, best_match=True, min_similarity=70):
"""
Fuzzy search correct city.
:param city: city name.
:param state: search city in specified state.
:param best_match: bool, when True, only the best matched city
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**中文文档**
如果给定了state, 则只在指定的state里的城市中寻找, 否则, 在全国... | [
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16,218 | MacHu-GWU/uszipcode-project | uszipcode/search.py | SearchEngine._resolve_sort_by | def _resolve_sort_by(sort_by, flag_radius_query):
"""
Result ``sort_by`` argument.
:param sort_by: str, or sqlalchemy ORM attribute.
:param flag_radius_query:
:return:
"""
if sort_by is None:
if flag_radius_query:
sort_by = SORT_BY_DIS... | python | def _resolve_sort_by(sort_by, flag_radius_query):
"""
Result ``sort_by`` argument.
:param sort_by: str, or sqlalchemy ORM attribute.
:param flag_radius_query:
:return:
"""
if sort_by is None:
if flag_radius_query:
sort_by = SORT_BY_DIS... | [
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16,219 | MacHu-GWU/uszipcode-project | uszipcode/search.py | SearchEngine.by_zipcode | def by_zipcode(self,
zipcode,
zipcode_type=None,
zero_padding=True):
"""
Search zipcode by exact 5 digits zipcode. No zero padding is needed.
:param zipcode: int or str, the zipcode will be automatically
zero padding to 5 digi... | python | def by_zipcode(self,
zipcode,
zipcode_type=None,
zero_padding=True):
"""
Search zipcode by exact 5 digits zipcode. No zero padding is needed.
:param zipcode: int or str, the zipcode will be automatically
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16,220 | MacHu-GWU/uszipcode-project | uszipcode/search.py | SearchEngine.by_prefix | def by_prefix(self,
prefix,
zipcode_type=ZipcodeType.Standard,
sort_by=SimpleZipcode.zipcode.name,
ascending=True,
returns=DEFAULT_LIMIT):
"""
Search zipcode information by first N digits.
Returns multiple... | python | def by_prefix(self,
prefix,
zipcode_type=ZipcodeType.Standard,
sort_by=SimpleZipcode.zipcode.name,
ascending=True,
returns=DEFAULT_LIMIT):
"""
Search zipcode information by first N digits.
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16,221 | MacHu-GWU/uszipcode-project | uszipcode/search.py | SearchEngine.by_pattern | def by_pattern(self,
pattern,
zipcode_type=ZipcodeType.Standard,
sort_by=SimpleZipcode.zipcode.name,
ascending=True,
returns=DEFAULT_LIMIT):
"""
Search zipcode by wildcard.
Returns multiple results.
... | python | def by_pattern(self,
pattern,
zipcode_type=ZipcodeType.Standard,
sort_by=SimpleZipcode.zipcode.name,
ascending=True,
returns=DEFAULT_LIMIT):
"""
Search zipcode by wildcard.
Returns multiple results.
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16,222 | MacHu-GWU/uszipcode-project | uszipcode/search.py | SearchEngine.by_state | def by_state(self,
state,
zipcode_type=ZipcodeType.Standard,
sort_by=SimpleZipcode.zipcode.name,
ascending=True,
returns=DEFAULT_LIMIT):
"""
Search zipcode information by fuzzy State name.
My engine use fuzzy m... | python | def by_state(self,
state,
zipcode_type=ZipcodeType.Standard,
sort_by=SimpleZipcode.zipcode.name,
ascending=True,
returns=DEFAULT_LIMIT):
"""
Search zipcode information by fuzzy State name.
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16,223 | MacHu-GWU/uszipcode-project | uszipcode/search.py | SearchEngine.by_coordinates | def by_coordinates(self,
lat,
lng,
radius=25.0,
zipcode_type=ZipcodeType.Standard,
sort_by=SORT_BY_DIST,
ascending=True,
returns=DEFAULT_LIMIT):
"""
... | python | def by_coordinates(self,
lat,
lng,
radius=25.0,
zipcode_type=ZipcodeType.Standard,
sort_by=SORT_BY_DIST,
ascending=True,
returns=DEFAULT_LIMIT):
"""
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1. 计算出在中心坐标处, 每一经度和纬度分别代表多少miles.
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16,224 | MacHu-GWU/uszipcode-project | uszipcode/search.py | SearchEngine.by_population | def by_population(self,
lower=-1,
upper=2 ** 31,
zipcode_type=ZipcodeType.Standard,
sort_by=SimpleZipcode.population.name,
ascending=False,
returns=DEFAULT_LIMIT):
"""
Sear... | python | def by_population(self,
lower=-1,
upper=2 ** 31,
zipcode_type=ZipcodeType.Standard,
sort_by=SimpleZipcode.population.name,
ascending=False,
returns=DEFAULT_LIMIT):
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16,225 | MacHu-GWU/uszipcode-project | uszipcode/search.py | SearchEngine.by_population_density | def by_population_density(self,
lower=-1,
upper=2 ** 31,
zipcode_type=ZipcodeType.Standard,
sort_by=SimpleZipcode.population_density.name,
ascending=False,
... | python | def by_population_density(self,
lower=-1,
upper=2 ** 31,
zipcode_type=ZipcodeType.Standard,
sort_by=SimpleZipcode.population_density.name,
ascending=False,
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16,226 | MacHu-GWU/uszipcode-project | uszipcode/search.py | SearchEngine.by_housing_units | def by_housing_units(self,
lower=-1,
upper=2 ** 31,
zipcode_type=ZipcodeType.Standard,
sort_by=SimpleZipcode.housing_units.name,
ascending=False,
returns=DEFAULT_LIMIT):
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lower=-1,
upper=2 ** 31,
zipcode_type=ZipcodeType.Standard,
sort_by=SimpleZipcode.housing_units.name,
ascending=False,
returns=DEFAULT_LIMIT):
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16,227 | MacHu-GWU/uszipcode-project | uszipcode/search.py | SearchEngine.by_occupied_housing_units | def by_occupied_housing_units(self,
lower=-1,
upper=2 ** 31,
zipcode_type=ZipcodeType.Standard,
sort_by=SimpleZipcode.occupied_housing_units.name,
asc... | python | def by_occupied_housing_units(self,
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upper=2 ** 31,
zipcode_type=ZipcodeType.Standard,
sort_by=SimpleZipcode.occupied_housing_units.name,
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16,228 | MacHu-GWU/uszipcode-project | uszipcode/search.py | SearchEngine.by_median_home_value | def by_median_home_value(self,
lower=-1,
upper=2 ** 31,
zipcode_type=ZipcodeType.Standard,
sort_by=SimpleZipcode.median_home_value.name,
ascending=False,
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upper=2 ** 31,
zipcode_type=ZipcodeType.Standard,
sort_by=SimpleZipcode.median_home_value.name,
ascending=False,
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16,229 | MacHu-GWU/uszipcode-project | uszipcode/search.py | SearchEngine.by_median_household_income | def by_median_household_income(self,
lower=-1,
upper=2 ** 31,
zipcode_type=ZipcodeType.Standard,
sort_by=SimpleZipcode.median_household_income.name,
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upper=2 ** 31,
zipcode_type=ZipcodeType.Standard,
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16,230 | MacHu-GWU/uszipcode-project | uszipcode/pkg/sqlalchemy_mate/crud/selecting.py | select_single_column | def select_single_column(engine, column):
"""
Select data from single column.
Example::
>>> select_single_column(engine, table_user.c.id)
[1, 2, 3]
>>> select_single_column(engine, table_user.c.name)
["Alice", "Bob", "Cathy"]
"""
s = select([column])
return col... | python | def select_single_column(engine, column):
"""
Select data from single column.
Example::
>>> select_single_column(engine, table_user.c.id)
[1, 2, 3]
>>> select_single_column(engine, table_user.c.name)
["Alice", "Bob", "Cathy"]
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16,231 | MacHu-GWU/uszipcode-project | uszipcode/pkg/sqlalchemy_mate/crud/selecting.py | select_many_column | def select_many_column(engine, *columns):
"""
Select data from multiple columns.
Example::
>>> select_many_column(engine, table_user.c.id, table_user.c.name)
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Example::
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16,232 | MacHu-GWU/uszipcode-project | uszipcode/pkg/sqlalchemy_mate/crud/selecting.py | select_random | def select_random(engine, table_or_columns, limit=5):
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"""
Randomly select some rows from table.
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s = select(table_or_columns).order_by(func.random()).limit(limit)
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16,233 | MacHu-GWU/uszipcode-project | uszipcode/pkg/sqlalchemy_mate/crud/inserting.py | smart_insert | def smart_insert(engine, table, data, minimal_size=5):
"""
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speed. But ATOMIC WRITE IS NOT ENSURED IF THE PROGRAM IS INTERRUPTED.
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16,234 | Hironsan/HateSonar | hatesonar/crawler/twitter.py | load_keys | def load_keys():
"""Loads Twitter keys.
Returns:
tuple: consumer_key, consumer_secret, access_token, access_token_secret
"""
consumer_key = os.environ.get('CONSUMER_KEY')
consumer_secret = os.environ.get('CONSUMER_SECRET')
access_token = os.environ.get('ACCESS_TOKEN')
access_token_s... | python | def load_keys():
"""Loads Twitter keys.
Returns:
tuple: consumer_key, consumer_secret, access_token, access_token_secret
"""
consumer_key = os.environ.get('CONSUMER_KEY')
consumer_secret = os.environ.get('CONSUMER_SECRET')
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16,235 | Hironsan/HateSonar | hatesonar/crawler/twitter.py | TwitterAPI.search | def search(self, q):
"""Search tweets by keyword.
Args:
q: keyword
Returns:
list: tweet list
"""
results = self._api.search(q=q)
return results | python | def search(self, q):
"""Search tweets by keyword.
Args:
q: keyword
Returns:
list: tweet list
"""
results = self._api.search(q=q)
return results | [
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16,236 | Hironsan/HateSonar | hatesonar/crawler/twitter.py | TwitterAPI.search_by_user | def search_by_user(self, screen_name, count=100):
"""Search tweets by user.
Args:
screen_name: screen name
count: the number of tweets
Returns:
list: tweet list
"""
results = self._api.user_timeline(screen_name=screen_name, count=count)
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"""Search tweets by user.
Args:
screen_name: screen name
count: the number of tweets
Returns:
list: tweet list
"""
results = self._api.user_timeline(screen_name=screen_name, count=count)
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16,237 | YosaiProject/yosai | yosai/core/mgt/mgt.py | AbstractRememberMeManager.on_successful_login | def on_successful_login(self, subject, authc_token, account_id):
"""
Reacts to the successful login attempt by first always
forgetting any previously stored identity. Then if the authc_token
is a ``RememberMe`` type of token, the associated identity
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16,238 | YosaiProject/yosai | yosai/core/mgt/mgt.py | AbstractRememberMeManager.remember_identity | def remember_identity(self, subject, authc_token, account_id):
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16,239 | YosaiProject/yosai | yosai/core/mgt/mgt.py | AbstractRememberMeManager.convert_bytes_to_identifiers | def convert_bytes_to_identifiers(self, encrypted, subject_context):
"""
If a cipher_service is available, it will be used to first decrypt the
serialized message. Then, the bytes are deserialized and returned.
:param serialized: the bytes to decrypt and then deserialize
:p... | python | def convert_bytes_to_identifiers(self, encrypted, subject_context):
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16,240 | YosaiProject/yosai | yosai/core/mgt/mgt.py | AbstractRememberMeManager.encrypt | def encrypt(self, serialized):
"""
Encrypts the serialized message using Fernet
:param serialized: the serialized object to encrypt
:type serialized: bytes
:returns: an encrypted bytes returned by Fernet
"""
fernet = Fernet(self.encryption_cipher_key)
re... | python | def encrypt(self, serialized):
"""
Encrypts the serialized message using Fernet
:param serialized: the serialized object to encrypt
:type serialized: bytes
:returns: an encrypted bytes returned by Fernet
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16,241 | YosaiProject/yosai | yosai/core/mgt/mgt.py | AbstractRememberMeManager.decrypt | def decrypt(self, encrypted):
"""
decrypts the encrypted message using Fernet
:param encrypted: the encrypted message
:returns: the decrypted, serialized identifier collection
"""
fernet = Fernet(self.decryption_cipher_key)
return fernet.decrypt(encrypted) | python | def decrypt(self, encrypted):
"""
decrypts the encrypted message using Fernet
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16,242 | YosaiProject/yosai | yosai/core/mgt/mgt.py | NativeSecurityManager.create_subject | def create_subject(self,
authc_token=None,
account_id=None,
existing_subject=None,
subject_context=None):
"""
Creates a ``Subject`` instance for the user represented by the given method
arguments.
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16,243 | YosaiProject/yosai | yosai/core/mgt/mgt.py | NativeSecurityManager.login | def login(self, subject, authc_token):
"""
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16,244 | YosaiProject/yosai | yosai/core/mgt/mgt.py | NativeSecurityManager.ensure_security_manager | def ensure_security_manager(self, subject_context):
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16,247 | YosaiProject/yosai | yosai/core/mgt/mgt.py | NativeSecurityManager.logout | def logout(self, subject):
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16,248 | YosaiProject/yosai | yosai/core/realm/realm.py | AccountStoreRealm.is_permitted | def is_permitted(self, identifiers, permission_s):
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16,249 | YosaiProject/yosai | yosai/core/realm/realm.py | AccountStoreRealm.has_role | def has_role(self, identifiers, required_role_s):
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16,250 | YosaiProject/yosai | yosai/web/session/session.py | WebSessionHandler.on_start | def on_start(self, session, session_context):
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16,251 | YosaiProject/yosai | yosai/web/session/session.py | WebSessionStorageEvaluator.is_session_storage_enabled | def is_session_storage_enabled(self, subject=None):
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16,252 | YosaiProject/yosai | yosai/core/serialize/marshalling.py | default_marshaller | def default_marshaller(obj):
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16,254 | YosaiProject/yosai | yosai/core/authc/authc.py | DefaultAuthenticator.do_authenticate_account | def do_authenticate_account(self, authc_token):
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16,255 | YosaiProject/yosai | yosai/core/logging/formatters.py | JSONFormatter.extra_from_record | def extra_from_record(self, record):
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16,256 | YosaiProject/yosai | yosai/core/subject/subject.py | SubjectStore.save | def save(self, subject):
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16,257 | YosaiProject/yosai | yosai/core/subject/subject.py | SecurityManagerCreator.create_manager | def create_manager(self, yosai, settings, session_attributes):
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16,258 | YosaiProject/yosai | yosai/core/authz/authz.py | ModularRealmAuthorizer.check_permission | def check_permission(self, identifiers, permission_s, logical_operator):
"""
like Yosai's authentication process, the authorization process will
raise an Exception to halt further authz checking once Yosai determines
that a Subject is unauthorized to receive the requested permission
... | python | def check_permission(self, identifiers, permission_s, logical_operator):
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like Yosai's authentication process, the authorization process will
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16,259 | YosaiProject/yosai | yosai/core/subject/identifier.py | SimpleIdentifierCollection.by_type | def by_type(self, identifier_class):
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16,260 | YosaiProject/yosai | yosai/core/session/session.py | CachingSessionStore.create | def create(self, session):
"""
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sessionid = super().create(session) # calls _do_create and verify
self._cache(session, sessionid)
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"""
caches the session and caches an entry to associate the cached session
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sessionid = super().create(session) # calls _do_create and verify
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16,261 | YosaiProject/yosai | yosai/core/session/session.py | NativeSessionManager.start | def start(self, session_context):
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16,263 | YosaiProject/yosai | yosai/web/mgt/mgt.py | CookieRememberMeManager.remember_encrypted_identity | def remember_encrypted_identity(self, subject, encrypted):
"""
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16,264 | YosaiProject/yosai | yosai/web/mgt/mgt.py | CookieRememberMeManager.get_remembered_encrypted_identity | def get_remembered_encrypted_identity(self, subject_context):
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16,265 | jobec/django-auth-adfs | django_auth_adfs/config.py | _get_settings_class | def _get_settings_class():
"""
Get the AUTH_ADFS setting from the Django settings.
"""
if not hasattr(django_settings, "AUTH_ADFS"):
msg = "The configuration directive 'AUTH_ADFS' was not found in your Django settings"
raise ImproperlyConfigured(msg)
cls = django_settings.AUTH_ADFS.g... | python | def _get_settings_class():
"""
Get the AUTH_ADFS setting from the Django settings.
"""
if not hasattr(django_settings, "AUTH_ADFS"):
msg = "The configuration directive 'AUTH_ADFS' was not found in your Django settings"
raise ImproperlyConfigured(msg)
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16,266 | jobec/django-auth-adfs | django_auth_adfs/config.py | ProviderConfig.build_authorization_endpoint | def build_authorization_endpoint(self, request, disable_sso=None):
"""
This function returns the ADFS authorization URL.
Args:
request(django.http.request.HttpRequest): A django Request object
disable_sso(bool): Whether to disable single sign-on and force the ADFS server... | python | def build_authorization_endpoint(self, request, disable_sso=None):
"""
This function returns the ADFS authorization URL.
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request(django.http.request.HttpRequest): A django Request object
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16,267 | jobec/django-auth-adfs | django_auth_adfs/backend.py | AdfsBaseBackend.create_user | def create_user(self, claims):
"""
Create the user if it doesn't exist yet
Args:
claims (dict): claims from the access token
Returns:
django.contrib.auth.models.User: A Django user
"""
# Create the user
username_claim = settings.USERNAME_... | python | def create_user(self, claims):
"""
Create the user if it doesn't exist yet
Args:
claims (dict): claims from the access token
Returns:
django.contrib.auth.models.User: A Django user
"""
# Create the user
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16,268 | jobec/django-auth-adfs | django_auth_adfs/backend.py | AdfsBaseBackend.update_user_attributes | def update_user_attributes(self, user, claims):
"""
Updates user attributes based on the CLAIM_MAPPING setting.
Args:
user (django.contrib.auth.models.User): User model instance
claims (dict): claims from the access token
"""
required_fields = [field.nam... | python | def update_user_attributes(self, user, claims):
"""
Updates user attributes based on the CLAIM_MAPPING setting.
Args:
user (django.contrib.auth.models.User): User model instance
claims (dict): claims from the access token
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16,269 | jobec/django-auth-adfs | django_auth_adfs/backend.py | AdfsBaseBackend.update_user_groups | def update_user_groups(self, user, claims):
"""
Updates user group memberships based on the GROUPS_CLAIM setting.
Args:
user (django.contrib.auth.models.User): User model instance
claims (dict): Claims from the access token
"""
if settings.GROUPS_CLAIM is... | python | def update_user_groups(self, user, claims):
"""
Updates user group memberships based on the GROUPS_CLAIM setting.
Args:
user (django.contrib.auth.models.User): User model instance
claims (dict): Claims from the access token
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16,270 | jobec/django-auth-adfs | django_auth_adfs/backend.py | AdfsBaseBackend.update_user_flags | def update_user_flags(self, user, claims):
"""
Updates user boolean attributes based on the BOOLEAN_CLAIM_MAPPING setting.
Args:
user (django.contrib.auth.models.User): User model instance
claims (dict): Claims from the access token
"""
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"""
Updates user boolean attributes based on the BOOLEAN_CLAIM_MAPPING setting.
Args:
user (django.contrib.auth.models.User): User model instance
claims (dict): Claims from the access token
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16,271 | jobec/django-auth-adfs | django_auth_adfs/views.py | OAuth2CallbackView.get | def get(self, request):
"""
Handles the redirect from ADFS to our site.
We try to process the passed authorization code and login the user.
Args:
request (django.http.request.HttpRequest): A Django Request object
"""
code = request.GET.get("code")
if... | python | def get(self, request):
"""
Handles the redirect from ADFS to our site.
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Args:
request (django.http.request.HttpRequest): A Django Request object
"""
code = request.GET.get("code")
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16,272 | jobec/django-auth-adfs | django_auth_adfs/rest_framework.py | AdfsAccessTokenAuthentication.authenticate | def authenticate(self, request):
"""
Returns a `User` if a correct access token has been supplied
in the Authorization header. Otherwise returns `None`.
"""
auth = get_authorization_header(request).split()
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"""
Returns a `User` if a correct access token has been supplied
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16,273 | chemlab/chemlab | chemlab/qc/wavefunction.py | molecular_orbital | def molecular_orbital(coords, mocoeffs, gbasis):
'''Return a molecular orbital given the nuclei coordinates, as well as
molecular orbital coefficients and basis set specification as given by the cclib library.
The molecular orbital is represented as a function that takes x, y, z coordinates (in a vec... | python | def molecular_orbital(coords, mocoeffs, gbasis):
'''Return a molecular orbital given the nuclei coordinates, as well as
molecular orbital coefficients and basis set specification as given by the cclib library.
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16,274 | chemlab/chemlab | chemlab/qc/wavefunction.py | getbfs | def getbfs(coords, gbasis):
"""Convenience function for both wavefunction and density based on PyQuante Ints.py."""
sym2powerlist = {
'S' : [(0,0,0)],
'P' : [(1,0,0),(0,1,0),(0,0,1)],
'D' : [(2,0,0),(0,2,0),(0,0,2),(1,1,0),(0,1,1),(1,0,1)],
'F' : [(3,0,0),(2,1,0),(2,0,1),(1,2,0)... | python | def getbfs(coords, gbasis):
"""Convenience function for both wavefunction and density based on PyQuante Ints.py."""
sym2powerlist = {
'S' : [(0,0,0)],
'P' : [(1,0,0),(0,1,0),(0,0,1)],
'D' : [(2,0,0),(0,2,0),(0,0,2),(1,1,0),(0,1,1),(1,0,1)],
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16,275 | chemlab/chemlab | chemlab/qc/one.py | A_term | def A_term(i,r,u,l1,l2,PAx,PBx,CPx,gamma):
"""
THO eq. 2.18
>>> A_term(0,0,0,0,0,0,0,0,1)
1.0
>>> A_term(0,0,0,0,1,1,1,1,1)
1.0
>>> A_term(1,0,0,0,1,1,1,1,1)
-1.0
>>> A_term(0,0,0,1,1,1,1,1,1)
1.0
>>> A_term(1,0,0,1,1,1,1,1,1)
-2.0
>>> A_term(2,0,0,1,1,1,1,1,1)
1... | python | def A_term(i,r,u,l1,l2,PAx,PBx,CPx,gamma):
"""
THO eq. 2.18
>>> A_term(0,0,0,0,0,0,0,0,1)
1.0
>>> A_term(0,0,0,0,1,1,1,1,1)
1.0
>>> A_term(1,0,0,0,1,1,1,1,1)
-1.0
>>> A_term(0,0,0,1,1,1,1,1,1)
1.0
>>> A_term(1,0,0,1,1,1,1,1,1)
-2.0
>>> A_term(2,0,0,1,1,1,1,1,1)
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16,276 | chemlab/chemlab | chemlab/qc/one.py | A_array | def A_array(l1,l2,PA,PB,CP,g):
"""
THO eq. 2.18 and 3.1
>>> A_array(0,0,0,0,0,1)
[1.0]
>>> A_array(0,1,1,1,1,1)
[1.0, -1.0]
>>> A_array(1,1,1,1,1,1)
[1.5, -2.5, 1.0]
"""
Imax = l1+l2+1
A = [0]*Imax
for i in range(Imax):
for r in range(int(floor(i/2)+1)):
... | python | def A_array(l1,l2,PA,PB,CP,g):
"""
THO eq. 2.18 and 3.1
>>> A_array(0,0,0,0,0,1)
[1.0]
>>> A_array(0,1,1,1,1,1)
[1.0, -1.0]
>>> A_array(1,1,1,1,1,1)
[1.5, -2.5, 1.0]
"""
Imax = l1+l2+1
A = [0]*Imax
for i in range(Imax):
for r in range(int(floor(i/2)+1)):
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16,277 | chemlab/chemlab | chemlab/qc/pgbf.py | pgbf._normalize | def _normalize(self):
"Normalize basis function. From THO eq. 2.2"
l,m,n = self.powers
self.norm = np.sqrt(pow(2,2*(l+m+n)+1.5)*
pow(self.exponent,l+m+n+1.5)/
fact2(2*l-1)/fact2(2*m-1)/
fact2(2*n-1)/pow(np.pi,1.5... | python | def _normalize(self):
"Normalize basis function. From THO eq. 2.2"
l,m,n = self.powers
self.norm = np.sqrt(pow(2,2*(l+m+n)+1.5)*
pow(self.exponent,l+m+n+1.5)/
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16,278 | chemlab/chemlab | chemlab/mviewer/representations/ballandstick.py | BallAndStickRepresentation.hide | def hide(self, selections):
'''Hide objects in this representation. BallAndStickRepresentation
support selections of atoms and bonds.
To hide the first atom and the first bond you can use the
following code::
from chemlab.mviewer.state import Selection
represent... | python | def hide(self, selections):
'''Hide objects in this representation. BallAndStickRepresentation
support selections of atoms and bonds.
To hide the first atom and the first bond you can use the
following code::
from chemlab.mviewer.state import Selection
represent... | [
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16,279 | chemlab/chemlab | chemlab/mviewer/representations/ballandstick.py | BallAndStickRepresentation.change_radius | def change_radius(self, selections, value):
'''Change the radius of each atom by a certain value
'''
if 'atoms' in selections:
atms = selections['atoms'].mask
if value is None:
self.radii_state.array[atms] = [vdw_radii.get(t) * 0.3 for t in self.... | python | def change_radius(self, selections, value):
'''Change the radius of each atom by a certain value
'''
if 'atoms' in selections:
atms = selections['atoms'].mask
if value is None:
self.radii_state.array[atms] = [vdw_radii.get(t) * 0.3 for t in self.... | [
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16,280 | chemlab/chemlab | chemlab/graphics/qt/qchemlabwidget.py | QChemlabWidget.paintGL | def paintGL(self):
'''GL function called each time a frame is drawn'''
if self.post_processing:
# Render to the first framebuffer
glBindFramebuffer(GL_FRAMEBUFFER, self.fb0)
glViewport(0, 0, self.width(), self.height())
status = glCheckFramebufferStatus(... | python | def paintGL(self):
'''GL function called each time a frame is drawn'''
if self.post_processing:
# Render to the first framebuffer
glBindFramebuffer(GL_FRAMEBUFFER, self.fb0)
glViewport(0, 0, self.width(), self.height())
status = glCheckFramebufferStatus(... | [
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16,281 | chemlab/chemlab | chemlab/graphics/qt/qchemlabwidget.py | QChemlabWidget.toimage | def toimage(self, width=None, height=None):
'''Return the current scene as a PIL Image.
**Example**
You can build your molecular viewer as usual and dump an image
at any resolution supported by the video card (up to the
memory limits)::
v = QtViewer()
... | python | def toimage(self, width=None, height=None):
'''Return the current scene as a PIL Image.
**Example**
You can build your molecular viewer as usual and dump an image
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v = QtViewer()
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16,282 | chemlab/chemlab | chemlab/md/ewald.py | _real | def _real(coords1, charges1, coords2, charges2, rcut, alpha, box):
"""Calculate ewald real part. Box has to be a cuboidal box you should
transform any other box shape to a cuboidal box before using this.
"""
n = coords1.shape[0]
m = coords2.shape[0]
# Unit vectors
a = box[0]
b = box... | python | def _real(coords1, charges1, coords2, charges2, rcut, alpha, box):
"""Calculate ewald real part. Box has to be a cuboidal box you should
transform any other box shape to a cuboidal box before using this.
"""
n = coords1.shape[0]
m = coords2.shape[0]
# Unit vectors
a = box[0]
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16,283 | chemlab/chemlab | chemlab/md/ewald.py | _reciprocal | def _reciprocal(coords1, charges1, coords2, charges2, kmax, kappa, box):
"""Calculate ewald reciprocal part. Box has to be a cuboidal box you should
transform any other box shape to a cuboidal box before using this.
"""
n = coords1.shape[0]
m = coords2.shape[0]
result = np.zeros(n, dtype=np... | python | def _reciprocal(coords1, charges1, coords2, charges2, kmax, kappa, box):
"""Calculate ewald reciprocal part. Box has to be a cuboidal box you should
transform any other box shape to a cuboidal box before using this.
"""
n = coords1.shape[0]
m = coords2.shape[0]
result = np.zeros(n, dtype=np... | [
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16,284 | chemlab/chemlab | chemlab/graphics/renderers/cylinder.py | CylinderRenderer.update_bounds | def update_bounds(self, bounds):
'''Update cylinders start and end positions
'''
starts = bounds[:,0,:]
ends = bounds[:,1,:]
self.bounds = bounds
self.lengths = np.sqrt(((ends - starts)**2).sum(axis=1))
vertices, normals, colors = self._process_refere... | python | def update_bounds(self, bounds):
'''Update cylinders start and end positions
'''
starts = bounds[:,0,:]
ends = bounds[:,1,:]
self.bounds = bounds
self.lengths = np.sqrt(((ends - starts)**2).sum(axis=1))
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16,285 | chemlab/chemlab | chemlab/io/trajectory.py | make_trajectory | def make_trajectory(first, filename, restart=False):
'''Factory function to easily create a trajectory object'''
mode = 'w'
if restart:
mode = 'a'
return Trajectory(first, filename, mode) | python | def make_trajectory(first, filename, restart=False):
'''Factory function to easily create a trajectory object'''
mode = 'w'
if restart:
mode = 'a'
return Trajectory(first, filename, mode) | [
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16,286 | chemlab/chemlab | chemlab/db/utils.py | InsensitiveDict.has_key | def has_key(self, key):
"""Case insensitive test whether 'key' exists."""
k = self._lowerOrReturn(key)
return k in self.data | python | def has_key(self, key):
"""Case insensitive test whether 'key' exists."""
k = self._lowerOrReturn(key)
return k in self.data | [
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16,287 | chemlab/chemlab | chemlab/graphics/renderers/sphere.py | SphereRenderer.update_positions | def update_positions(self, positions):
'''Update the sphere positions.
'''
sphs_verts = self.sphs_verts_radii.copy()
sphs_verts += positions.reshape(self.n_spheres, 1, 3)
self.tr.update_vertices(sphs_verts)
self.poslist = positions | python | def update_positions(self, positions):
'''Update the sphere positions.
'''
sphs_verts = self.sphs_verts_radii.copy()
sphs_verts += positions.reshape(self.n_spheres, 1, 3)
self.tr.update_vertices(sphs_verts)
self.poslist = positions | [
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16,288 | chemlab/chemlab | chemlab/core/serialization.py | isnamedtuple | def isnamedtuple(obj):
"""Heuristic check if an object is a namedtuple."""
return isinstance(obj, tuple) \
and hasattr(obj, "_fields") \
and hasattr(obj, "_asdict") \
and callable(obj._asdict) | python | def isnamedtuple(obj):
"""Heuristic check if an object is a namedtuple."""
return isinstance(obj, tuple) \
and hasattr(obj, "_fields") \
and hasattr(obj, "_asdict") \
and callable(obj._asdict) | [
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16,289 | chemlab/chemlab | chemlab/md/analysis.py | running_coordination_number | def running_coordination_number(coordinates_a, coordinates_b, periodic,
binsize=0.002, cutoff=1.5):
"""This is the cumulative radial distribution
function, also called running coordination number"""
x, y = rdf(coordinates_a,
coordinates_b,
peri... | python | def running_coordination_number(coordinates_a, coordinates_b, periodic,
binsize=0.002, cutoff=1.5):
"""This is the cumulative radial distribution
function, also called running coordination number"""
x, y = rdf(coordinates_a,
coordinates_b,
peri... | [
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16,290 | chemlab/chemlab | chemlab/graphics/renderers/line.py | LineRenderer.update_colors | def update_colors(self, colors):
"""Update the colors"""
colors = np.array(colors, dtype=np.uint8)
self._vbo_c.set_data(colors)
self._vbo_c.unbind() | python | def update_colors(self, colors):
"""Update the colors"""
colors = np.array(colors, dtype=np.uint8)
self._vbo_c.set_data(colors)
self._vbo_c.unbind() | [
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16,291 | chemlab/chemlab | chemlab/mviewer/api/core.py | frames | def frames(skip=1):
'''Useful command to iterate on the trajectory frames. It can be
used in a for loop.
::
for i in frames():
coords = current_trajectory()[i]
# Do operation on coords
You can use the option *skip* to take every i :sup:`th` frame.
'''
... | python | def frames(skip=1):
'''Useful command to iterate on the trajectory frames. It can be
used in a for loop.
::
for i in frames():
coords = current_trajectory()[i]
# Do operation on coords
You can use the option *skip* to take every i :sup:`th` frame.
'''
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16,292 | chemlab/chemlab | chemlab/mviewer/api/display.py | display_system | def display_system(system, autozoom=True):
'''Display a `~chemlab.core.System` instance at screen'''
viewer.clear()
viewer.add_representation(BallAndStickRepresentation, system)
if autozoom:
autozoom_()
viewer.update()
msg(str(system)) | python | def display_system(system, autozoom=True):
'''Display a `~chemlab.core.System` instance at screen'''
viewer.clear()
viewer.add_representation(BallAndStickRepresentation, system)
if autozoom:
autozoom_()
viewer.update()
msg(str(system)) | [
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16,293 | chemlab/chemlab | chemlab/mviewer/api/display.py | display_molecule | def display_molecule(mol, autozoom=True):
'''Display a `~chemlab.core.Molecule` instance in the viewer.
This function wraps the molecule in a system before displaying
it.
'''
s = System([mol])
display_system(s, autozoom=True) | python | def display_molecule(mol, autozoom=True):
'''Display a `~chemlab.core.Molecule` instance in the viewer.
This function wraps the molecule in a system before displaying
it.
'''
s = System([mol])
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16,294 | chemlab/chemlab | chemlab/mviewer/api/display.py | load_molecule | def load_molecule(name, format=None):
'''Read a `~chemlab.core.Molecule` from a file.
.. seealso:: `chemlab.io.datafile`
'''
mol = datafile(name, format=format).read('molecule')
display_system(System([mol])) | python | def load_molecule(name, format=None):
'''Read a `~chemlab.core.Molecule` from a file.
.. seealso:: `chemlab.io.datafile`
'''
mol = datafile(name, format=format).read('molecule')
display_system(System([mol])) | [
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16,295 | chemlab/chemlab | chemlab/mviewer/api/display.py | write_system | def write_system(filename, format=None):
'''Write the system currently displayed to a file.'''
datafile(filename, format=format, mode='w').write('system',
current_system()) | python | def write_system(filename, format=None):
'''Write the system currently displayed to a file.'''
datafile(filename, format=format, mode='w').write('system',
current_system()) | [
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16,296 | chemlab/chemlab | chemlab/mviewer/api/display.py | write_molecule | def write_molecule(filename, format=None):
'''Write the system displayed in a file as a molecule.'''
datafile(filename, format=format,
mode='w').write('molecule',current_system()) | python | def write_molecule(filename, format=None):
'''Write the system displayed in a file as a molecule.'''
datafile(filename, format=format,
mode='w').write('molecule',current_system()) | [
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16,297 | chemlab/chemlab | chemlab/mviewer/api/display.py | load_trajectory | def load_trajectory(name, skip=1, format=None):
'''Load a trajectory file into chemlab. You should call this
command after you load a `~chemlab.core.System` through
load_system or load_remote_system.
'''
df = datafile(name, format=format)
dt, coords = df.read('trajectory', skip=skip)
boxes ... | python | def load_trajectory(name, skip=1, format=None):
'''Load a trajectory file into chemlab. You should call this
command after you load a `~chemlab.core.System` through
load_system or load_remote_system.
'''
df = datafile(name, format=format)
dt, coords = df.read('trajectory', skip=skip)
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16,298 | chemlab/chemlab | chemlab/core/system.py | System.from_arrays | def from_arrays(cls, **kwargs):
'''Initialize a System from its constituent arrays. It is the
fastest way to initialize a System, well suited for
reading one or more big System from data files.
**Parameters**
The following parameters are required:
- ty... | python | def from_arrays(cls, **kwargs):
'''Initialize a System from its constituent arrays. It is the
fastest way to initialize a System, well suited for
reading one or more big System from data files.
**Parameters**
The following parameters are required:
- ty... | [
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16,299 | chemlab/chemlab | chemlab/core/system.py | System.minimum_image | def minimum_image(self):
"""Align the system according to the minimum image convention"""
if self.box_vectors is None:
raise ValueError('No periodic vectors defined')
else:
self.r_array = minimum_image(self.r_array, self.box_vectors.diagonal())
return sel... | python | def minimum_image(self):
"""Align the system according to the minimum image convention"""
if self.box_vectors is None:
raise ValueError('No periodic vectors defined')
else:
self.r_array = minimum_image(self.r_array, self.box_vectors.diagonal())
return sel... | [
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