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The dorsal raphe nucleus is the predominant source of central serotonin , where neuronal activity regulates complex emotional behaviors . Action potential firing of serotonin dorsal raphe neurons is driven via α1-adrenergic receptors ( α1-AR ) activation . Despite this crucial role , the ion channels responsible for α1... | Serotonin is a chemical that allows cells to communicate in the nervous system of many animals . It is also particularly important in the treatment of mental health disorders: a large number of antidepressants work by preventing nerve cells from clearing away serotonin , therefore increasing the overall level of the mo... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"structural",
"biology",
"and",
"molecular",
"biophysics",
"neuroscience"
] | 2020 | Delta glutamate receptor conductance drives excitation of mouse dorsal raphe neurons |
We have designed a membrane ‘staple’ , which consists of membrane-anchored repeats of the trans-aggregating FM domain that face the lumen of the secretory pathway . In the presence of the disaggregating drug these proteins transit the secretory pathway . When the drug is removed these proteins form electron-dense plaqu... | Most plant and animal cells contain an organelle known as the Golgi apparatus , which consists of a series of four to six stacked cisternae . Almost all the proteins that are secreted from the cell , or targeted to its plasma membrane , transit through the Golgi . This process takes roughly 5–20 min . Although transpor... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology"
] | 2013 | Stapled Golgi cisternae remain in place as cargo passes through the stack |
Planar cell polarity ( PCP ) requires the asymmetric sorting of distinct signaling receptors to distal and proximal surfaces of polarized epithelial cells . We have examined the transport of one PCP signaling protein , Vangl2 , from the trans Golgi network ( TGN ) in mammalian cells . Using siRNA knockdown experiments ... | Most cells in multicellular organisms possess a property known as polarity that is reflected , in part , in the organization of the cell surface into distinct domains . One well-known axis in epithelial cells , such as those in the skin , divides the cell into an apical domain , which faces out , and a basal domain , w... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology",
"cell",
"biology"
] | 2013 | A novel GTP-binding protein–adaptor protein complex responsible for export of Vangl2 from the trans Golgi network |
Genome-encoded microRNAs ( miRNAs ) provide a posttranscriptional regulatory layer that controls the differentiation and function of various cellular systems , including hematopoietic cells . miR-142 is one of the most prevalently expressed miRNAs within the hematopoietic lineage . To address the in vivo functions of m... | DNA carries all the information needed for life . This includes the codes required for making proteins , as well as instructions on when , where , and how much of these proteins need to be produced . There are a number of ways by which cells control protein manufacturing , one of which is based on small RNAs called mic... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology",
"cell",
"biology"
] | 2014 | miR-142 orchestrates a network of actin cytoskeleton regulators during megakaryopoiesis |
The Nef protein of HIV-1 downregulates the cell surface co-receptor CD4 by hijacking the clathrin adaptor complex AP-2 . The structural basis for the hijacking of AP-2 by Nef is revealed by a 2 . 9 Å crystal structure of Nef bound to the α and σ2 subunits of AP-2 . Nef binds to AP-2 via its central loop ( residues 149–... | Infection by a pathogen , such as a bacterium or virus , activates both the innate immune response—which is immediate but not specific to the pathogen—and the adaptive immune response , which is stronger and specific to the pathogen . White blood cells called CD4+ T helper cells play an important role in the early stag... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"structural",
"biology",
"and",
"molecular",
"biophysics"
] | 2014 | How HIV-1 Nef hijacks the AP-2 clathrin adaptor to downregulate CD4 |
Increased expression of Down Syndrome Cell Adhesion Molecule ( Dscam ) is implicated in the pathogenesis of brain disorders such as Down syndrome ( DS ) and fragile X syndrome ( FXS ) . Here , we show that the cellular defects caused by dysregulated Dscam levels can be ameliorated by genetic and pharmacological inhibit... | Information is transmitted through the brain by cells called neurons , which are connected into specific circuits and networks . As the brain develops , several different signaling molecules control how the connections between neurons develop . If these signals occur at the wrong time or wrong place , or in the wrong a... | [
"Abstract",
"Introduction",
"Results",
"and",
"discussion",
"Materials",
"and",
"methods"
] | [
"short",
"report",
"neuroscience"
] | 2015 | Dysregulated Dscam levels act through Abelson tyrosine kinase to enlarge presynaptic arbors |
The development and morphology of vascular plants is critically determined by synthesis and proper distribution of the phytohormone auxin . The directed cell-to-cell distribution of auxin is achieved through a system of auxin influx and efflux transporters . PIN-FORMED ( PIN ) proteins are proposed auxin efflux transpo... | In plants , a hormone called auxin controls the growth of the stems and roots . This chemical is transported from cell to cell , and its flow though the plant is redirected continuously as the plant is developing . Auxin is pumped out of cells by proteins in the cell membrane called ‘auxin efflux carriers’ . These prot... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"plant",
"biology"
] | 2014 | Auxin efflux by PIN-FORMED proteins is activated by two different protein kinases, D6 PROTEIN KINASE and PINOID |
Mitochondrial deficits in energy production cause untreatable and fatal pathologies known as mitochondrial disease ( MD ) . Central nervous system affectation is critical in Leigh Syndrome ( LS ) , a common MD presentation , leading to motor and respiratory deficits , seizures and premature death . However , only speci... | Mitochondria are often described as the power plants of cells because they generate most of the energy that a cell needs to survive . But one in every 5 , 000 children is born with a mutation that leads to faulty mitochondria , which generate less energy than their healthy counterparts . This is particularly problemati... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2019 | Defined neuronal populations drive fatal phenotype in a mouse model of Leigh syndrome |
In the human fungal pathogen Cryptococcus neoformans , sex can benefit its pathogenicity through production of meiospores , which are believed to offer both physical and meiosis-created lineage advantages for its infections . Cryptococcus sporulation occurs following two parallel events , meiosis and differentiation of... | Many microbes that cause disease form spores to survive during and between infections . These include the fungus Cryptococcus neoformans , which is the leading cause of fungal meningitis worldwide . This fungus produces spores via sexual reproduction , meaning the genes from two living strains of the fungi combine to c... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"microbiology",
"and",
"infectious",
"disease"
] | 2018 | Genetic basis for coordination of meiosis and sexual structure maturation in Cryptococcus neoformans |
Visual predators rely on fast-acting optokinetic responses to track and capture agile prey . Most toothed whales , however , rely on echolocation for hunting and have converged on biosonar clicking rates reaching 500/s during prey pursuits . If echoes are processed on a click-by-click basis , as assumed , neural respon... | In the animal world , split-second decisions determine whether a predator eats , or its prey survives . There is a strong evolutionary advantage to fast reacting brains and bodies . For example , the eye muscles of hunting cheetahs must lock on to a gazelle and keep track of it , no matter how quickly or unpredictably ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"ecology"
] | 2021 | Echolocating toothed whales use ultra-fast echo-kinetic responses to track evasive prey |
The function of microtubules relies on their ability to switch between phases of growth and shrinkage . A nucleotide-dependent stabilising cap at microtubule ends is thought to be lost before this switch can occur; however , the nature and size of this protective cap are unknown . Using a microfluidics-assisted multi-c... | Much like the skeleton supports the human body , a structure called the cytoskeleton provides support and structure to cells . Part of this cytoskeleton is made up of small tubes called microtubules that – unlike bones – can shrink and grow very quickly . This allows the cell to change shape , move and split into two n... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology",
"structural",
"biology",
"and",
"molecular",
"biophysics"
] | 2016 | The size of the EB cap determines instantaneous microtubule stability |
We generated a library of ~1000 Drosophila stocks in which we inserted a construct in the intron of genes allowing expression of GAL4 under control of endogenous promoters while arresting transcription with a polyadenylation signal 3’ of the GAL4 . This allows numerous applications . First , ~90% of insertions in essen... | Determining what role newly discovered genes play in the body is an important part of genetics . This task requires a lot of extra information about each gene , such as the specific cells where the gene is active , or what happens when the gene is deleted . To answer these questions , researchers need tools and methods... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"chromosomes",
"and",
"gene",
"expression",
"tools",
"and",
"resources"
] | 2018 | A gene-specific T2A-GAL4 library for Drosophila |
Flatworms number among the most diverse invertebrate phyla and represent the most biomedically significant branch of the major bilaterian clade Spiralia , but to date , deep evolutionary relationships within this group have been studied using only a single locus ( the rRNA operon ) , leaving the origins of many key cla... | Flatworms are relatively simple invertebrates with soft bodies . They can be found living in nearly every aquatic environment on the planet , are well-known for their ability to regenerate , and some species live as parasites in humans and other animals . Studies of the physical characteristics of flatworms have provid... | [
"Abstract",
"Introduction",
"Results",
"and",
"discussion",
"Materials",
"and",
"methods"
] | [
"genetics",
"and",
"genomics"
] | 2015 | Nuclear genomic signals of the ‘microturbellarian’ roots of platyhelminth evolutionary innovation |
Lysergic acid diethylamide ( LSD ) has agonist activity at various serotonin ( 5-HT ) and dopamine receptors . Despite the therapeutic and scientific interest in LSD , specific receptor contributions to its neurobiological effects remain unknown . We therefore conducted a double-blind , randomized , counterbalanced , c... | The psychedelic drug LSD alters thinking and perception . Users can experience hallucinations , in which they , for example , see things that are not there . Colors , sounds and objects can appear distorted , and time can seem to speed up or slow down . These changes bear some resemblance to the changes in thinking and... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"medicine",
"neuroscience"
] | 2018 | Changes in global and thalamic brain connectivity in LSD-induced altered states of consciousness are attributable to the 5-HT2A receptor |
Understanding the fate of exogenous cells after implantation is important for clinical applications . Preclinical studies allow imaging of cell location and survival . Labelling with nanoparticles enables high sensitivity detection , but cell division and cell death cause signal dilution and false positives . By contra... | Many scientists are studying the possibility of using human cells to treat diseases . For example , using stem cells to regenerate damaged body parts or genetically engineered immune cells to destroy cancer . Scientists need new tools to track what happens to these cells once they have been injected into a laboratory a... | [
"Abstract",
"Introduction",
"Results",
"and",
"discussion",
"Materials",
"and",
"methods"
] | [
"stem",
"cells",
"and",
"regenerative",
"medicine",
"tools",
"and",
"resources",
"cancer",
"biology"
] | 2018 | Multimodal cell tracking from systemic administration to tumour growth by combining gold nanorods and reporter genes |
Acquisition of pluripotency is driven largely at the transcriptional level by activators OCT4 , SOX2 , and NANOG that must in turn cooperate with diverse coactivators to execute stem cell-specific gene expression programs . Using a biochemically defined in vitro transcription system that mediates OCT4/SOX2 and coactiva... | The stem cells found in an embryo are able to develop into any of the cell types found in the body of the animal: an ability called pluripotency . When a cell becomes a specialized cell type , such as a nerve cell or a muscle cell , it loses this ability . However , mature cells can be reprogrammed back to a pluripoten... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"stem",
"cells",
"and",
"regenerative",
"medicine",
"biochemistry",
"and",
"chemical",
"biology"
] | 2014 | The dyskerin ribonucleoprotein complex as an OCT4/SOX2 coactivator in embryonic stem cells |
Gene expression is precisely regulated during the inflammatory response to control infection and limit the detrimental effects of inflammation . Here , we profiled global mRNA translation dynamics in the mouse primary macrophage-mediated inflammatory response and identified hundreds of differentially translated mRNAs .... | DNA sequences called genes produce RNA molecules , some of which ( the “messenger RNAs” ) go on to be ‘translated’ to make proteins . This gene activity enables cells to react to their surroundings . For example , immune cells called macrophages produce hundreds of RNA molecules and proteins as part of an inflammatory ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Material",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology"
] | 2017 | Translation repression via modulation of the cytoplasmic poly(A)-binding protein in the inflammatory response |
Mutational activation of the BRAF proto-oncogene in melanocytes reliably produces benign nevi ( pigmented ‘moles’ ) , yet the same change is the most common driver mutation in melanoma . The reason nevi stop growing , and do not progress to melanoma , is widely attributed to a cell-autonomous process of ‘oncogene-induc... | Melanocytes are pigment-producing cells found throughout the skin . Mutations that activate a gene called BRAF cause these cells to divide and produce melanocytic nevi , also known as “moles” . These mutations are oncogenic , meaning they can cause cancer . Indeed , BRAF is the most commonly mutated gene in melanoma , ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"computational",
"and",
"systems",
"biology",
"cancer",
"biology"
] | 2020 | Dynamics of nevus development implicate cell cooperation in the growth arrest of transformed melanocytes |
Cancer poses danger because of its unregulated growth , development of resistance , and metastatic spread to vital organs . We currently lack quantitative theory for how preventive measures and post-diagnostic interventions are predicted to affect risks of a life threatening cancer . Here we evaluate how continuous mea... | About one person in every two will get cancer during their lives . Surgery and chemotherapy have long been mainstays of cancer treatment . Both , however , have substantial downsides . Surgery may leave behind undetected cancer cells that can grow into new tumours . Furthermore , in response to chemotherapy drugs , som... | [
"Abstract",
"Introduction",
"Modeling",
"framework",
"Results",
"Discussion"
] | [
"computational",
"and",
"systems",
"biology"
] | 2015 | Dynamics of preventive vs post-diagnostic cancer control using low-impact measures |
Human sound localization is an important computation performed by the brain . Models of sound localization commonly assume that sound lateralization from interaural time differences is level invariant . Here we observe that two prevalent theories of sound localization make opposing predictions . The labelled-line model... | Being able to localize sounds helps us make sense of the world around us . The brain works out sound direction by comparing the times of when sound reaches the left versus the right ear . This cue is known as interaural time difference , or ITD for short . But how exactly the brain decodes this information is still unk... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2019 | Population rate-coding predicts correctly that human sound localization depends on sound intensity |
We dissected the importance of human telomerase biogenesis and trafficking pathways for telomere maintenance . Biological stability of human telomerase RNA ( hTR ) relies on H/ACA proteins , but other eukaryotes use other RNP assembly pathways . To investigate additional rationale for human telomerase assembly as H/ACA... | Most cells in the human body can only divide a certain number of times before they die . This is because regions called telomeres at the ends of the cell’s DNA get shorter every time the cell divides , to the point that they disappear and halt cell growth . Particular types of cells – including some stem cells and canc... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"chromosomes",
"and",
"gene",
"expression"
] | 2016 | Minimized human telomerase maintains telomeres and resolves endogenous roles of H/ACA proteins, TCAB1, and Cajal bodies |
Zika virus was discovered in Uganda in 1947 and is transmitted by Aedes mosquitoes , which also act as vectors for dengue and chikungunya viruses throughout much of the tropical world . In 2007 , an outbreak in the Federated States of Micronesia sparked public health concern . In 2013 , the virus began to spread across... | Zika virus is transmitted between humans by mosquitoes . The majority of infections cause mild flu-like symptoms , but neurological complications in adults and infants have been found in recent outbreaks . Although it was discovered in Uganda in 1947 , Zika only caused sporadic infections in humans until 2007 , when it... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"epidemiology",
"and",
"global",
"health",
"microbiology",
"and",
"infectious",
"disease"
] | 2016 | Mapping global environmental suitability for Zika virus |
Event-related potentials ( ERPs ) are widely used in both healthy and neuropsychiatric conditions as physiological indices of cognitive functions . Contrary to the common belief that cognitive ERPs are generated by local activity within the cerebral cortex , here we show that an attention-related ERP in the frontal cor... | The vertebrate nervous system coordinates an animal’s involuntary and voluntary actions , and is responsible for transmitting signals between different parts of the body . Two different cell types , glial cells and neurons , make up the nervous system: glial cells play a metabolic or structural role , whereas neurons a... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2014 | A frontal cortex event-related potential driven by the basal forebrain |
Transcriptome and genome data from twenty stony coral species and a selection of reference bilaterians were studied to elucidate coral evolutionary history . We identified genes that encode the proteins responsible for the precipitation and aggregation of the aragonite skeleton on which the organisms live , and reveale... | For millions of years , reef-building stony corals have created extensive habitats for numerous marine plants and animals in shallow tropical seas . Stony corals consist of many small , tentacled animals called polyps . These polyps secrete a mineral called aragonite to create the reef – an external ‘skeleton’ that sup... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"ecology",
"evolutionary",
"biology"
] | 2016 | Comparative genomics explains the evolutionary success of reef-forming corals |
Mitochondrial Ca2+ uptake , a process crucial for bioenergetics and Ca2+ signaling , is catalyzed by the mitochondrial calcium uniporter . The uniporter is a multi-subunit Ca2+-activated Ca2+ channel , with the Ca2+ pore formed by the MCU protein and Ca2+-dependent activation mediated by MICU subunits . Recently , a mi... | Like all power plants , mitochondria – the compartments inside our cells that supply energy – must adjust their energy output to match fluctuations in demand . Inside cells , the levels of calcium ions in the cytoplasm often signal such demands . Mitochondria therefore control their calcium ion levels with tightly regu... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology"
] | 2016 | Dual functions of a small regulatory subunit in the mitochondrial calcium uniporter complex |
Missense mutations in ATM kinase , a master regulator of DNA damage responses , are found in many cancers , but their impact on ATM function and implications for cancer therapy are largely unknown . Here we report that 72% of cancer-associated ATM mutations are missense mutations that are enriched around the kinase dom... | Cancer is a genetic disease . To remain healthy , therefore , it is essential that cells do not accrue too many dangerous mutations in their DNA that allow cancers to grow and develop . An enzyme called ATM helps to do just that . DNA damage activates ATM , which , in turn , adds phosphate groups to other proteins . Th... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology"
] | 2016 | Kinase-dead ATM protein is highly oncogenic and can be preferentially targeted by Topo-isomerase I inhibitors |
The epithelial sodium channel ( ENaC ) , a member of the ENaC/DEG superfamily , regulates Na+ and water homeostasis . ENaCs assemble as heterotrimeric channels that harbor protease-sensitive domains critical for gating the channel . Here , we present the structure of human ENaC in the uncleaved state determined by sing... | The bodies of humans and other animals contain many different fluids that play vital roles in the body , such as blood , saliva and the fluids that surround cells in organs . These fluids all contain particles called ions , which can affect the flow of water into and out of cells and alter the activity of proteins . Th... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"structural",
"biology",
"and",
"molecular",
"biophysics"
] | 2018 | Structure of the human epithelial sodium channel by cryo-electron microscopy |
The bacterial flagellar motor , a cell-envelope-embedded macromolecular machine that functions as a cellular propeller , exhibits significant structural variability between species . Different torque-generating stator modules allow motors to operate in different pH , salt or viscosity levels . How such diversity evolve... | Bacteria are so small that for them , making their way through water is like swimming in roofing tar for us . In response , these organisms have evolved a molecular machine that helps them move in their environment . Named the bacterial flagellum , this complex assemblage of molecules is formed of three main parts: a m... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"evolutionary",
"biology",
"short",
"report",
"microbiology",
"and",
"infectious",
"disease"
] | 2019 | The presence and absence of periplasmic rings in bacterial flagellar motors correlates with stator type |
Memory dysfunction is a key symptom of age-related dementia . Although recent studies have suggested positive effects of electrical stimulation for memory enhancement , its potential targets remain largely unknown . In this study , we hypothesized that spatially targeted deep brain stimulation of ventromedial prefronta... | Memory loss in older people is a serious and widespread problem that affects up to 50% of those over the age of 85 . It is a key symptom of dementia , but despite the growing impact of this disease on society , there are no treatments currently available that can effectively stop or delay the progression of the symptom... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2015 | Ventromedial prefrontal cortex stimulation enhances memory and hippocampal neurogenesis in the middle-aged rats |
Alteration of antibiotic binding sites through modification of ribosomal RNA ( rRNA ) is a common form of resistance to ribosome-targeting antibiotics . The rRNA-modifying enzyme Cfr methylates an adenosine nucleotide within the peptidyl transferase center , resulting in the C-8 methylation of A2503 ( m8A2503 ) . Acqui... | Antibiotics treat or prevent infections by killing bacteria or slowing down their growth . A large proportion of these drugs do this by disrupting an essential piece of cellular machinery called the ribosome which the bacteria need to make proteins . However , over the course of the treatment , some bacteria may gain g... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology",
"structural",
"biology",
"and",
"molecular",
"biophysics"
] | 2022 | Directed evolution of the rRNA methylating enzyme Cfr reveals molecular basis of antibiotic resistance |
To persist in microbial communities , the bacterial pathogen Legionella pneumophila must withstand competition from neighboring bacteria . Here , we find that L . pneumophila can antagonize the growth of other Legionella species using a secreted inhibitor: HGA ( homogentisic acid ) . Unexpectedly , L . pneumophila can ... | In the environment , bacteria frequently compete with each other for resources and space . These battles often involve the bacteria releasing toxins , antibiotics or other molecules that make it more difficult for their neighbors to grow . The bacteria also carry specific resistance genes that protect them from the eff... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"microbiology",
"and",
"infectious",
"disease"
] | 2019 | Density-dependent resistance protects Legionella pneumophila from its own antimicrobial metabolite, HGA |
The cullin-RING ligases ( CRLs ) form the major family of E3 ubiquitin ligases . The prototypic CRLs in yeast , called SCF enzymes , employ a single E2 enzyme , Cdc34 , to build poly-ubiquitin chains required for degradation . In contrast , six different human E2 and E3 enzyme activities , including Cdc34 orthologs UBE... | Proteins are the molecules that perform most of the tasks that keep cells alive , but often they need to be removed . If human cells lose control over protein degradation it can result in diseases such as cancer or neurodegenerative disorders . The enzymes responsible for tagging proteins for destruction are called ubi... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology",
"cell",
"biology"
] | 2019 | Robust cullin-RING ligase function is established by a multiplicity of poly-ubiquitylation pathways |
Tumor-initiating cells ( TIC ) are dynamic cancer cell subsets that display enhanced tumor functions and resilience to treatment but the mechanism of TIC induction or maintenance in lung cancer is not fully understood . In this study , we show the calcium pathway transcription factor NFATc2 is a novel regulator of lung... | Cancer develops when cells become faulty and start to grow uncontrollably . They eventually form lumps or tumors , which may spread to surrounding tissues or even to other areas in the body . One of the reasons why cancer treatment remains a challenge is that there are over 200 types of cells in the body , and there ar... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cancer",
"biology"
] | 2017 | NFATc2 enhances tumor-initiating phenotypes through the NFATc2/SOX2/ALDH axis in lung adenocarcinoma |
The replicative lifespan ( RLS ) of a cell—defined as the number of cell divisions before death—has informed our understanding of the mechanisms of cellular aging . However , little is known about aging and longevity in symmetrically dividing eukaryotic cells because most prior studies have used budding yeast for RLS s... | As the cells in our bodies age , their ability to carry out their normal processes also degrades . Ultimately , this causes tissues to deteriorate . How rapidly a cell ages depends on the genes encoded in its DNA , and can also be affected by certain drug treatments . Cells reproduce by dividing to form two new cells .... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology",
"tools",
"and",
"resources"
] | 2017 | An aging-independent replicative lifespan in a symmetrically dividing eukaryote |
Whether retrieval still depends on the hippocampus as memories age or relies then on cortical areas remains a major controversy . Despite evidence for a functional segregation between CA1 , CA3 and parahippocampal areas , their specific role within this frame is unclear . Especially , the contribution of CA3 is questio... | There are two schools of thought about what role the hippocampus – a region of the brain – plays in memory . Some neuroscientists think that it is involved in retrieving all memories . Others believe that its contribution is restricted to the retrieval of recent memories , while a neighboring part of the brain called t... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2016 | Imaging a memory trace over half a life-time in the medial temporal lobe reveals a time-limited role of CA3 neurons in retrieval |
The actomyosin cytoskeleton is a primary force-generating mechanism in morphogenesis , thus a robust spatial control of cytoskeletal positioning is essential . In this report , we demonstrate that actomyosin contractility and planar cell polarity ( PCP ) interact in post-mitotic Ciona notochord cells to self-assemble a... | Animal cells can move , and cell movements are particularly important during the early stages of development , when the developing embryo rapidly changes shape . These movements depend on a network of fibers made up of a protein called actin . Just like an animal's skeleton , this network provides an internal scaffold ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology",
"structural",
"biology",
"and",
"molecular",
"biophysics"
] | 2015 | Assembly and positioning of actomyosin rings by contractility and planar cell polarity |
Voltage-gated potassium ( Kv ) channels enable potassium efflux and membrane repolarization in excitable tissues . Many Kv channels undergo a progressive loss of ion conductance in the presence of a prolonged voltage stimulus , termed slow inactivation , but the atomic determinants that regulate the kinetics of this pr... | Proteins are made from long chains of smaller molecules , called amino acids . These chains twist and bend into complex three-dimensional shapes , and sometimes two or more chains , or ‘subunits’ , are packed into a protein . These shapes are often held together by hydrogen bonds between some of the amino acids . Moreo... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
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] | [
"biochemistry",
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"chemical",
"biology",
"structural",
"biology",
"and",
"molecular",
"biophysics"
] | 2013 | Hydrogen bonds as molecular timers for slow inactivation in voltage-gated potassium channels |
Cerebral malaria ( CM ) can be classified as retinopathy-positive or retinopathy-negative , based on the presence or absence of characteristic retinal features . While malaria parasites are considered central to the pathogenesis of retinopathy-positive CM , their contribution to retinopathy-negative CM is largely unkno... | Malaria is a life-threatening disease caused by a parasite that is transferred between people by infected mosquitoes . Most infected individuals suffer flu-like symptoms , but in rare cases malaria can affect the brain , resulting in brain damage , coma or death . The World Health Organization defines a person as suffe... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"short",
"report",
"epidemiology",
"and",
"global",
"health"
] | 2017 | Evidence from a natural experiment that malaria parasitemia is pathogenic in retinopathy-negative cerebral malaria |
Candida albicans hyphae can reach enormous lengths , precluding their internalization by phagocytes . Nevertheless , macrophages engulf a portion of the hypha , generating incompletely sealed tubular phagosomes . These frustrated phagosomes are stabilized by a thick cuff of F-actin that polymerizes in response to non-c... | Billions of microorganisms live on , and in , the human body . Known as the human microbiome , most of these microscopic hitchhikers are harmless . But , for people with a compromised immune system , common species can sometimes cause disease . For example , the yeast Candida albicans , which colonises between 30 and 7... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology"
] | 2018 | Integrin-based diffusion barrier separates membrane domains enabling the formation of microbiostatic frustrated phagosomes |
In social groups , infections have the potential to spread rapidly and cause disease outbreaks . Here , we show that in a social insect , the ant Lasius neglectus , the negative consequences of fungal infections ( Metarhizium brunneum ) can be mitigated by employing an efficient multicomponent behaviour , termed destru... | Ants live in crowded societies where disease can spread rapidly and take a heavy toll on the community . Ants have a number of ways to prevent these outbreaks before they become a problem . Like many other social species , they practice good hygiene and groom nest mates that have picked up a pathogen , which helps them... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"evolutionary",
"biology"
] | 2018 | Destructive disinfection of infected brood prevents systemic disease spread in ant colonies |
The populations of light-demanding trees that dominate the canopy of central African forests are now aging . Here , we show that the lack of regeneration of these populations began ca . 165 ya ( around 1850 ) after major anthropogenic disturbances ceased . Since 1885 , less itinerancy and disturbance in the forest has ... | The world’s forests contain trillions of trees . Some of those trees require more light than others to mature , and certain species can only grow to reach the forest canopy if they have access to sunlight throughout their whole life . Central Africa is home to the second largest tropical rainforest in the world . Previ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"ecology",
"plant",
"biology"
] | 2017 | Present-day central African forest is a legacy of the 19th century human history |
Long distance transport in plants occurs in sieve tubes of the phloem . The pressure flow hypothesis introduced by Ernst Münch in 1930 describes a mechanism of osmotically generated pressure differentials that are supposed to drive the movement of sugars and other solutes in the phloem , but this hypothesis has long fa... | Plants use energy from sunlight to make sugars in a process called photosynthesis . Most photosynthesis takes place in the leaves and so much of the sugar needs to be transported to other parts of the plant , such as fruits or roots . The sugars are transported by phloem tubes , which form a system that spans the entir... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"plant",
"biology"
] | 2016 | Testing the Münch hypothesis of long distance phloem transport in plants |
Three amino acid loop extension homeodomain transcription factors ( TALE HD TFs ) act as life cycle regulators in green algae and land plants . In mosses these regulators are required for the deployment of the sporophyte developmental program . We demonstrate that mutations in either of two TALE HD TF genes , OUROBOROS... | Brown algae and land plants are two groups of multicellular organisms that have been evolving independently for over a billion years . Their last common ancestor is thought to have existed as a single cell; then , complex multicellular organisms would have appeared separately in each lineage . Comparing brown algae and... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"plant",
"biology"
] | 2019 | Convergent recruitment of TALE homeodomain life cycle regulators to direct sporophyte development in land plants and brown algae |
N-Methyl-D-aspartate receptors ( NMDA-Rs ) are ion channels that are important for synaptic plasticity , which is involved in learning and drug addiction . We show enzymatic targeting of an NMDA-R antagonist , MK801 , to a molecularly defined neuronal population with the cell-type-selectivity of genetic methods and the... | Learning is critical to survival for humans and other animals . The learning process is regulated by receptors on the surface of brain cells called N-Methyl-D-aspartate receptors ( or NMDA receptors for short ) . These receptors help to strengthen signals between brain cells , which allows a new concept or action to be... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"short",
"report",
"biochemistry",
"and",
"chemical",
"biology",
"neuroscience"
] | 2015 | Cell type-specific pharmacology of NMDA receptors using masked MK801 |
Cardiac pumping depends on the morphological structure of the heart , but also on its subcellular ( ultrastructural ) architecture , which enables cardiac contraction . In cases of congenital heart defects , localized ultrastructural disruptions that increase the risk of heart failure are only starting to be discovered... | The heart is our hardest-working organ and beats around 100 , 000 times a day , pumping blood through a vast system of vessels to all areas of the body . Specialized heart cells make the heart contract rhythmically , enabling it to work efficiently . Contractile molecules inside these cells , called myofibrils , align ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology",
"tools",
"and",
"resources"
] | 2020 | Multiscale cardiac imaging spanning the whole heart and its internal cellular architecture in a small animal model |
We performed a genetic analysis of sRNA abundance in flag leaf from an immortalized F2 ( IMF2 ) population in rice . We identified 53 , 613 , 739 unique sRNAs and 165 , 797 sRNA expression traits ( s-traits ) . A total of 66 , 649 s-traits mapped 40 , 049 local-sQTLs and 30 , 809 distant-sQTLs . By defining 80 , 362 sR... | Genes within the DNA of a plant or animal contain instructions to make molecules called RNAs . Some RNA molecules can be decoded to make proteins , whereas others have different roles . A single gene often contains the instructions to make both protein-coding RNAs and non-coding RNAs . Molecules called small RNAs ( or ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"plant",
"biology",
"genetics",
"and",
"genomics"
] | 2015 | Genetic basis of sRNA quantitative variation analyzed using an experimental population derived from an elite rice hybrid |
Understanding the initiation and progression of pancreatic ductal adenocarcinoma ( PDAC ) may provide therapeutic strategies for this deadly disease . Recently , we and others made the surprising finding that PDAC and its preinvasive precursors , pancreatic intraepithelial neoplasia ( PanIN ) , arise via reprogramming ... | Pancreatic cancer is one of the most lethal forms of cancer , with fewer than 20% of people surviving for longer than twelve months after diagnosis . Two types of genetic mutation play important roles in pancreatic cancer . First , genes called oncogenes can be activated by mutations to drive unscheduled cell division ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology",
"cancer",
"biology"
] | 2015 | The acinar differentiation determinant PTF1A inhibits initiation of pancreatic ductal adenocarcinoma |
Possible options in a decision often organize as a hierarchy of subdecisions . A recent study concluded that perceptual processes in primates mimic this hierarchical structure and perform subdecisions in parallel . We argue that a flat model that directly selects between final choices accounts more parsimoniously for t... | Should you go for coffee with Jules , or go to the movie theater with Jim ? Both options require you to make additional decisions , for example , which café would you go to , or what movie could you see ? Many of our day-to-day decisions have multiple layers of sub-decisions embedded within them that are not necessaril... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Methods"
] | [
"short",
"report",
"neuroscience"
] | 2017 | Breaking down hierarchies of decision-making in primates |
‘Normal’ genomic DNA contains hundreds of mismatches that are generated daily by the spontaneous deamination of C ( U/G ) and methyl-C ( T/G ) . Thus , a mutagenic effect of their repair could constitute a serious genetic burden . We show here that while mismatches introduced into human cells on an SV40-based episome w... | The inherent chemical instability of the four bases that are found in DNA leads to our genetic material being damaged on a daily basis . The sequence of these bases codes the genetic instructions necessary for all cellular functions , so damaged bases must be efficiently recognized and accurately repaired . The base ex... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"chromosomes",
"and",
"gene",
"expression",
"biochemistry",
"and",
"chemical",
"biology"
] | 2014 | Repair of naturally occurring mismatches can induce mutations in flanking DNA |
Channelrhodopsin-2 ( ChR2 ) has quickly gained popularity as a powerful tool for eliciting genetically targeted neuronal activation . However , little has been reported on the response kinetics of optogenetic stimulation across different neuronal subtypes . With excess stimulation , neurons can be driven into depolariz... | The brain is a highly complex structure composed of trillions of interconnecting nerve cells . The pattern of connections between these cells gives rise to the various brain circuits that govern how the brain functions . Understanding how the brain is wired together is important for determining how ‘faulty circuits’ co... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2014 | Cell type-specific and time-dependent light exposure contribute to silencing in neurons expressing Channelrhodopsin-2 |
The mechanisms that maintain the functional heterogeneity of stem cells , which generates diverse differentiated cell types required for organogenesis , are not understood . In this study , we report that Trithorax ( Trx ) actively maintains the heterogeneity of neural stem cells ( neuroblasts ) in the developing Droso... | Whereas the majority of cells in the brain are unable to divide to produce new cells , neural stem cells can divide numerous times and have the potential to become many different types of brain cells . However , between these two extremes there is another group of cells called neural progenitors . These cells can give ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"stem",
"cells",
"and",
"regenerative",
"medicine"
] | 2014 | Trithorax maintains the functional heterogeneity of neural stem cells through the transcription factor Buttonhead |
Innovations in metazoan development arise from evolutionary modification of gene regulatory networks ( GRNs ) . We report widespread cryptic variation in the requirement for two key regulatory inputs , SKN-1/Nrf2 and MOM-2/Wnt , into the C . elegans endoderm GRN . While some natural isolates show a nearly absolute requ... | Two people with the same disease , or who inherit the same genetic mutation , often show different symptoms or respond to medical treatments in different ways . This is because many traits are not the result of a single gene , but of several genes interacting with each other in complex ways to form networks that lead t... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology",
"genetics",
"and",
"genomics"
] | 2019 | Extensive intraspecies cryptic variation in an ancient embryonic gene regulatory network |
In the retina , synaptic transmission between photoreceptors and downstream ON-bipolar neurons ( ON-BCs ) is mediated by a GPCR pathway , which plays an essential role in vision . However , the mechanisms that control signal transmission at this synapse and its relevance to behavior remain poorly understood . In this s... | At the back of the eye , a structure called the retina contains several types of cell that convert light into the electrical signals that the brain interprets to produce vision . Cells called rods and cones detect the light , and then signal to other neurons in the retina that relay this information to the brain . Rods... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2015 | Sensitivity and kinetics of signal transmission at the first visual synapse differentially impact visually-guided behavior |
Dendritic and axonal arbors of many neuronal types exhibit self-avoidance , in which branches repel each other . In some cases , these neurites interact with those of neighboring neurons , a phenomenon called self/non-self discrimination . The functional roles of these processes remain unknown . In this study , we used... | Nerve cells ( or neurons ) connect to one another to form circuits that control the animal's behavior . Typically , each neuron receives signals from other cells via branch-like structures called dendrites . Each specific type of neuron has a characteristic pattern of branched dendrites , which is different from the pa... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology",
"neuroscience"
] | 2015 | Protocadherin-dependent dendritic self-avoidance regulates neural connectivity and circuit function |
Transcription factors ( TFs ) operate by the combined activity of their DNA-binding domains ( DBDs ) and effector domains ( EDs ) enabling the coordination of gene expression on a genomic scale . Here we show that in vivo delivery of an engineered DNA-binding protein uncoupled from the repressor domain can produce effi... | Proteins called transcription factors bind to sections of DNA known as regulatory elements to activate or deactivate nearby genes . In animals , transcription factors typically have two sections: a “DNA-binding domain” that attaches to DNA , and an “effector domain” that is responsible for interacting with other protei... | [
"Abstract",
"Introduction",
"Materials",
"and",
"methods"
] | [
"short",
"report",
"neuroscience"
] | 2016 | Rhodopsin targeted transcriptional silencing by DNA-binding |
A longstanding question is how influenza virus evolves to escape human immunity , which is polyclonal and can target many distinct epitopes . Here , we map how all amino-acid mutations to influenza’s major surface protein affect viral neutralization by polyclonal human sera . The serum of some individuals is so focused... | The human immune system protects the body from repeat attacks by remembering past infections . However , a typical person comes down with the flu every five to seven years . This is because flu viruses rapidly evolve to bypass our defenses . So , after a few years , the viruses look so different that the immune system ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"evolutionary",
"biology",
"microbiology",
"and",
"infectious",
"disease"
] | 2019 | Mapping person-to-person variation in viral mutations that escape polyclonal serum targeting influenza hemagglutinin |
Infection and tissue damage induces assembly of supramolecular organizing centres ( SMOCs ) ) , such as the Toll-like receptor ( TLR ) MyDDosome , to co-ordinate inflammatory signaling . SMOC assembly is thought to drive digital all-or-none responses , yet TLR activation by diverse microbes induces anything from mild t... | Cells in the immune system have proteins at their surface that detect molecules produced by invading microbes . One of these proteins is Toll-like receptor 4 , TLR4 for short . Once TLR4 is activated , the immune cells form MyDDosomes – intricate complexes made of many different proteins . These structures form a signa... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"microbiology",
"and",
"infectious",
"disease",
"immunology",
"and",
"inflammation"
] | 2018 | Activation of Toll-like receptors nucleates assembly of the MyDDosome signaling hub |
The rodent olfactory bulb incorporates thousands of newly generated inhibitory neurons daily throughout adulthood , but the role of adult neurogenesis in olfactory processing is not fully understood . Here we adopted a genetic method to inducibly suppress adult neurogenesis and investigated its effect on behavior and b... | Most brain cells or neurons form early in life . Yet , in some parts of the brain , new neurons develop throughout adulthood , in a process called adult neurogenesis . These new neurons are incorporated into existing brain circuits and likely help the brain process information . In rodents , adult neurogenesis produces... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2018 | Adult-born neurons facilitate olfactory bulb pattern separation during task engagement |
The role of mechanical signals in cell identity determination remains poorly explored in tissues . Furthermore , because mechanical stress is widespread , mechanical signals are difficult to uncouple from biochemical-based transduction pathways . Here we focus on the homeobox gene SHOOT MERISTEMLESS ( STM ) , a master ... | The bending , stretching or squashing of cells or tissues can be used as a signal to trigger a range of biological responses . However investigating the role of these mechanical signals remains a challenge . This is partly because the forces that trigger the mechanical signals are often short-lived and changeable , and... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Material",
"and",
"methods"
] | [
"plant",
"biology",
"developmental",
"biology"
] | 2015 | Mechanical stress contributes to the expression of the STM homeobox gene in Arabidopsis shoot meristems |
Recent studies demonstrated that mutations in B3GNT1 , an enzyme proposed to be involved in poly-N-acetyllactosamine synthesis , were causal for congenital muscular dystrophy with hypoglycosylation of α-dystroglycan ( secondary dystroglycanopathies ) . Since defects in the O-mannosylation protein glycosylation pathway ... | Dystroglycan is a protein that is essential for muscles to function correctly , and helps to connect the interior framework of muscle cells with the external matrix of molecules that hold the cells together in the tissue . As is the case for many proteins , dystroglycan must have particular carbohydrate molecules joine... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology"
] | 2014 | B4GAT1 is the priming enzyme for the LARGE-dependent functional glycosylation of α-dystroglycan |
Cardiac progenitor cells ( CPCs ) must control their number and fate to sustain the rapid heart growth during development , yet the intrinsic factors and environment governing these processes remain unclear . Here , we show that deletion of the ancient cell-fate regulator Numb ( Nb ) and its homologue Numblike ( Nbl ) ... | Human embryos contain cells called ‘cardiac progenitor cells’ that serve as the building blocks to make the heart . Cardiac progenitor cells , or CPCs for short , initially move into areas of the embryo called the first and second heart fields , and then undergo a change to become specific types of heart cells: such as... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology"
] | 2014 | Precardiac deletion of Numb and Numblike reveals renewal of cardiac progenitors |
The Drosophila genome contains >13000 protein-coding genes , the majority of which remain poorly investigated . Important reasons include the lack of antibodies or reporter constructs to visualise these proteins . Here , we present a genome-wide fosmid library of 10000 GFP-tagged clones , comprising tagged genes and mo... | The fruit fly Drosophila melanogaster is a popular model organism in biological research . Studies using Drosophila have led to important insights into human biology , because related proteins often fulfil similar roles in flies and humans . Thus , studying the role of a protein in Drosophila can teach us about what it... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology",
"tools",
"and",
"resources",
"genetics",
"and",
"genomics"
] | 2016 | A genome-wide resource for the analysis of protein localisation in Drosophila |
Human speech is one of the few examples of vocal learning among mammals yet ~half of avian species exhibit this ability . Its neurogenetic basis is largely unknown beyond a shared requirement for FoxP2 in both humans and zebra finches . We manipulated FoxP2 isoforms in Area X , a song-specific region of the avian stria... | Songbirds , much like in humans , have a critical period in youth when they are best at learning vocal communication skills . In birds , this is when they learn a song they will use later in life as a courtship song . In humans , this is when language skills are most easily learned . After this critical period ends , i... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"computational",
"and",
"systems",
"biology",
"neuroscience"
] | 2018 | FoxP2 isoforms delineate spatiotemporal transcriptional networks for vocal learning in the zebra finch |
Protective signaling from the leukemia microenvironment leads to leukemia cell persistence , development of resistance , and disease relapse . Here , we demonstrate that fibroblast growth factor 2 ( FGF2 ) from bone marrow stromal cells is secreted in exosomes , which are subsequently endocytosed by leukemia cells , an... | Leukemias are cancers of white blood cells . The cells grow and divide rapidly , often because of mutations in proteins called kinases . Since the kinase mutations do not occur in healthy cells , they provide a good target for anti-leukemia drugs . Several such kinase inhibitors are effective at treating leukemia patie... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"research",
"communication",
"cancer",
"biology"
] | 2019 | FGF2-FGFR1 signaling regulates release of Leukemia-Protective exosomes from bone marrow stromal cells |
To build the spindle at mitosis , motors exert spatially regulated forces on microtubules . We know that dynein pulls on mammalian spindle microtubule minus-ends , and this localized activity at ends is predicted to allow dynein to cluster microtubules into poles . How dynein becomes enriched at minus-ends is not known... | Every time a cell divides , it needs to duplicate its DNA and evenly distribute it between the two new ‘daughter’ cells . To move and distribute DNA , the cell builds a large machine called a spindle , which is made of stiff cables called microtubules . Many proteins , including a motor called dynein , help to organize... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology"
] | 2017 | NuMA recruits dynein activity to microtubule minus-ends at mitosis |
Although molecular recognition is crucial for cellular signaling , mechanistic studies have relied primarily on ensemble measures that average over and thereby obscure underlying steps . Single-molecule observations that resolve these steps are lacking due to diffraction-limited resolution of single fluorophores at rel... | Certain cells in the heart and brain show rhythmic bursts of electrical activity . Such electrical activity is a caused by ions moving in or out of the cells though a number of ion channel proteins in the cell surface membrane . The voltage across this cell membrane regulates the activity of these so-called pacemaking ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods",
"Accession",
"numbers"
] | [
"structural",
"biology",
"and",
"molecular",
"biophysics"
] | 2016 | Structure and dynamics underlying elementary ligand binding events in human pacemaking channels |
The Ca2+-sensor synaptotagmin-1 that triggers neuronal exocytosis binds to negatively charged membrane lipids ( mainly phosphatidylserine ( PtdSer ) and phosphoinositides ( PtdIns ) ) but the molecular details of this process are not fully understood . Using quantitative thermodynamic , kinetic and structural methods ,... | The human nervous system contains billions of neurons that communicate with each other across junctions called synapses . When a neuron is activated , the levels of calcium ions inside the cell rise . This causes molecules called neurotransmitters to be released from the neuron at a synapse to make contact with the sec... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"structural",
"biology",
"and",
"molecular",
"biophysics",
"neuroscience"
] | 2016 | PtdInsP2 and PtdSer cooperate to trap synaptotagmin-1 to the plasma membrane in the presence of calcium |
Red blood cells ( RBC ) must coordinate their rate of growth and proliferation with the availability of nutrients , such as iron , but the signaling mechanisms that link the nutritional state to RBC growth are incompletely understood . We performed a screen for cell types that have high levels of signaling through mTOR... | To multiply and grow , cells need to create more of the molecules—such as proteins—that make up their structure . This only happens if the cell has a good supply of the nutrients used to build the proteins . Red blood cells are particularly sensitive to the supply of nutrients , especially iron , which is a key compone... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology"
] | 2014 | A critical role for mTORC1 in erythropoiesis and anemia |
During land plant evolution , determinate spore-bearing axes ( retained in extant bryophytes such as mosses ) were progressively transformed into indeterminate branching shoots with specialized reproductive axes that form flowers . The LEAFY transcription factor , which is required for the first zygotic cell division i... | The first plants colonized land around 500 million years ago . These plants had simple shoots with no branches , similar to the mosses that live today . Later on , some plants evolved more complex structures including branched shoots and flowers ( collectively known as the “flowering plants” ) . Ferns are a group of pl... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"plant",
"biology"
] | 2018 | LEAFY maintains apical stem cell activity during shoot development in the fern Ceratopteris richardii |
Longevity mechanisms increase lifespan by counteracting the effects of aging . However , whether longevity mechanisms counteract the effects of aging continually throughout life , or whether they act during specific periods of life , preventing changes that precede mortality is unclear . Here , we uncover transcription... | All organisms age , leading to gradual declines in the body’s systems and eventually death . How certain genetic mutations and drugs delay the effects of aging and promote survival to an older age is a question many researchers are exploring . One way this problem is investigated is by looking at how the activity – or ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"computational",
"and",
"systems",
"biology",
"neuroscience"
] | 2015 | Suppression of transcriptional drift extends C. elegans lifespan by postponing the onset of mortality |
Distinct anatomical and spectral channels are thought to play specialized roles in the communication within cortical networks . While activity in the alpha and beta frequency range ( 7 – 40 Hz ) is thought to predominantly originate from infragranular cortical layers conveying feedback-related information , activity in... | As we interact with the world around us , signals flow from neuron to neuron and from one brain area to the next . When we look at an object , for example , signals pass along a pathway of areas in the outermost part of the brain , called the cortex . Each area along this visual pathway performs more complex processing... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2018 | Lamina-specific cortical dynamics in human visual and sensorimotor cortices |
Master regulatory genes of tissue specification play key roles in stem/progenitor cells and are often important in cancer . In the prostate , androgen receptor ( AR ) is a master regulator essential for development and tumorigenesis , but its specific functions in prostate stem/progenitor cells have not been elucidated... | Most prostate tumors rely on male hormones – called androgens – to survive . Aggressive prostate cancer is often treated with drugs that block androgens , which usually cause the prostate tumors to shrink . One class of the drugs works by binding to and inactivating the androgen receptor protein on prostate cancer cell... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"stem",
"cells",
"and",
"regenerative",
"medicine",
"cancer",
"biology"
] | 2018 | Differential requirements of androgen receptor in luminal progenitors during prostate regeneration and tumor initiation |
Lysosomes are classically viewed as vesicular structures to which cargos are delivered for degradation . Here , we identify a network of dynamic , tubular lysosomes that extends throughout Drosophila muscle , in vivo . Live imaging reveals that autophagosomes merge with tubular lysosomes and that lysosomal membranes un... | Mutations in a gene that produces a protein called Valosin-containing protein ( VCP for short ) causes degenerative diseases that affect the brain , muscle and bone . In nearly half of the individuals with these VCP-related diseases—which can also result in dementia , Paget's disease of the bone and amyotrophic lateral... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology",
"neuroscience"
] | 2015 | VCP-dependent muscle degeneration is linked to defects in a dynamic tubular lysosomal network in vivo |
Bicoid ( Bcd ) protein distributes in a concentration gradient that organizes the anterior/posterior axis of the Drosophila embryo . It has been understood that bcd RNA is sequestered at the anterior pole during oogenesis , is not translated until fertilization , and produces a protein gradient that functions in the sy... | As an embryo develops , a single cell transforms into a collection of different types of cells . One protein that is crucial for this process in fruit fly embryos is Bicoid . Thirty years ago , scientists discovered that Bicoid protein is concentrated at the head end of the embryo and gradually decreases in amount towa... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology"
] | 2016 | Bicoid gradient formation and function in the Drosophila pre-syncytial blastoderm |
Myogenesis is an evolutionarily conserved process . Little known , however , is how the morphology of each muscle is determined , such that movements relying upon contraction of many muscles are both precise and coordinated . Each Drosophila larval muscle is a single multinucleated fibre whose morphology reflects expre... | Each muscle in the body has a unique size , shape and set of attachment points . Animals need all of their muscles to have the correct identity to help maintain posture and control movement . A specific set of proteins , called transcription factors , co-ordinate and regulate gene activity in cells so that each muscle ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology"
] | 2020 | Intrinsic control of muscle attachment sites matching |
In complex biological systems , simple individual-level behavioral rules can give rise to emergent group-level behavior . While collective behavior has been well studied in cells and larger organisms , the mesoscopic scale is less understood , as it is unclear which sensory inputs and physical processes matter a priori... | Anyone who has watched a flock of birds maneuver through the sky has probably wondered how so many animals coordinate their movements . Often , these seemingly complex group behaviors can be explained by a few simple rules that govern the behavior of the individuals in the group . For example , if each bird flies and r... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"physics",
"of",
"living",
"systems"
] | 2019 | Shared behavioral mechanisms underlie C. elegans aggregation and swarming |
The quality of visual information that is available to an animal is limited by the size of its eyes . Differences in eye size can be observed even between closely related individuals , yet we understand little about how this affects vision . Insects are good models for exploring the effects of size on visual systems be... | Bees fly through complex environments in search of nectar from flowers . They are aided in this quest by excellent eyesight . Scientists have extensively studied the eyesight of honeybees to learn more about how such tiny eyes work and how they process and learn visual information . Less is known about the honeybee’s l... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"computational",
"and",
"systems",
"biology",
"neuroscience"
] | 2019 | Bumblebee visual allometry results in locally improved resolution and globally improved sensitivity |
Brain development relies on an interplay between genetic specification and self-organization . Striking examples of this relationship can be found in the somatosensory brainstem , thalamus , and cortex of rats and mice , where the arrangement of the facial whiskers is preserved in the arrangement of cell aggregates to ... | How does the brain wire itself up ? One possibility is that a precise genetic blueprint tells every brain cell explicitly how it should be connected to other cells . Another option is that complex patterns emerge from relatively simple interactions between growing cells , which are more loosely controlled by genetic in... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Methods"
] | [
"developmental",
"biology",
"short",
"report",
"computational",
"and",
"systems",
"biology"
] | 2020 | Modelling the emergence of whisker barrels |
The majority of mitochondrial proteins are targeted to mitochondria by N-terminal presequences and use the TIM23 complex for their translocation across the mitochondrial inner membrane . During import , translocation through the channel in the inner membrane is coupled to the ATP-dependent action of an Hsp70-based impo... | Human , yeast and other eukaryotic cells contain compartments called mitochondria . These compartments are surrounded by two membranes and are most famous for their essential role in supplying the cell with energy . While mitochondria can make a few of their own proteins , the vast majority of mitochondrial proteins ar... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Material",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology",
"cell",
"biology"
] | 2015 | Protein translocation channel of mitochondrial inner membrane and matrix-exposed import motor communicate via two-domain coupling protein |
Automated detection of complex animal behaviors remains a challenging problem in neuroscience , particularly for behaviors that consist of disparate sequential motions . Grooming is a prototypical stereotyped behavior that is often used as an endophenotype in psychiatric genetics . Here , we used mouse grooming behavio... | Behavior is one of the ultimate and most complex outputs of the body’s central nervous system , which controls movement , emotion and mood . It is also influenced by a person’s genetics . Scientists studying the link between behavior and genetics often conduct experiments using animals , whose actions can be more easil... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"computational",
"and",
"systems",
"biology",
"neuroscience"
] | 2021 | Action detection using a neural network elucidates the genetics of mouse grooming behavior |
RasGRPs are guanine nucleotide exchange factors that are specific for Ras or Rap , and are important regulators of cellular signaling . Aberrant expression or mutation of RasGRPs results in disease . An analysis of RasGRP1 SNP variants led to the conclusion that the charge of His 212 in RasGRP1 alters signaling activit... | Complex chain reactions between many kinds of molecules regulate every process in the body . For example , the signaling molecule Ras helps the cell to grow and divide . However , abnormally high levels of Ras signals can cause cancer . Ras is activated by proteins called exchange factors . One of the families of Ras e... | [
"Abstract",
"Introduction",
"Results",
"and",
"discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology",
"structural",
"biology",
"and",
"molecular",
"biophysics"
] | 2017 | A Histidine pH sensor regulates activation of the Ras-specific guanine nucleotide exchange factor RasGRP1 |
PrPC , the cellular isoform of the prion protein , serves to transduce the neurotoxic effects of PrPSc , the infectious isoform , but how this occurs is mysterious . Here , using a combination of electrophysiological , cellular , and biophysical techniques , we show that the flexible , N-terminal domain of PrPC functio... | Prion diseases are a group of degenerative illnesses of the brain caused when a molecule called the prion protein ( PrP for short ) adopts the wrong shape . These diseases include the human form of mad cow disease , and are often fatal with no effective treatments or cures . Though the normal activity of PrP is not cer... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2017 | The N-terminus of the prion protein is a toxic effector regulated by the C-terminus |
Understanding how option values are compared when making a choice is a key objective for decision neuroscience . In natural situations , agents may have a priori on their preferences that create default policies and shape the neural comparison process . We asked participants to make choices between items belonging to d... | If you had the choice of listening to a piece of music by either the singer Céline Dion or jazz pianist Keith Jarrett , which would you pick ? When choosing between two mutually exclusive options , the brain first assigns a value to each . An area called the ventromedial prefrontal cortex ( vmPFC ) compares these two v... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2016 | How prior preferences determine decision-making frames and biases in the human brain |
Human bromodomain and extra-terminal domain ( BET ) family members are promising targets for therapy of cancer and immunoinflammatory diseases , but their mechanisms of action and functional redundancies are poorly understood . Bdf1/2 , yeast homologues of the human BET factors , were previously proposed to target tran... | When a healthy cell creates new proteins , it activates a standard two-step biological manufacturing process . Firstly , DNA is transcribed from a specific gene to generate a strand of messenger RNA , or mRNA . Next , this mRNA molecule is translated to create the final protein product . This process of converting DNA ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"chromosomes",
"and",
"gene",
"expression",
"genetics",
"and",
"genomics"
] | 2021 | BET family members Bdf1/2 modulate global transcription initiation and elongation in Saccharomyces cerevisiae |
Here , we describe a novel method based on intronic MiMIC insertions described in Nagarkar-Jaiswal et al . ( 2015 ) to perform conditional gene inactivation in Drosophila . Mosaic analysis in Drosophila cannot be easily performed in post-mitotic cells . We therefore , therefore , developed Flip-Flop , a flippase-depend... | The instructions needed to build and maintain cells in an organism are encoded in their DNA . There are many different cell types , and each type only needs a small portion of the information found in the DNA to do its job . Hence , only some of the instructions , in the form of genes , need to be active or ‘expressed’... | [
"Abstract",
"Introduction",
"Results",
"and",
"discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology",
"tools",
"and",
"resources",
"neuroscience"
] | 2017 | A cell cycle-independent, conditional gene inactivation strategy for differentially tagging wild-type and mutant cells |
Meristems contain groups of indeterminate stem cells , which are maintained by a feedback loop between CLAVATA ( CLV ) and WUSCHEL ( WUS ) signaling . CLV signaling involves the secretion of the CLV3 peptide and its perception by a number of Leucine-Rich-Repeat ( LRR ) receptors , including the receptor-like kinase CLV... | Like animals , plants are made up of many different types of cells , which descend from undifferentiated cells called stem cells . Thanks to these cells , plants are able to grow and develop throughout their lives . Stem cells live at the tips of the plant’s shoots and roots . They constantly divide to produce new cell... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"plant",
"biology"
] | 2018 | The CLAVATA receptor FASCIATED EAR2 responds to distinct CLE peptides by signaling through two downstream effectors |
Although seasonality is widespread and can cause fluctuations in the intensity and direction of natural selection , we have little information about the consequences of seasonal fitness trade-offs for population dynamics . Here we exposed populations of Drosophila melanogaster to repeated seasonal changes in resources ... | Many wild populations go through long cycles in abundance that span several generations . The traditional explanation for such “multigenerational” cycles is that they are driven by predator/prey relationships , the classic example being oscillations between the numbers of lynx and snowshoe hares . Population cycles cou... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"ecology"
] | 2017 | A fitness trade-off between seasons causes multigenerational cycles in phenotype and population size |
Animals and humans have a tendency to repeat recent choices , a phenomenon known as choice hysteresis . The mechanism for this choice bias remains unclear . Using an established , biophysically informed model of a competitive attractor network for decision making , we found that decaying tail activity from the previous... | When making decisions , people and other animals tend to repeat previous choices even if this is no longer the best course of action . This tendency is especially common when the choice is difficult to make . For example , when people are asked to decide whether groups of dots on a television screen are moving mostly t... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2016 | Response repetition biases in human perceptual decisions are explained by activity decay in competitive attractor models |
Potassium channels are opened by ligands and/or membrane potential . In voltage-gated K+ channels and the prokaryotic KcsA channel , conduction is believed to result from opening of an intracellular constriction that prevents ion entry into the pore . On the other hand , numerous ligand-gated K+ channels lack such gate... | Potassium channels are proteins found in almost all living organisms and are vital for many different biological processes . These proteins contain a pore that allows potassium ions to flow through cell membranes , but only when the channel is open . Most channels have a narrowing at the inward side of the pore , which... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"structural",
"biology",
"and",
"molecular",
"biophysics"
] | 2017 | Mechanism of activation at the selectivity filter of the KcsA K+ channel |
A central goal of studying host-pathogen interaction is to understand how host and pathogen manipulate each other to promote their own fitness in a pathosystem . Co-transcriptomic approaches can simultaneously analyze dual transcriptomes during infection and provide a systematic map of the cross-kingdom communication b... | Infections are complex interactions between two organisms . When a disease-causing microbe and a potential host engage , molecules continuously flow in both directions . This creates an inter-connected loop of messages and counter-messages , attacks , counter-attacks and resistance . This communication determines the f... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"plant",
"biology"
] | 2019 | Plant–necrotroph co-transcriptome networks illuminate a metabolic battlefield |
Toothed whales use sonar to detect , locate , and track prey . They adjust emitted sound intensity , auditory sensitivity and click rate to target range , and terminate prey pursuits with high-repetition-rate , low-intensity buzzes . However , their narrow acoustic field of view ( FOV ) is considered stable throughout ... | Bats and toothed whales such as porpoises have independently evolved the same solution for hunting prey when it is hard to see . Bats hunt in the dark with little light to allow them to see the insects they chase . Porpoises hunt in murky water where different ocean environments can quickly obscure fish from view . So ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"ecology",
"neuroscience"
] | 2015 | Range-dependent flexibility in the acoustic field of view of echolocating porpoises (Phocoena phocoena) |
Genomic instability is a fundamental feature of human cancer often resulting from impaired genome maintenance . In prostate cancer , structural genomic rearrangements are a common mechanism driving tumorigenesis . However , somatic alterations predisposing to chromosomal rearrangements in prostate cancer remain largely... | Prostate cancer is the most common type of cancer in men in the UK and USA . Cancers develop when cells in the body acquire genetic mutations that allow the cells to grow rapidly and form a mass known as a tumor . Prostate cancer cells from different individuals can carry different genetic mutations , which affects whe... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology",
"cancer",
"biology"
] | 2015 | SPOP mutation leads to genomic instability in prostate cancer |
Metazoan genes are embedded in a rich milieu of regulatory information that often includes multiple enhancers possessing overlapping activities . In this study , we employ quantitative live imaging methods to assess the function of pairs of primary and shadow enhancers in the regulation of key patterning genes-knirps ,... | Only a subset of the genes in a cell is active at any time . Gene activation or ‘transcription’ is controlled by specific DNA sequences called promoters and enhancers . Promoters are found next to genes and recruit the protein machinery needed to transcribe the gene . Enhancers are located further away from genes and i... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology"
] | 2015 | Enhancer additivity and non-additivity are determined by enhancer strength in the Drosophila embryo |
Excitation-inhibition ( E:I ) imbalance is theorized as an important pathophysiological mechanism in autism . Autism affects males more frequently than females and sex-related mechanisms ( e . g . , X-linked genes , androgen hormones ) can influence E:I balance . This suggests that E:I imbalance may affect autism diffe... | Autism is a condition that is usually diagnosed early in life that affects how a person communicates and socializes , and is often characterized by repetitive behaviors . One key theory of autism is that it reflects an imbalance in levels of excitation and inhibition in the brain . Excitatory signals are those that mak... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"medicine",
"neuroscience"
] | 2020 | Intrinsic excitation-inhibition imbalance affects medial prefrontal cortex differently in autistic men versus women |
Information is carried in the brain by the joint spiking patterns of large groups of noisy , unreliable neurons . This noise limits the capacity of the neural code and determines how information can be transmitted and read-out . To accurately decode , the brain must overcome this noise and identify which patterns are s... | Our ability to perceive the world is dependent on information from our senses being passed between different parts of the brain . The information is encoded as patterns of electrical pulses or ‘spikes’ , which other brain regions must be able to decipher . Cracking this code would thus enable us to predict the patterns... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2015 | A thesaurus for a neural population code |
Sensory inputs are remarkably organized along all sensory pathways . While sensory representations are known to undergo plasticity at the higher levels of sensory pathways following peripheral lesions or sensory experience , less is known about the functional plasticity of peripheral inputs induced by learning . We add... | The mammalian brain is not static , but instead retains a significant degree of plasticity throughout an animal’s life . It is this plasticity that enables adults to learn new things , adjust to new environments and , to some degree , regain functions they have lost as a result of brain damage . However , information a... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2014 | Long term functional plasticity of sensory inputs mediated by olfactory learning |
Contamination with exogenous DNA is a constant hazard to ancient DNA studies , since their validity greatly depend on the ancient origin of the retrieved sequences . Since contamination occurs sporadically , it is fundamental to show positive evidence for the authenticity of ancient DNA sequences even when preventive m... | Ancient DNA , that is to say DNA extracted from fossils and ancient remains , provides a window into the past lives of humans , animals and plants . But working with ancient DNA is challenging; DNA decomposes with time , and so ancient DNA is often fragmented , damaged and present in tiny quantities . Furthermore , anc... | [
"Abstract",
"Introduction",
"Results",
"and",
"discussion",
"Materials",
"and",
"methods"
] | [
"plant",
"biology",
"short",
"report",
"genetics",
"and",
"genomics"
] | 2015 | Contesting the presence of wheat in the British Isles 8,000 years ago by assessing ancient DNA authenticity from low-coverage data |
Interactions between membrane protein interfaces in lipid bilayers play an important role in membrane protein folding but quantification of the strength of these interactions has been challenging . Studying dimerization of ClC-type transporters offers a new approach to the problem , as individual subunits adopt a stabl... | Cells are encapsulated by membranes that form a barrier between the inside of the cell and the outside world . These membranes primarily consist of fatty molecules called lipids , but they are also packed with proteins such as ion channels and transporters that control which molecules pass in and out of the cell . It i... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology",
"structural",
"biology",
"and",
"molecular",
"biophysics"
] | 2016 | The dimerization equilibrium of a ClC Cl−/H+ antiporter in lipid bilayers |
Using a new bioinformatic method to analyze ribosome profiling data , we show that 40% of lncRNAs and pseudogene RNAs expressed in human cells are translated . In addition , ~35% of mRNA coding genes are translated upstream of the primary protein-coding region ( uORFs ) and 4% are translated downstream ( dORFs ) . Tran... | Our genes encode the instructions needed to make proteins . When a gene is switched on , it’s DNA is used as a template to make molecules of messenger ribonucleic acid ( RNA ) . These RNAs are then “translated” into proteins by large cell machines called ribosomes . Within the messenger RNA , a long region called an “o... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"chromosomes",
"and",
"gene",
"expression",
"cell",
"biology"
] | 2015 | Many lncRNAs, 5’UTRs, and pseudogenes are translated and some are likely to express functional proteins |
We identified the neurons comprising the Drosophila mushroom body ( MB ) , an associative center in invertebrate brains , and provide a comprehensive map describing their potential connections . Each of the 21 MB output neuron ( MBON ) types elaborates segregated dendritic arbors along the parallel axons of ∼2000 Kenyo... | One of the key goals of neuroscience is to understand how specific circuits of brain cells enable animals to respond optimally to the constantly changing world around them . Such processes are more easily studied in simpler brains , and the fruit fly—with its small size , short life cycle , and well-developed genetic t... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2014 | The neuronal architecture of the mushroom body provides a logic for associative learning |
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