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Synthesis of mRNA in eukaryotes involves the coordinated action of many enzymatic processes , including initiation , elongation , splicing , and cleavage . Kinetic competition between these processes has been proposed to determine RNA fate , yet such coupling has never been observed in vivo on single transcripts . In t... | To make a protein , part of a DNA sequence is copied to make a messenger RNA ( or mRNA ) molecule in a process known as transcription . The enzyme that builds an mRNA molecule first binds to a start point on a DNA strand , and then uses the DNA sequence to build a ‘pre-mRNA’ molecule until a stop signal is reached . To... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"chromosomes",
"and",
"gene",
"expression"
] | 2014 | Kinetic competition during the transcription cycle results in stochastic RNA processing |
Escherichia coli DNA polymerase V ( pol V ) , a heterotrimeric complex composed of UmuD′2C , is marginally active . ATP and RecA play essential roles in the activation of pol V for DNA synthesis including translesion synthesis ( TLS ) . We have established three features of the roles of ATP and RecA . ( 1 ) RecA-activa... | DNA polymerases are enzymes that copy the genetic material within a cell using a strand of an existing double helix as a template to guide the synthesis of a new DNA strand . Since DNA is continuously exposed to damaging agents , and damaged DNA can derail the DNA replication machinery; a cell must either repair or byp... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology"
] | 2014 | DNA polymerase V activity is autoregulated by a novel intrinsic DNA-dependent ATPase |
Queens of social insects make all mate-choice decisions on a single day , except in honeybees whose queens can conduct mating flights for several days even when already inseminated by a number of drones . Honeybees therefore appear to have a unique , evolutionarily derived form of sexual conflict: a queen’s decision to... | For social insects like honeybees it is beneficial if their queens mate with many males , because genetic diversity can protect the hive against parasites . Early in life , a honeybee queen has a short period of time in which she can fly out to mate with males before returning to the hive with all the sperm needed to l... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"ecology",
"evolutionary",
"biology"
] | 2019 | Seminal fluid compromises visual perception in honeybee queens reducing their survival during additional mating flights |
Brain injuries can interrupt descending neural pathways that convey motor commands from the cortex to spinal motoneurons . Here , we demonstrate that a unilateral injury of the hindlimb sensorimotor cortex of rats with completely transected thoracic spinal cord produces hindlimb postural asymmetry with contralateral fl... | Brain trauma or a stroke often lead to severe problems in posture and movement . These injuries frequently occur only on one side , causing asymmetrical motor changes: damage to the left brain hemisphere triggers abnormal contractions of the right limbs , and vice-versa . The injuries can disrupt neural tracts between ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2021 | Left-right side-specific endocrine signaling complements neural pathways to mediate acute asymmetric effects of brain injury |
The nuclear pore complex ( NPC ) mediates nucleocytoplasmic transport through the nuclear envelope . How the NPC assembles into this double membrane boundary has remained enigmatic . Here , we captured temporally staged assembly intermediates by correlating live cell imaging with high-resolution electron tomography and... | The nucleus is the compartment within our cells that contains most of our genetic material . It is separated from the rest of the cell by a boundary called the nuclear envelope , which consists of two layers of membrane . All transport in and out of the nucleus has to pass through channels in the envelope , formed by l... | [
"Abstract",
"Introduction",
"Results",
"and",
"discussion",
"Materials",
"and",
"methods"
] | [] | 2016 | Nuclear pore assembly proceeds by an inside-out extrusion of the nuclear envelope |
Bacterial swarming and biofilm formation are collective multicellular phenomena through which diverse microbial species colonize and spread over water-permeable tissue . During both modes of surface translocation , fluid uptake and transport play a key role in shaping the overall morphology and spreading dynamics . Her... | Bacteria can grow and thrive in many different environments . Although we usually think of bacteria as single-celled organisms , they are not always solitary; they can also form groups containing large numbers of individuals . These aggregates work together as one super-colony , allowing the bacteria to feed and protec... | [
"Abstract",
"Introduction",
"Experimental",
"background",
"Theoretical",
"framework",
"Bacterial",
"swarms",
"Bacterial",
"films",
"Discussion"
] | [
"physics",
"of",
"living",
"systems"
] | 2019 | A multiphase theory for spreading microbial swarms and films |
Protein arginine methyltransferase 5 ( Prmt5 ) is the major type II enzyme responsible for symmetric dimethylation of arginine . Here , we found that PRMT5 was expressed at high level in ovarian granulosa cells of growing follicles . Inactivation of Prmt5 in granulosa cells resulted in aberrant follicle development and... | Infertility in women can be caused by many factors , such as defects in the ovaries . An important part of the ovaries for fertility are internal structures called follicles , which house early forms of egg cells . A follicle grows and develops until the egg is finally released from the ovary into the fallopian tube , ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology",
"cell",
"biology"
] | 2021 | PRMT5 regulates ovarian follicle development by facilitating Wt1 translation |
IgE can trigger potent allergic responses , yet the mechanisms regulating IgE production are poorly understood . Here we reveal that IgE+ B cells are constrained by chronic activity of the IgE B cell receptor ( BCR ) . In the absence of cognate antigen , the IgE BCR promoted terminal differentiation of B cells into pla... | Antibodies are proteins that recognize and bind to specific molecules , and so help the immune system to defend the body against foreign substances that are potentially harmful . In some cases , harmless substances – such as pollen , dust or food – can trigger this response and lead to an allergic reaction . A type of ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology",
"immunology",
"and",
"inflammation"
] | 2016 | Regulation of B cell fate by chronic activity of the IgE B cell receptor |
Advances in fluorescence microscopy enable monitoring larger brain areas in-vivo with finer time resolution . The resulting data rates require reproducible analysis pipelines that are reliable , fully automated , and scalable to datasets generated over the course of months . We present CaImAn , an open-source library f... | The human brain contains billions of cells called neurons that rapidly carry information from one part of the brain to another . Progress in medical research and healthcare is hindered by the difficulty in understanding precisely which neurons are active at any given time . New brain imaging techniques and genetic tool... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"tools",
"and",
"resources",
"neuroscience"
] | 2019 | CaImAn an open source tool for scalable calcium imaging data analysis |
The precise regulation of microtubule dynamics is essential during cell division . The kinesin-13 motor protein MCAK is a potent microtubule depolymerase . The divergent non-motor regions flanking the ATPase domain are critical in regulating its targeting and activity . However , the molecular basis for the function of... | Within a cell , there is a scaffold-like structure called the cytoskeleton that provides shape and structural support , and acts as a transport network for the movement of molecules around the cell . This scaffold contains highly dynamic polymers called microtubules that are made from a protein called tubulin . The con... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology",
"structural",
"biology",
"and",
"molecular",
"biophysics"
] | 2015 | The C-terminal region of the motor protein MCAK controls its structure and activity through a conformational switch |
Little is known about the excess mortality caused by multidrug-resistant ( MDR ) bacterial infection in low- and middle-income countries ( LMICs ) . We retrospectively obtained microbiology laboratory and hospital databases of nine public hospitals in northeast Thailand from 2004 to 2010 , and linked these with the nat... | Antimicrobial resistance is a global problem . Each year , an estimated 23 , 000 deaths in the United States and 25 , 000 deaths in the European Union are extra deaths caused by bacteria resistant to antibiotics . People in low- and middle-income countries are also using more antibiotics , in part because of rising inc... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"epidemiology",
"and",
"global",
"health"
] | 2016 | Epidemiology and burden of multidrug-resistant bacterial infection in a developing country |
A general method is described for the site-specific genetic encoding of cyanine dyes as non-canonical amino acids ( Cy-ncAAs ) into proteins . The approach relies on an improved technique for nonsense suppression with in vitro misacylated orthogonal tRNA . The data show that Cy-ncAAs ( based on Cy3 and Cy5 ) are tolera... | Many scientists would argue that the leading edge of biological exploration is playing out at the level of individual molecules . On this scale , the essential molecular players of life are so small that they simply cannot be seen with a normal light microscope . While technology that can capture static snapshots of in... | [
"Abstract",
"Introduction",
"Results",
"and",
"discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology",
"structural",
"biology",
"and",
"molecular",
"biophysics",
"tools",
"and",
"resources"
] | 2016 | Cellular encoding of Cy dyes for single-molecule imaging |
The ability to read a page of text or recognize a person's face depends on category-selective visual regions in ventral temporal cortex ( VTC ) . To understand how these regions mediate word and face recognition , it is necessary to characterize how stimuli are represented and how this representation is used in the exe... | As your eyes scan this page , your visual system performs a series of computations that allow you to derive meaning from the printed words . The visual system solves this task with such apparent ease that you may never have thought about the challenges that your brain must overcome for you to read a page of text . The ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"computational",
"and",
"systems",
"biology",
"neuroscience"
] | 2017 | Bottom-up and top-down computations in word- and face-selective cortex |
Many reef-building corals participate in a mass-spawning event that occurs yearly on the Great Barrier Reef . This coral reproductive event is one of earth's most prominent examples of synchronised behavior , and coral reproductive success is vital to the persistence of coral reef ecosystems . Although several environm... | Sexual reproduction in corals is possibly the most important process for replenishing degraded coral reefs . Most corals are “broadcast spawners” that reproduce by releasing their egg cells and sperm cells into the sea water surface . To maximize their chances of reproductive success , most coral in the Great Barrier R... | [
"Abstract",
"Introduction",
"Results",
"and",
"discussion",
"Materials",
"and",
"methods"
] | [
"ecology",
"short",
"report"
] | 2015 | Signaling cascades and the importance of moonlight in coral broadcast mass spawning |
Serotonin ( 5-HT ) is associated with mood and motivation but the function of endogenous 5-HT remains controversial . Here , we studied the impact of phasic optogenetic activation of 5-HT neurons in mice over time scales from seconds to weeks . We found that activating dorsal raphe nucleus ( DRN ) 5-HT neurons induced ... | The brain controls sleep , movement and the other behaviors that an animal needs to survive . A chemical called serotonin plays an important role in controlling these behaviors as it regulates the activity of nerve cells ( known as neurons ) throughout the brain . Serotonin is produced by a specific group of neurons fo... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2017 | Transient inhibition and long-term facilitation of locomotion by phasic optogenetic activation of serotonin neurons |
Tumor-initiating stem cells ( SCs ) exhibit distinct patterns of transcription factors and gene expression compared to healthy counterparts . Here , we show that dramatic shifts in large open-chromatin domain ( super-enhancer ) landscapes underlie these differences and reflect tumor microenvironment . By in vivo super-... | Many cancers contain a mixture of different types of cells . Of these , cells known as cancer stem cells can form new tumours and drive the growth and spread of the cancer around the body . A central question is how cancer stem cells differ from healthy adult stem cells . Recent evidence suggests that , in addition to ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"stem",
"cells",
"and",
"regenerative",
"medicine"
] | 2015 | ETS family transcriptional regulators drive chromatin dynamics and malignancy in squamous cell carcinomas |
Multifunctional proteins are evolutionary puzzles: how do proteins evolve to satisfy multiple functional constraints ? S100A9 is one such multifunctional protein . It potently amplifies inflammation via Toll-like receptor four and is antimicrobial as part of a heterocomplex with S100A8 . These two functions are seeming... | A single protein sometimes does multiple jobs . For instance , our immune system uses a small number of multipurpose proteins to respond quickly to a large number of threats . One example is the protein S100A9 . It acts as an antimicrobial by preventing microbes from getting the nutrients they need , while also stimula... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"evolutionary",
"biology",
"biochemistry",
"and",
"chemical",
"biology"
] | 2020 | Evolution of multifunctionality through a pleiotropic substitution in the innate immune protein S100A9 |
The Notch signaling pathway consists of multiple types of receptors and ligands , whose interactions can be tuned by Fringe glycosyltransferases . A major challenge is to determine how these components control the specificity and directionality of Notch signaling in developmental contexts . Here , we analyzed same-cell... | In animals , cells use a process called Notch signaling to communicate with neighboring cells . During this process , a protein known as a DSL ligand from one cell binds to a protein called a Notch receptor on a neighboring cell . This triggers a series of events in the neighboring cell that change how the genes in thi... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology"
] | 2014 | Fringe proteins modulate Notch-ligand cis and trans interactions to specify signaling states |
Gliosis defined as reactive changes of resident glia is the primary response of the central nervous system ( CNS ) to trauma . The proliferation and fate controls of injury-reactivated glia are essential but remain largely unexplored . In zebrafish optic tectum , we found that stab injury drove a subset of radial glia ... | The brain contains networks of cells known as neurons that rapidly relay information from one place to another . Other brain cells called glial cells perform several roles to support and protect the neurons including holding them in position and supplying them with oxygen and other nutrients . Damage to the brain as a ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"stem",
"cells",
"and",
"regenerative",
"medicine",
"developmental",
"biology"
] | 2019 | Stochastic cell-cycle entry and cell-state-dependent fate outputs of injury-reactivated tectal radial glia in zebrafish |
The brain possesses a remarkable capacity to compensate for changes in inputs resulting from a range of sensory impairments . Developmental studies of sound localization have shown that adaptation to asymmetric hearing loss can be achieved either by reinterpreting altered spatial cues or by relying more on those cues t... | The brain normally compares the timing and intensity of the sounds that reach each ear to work out a sound’s origin . Hearing loss in one ear disrupts these between-ear comparisons , which causes listeners to make errors in this process . With time , however , the brain adapts to this hearing loss and once again learns... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"short",
"report",
"neuroscience"
] | 2016 | Behavioral training promotes multiple adaptive processes following acute hearing loss |
Estrogen Receptor-alpha ( ER ) drives 75% of breast cancers . Stimulation of the ER by estra-2-diol forms a transcriptionally-active chromatin-bound complex . Previous studies reported that ER binding follows a cyclical pattern . However , most studies have been limited to individual ER target genes and without replica... | Breast cancer is the most common type of cancer worldwide . The hormone estrogen drives the growth of 70% of breast cancer tumors . This form of breast cancer is called estrogen receptor positive ( ER+ ) breast cancer . In the early 2000s , several scientists found that some genes in ER+ breast cancers turn on and off ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"chromosomes",
"and",
"gene",
"expression",
"short",
"report",
"computational",
"and",
"systems",
"biology"
] | 2018 | Genome-wide Estrogen Receptor-α activation is sustained, not cyclical |
Hybrid sterility is one of the earliest postzygotic isolating mechanisms to evolve between two recently diverged species . Here we identify causes underlying hybrid infertility of two recently diverged fission yeast species Schizosaccharomyces pombe and S . kambucha , which mate to form viable hybrid diploids that effi... | It is widely thought that all of the billions of species on Earth are descended from a common ancestor . New species are created via a process called speciation , and nature employs various ‘barriers’ to keep closely related species distinct from one another . One of these barriers is called hybrid sterility . Horses a... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"chromosomes",
"and",
"gene",
"expression",
"genetics",
"and",
"genomics"
] | 2014 | Genome rearrangements and pervasive meiotic drive cause hybrid infertility in fission yeast |
Despite their potential interplay , multiple routes of many disease transmissions are often investigated separately . As a unifying framework for understanding parasite spread through interdependent transmission paths , we present the ‘ecomultiplex’ model , where the multiple transmission paths among a diverse communit... | Many infectious diseases are contained within a species , so animals from other species are not at risk of catching them . But some diseases – known as zoonoses – can spread between animals and humans . Zoonoses are often transmitted from one host to the next by insects that feed on both animals and humans . Many well-... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"ecology",
"epidemiology",
"and",
"global",
"health"
] | 2018 | Ecological multiplex interactions determine the role of species for parasite spread amplification |
Heterochromatic gene silencing is an important form of gene regulation that usually requires specific histone modifications . A popular model posits that inheritance of modified histones , especially in the form of H3-H4 tetramers , underlies inheritance of heterochromatin . Because H3-H4 tetramers are randomly distrib... | A crucial process in life is the ability of cells to pass on useful information to their descendants . Some of this information is encoded within molecules of DNA , including genes that contain specific coded instructions . Another layer of information helps to specify whether individual genes are switched on or off , ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"chromosomes",
"and",
"gene",
"expression"
] | 2019 | Epigenetic memory independent of symmetric histone inheritance |
Embryonic anterior–posterior patterning is well understood in Drosophila , which uses ‘long germ’ embryogenesis , in which all segments are patterned before cellularization . In contrast , most insects use ‘short germ’ embryogenesis , wherein only head and thorax are patterned in a syncytial environment while the remai... | Networks of genes that work together are widespread in nature . The conservation of individual genes across species and the tendency of their networks to stick together is a sign that they are working efficiently . Furthermore , it is common for existing gene networks to be adapted to perform new tasks , instead of new... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology",
"evolutionary",
"biology"
] | 2014 | Dual mode of embryonic development is highlighted by expression and function of Nasonia pair-rule genes |
Several different endocytic pathways have been proposed to function in mammalian cells . Clathrin-coated pits are well defined , but the identity , mechanism and function of alternative pathways have been controversial . Here we apply universal chemical labelling of plasma membrane proteins to define all primary endocy... | Cells are enclosed by a ‘plasma membrane’ that allows nutrients and certain small molecules to move in and out of cells . Larger molecules—such as proteins—are carried into cells through a process known as endocytosis , where part of the plasma membrane engulfs the molecule and transports it through the cell inside a b... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology"
] | 2014 | Clathrin-independent pathways do not contribute significantly to endocytic flux |
Hypoxia Inducible transcription Factors ( HIFs ) are principally regulated by the 2-oxoglutarate and Iron ( II ) prolyl hydroxylase ( PHD ) enzymes , which hydroxylate the HIFα subunit , facilitating its proteasome-mediated degradation . Observations that HIFα hydroxylation can be impaired even when oxygen is sufficien... | Most organisms have developed strategies to survive in low oxygen environments . Central to this response are proteins called Hypoxia Inducible Factors ( HIFs ) , which activate genes involved in energy production and blood vessel growth when oxygen is scarce . When plenty of oxygen is present , HIFs are rapidly broken... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology",
"cell",
"biology"
] | 2017 | The vacuolar-ATPase complex and assembly factors, TMEM199 and CCDC115, control HIF1α prolyl hydroxylation by regulating cellular iron levels |
We collated contact tracing data from COVID-19 clusters in Singapore and Tianjin , China and estimated the extent of pre-symptomatic transmission by estimating incubation periods and serial intervals . The mean incubation periods accounting for intermediate cases were 4 . 91 days ( 95%CI 4 . 35 , 5 . 69 ) and 7 . 54 ( ... | The first cases of COVID-19 were identified in Wuhan , a city in Central China , in December 2019 . The virus quickly spread within the country and then across the globe . By the third week in January , the first cases were confirmed in Tianjin , a city in Northern China , and in Singapore , a city country in Southeast... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"epidemiology",
"and",
"global",
"health"
] | 2020 | Evidence for transmission of COVID-19 prior to symptom onset |
Life history theory posits that the sequence and timing of events in an organism's lifespan are fine-tuned by evolution to maximize the production of viable offspring . In a virus , a life history strategy is largely manifested in its replication mode . Here , we develop a stochastic mathematical model to infer the rep... | Viruses with genetic information made up of molecules of RNA can multiply quickly , but not very accurately . This means that many errors , or mutations , occur when the RNA is copied to create new viruses . The advantage of this rapid , but mistake-filled , RNA replication process is that some of the mutations will be... | [
"Abstract",
"Introduction",
"Results",
"Discussion"
] | [
"microbiology",
"and",
"infectious",
"disease"
] | 2015 | Experimentally guided models reveal replication principles that shape the mutation distribution of RNA viruses |
Mammalian articular cartilage is an avascular tissue with poor capacity for spontaneous repair . Here , we show that embryonic development of cartilage in the skate ( Leucoraja erinacea ) mirrors that of mammals , with developing chondrocytes co-expressing genes encoding the transcription factors Sox5 , Sox6 and Sox9 .... | For our joints to move around freely , they are lubricated with cartilage . In growing mammals , this tissue is continuously made by the body . But , by adulthood , this cartilage will have been almost entirely replaced by bone . It is also difficult for adult bodies to replenish what cartilage does remain – such as th... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"stem",
"cells",
"and",
"regenerative",
"medicine",
"developmental",
"biology"
] | 2020 | Adult chondrogenesis and spontaneous cartilage repair in the skate, Leucoraja erinacea |
The organization of DNA into chromatin is dynamic; nucleosomes are frequently displaced to facilitate the ability of regulatory proteins to access specific DNA elements . To gain insight into nucleosome dynamics , and to follow how dynamics change during differentiation , we used a technique called time-ChIP to quantit... | In animal , plant and other eukaryotic cells , DNA wraps around histone proteins to form structures called nucleosomes . This compacts long strands of DNA to fit them inside a cell . However , nucleosomes also act as barriers that can prevent access to the DNA . This affects the activity , or “expression” , of genes be... | [
"Abstract",
"Introduction",
"Results",
"Discussion"
] | [
"chromosomes",
"and",
"gene",
"expression"
] | 2016 | Enhancer regions show high histone H3.3 turnover that changes during differentiation |
Mutating RNA virus genomes to alter codon pair ( CP ) frequencies and reduce translation efficiency has been advocated as a method to generate safe , attenuated virus vaccines . However , selection for disfavoured CPs leads to unintended increases in CpG and UpA dinucleotide frequencies that also attenuate replication ... | Viruses cause a number of diseases in humans , such as measles or polio , that can be prevented by vaccines . Some vaccines contain whole viruses that have been weakened or modified so that they do not cause illness . In response to infection with these weakened viruses , the immune system creates cells that can ‘recog... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"microbiology",
"and",
"infectious",
"disease"
] | 2014 | RNA virus attenuation by codon pair deoptimisation is an artefact of increases in CpG/UpA dinucleotide frequencies |
In Gram-negative bacteria , lipid asymmetry is critical for the function of the outer membrane ( OM ) as a selective permeability barrier , but how it is established and maintained is poorly understood . Here , we characterize a non-canonical ATP-binding cassette ( ABC ) transporter in Escherichia coli that provides en... | Escherichia coli are bacteria that can cause vomiting and diarrhoea in humans and other mammals . Each E . coli cell is surrounded by two membranes , which are each made of two layers of fat molecules known as lipids . The outer membrane prevents the entry of toxic compounds and allows E . coli to withstand damaging ag... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials"
] | [
"biochemistry",
"and",
"chemical",
"biology",
"microbiology",
"and",
"infectious",
"disease"
] | 2016 | Defining key roles for auxiliary proteins in an ABC transporter that maintains bacterial outer membrane lipid asymmetry |
A single , low dose of the NMDA receptor antagonist ketamine produces rapid antidepressant actions in treatment-resistant depressed patients . Understanding the cellular mechanisms underlying this will lead to new therapies for treating major depression . NMDARs are heteromultimeric complexes formed through association... | Depression is the leading cause of disability worldwide , with hundreds of millions of people living with the condition . The ‘gold standard’ for depression treatment involves a combination of psychotherapy and medication . Unfortunately , current antidepressant medications do not help everyone , waiting lists for psyc... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology",
"neuroscience"
] | 2014 | GluN2B-containing NMDA receptors regulate depression-like behavior and are critical for the rapid antidepressant actions of ketamine |
In Saccharomyces cerevisiae and in humans , the telomerase RNA subunit is bound by Ku , a ring-shaped protein heterodimer best known for its function in DNA repair . Ku binding to yeast telomerase RNA promotes telomere lengthening and telomerase recruitment to telomeres , but how this is achieved remains unknown . Usin... | Inside a cell's nucleus , DNA is packaged into structures called chromosomes . The ends of every chromosome are capped by repeating sequences of DNA known as telomeres , which protect the chromosomes from damage . Every time a cell divides , the telomeres shorten . If telomere length falls below a critical level , the ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"chromosomes",
"and",
"gene",
"expression"
] | 2015 | The Ku subunit of telomerase binds Sir4 to recruit telomerase to lengthen telomeres in S. cerevisiae |
Many intercellular signals are synthesised as transmembrane precursors that are released by proteolytic cleavage ( ‘shedding’ ) from the cell surface . ADAM17 , a membrane-tethered metalloprotease , is the primary shedding enzyme responsible for the release of the inflammatory cytokine TNFα and several EGF receptor lig... | Cells in the human body communicate with one another for many different reasons , including to help organs develop correctly and to produce a healthy reponse to injury and infection . Signalling proteins , such as growth factors and cytokines , form the main language of this communication . Initially , many growth fact... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology",
"cell",
"biology"
] | 2018 | FRMD8 promotes inflammatory and growth factor signalling by stabilising the iRhom/ADAM17 sheddase complex |
Bacterial type IV secretion systems ( T4SSs ) are molecular machines that can mediate interbacterial DNA transfer through conjugation and delivery of effector molecules into host cells . The Helicobacter pylori Cag T4SS translocates CagA , a bacterial oncoprotein , into gastric cells , contributing to gastric cancer pa... | Helicobacter pylori is a species of bacterium that can colonize the human stomach , causing changes that greatly increase the risk of ulcers and stomach cancer . Some strains of H . pylori produce a protein called CagA , which alters how stomach cells grow and divide . The bacterium injects CagA directly into stomach c... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"structural",
"biology",
"and",
"molecular",
"biophysics",
"microbiology",
"and",
"infectious",
"disease"
] | 2019 | Structure of the Helicobacter pylori Cag type IV secretion system |
Differentiation programs such as meiosis depend on extensive gene regulation to mediate cellular morphogenesis . Meiosis requires transient removal of the outer kinetochore , the complex that connects microtubules to chromosomes . How the meiotic gene expression program temporally restricts kinetochore function is unkn... | DNA stores the genetic information needed to make proteins and other molecules inside cells . To make a protein , cells use a particular section of DNA as a template to make molecules of messenger RNA ( or mRNA for short ) , which are then translated into the corresponding protein . Inside yeast , humans and other euka... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"chromosomes",
"and",
"gene",
"expression"
] | 2017 | Kinetochore inactivation by expression of a repressive mRNA |
To date , microglia subsets in the healthy CNS have not been identified . Utilizing autofluorescence ( AF ) as a discriminating parameter , we identified two novel microglia subsets in both mice and non-human primates , termed autofluorescence-positive ( AF+ ) and negative ( AF− ) . While their proportion remained cons... | Microglia are a unique type of immune cell found in the brain and spinal cord . Their job is to support neurons , defend against invading microbes , clear debris and remove dying neurons by engulfing them . Despite these diverse roles , scientists have long believed that there is only a single type of microglial cell ,... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience",
"tools",
"and",
"resources",
"immunology",
"and",
"inflammation"
] | 2020 | Differential accumulation of storage bodies with aging defines discrete subsets of microglia in the healthy brain |
The speciose mammalian order Eulipotyphla ( moles , shrews , hedgehogs , solenodons ) combines an unusual diversity of semi-aquatic , semi-fossorial , and fossorial forms that arose from terrestrial forbearers . However , our understanding of the ecomorphological pathways leading to these lifestyles has been confounded... | The shrews , moles and hedgehogs that surround us all belong to the same large group of insect-eating mammals . While most members in this ‘Eulipotyphla order’ trot on land , some , like moles , have evolved to hunt their prey underground . A few species , such as the water shrews , have even ventured to adopt a semi-a... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"evolutionary",
"biology"
] | 2021 | Myoglobin primary structure reveals multiple convergent transitions to semi-aquatic life in the world's smallest mammalian divers |
To capture the functional diversity of microbiota , one must identify metabolic functions and species of interest within hundreds or thousands of microorganisms . We present Metage2Metabo ( M2M ) a resource that meets the need for de novo functional screening of genome-scale metabolic networks ( GSMNs ) at the scale of... | All the microbes that live in a specific environment , for example an organ , are collectively called the microbiota . In humans , the microbiota of the gut has been extensively studied by sequencing the DNA of the different microbes to identify them and determine the roles they play in health and disease . The DNA seq... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"computational",
"and",
"systems",
"biology",
"tools",
"and",
"resources"
] | 2020 | Metage2Metabo, microbiota-scale metabolic complementarity for the identification of key species |
New discoveries and dating of fossil remains from the Rising Star cave system , Cradle of Humankind , South Africa , have strong implications for our understanding of Pleistocene human evolution in Africa . Direct dating of Homo naledi fossils from the Dinaledi Chamber ( Berger et al . , 2015 ) shows that they were dep... | Species of ancient humans and the extinct relatives of our ancestors are typically described from a limited number of fossils . However , this was not the case with Homo naledi . More than 1 , 500 fossils representing at least 15 individuals of this species were unearthed from the Rising Star cave system in South Afric... | [
"Abstract",
"Introduction"
] | [
"evolutionary",
"biology",
"short",
"report"
] | 2017 | Homo naledi and Pleistocene hominin evolution in subequatorial Africa |
The HIV-1 Vpr accessory protein induces ubiquitin/proteasome-dependent degradation of many cellular proteins by recruiting them to a cullin4A-DDB1-DCAF1 complex . In so doing , Vpr enhances HIV-1 gene expression and induces ( G2/M ) cell cycle arrest . However , the identities of Vpr target proteins through which these... | Like all viruses , the human immunodeficiency virus 1 ( HIV-1 ) cannot replicate on its own; to multiply , it needs to exploit the molecular machinery of a cell . A set of HIV-1 proteins is vital in this hijacking process , and they are required for the virus to make more of itself . However , HIV-1 also carries access... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"microbiology",
"and",
"infectious",
"disease"
] | 2020 | HIV-1 Vpr induces cell cycle arrest and enhances viral gene expression by depleting CCDC137 |
Solar irradiation including ultraviolet ( UV ) light causes tissue damage by generating reactive free radicals that can be electrophilic or nucleophilic due to unpaired electrons . Little is known about how free radicals induced by natural sunlight are rapidly detected and avoided by animals . We discover that Drosophi... | Atoms are made up of a nucleus that contains protons and neutrons , which is orbited by electrons . The electrons orbit within shells that surround the nucleus and each shell can contain a specific number of electrons . A particle with an outer shell that is missing one or more electrons will be unstable and highly rea... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2016 | Nucleophile sensitivity of Drosophila TRPA1 underlies light-induced feeding deterrence |
Visceral adiposity confers significant risk for developing metabolic disease in obesity whereas preferential expansion of subcutaneous white adipose tissue ( WAT ) appears protective . Unlike subcutaneous WAT , visceral WAT is resistant to adopting a protective thermogenic phenotype characterized by the accumulation of... | Mammals have different types of fat cells in their bodies . White fat cells store energy for later use , and brown and beige fat cells burn energy to help keep the body warm . Individuals who are obese typically have too many white fat cells in and around their belly . This belly fat , also called visceral fat , accumu... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"medicine"
] | 2017 | Directing visceral white adipocyte precursors to a thermogenic adipocyte fate improves insulin sensitivity in obese mice |
Segmented RNA viruses are ubiquitous pathogens , which include influenza viruses and rotaviruses . A major challenge in understanding their assembly is the combinatorial problem of a non-random selection of a full genomic set of distinct RNAs . This process involves complex RNA-RNA and protein-RNA interactions , which ... | Rotavirus is a highly infectious virus that affects children worldwide , causing severe diarrhoea . Despite the introduction of several highly effective vaccines , more than 200 , 000 children still die from rotavirus each year . There are currently no drugs that can combat this disease once a child has been infected .... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"structural",
"biology",
"and",
"molecular",
"biophysics",
"microbiology",
"and",
"infectious",
"disease"
] | 2017 | Protein-mediated RNA folding governs sequence-specific interactions between rotavirus genome segments |
Despite vast diversity in metabolites and the matching substrate specificity of their transporters , little is known about how evolution of transporter substrate specificities is linked to emergence of substrates via evolution of biosynthetic pathways . Transporter specificity towards the recently evolved glucosinolate... | All living cells are surrounded by membranes that protect them from the external environment . The membrane contains proteins called transporters , which move nutrients and other molecules ( known as substrates ) across the membrane . A variety of transporters have evolved to move the hundreds of thousands of different... | [
"Abstract",
"Introduction",
"Results",
"and",
"discussion",
"Materials",
"and",
"methods"
] | [
"plant",
"biology",
"biochemistry",
"and",
"chemical",
"biology"
] | 2017 | Origin and evolution of transporter substrate specificity within the NPF family |
Microorganisms often exhibit a history-dependent phenotypic response after exposure to a stimulus which can be imperative for proper function . However , cells frequently experience unexpected environmental perturbations that might induce phenotypic switching . How cells maintain phenotypic states in the face of enviro... | All organisms need to be able to react to the challenges thrown at them by their changing environment . Yeast , bacteria and other microbes have networks of genes that can give rise to many different traits and characteristics , which can also be referred to as phenotypes . A change in the environment can alter the act... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"physics",
"of",
"living",
"systems",
"computational",
"and",
"systems",
"biology"
] | 2015 | Phenotypic states become increasingly sensitive to perturbations near a bifurcation in a synthetic gene network |
Understanding how bacteria affect plant health is crucial for developing sustainable crop production systems . We coupled ecological sampling and genome sequencing to characterize the population genetic history of Rhodococcus and the distribution patterns of virulence plasmids in isolates from nurseries . Analysis of c... | All organisms live in a world teeming with bacteria . Some bacteria are beneficial and , for example , provide their hosts with nutrients . Others cause harm , for example , by stealing nutrients and causing disease . Many bacteria can also gain DNA from other bacteria , and the genes encoded within the new DNA can hel... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"plant",
"biology",
"epidemiology",
"and",
"global",
"health"
] | 2017 | Evolutionary transitions between beneficial and phytopathogenic Rhodococcus challenge disease management |
Spontaneous fluctuations of neural activity may explain why sensory responses vary across repeated presentations of the same physical stimulus . To test this hypothesis , we recorded electroencephalography in humans during stimulation with identical visual stimuli and analyzed how prestimulus neural oscillations modula... | Give a computer the same input and you should get back the same response every time . But give a human brain the same sensory input and you will see a range of different responses . This is because the brain’s response to sensory input depends not only on the properties of the input , but also on its own internal state... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2019 | Multiple mechanisms link prestimulus neural oscillations to sensory responses |
According to the World Health Organization ( WHO ) , in 2018 , an estimated 228 million malaria cases occurred worldwide with most cases occurring in sub-Saharan Africa . Scale-up of vector control tools coupled with increased access to diagnosis and effective treatment has resulted in a large decline in malaria preval... | Malaria infects around 230 million people each year , mostly in sub-Saharan Africa , and causes more than 400 , 000 deaths . Pregnant women are particularly susceptible to malaria . The parasite that causes malaria can sap the mother’s iron stores and may starve the baby of nutrients . Babies born to infected mothers o... | [
"Abstract",
"Introduction",
"Materials",
"and",
"methods",
"Results",
"Discussion"
] | [
"epidemiology",
"and",
"global",
"health"
] | 2021 | Relationship between changing malaria burden and low birth weight in sub-Saharan Africa: A difference-in-differences study via a pair-of-pairs approach |
The Escherichia coli SMC complex , MukBEF , acts in chromosome segregation . MukBEF shares the distinctive architecture of other SMC complexes , with one prominent difference; unlike other kleisins , MukF forms dimers through its N-terminal domain . We show that a 4-helix bundle adjacent to the MukF dimerisation domain... | Most DNA in a cell is arranged in structures called chromosomes . From bacteria to humans , chromosomes have to be compacted and highly organized to allow the cells to maintain and use their genetic information . In all organisms , large ring-shaped protein complexes play a crucial role in managing chromosomes . They t... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"chromosomes",
"and",
"gene",
"expression"
] | 2018 | MukB ATPases are regulated independently by the N- and C-terminal domains of MukF kleisin |
Planar cell polarity ( PCP ) signaling controls the polarization of cells within the plane of an epithelium . Two molecular modules composed of Fat ( Ft ) /Dachsous ( Ds ) /Four-jointed ( Fj ) and a ‘PCP-core’ including Frizzled ( Fz ) and Dishevelled ( Dsh ) contribute to polarization of individual cells . How polarit... | Almost all cells exhibit some sort of polarity: the epithelial cells that line the digestive tract , for example , have an apical domain , which faces out , and a basal domain , which faces the tissue underneath . Some epithelial cells also exhibit planar cell polarity: this involves key structures within the cell bein... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology",
"cell",
"biology"
] | 2014 | Microtubules provide directional information for core PCP function |
Axon injury triggers a series of changes in the axonal cytoskeleton that are prerequisites for effective axon regeneration . In Caenorhabditis elegans the signaling protein Exchange Factor for ARF-6 ( EFA-6 ) is a potent intrinsic inhibitor of axon regrowth . Here we show that axon injury triggers rapid EFA-6-dependent... | In the nervous system , cells called neurons carry information around the body . These cells have long thin projections called axons that allow the information to pass very quickly along the cell to junctions with other neurons . Neurons in adult mammals are limited in their ability to regenerate , so any damage to axo... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology",
"neuroscience"
] | 2015 | Axon injury triggers EFA-6 mediated destabilization of axonal microtubules via TACC and doublecortin like kinase |
Natural environments feature mixtures of odorants of diverse quantities , qualities and complexities . Olfactory receptor neurons ( ORNs ) are the first layer in the sensory pathway and transmit the olfactory signal to higher regions of the brain . Yet , the response of ORNs to mixtures is strongly non-additive , and e... | When ordering in a coffee shop , you probably recognize and enjoy the aroma of freshly roasted coffee beans . But as well as coffee , you can also smell the croissants behind the counter and maybe even the perfume or cologne of the person next to you . Each of these scents consists of a collection of chemicals , or odo... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"computational",
"and",
"systems",
"biology",
"neuroscience"
] | 2018 | Antagonism in olfactory receptor neurons and its implications for the perception of odor mixtures |
Macrophage-mediated phagocytosis and cytokine production represent the front lines of resistance to bacterial invaders . A key feature of this pro-inflammatory response in mammals is the complex remodeling of cellular metabolism towards aerobic glycolysis . Although the function of bactericidal macrophages is highly co... | Macrophages are the immune system's first line of defense against infection . These immune cells can be found in all tissues and organs , watching for signs of disease-causing agents and targeting them for destruction . Maintaining macrophages costs energy , so to minimize waste , these cells spend most of their lives ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"immunology",
"and",
"inflammation"
] | 2019 | Drosophila macrophages switch to aerobic glycolysis to mount effective antibacterial defense |
High-income countries are experiencing measles reemergence as the result of suboptimal vaccine uptake and marked immunity gaps among adults . In 2017 , the Italian Government introduced mandatory vaccination at school entry for ten infectious diseases , including measles . However , sustainable and effective vaccinatio... | Measles is one of the world’s most contagious diseases causing thousands of deaths every year , despite a safe and effective vaccine being available since the 1960s . High rates of vaccination – about 95% of each age group – are required to eliminate measles , but national and global health agencies struggle to achieve... | [
"Abstract",
"Introduction",
"Materials",
"and",
"methods",
"Results",
"Discussion"
] | [
"epidemiology",
"and",
"global",
"health"
] | 2019 | Parental vaccination to reduce measles immunity gaps in Italy |
The identification of clinically viable strategies for overcoming resistance to platinum chemotherapy in lung adenocarcinoma has previously been hampered by inappropriately tailored in vitro assays of drug response . Therefore , using a pulse model that closely mimics the in vivo pharmacokinetics of platinum therapy , ... | Lung adenocarcinoma is the most common type of lung cancer , and it emerges because of a variety of harmful genetic changes , or mutations . Two lung cancer patients – or indeed , two different sets of cancerous cells within a patient – may therefore carry different damaging mutations . A group of drugs called platinum... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cancer",
"biology"
] | 2020 | Analysis of pulsed cisplatin signalling dynamics identifies effectors of resistance in lung adenocarcinoma |
Synaptic plasticity , which underlies learning and memory , depends on calcium elevation in neurons , but the precise relationship between calcium and spatiotemporal patterns of synaptic inputs is unclear . Here , we develop a biologically realistic computational model of striatal spiny projection neurons with sophisti... | How do we form new memories ? The human brain contains almost 90 billion neurons , which communicate with one another at junctions called synapses . Each neuron has a shape a little like that of a tree , and is covered in branches called dendrites . Synapses typically form between the end of one neuron and a dendrite o... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"computational",
"and",
"systems",
"biology",
"neuroscience"
] | 2018 | Inhibition enhances spatially-specific calcium encoding of synaptic input patterns in a biologically constrained model |
Transcriptional elongation by RNA polymerase ( Pol ) II is essential for gene expression during cell growth and differentiation . The positive transcription elongation factor b ( P-TEFb ) stimulates transcriptional elongation by phosphorylating Pol II and antagonizing negative elongation factors . A reservoir of P-TEFb... | To express a gene to make a protein , the gene's DNA must first be transcribed to produce molecules of messenger RNA . The start of the transcription process features two milestones . First , an enzyme called RNA Polymerase II starts the process . Shortly afterwards , however , the process pauses and only starts again ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology",
"cell",
"biology"
] | 2014 | LARP7 suppresses P-TEFb activity to inhibit breast cancer progression and metastasis |
The Positive Transcription Elongation Factor b ( P-TEFb ) phosphorylates Ser2 residues of the C-terminal domain ( CTD ) of the largest subunit ( RPB1 ) of RNA polymerase II and is essential for the transition from transcription initiation to elongation in vivo . Surprisingly , P-TEFb exhibits Ser5 phosphorylation activ... | DNA contains the instructions for making proteins , which build and maintain our cells . So that the information encoded in DNA can be used , a molecular machine called RNA polymerase II makes copies of specific genes . These copies , in the form of a molecule called RNA , convey the instructions for making proteins to... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology"
] | 2019 | Tyr1 phosphorylation promotes phosphorylation of Ser2 on the C-terminal domain of eukaryotic RNA polymerase II by P-TEFb |
Variation in floral displays , both between and within species , has been long known to be shaped by the mutualistic interactions that plants establish with their pollinators . However , increasing evidence suggests that abiotic selection pressures influence floral diversity as well . Here , we analyse the genetic and ... | Flowers are an important part of how many plants reproduce . Their distinctive colours , shapes and patterns attract specific pollinators , but they can also help to protect the plant from predators and environmental stresses . Many flowers contain pigments that absorb ultraviolet ( UV ) light to display distinct UV pa... | [
"Abstract",
"Introduction",
"Results",
"and",
"discussion",
"Materials",
"and",
"methods"
] | [
"evolutionary",
"biology",
"genetics",
"and",
"genomics"
] | 2022 | Genetic basis and dual adaptive role of floral pigmentation in sunflowers |
Plaque rupture occurs if stress within coronary lesions exceeds the protection exerted by the fibrous cap overlying the necrotic lipid core . However , very little is known about the biomechanical stress exerting this disrupting force . Employing optical coherence tomography ( OCT ) , we generated plaque models and per... | Heart attacks are caused by a blockage in arteries that supply oxygen to the heart . This often happens when fatty deposits ( or ‘plaques’ ) that line blood vessels break off and create a clot . To identify individuals most at risk of this occurring , physicians currently use symptoms , family history , blood tests , i... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"medicine"
] | 2021 | Coronary plaque composition influences biomechanical stress and predicts plaque rupture in a morpho-mechanic OCT analysis |
Early adversity is a risk factor for the development of adult psychopathology . Common across multiple rodent models of early adversity is increased signaling via forebrain Gq-coupled neurotransmitter receptors . We addressed whether enhanced Gq-mediated signaling in forebrain excitatory neurons during postnatal life c... | Stress and adversity in early childhood can have long-lasting effects , predisposing people to mental illness and mood disorders in adult life . The weeks immediately before and after birth are critical for establishing key networks of neurons in the brain . Therefore , any disruption to these neural circuits during th... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2020 | Chronic postnatal chemogenetic activation of forebrain excitatory neurons evokes persistent changes in mood behavior |
During hibernation , animals cycle between torpor and arousal . These cycles involve dramatic but poorly understood mechanisms of dynamic physiological regulation at the level of gene expression . Each cycle , Brown Adipose Tissue ( BAT ) drives periodic arousal from torpor by generating essential heat . We applied dig... | Many mammals hibernate to avoid food scarcity and harsh conditions during winter . Hibernation involves entering a state called torpor , which drastically reduces the amount of energy used by the body . During torpor , body temperature also decreases . This is particularly exemplified in ground squirrels , whose body t... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"genetics",
"and",
"genomics"
] | 2015 | Enhanced stability and polyadenylation of select mRNAs support rapid thermogenesis in the brown fat of a hibernator |
Pericentromeric satellite repeats are enriched in 5-methylcytosine ( 5mC ) . Loss of 5mC at these sequences is common in cancer and is a hallmark of Immunodeficiency , Centromere and Facial abnormalities ( ICF ) syndrome . While the general importance of 5mC is well-established , the specific functions of 5mC at perice... | Cells package DNA into structures called chromosomes . When cells divide , each chromosome duplicates , and a structure called a centromere initially holds the copies together . The sequences of DNA on either side of the centromeres are often highly repetitive . In backboned animals , this DNA normally also has extra c... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"chromosomes",
"and",
"gene",
"expression",
"research",
"communication"
] | 2018 | Pericentromeric hypomethylation elicits an interferon response in an animal model of ICF syndrome |
Many stem cells divide asymmetrically in order to balance self-renewal with differentiation . The essence of asymmetric cell division ( ACD ) is the polarization of cells and subsequent division , leading to unequal compartmentalization of cellular/extracellular components that confer distinct cell fates to daughter ce... | The tissues of an animal's body are built from cells that are originally derived from stem cells . Each stem cell can divide and give rise to another stem cell and a cell that will become a more specific type of cell—such as a nerve cell , muscle cell , or sperm cell . If this asymmetric cell division is disrupted , it... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"stem",
"cells",
"and",
"regenerative",
"medicine",
"cell",
"biology"
] | 2015 | The polarity protein Baz forms a platform for the centrosome orientation during asymmetric stem cell division in the Drosophila male germline |
Human gut Bacteroides use surface-exposed lipoproteins to bind and metabolize complex polysaccharides . Although vitamins and other nutrients are also essential for commensal fitness , much less is known about how commensal bacteria compete with each other or the host for these critical resources . Unlike in Escherichi... | Eating is the first step in an hours-long process that extracts the nutrients we need to live . It not only nourishes us , but also a vast community of bacteria in our gut called the microbiota . The gut microbiota acts like an extension of our immune system and helps us stay healthy in many ways . For example , it blo... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"microbiology",
"and",
"infectious",
"disease"
] | 2018 | Human gut Bacteroides capture vitamin B12 via cell surface-exposed lipoproteins |
Clarifying gene expression in narrowly defined neuronal populations can provide insight into cellular identity , computation , and functionality . Here , we used next-generation RNA sequencing ( RNA-seq ) to produce a quantitative , whole genome characterization of gene expression for the major excitatory neuronal clas... | Both mouse and human brains are made up of many millions of cells called neurons that are interconnected to form circuits . These neurons are not all the same , because different classes of neurons express different complements of genes . Neurons that express similar genes tend to look and act alike , whereas neurons t... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"tools",
"and",
"resources",
"neuroscience"
] | 2016 | Hipposeq: a comprehensive RNA-seq database of gene expression in hippocampal principal neurons |
Risk for Atrial Fibrillation ( AF ) , the most common human arrhythmia , has a major genetic component . The T-box transcription factor TBX5 influences human AF risk , and adult-specific Tbx5-mutant mice demonstrate spontaneous AF . We report that TBX5 is critical for cellular Ca2+ homeostasis , providing a molecular m... | The human heart contains four distinct chambers that work together to pump blood around the body . In individuals with a condition called atrial fibrillation , two of the chambers ( known as the atria ) beat irregularly and are unable to push all the blood they hold into the other two chambers of the heart . This can c... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"structural",
"biology",
"and",
"molecular",
"biophysics"
] | 2019 | A calcium transport mechanism for atrial fibrillation in Tbx5-mutant mice |
Cells are fundamental units of life , but little is known about evolution of cell states . Induced pluripotent stem cells ( iPSCs ) are once differentiated cells that have been re-programmed to an embryonic stem cell-like state , providing a powerful platform for biology and medicine . However , they have been limited ... | Stem cells are ‘pluripotent’—in other words , they have the potential to become many other cell types . This ability makes them extremely valuable for research . They also hold substantial promise for medical applications , since they can be used to replace cells lost or damaged by disease or injury . Embryos represent... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"stem",
"cells",
"and",
"regenerative",
"medicine"
] | 2013 | Mammalian genes induce partially reprogrammed pluripotent stem cells in non-mammalian vertebrate and invertebrate species |
Cardiomyocyte ( CM ) maturation in mammals is accompanied by a sharp decline in their proliferative and regenerative potential shortly after birth . In this study , we explored the role of the mechanical properties of the underlying matrix in the regulation of CM maturation . We show that rat and mouse neonatal CMs cul... | Heart muscle contracts and relaxes in a regular rhythm to pump blood around the body . Soon after birth , the cells that form our heart muscle stop multiplying . As we grow , these cells increase in size and their internal skeleton—called myoskeleton—becomes more complex , to withstand the demands of pumping more blood... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology",
"cell",
"biology"
] | 2015 | Reduced matrix rigidity promotes neonatal cardiomyocyte dedifferentiation, proliferation and clonal expansion |
We take a functional genomics approach to congenital heart disease mechanism . We used DamID to establish a robust set of target genes for NKX2-5 wild type and disease associated NKX2-5 mutations to model loss-of-function in gene regulatory networks . NKX2-5 mutants , including those with a crippled homeodomain , bound... | Many genes working within large gene networks influence the development of heart muscle cells in humans and other animals . The activity of these genes is controlled in part by proteins called transcription factors , which bind to DNA and act as molecular switches . One transcription factor that is particularly importa... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology"
] | 2015 | NKX2-5 mutations causative for congenital heart disease retain functionality and are directed to hundreds of targets |
Bacterial small RNAs ( sRNAs ) are key elements of regulatory networks that modulate gene expression . The sRNA RydC of Salmonella sp . and Escherichia coli is an example of this class of riboregulators . Like many other sRNAs , RydC bears a ‘seed’ region that recognises specific transcripts through base-pairing , and ... | A crucial step in the production of proteins is the translation of messenger RNA molecules . Other RNA molecules called small RNAs are also involved in this process: these small RNAs bind to the messenger RNA molecules to either increase or decrease the production of proteins . Bacteria and other microorganisms use sma... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"structural",
"biology",
"and",
"molecular",
"biophysics"
] | 2014 | Recognition of the small regulatory RNA RydC by the bacterial Hfq protein |
The hippocampus is critical for episodic memory and computational studies have predicted specific functions for each hippocampal subregion . Particularly , the dentate gyrus ( DG ) is hypothesized to perform pattern separation by forming distinct representations of similar inputs . How pattern separation is achieved by... | Being able to keep memories of similar events separate in your mind is an essential part of remembering . If you use the same carpark every day , recalling where you left your car this morning is challenging , not because you have to remember an event from long ago , but because you have to distinguish between many sim... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2013 | Selection of distinct populations of dentate granule cells in response to inputs as a mechanism for pattern separation in mice |
Behavioral adaptation to environmental threats and subsequent social transmission of adaptive behavior has evolutionary implications . In Drosophila , exposure to parasitoid wasps leads to a sharp decline in oviposition . We show that exposure to predator elicits both an acute and learned oviposition depression , media... | Every animal must be able to adapt to threats and changes to their environment that could affect their survival . Some ‘social’ animals , such as honeybees and ants , go further than this , and also transmit information about a threat—and how to survive it—to other members of their species . This helpful behavior is no... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology",
"neuroscience"
] | 2015 | Social communication of predator-induced changes in Drosophila behavior and germ line physiology |
To provide an effective substrate for cognitive processes , functional brain networks should be able to reorganize and coordinate on a sub-second temporal scale . We used magnetoencephalography recordings of spontaneous activity to characterize whole-brain functional connectivity dynamics at high temporal resolution . ... | When subjects lie motionless inside scanners without any particular task to perform , their brains show stereotyped patterns of activity across regions known as resting state networks . Each network consists of areas with a common function , such as the ‘motor’ network or the ‘visual’ network . The role of resting stat... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2014 | Fast transient networks in spontaneous human brain activity |
Essential to spatial orientation in the natural environment is a dynamic representation of direction and distance to objects . Despite the importance of 3D spatial localization to parse objects in the environment and to guide movement , most neurophysiological investigations of sensory mapping have been limited to stud... | Humans and other animals can navigate their natural environments seamlessly , even if there are obstacles in their path . However , it is not well understood how an animal’s brain processes information from the senses to map where it is in relation to these objects , both in terms of distance and direction . Bats can h... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2018 | Dynamic representation of 3D auditory space in the midbrain of the free-flying echolocating bat |
New therapeutic targets for oral squamous cell carcinoma ( OSCC ) are urgently needed . We conducted genome-wide CRISPR-Cas9 screens in 21 OSCC cell lines , primarily derived from Asians , to identify genetic vulnerabilities that can be explored as therapeutic targets . We identify known and novel fitness genes and dem... | Many types of cancer now have 'targeted treatments' , which specifically home in on genes cancer cells rely on for survival . But there are very few of these treatments available for the most common type of mouth cancer , oral squamous cell carcinoma , which around 350 , 000 people are diagnosed with each year . Design... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"genetics",
"and",
"genomics",
"cancer",
"biology"
] | 2020 | Genome-wide CRISPR screens of oral squamous cell carcinoma reveal fitness genes in the Hippo pathway |
Adeno-associated virus ( AAV ) -mediated gene therapies are rapidly advancing to the clinic , and AAV engineering has resulted in vectors with increased ability to deliver therapeutic genes . Although the choice of vector is critical , quantitative comparison of AAVs , especially in large animals , remains challenging ... | Gene therapy is an experimental approach to treating disease that involves altering faulty genes or replacing them with new , working copies . Most often , the new genetic material is delivered into cells using a modified virus that no longer causes disease , called a viral vector . Virus-mediated gene therapies are cu... | [
"Abstract",
"Introduction",
"Materials",
"and",
"methods",
"Results",
"Discussion"
] | [
"medicine",
"neuroscience"
] | 2021 | scAAVengr, a transcriptome-based pipeline for quantitative ranking of engineered AAVs with single-cell resolution |
Splenic dendritic cells ( DCs ) present blood-borne antigens to lymphocytes to promote T cell and antibody responses . The cues involved in positioning DCs in areas of antigen exposure in the spleen are undefined . Here we show that CD4+ DCs highly express EBI2 and migrate to its oxysterol ligand , 7α , 25-OHC . In mic... | One of the main roles of the spleen is to make the antibodies that protect the body against viruses , bacteria and other microorganisms . Antibodies are made by B cells , which are a type of white blood cell , after they have been exposed to antigens . For most antibody responses , it is also necessary for the B cells ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"microbiology",
"and",
"infectious",
"disease",
"immunology",
"and",
"inflammation"
] | 2013 | EBI2-mediated bridging channel positioning supports splenic dendritic cell homeostasis and particulate antigen capture |
Animal behavior has been studied for centuries , but few efficient methods are available to automatically identify and classify it . Quantitative behavioral studies have been hindered by the subjective and imprecise nature of human observation , and the slow speed of annotating behavioral data . Here , we developed an ... | How do animals control their behavior ? Scientists have been trying to answer this question for over 2 , 000 years , and many studies have analysed specific behaviors in different animals . However , most of these studies have traditionally relied on human observers to recognise and classify different behaviors such as... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2018 | Comprehensive machine learning analysis of Hydra behavior reveals a stable basal behavioral repertoire |
Future therapeutic use of engineered site-directed nucleases , like zinc-finger nucleases ( ZFNs ) and transcription activator-like effector nucleases ( TALENs ) , relies on safe and effective means of delivering nucleases to cells . In this study , we adapt lentiviral vectors as carriers of designer nuclease proteins ... | Altering the genetic code of a living organism to produce certain desirable outcomes is the goal of genetic engineering . The field builds on a long history of human attempts to alter genetics , from selective breeding of crops and livestock to genetically modified organisms and gene therapies . Researchers routinely u... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"chromosomes",
"and",
"gene",
"expression"
] | 2014 | Targeted genome editing by lentiviral protein transduction of zinc-finger and TAL-effector nucleases |
Membrane proteins with multiple transmembrane domains play critical roles in cell physiology , but little is known about the machinery coordinating their biogenesis at the endoplasmic reticulum . Here we describe a ~ 360 kDa ribosome-associated complex comprising the core Sec61 channel and five accessory factors: TMCO1... | Cell membranes are structures that separate the interior of the cell from its environment and determine the cell’s shape and the structure of its internal compartments . Nearly 25% of human genes encode transmembrane proteins that span the entire membrane from one side to the other , helping the membrane perform its ro... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology",
"cell",
"biology"
] | 2020 | An ER translocon for multi-pass membrane protein biogenesis |
Perinatal brain injuries , including hippocampal lesions , cause lasting changes in dopamine function in rodents , but it is not known if this occurs in humans . We compared adults who were born very preterm with perinatal brain injury to those born very preterm without perinatal brain injury , and age-matched controls... | Thirteen million infants are born too early every year . Improved care allows many to survive , but these “preterm infants” still face an increased risk of death and many other complications . Infants born very early , before 32 weeks , are at risk of brain injury because the brain is normally still developing in the l... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2017 | The effect of perinatal brain injury on dopaminergic function and hippocampal volume in adult life |
Myosins play essential roles in the development and function of auditory organs and multiple myosin genes are associated with hereditary forms of deafness . Using a forward genetic screen in Drosophila , we identified an E3 ligase , Ubr3 , as an essential gene for auditory organ development . Ubr3 negatively regulates ... | Over half of the world’s population has hearing loss by the age of 65 , and inherited forms of deafness are responsible for many of the hearing impairments in newborn children . Because the auditory organs that enable insects and mammals to hear work in similar ways , we have learnt a lot about genetic forms of deafnes... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"developmental",
"biology",
"cell",
"biology"
] | 2016 | The E3 ligase Ubr3 regulates Usher syndrome and MYH9 disorder proteins in the auditory organs of Drosophila and mammals |
Although aging-regulating pathways were discovered a few decades ago , it is not entirely clear how their activities are orchestrated , to govern lifespan and proteostasis at the organismal level . Here , we utilized the nematode Caenorhabditis elegans to examine whether the alteration of aging , by reducing the activi... | Aging may seem inescapable , but there are many factors , from diet to genetic mutations , that can affect this process . In fact , scientists have started to uncover the mechanisms that control and influence this slow decline . For example , in the small worm Caenorhabditis elegans , removing the germs cells – which g... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology",
"neuroscience"
] | 2018 | The insulin/IGF signaling cascade modulates SUMOylation to regulate aging and proteostasis in Caenorhabditis elegans |
Cyanobacteria are photosynthetic bacteria with a unique CO2 concentrating mechanism ( CCM ) , enhancing carbon fixation . Understanding the CCM requires a systems level perspective of how molecular components work together to enhance CO2 fixation . We present a mathematical model of the cyanobacterial CCM , giving the ... | Cyanobacteria are microorganisms that live in water and , like plants , they capture energy from the sun to convert carbon dioxide into sugars and other useful compounds . This process—called photosynthesis—releases oxygen as a by-product . Cyanobacteria were crucial in making the atmosphere of the early Earth habitabl... | [
"Abstract",
"Introduction",
"Results",
"Discussion"
] | [
"ecology",
"cell",
"biology"
] | 2014 | Systems analysis of the CO2 concentrating mechanism in cyanobacteria |
Mutualisms can be promoted by pleiotropic win-win mutations which directly benefit self ( self-serving ) and partner ( partner-serving ) . Intuitively , partner-serving phenotype could be quantified as an individual’s benefit supply rate to partners . Here , we demonstrate the inadequacy of this thinking , and propose ... | Many organisms – including microbes – have mutually beneficially relationships . Often , the exchanged goods , such as nutrients , are costly to make . But what happens when individuals evolve to help themselves more ? Can they also evolve to be more helpful to others ? Hart , Pineda et al . studied a community of two ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"ecology",
"evolutionary",
"biology"
] | 2019 | Disentangling strictly self-serving mutations from win-win mutations in a mutualistic microbial community |
Lattices abound in nature—from the crystal structure of minerals to the honey-comb organization of ommatidia in the compound eye of insects . These arrangements provide solutions for optimal packings , efficient resource distribution , and cryptographic protocols . Do lattices also play a role in how the brain represen... | The brain of a mammal has to store vast amounts of information . The ability of animals to navigate through their environment , for example , depends on a map of the space around them being encoded in the electrical activity of a finite number of neurons . In 2014 the Nobel Prize in Physiology or Medicine was awarded t... | [
"Abstract",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"computational",
"and",
"systems",
"biology",
"neuroscience"
] | 2015 | Probable nature of higher-dimensional symmetries underlying mammalian grid-cell activity patterns |
Hsp90 is a conserved chaperone that facilitates protein homeostasis . Our crystal structure of the mitochondrial Hsp90 , TRAP1 , revealed an extension of the N-terminal β-strand previously shown to cross between protomers in the closed state . In this study , we address the regulatory function of this extension or ‘str... | Proteins—which are made of chains of molecules called amino acids—play many important roles in cells . Before a newly made protein can work properly , the amino acid chain has to be folded into the correct three-dimensional shape . Many proteins that have folded incorrectly are harmless , but some can disrupt the cell ... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology",
"structural",
"biology",
"and",
"molecular",
"biophysics"
] | 2014 | A novel N-terminal extension in mitochondrial TRAP1 serves as a thermal regulator of chaperone activity |
Hippocampal neurons encode spatial memories by firing at specific locations . As the animal traverses a spatial trajectory , individual locations along the trajectory activate these neurons in a unique firing sequence , which yields a memory code representing the trajectory . How this type of memory code is altered in ... | Patients with Alzheimer's disease often forget where they have been or who they have just met . This happens because the neurons in those areas of the brain where memories are processed are dying . Indeed , by the time Alzheimer's disease has been diagnosed , many of the neurons in these regions have already died . The... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2013 | Rigid firing sequences undermine spatial memory codes in a neurodegenerative mouse model |
The functions of the TAF subunits of mammalian TFIID in physiological processes remain poorly characterised . In this study , we describe a novel function of TAFs in directing genomic occupancy of a transcriptional activator . Using liver-specific inactivation in mice , we show that the TAF4 subunit of TFIID is require... | To decode the information contained within a gene , a number of processes need to occur . For example , the DNA sequence that makes up the gene needs to be copied to make a molecule of RNA , which is then translated to build the corresponding protein . The first steps in the manufacture of RNA involve a structure calle... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Conclusion",
"Materials",
"and",
"methods"
] | [
"chromosomes",
"and",
"gene",
"expression",
"biochemistry",
"and",
"chemical",
"biology"
] | 2014 | TAF4, a subunit of transcription factor II D, directs promoter occupancy of nuclear receptor HNF4A during post-natal hepatocyte differentiation |
Copulation is the goal of the courtship process , crucial to reproductive success and evolutionary fitness . Identifying the circuitry underlying copulation is a necessary step towards understanding universal principles of circuit operation , and how circuit elements are recruited into the production of ordered action ... | Idioms and love songs often euphemistically refer to “the birds and the bees” . Yet for neurobiologists interested in uncovering basic facts about sex and reproduction , the fruit fly has proven much more informative . Male fruit flies court females with a series of “hard-wired” or genetically programmed behaviors . On... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2016 | Neural circuitry coordinating male copulation |
Many microbial populations rapidly adapt to changing environments with multiple variants competing for survival . To quantify such complex evolutionary dynamics in vivo , time resolved and genome wide data including rare variants are essential . We performed whole-genome deep sequencing of HIV-1 populations in 9 untrea... | HIV was transmitted from apes to humans multiple times before the virus began to spread among humans some time in the early 20th century . The virus is now found around the globe and has evolved into several different subtypes . Also , HIV continues to evolve inside each infected individual so that different variations... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"microbiology",
"and",
"infectious",
"disease",
"genetics",
"and",
"genomics"
] | 2015 | Population genomics of intrapatient HIV-1 evolution |
The RNA-binding proteins PTBP1 and PTBP2 control programs of alternative splicing during neuronal development . PTBP2 was found to maintain embryonic splicing patterns of many synaptic and cytoskeletal proteins during differentiation of neuronal progenitor cells ( NPCs ) into early neurons . However , the role of the e... | The neurons that transmit information around the nervous system develop in several stages . Embryonic stem cells specialize to form neuronal progenitor cells , which then develop into neurons . These cell types have different characteristics , in part because they make different proteins or different versions of the sa... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"chromosomes",
"and",
"gene",
"expression",
"developmental",
"biology"
] | 2015 | The splicing regulator PTBP1 controls the activity of the transcription factor Pbx1 during neuronal differentiation |
Intraflagellar transport ( IFT ) is a highly conserved mechanism for motor-driven transport of cargo within cilia , but how this cargo is selectively transported to cilia is unclear . WDR35/IFT121 is a component of the IFT-A complex best known for its role in ciliary retrograde transport . In the absence of WDR35 , sma... | Most human cells have at least one small hair-like structure on their surface called a cilium . These structures can act as antennae and allow the cell to sense signals from the rest of the body . To do this , they contain proteins that differ from the rest of the cell . The content of cilia depends on regulated delive... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"cell",
"biology"
] | 2021 | A WDR35-dependent coat protein complex transports ciliary membrane cargo vesicles to cilia |
TRPV1 channels support the detection of noxious and nociceptive input . Currently available functional and structural data suggest that TRPV1 channels have two gates within their permeation pathway: one formed by a ′bundle-crossing′ at the intracellular entrance and a second constriction at the selectivity filter . To ... | Cells use proteins on their surface as sensors to help them to assess and explore their environments and adapt to external conditions . The transient receptor potential ( TRP ) ion channels form one such family of proteins . Sodium , potassium and calcium ions can move through TRP channels to enter and exit cells , and... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"structural",
"biology",
"and",
"molecular",
"biophysics",
"computational",
"and",
"systems",
"biology"
] | 2017 | Conformational dynamics in TRPV1 channels reported by an encoded coumarin amino acid |
In systemic light chain amyloidosis , an overexpressed antibody light chain ( LC ) forms fibrils which deposit in organs and cause their failure . While it is well-established that mutations in the LC’s VL domain are important prerequisites , the mechanisms which render a patient LC amyloidogenic are ill-defined . In t... | Amyloid light chain amyloidosis , shortened to AL amyloidosis , is a rare and often fatal disease . It is caused by a disorder of the bone marrow . Usually , cells in the bone marrow produce Y-shaped proteins called antibodies to fight infections . In AL amyloidosis , these cells release too much of the short arm of th... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"biochemistry",
"and",
"chemical",
"biology"
] | 2020 | Fatal amyloid formation in a patient’s antibody light chain is caused by a single point mutation |
Axonal branching allows a neuron to connect to several targets , increasing neuronal circuit complexity . While axonal branching is well described , the mechanisms that control it remain largely unknown . We find that in the Drosophila CNS branches develop through a process of excessive growth followed by pruning . In ... | In the human brain , 100 billion neurons form 100 trillion connections . Each neuron consists of a cell body with numerous small branch-like projections known as dendrites ( from the Greek word for ‘tree’ ) , plus a long cable-like structure called the axon . Neurons receive electrical inputs from neighboring cells via... | [
"Abstract",
"Introduction",
"Results",
"Discussion",
"Materials",
"and",
"methods"
] | [
"neuroscience"
] | 2014 | Regulation of branching dynamics by axon-intrinsic asymmetries in Tyrosine Kinase Receptor signaling |
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