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Erotemic/utool | utool/_internal/win32_send_keys.py | KeyAction.key_description | def key_description(self):
"Return a description of the key"
vk, scan, flags = self._get_key_info()
desc = ''
if vk:
if vk in CODE_NAMES:
desc = CODE_NAMES[vk]
else:
desc = "VK %d"% vk
else:
desc = "%s"% self.key... | python | def key_description(self):
"Return a description of the key"
vk, scan, flags = self._get_key_info()
desc = ''
if vk:
if vk in CODE_NAMES:
desc = CODE_NAMES[vk]
else:
desc = "VK %d"% vk
else:
desc = "%s"% self.key... | [
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Erotemic/utool | utool/_internal/win32_send_keys.py | VirtualKeyAction._get_key_info | def _get_key_info(self):
"Virtual keys have extended flag set"
# copied more or less verbatim from
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if (
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flags = KEYEVE... | python | def _get_key_info(self):
"Virtual keys have extended flag set"
# copied more or less verbatim from
# http://www.pinvoke.net/default.aspx/user32.sendinput
if (
(self.key >= 33 and self.key <= 46) or
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Erotemic/utool | utool/_internal/win32_send_keys.py | EscapedKeyAction._get_key_info | def _get_key_info(self):
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vkey_scan = LoByte(VkKeyScan(self.key))
return (vkey_scan, MapVirtualKey(vkey_scan, 0), 0) | python | def _get_key_info(self):
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vkey_scan = LoByte(VkKeyScan(self.key))
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ThreatResponse/aws_ir_plugins | aws_ir_plugins/revokests_key.py | Plugin.setup | def setup(self):
"""Method runs the plugin attaching policies to the user in question"""
self.template = self._generate_inline_policy()
if self.dry_run is not True:
self.client = self._get_client()
username = self._get_username_for_key()
policy_document = self... | python | def setup(self):
"""Method runs the plugin attaching policies to the user in question"""
self.template = self._generate_inline_policy()
if self.dry_run is not True:
self.client = self._get_client()
username = self._get_username_for_key()
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ThreatResponse/aws_ir_plugins | aws_ir_plugins/revokests_key.py | Plugin._get_policies | def _get_policies(self):
"""Returns all the policy names for a given user"""
username = self._get_username_for_key()
policies = self.client.list_user_policies(
UserName=username
)
return policies | python | def _get_policies(self):
"""Returns all the policy names for a given user"""
username = self._get_username_for_key()
policies = self.client.list_user_policies(
UserName=username
)
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ThreatResponse/aws_ir_plugins | aws_ir_plugins/revokests_key.py | Plugin._get_username_for_key | def _get_username_for_key(self):
"""Find the user for a given access key"""
response = self.client.get_access_key_last_used(
AccessKeyId=self.compromised_resource['access_key_id']
)
username = response['UserName']
return username | python | def _get_username_for_key(self):
"""Find the user for a given access key"""
response = self.client.get_access_key_last_used(
AccessKeyId=self.compromised_resource['access_key_id']
)
username = response['UserName']
return username | [
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ThreatResponse/aws_ir_plugins | aws_ir_plugins/revokests_key.py | Plugin._generate_inline_policy | def _generate_inline_policy(self):
"""Renders a policy from a jinja template"""
template_name = self._locate_file('deny-sts-before-time.json.j2')
template_file = open(template_name)
template_contents = template_file.read()
template_file.close()
jinja_template = Template(t... | python | def _generate_inline_policy(self):
"""Renders a policy from a jinja template"""
template_name = self._locate_file('deny-sts-before-time.json.j2')
template_file = open(template_name)
template_contents = template_file.read()
template_file.close()
jinja_template = Template(t... | [
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ThreatResponse/aws_ir_plugins | aws_ir_plugins/revokests_key.py | Plugin._attach_inline_policy | def _attach_inline_policy(self, username, policy_document):
"""Attaches the policy to the user"""
response = self.client.put_user_policy(
UserName=username,
PolicyName="threatresponse-temporal-key-revocation",
PolicyDocument=policy_document
)
logger.in... | python | def _attach_inline_policy(self, username, policy_document):
"""Attaches the policy to the user"""
response = self.client.put_user_policy(
UserName=username,
PolicyName="threatresponse-temporal-key-revocation",
PolicyDocument=policy_document
)
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ThreatResponse/aws_ir_plugins | aws_ir_plugins/revokests_key.py | Plugin._locate_file | def _locate_file(self, pattern, root=os.path.dirname('revokests_key.py')):
"""Locate all files matching supplied filename pattern in and below
supplied root directory.
"""
for path, dirs, files in os.walk(os.path.abspath(root)):
for filename in fnmatch.filter(files, pattern... | python | def _locate_file(self, pattern, root=os.path.dirname('revokests_key.py')):
"""Locate all files matching supplied filename pattern in and below
supplied root directory.
"""
for path, dirs, files in os.walk(os.path.abspath(root)):
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glormph/msstitch | src/app/readers/tsv.py | generate_tsv_pep_protein_quants | def generate_tsv_pep_protein_quants(fns):
"""Unlike generate_tsv_lines_multifile, this generates tsv lines
from multiple files that may have different headers. Yields
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for fn in fns:
header = get_tsv_header(fn)
for pquant in gener... | python | def generate_tsv_pep_protein_quants(fns):
"""Unlike generate_tsv_lines_multifile, this generates tsv lines
from multiple files that may have different headers. Yields
fn, header as well as quant data for each protein quant"""
for fn in fns:
header = get_tsv_header(fn)
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glormph/msstitch | src/app/readers/tsv.py | mzmlfn_kronikfeature_generator | def mzmlfn_kronikfeature_generator(mzmlfns, kronikfns):
"""Generates tuples of spectra filename and corresponding output
features from kronik"""
for mzmlfn, kronikfn in zip(mzmlfns, kronikfns):
for quant_el in generate_kronik_feats(kronikfn):
yield os.path.basename(mzmlfn), quant_el | python | def mzmlfn_kronikfeature_generator(mzmlfns, kronikfns):
"""Generates tuples of spectra filename and corresponding output
features from kronik"""
for mzmlfn, kronikfn in zip(mzmlfns, kronikfns):
for quant_el in generate_kronik_feats(kronikfn):
yield os.path.basename(mzmlfn), quant_el | [
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glormph/msstitch | src/app/readers/tsv.py | generate_split_tsv_lines | def generate_split_tsv_lines(fn, header):
"""Returns dicts with header-keys and psm statistic values"""
for line in generate_tsv_psms_line(fn):
yield {x: y for (x, y) in zip(header, line.strip().split('\t'))} | python | def generate_split_tsv_lines(fn, header):
"""Returns dicts with header-keys and psm statistic values"""
for line in generate_tsv_psms_line(fn):
yield {x: y for (x, y) in zip(header, line.strip().split('\t'))} | [
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glormph/msstitch | src/app/readers/tsv.py | get_proteins_from_psm | def get_proteins_from_psm(line):
"""From a line, return list of proteins reported by Mzid2TSV. When unrolled
lines are given, this returns the single protein from the line."""
proteins = line[mzidtsvdata.HEADER_PROTEIN].split(';')
outproteins = []
for protein in proteins:
prepost_protein = r... | python | def get_proteins_from_psm(line):
"""From a line, return list of proteins reported by Mzid2TSV. When unrolled
lines are given, this returns the single protein from the line."""
proteins = line[mzidtsvdata.HEADER_PROTEIN].split(';')
outproteins = []
for protein in proteins:
prepost_protein = r... | [
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Erotemic/utool | utool/util_arg.py | aug_sysargv | def aug_sysargv(cmdstr):
""" DEBUG FUNC modify argv to look like you ran a command """
import shlex
argv = shlex.split(cmdstr)
sys.argv.extend(argv) | python | def aug_sysargv(cmdstr):
""" DEBUG FUNC modify argv to look like you ran a command """
import shlex
argv = shlex.split(cmdstr)
sys.argv.extend(argv) | [
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Erotemic/utool | utool/util_arg.py | get_module_verbosity_flags | def get_module_verbosity_flags(*labels):
""" checks for standard flags for enableing module specific verbosity """
verbose_prefix_list = ['--verbose-', '--verb', '--verb-']
veryverbose_prefix_list = ['--veryverbose-', '--veryverb', '--veryverb-']
verbose_flags = tuple(
[prefix + lbl for prefix, ... | python | def get_module_verbosity_flags(*labels):
""" checks for standard flags for enableing module specific verbosity """
verbose_prefix_list = ['--verbose-', '--verb', '--verb-']
veryverbose_prefix_list = ['--veryverbose-', '--veryverb', '--veryverb-']
verbose_flags = tuple(
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] | 3b27e1f4e6e6fb23cd8744af7b7195b57d99e03a | https://github.com/Erotemic/utool/blob/3b27e1f4e6e6fb23cd8744af7b7195b57d99e03a/utool/util_arg.py#L48-L62 | train |
Erotemic/utool | utool/util_arg.py | get_argflag | def get_argflag(argstr_, default=False, help_='', return_specified=None,
need_prefix=True, return_was_specified=False, argv=None,
debug=None,
**kwargs):
"""
Checks if the commandline has a flag or a corresponding noflag
Args:
argstr_ (str, list, or tu... | python | def get_argflag(argstr_, default=False, help_='', return_specified=None,
need_prefix=True, return_was_specified=False, argv=None,
debug=None,
**kwargs):
"""
Checks if the commandline has a flag or a corresponding noflag
Args:
argstr_ (str, list, or tu... | [
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Erotemic/utool | utool/util_arg.py | get_arg_dict | def get_arg_dict(argv=None, prefix_list=['--'], type_hints={}):
r"""
Yet another way for parsing args
CommandLine:
python -m utool.util_arg --exec-get_arg_dict
python -m utool.util_arg --test-get_arg_dict
Example:
>>> # ENABLE_DOCTEST
>>> from utool.util_arg import * #... | python | def get_arg_dict(argv=None, prefix_list=['--'], type_hints={}):
r"""
Yet another way for parsing args
CommandLine:
python -m utool.util_arg --exec-get_arg_dict
python -m utool.util_arg --test-get_arg_dict
Example:
>>> # ENABLE_DOCTEST
>>> from utool.util_arg import * #... | [
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python -m utool.util_arg --test-get_arg_dict
Example:
>>> # ENABLE_DOCTEST
>>> from utool.util_arg import * # NOQA
>>> import utool as ut
>>> import shlex
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Erotemic/utool | utool/util_arg.py | argv_flag_dec | def argv_flag_dec(*argin, **kwargs):
"""
Decorators which control program flow based on sys.argv
the decorated function does not execute without its corresponding
flag
Kwargs:
default, quiet, indent, default
ReturnKwargs:
alias_flags
"""
kwargs = kwargs.copy()
kwarg... | python | def argv_flag_dec(*argin, **kwargs):
"""
Decorators which control program flow based on sys.argv
the decorated function does not execute without its corresponding
flag
Kwargs:
default, quiet, indent, default
ReturnKwargs:
alias_flags
"""
kwargs = kwargs.copy()
kwarg... | [
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Erotemic/utool | utool/util_arg.py | __argv_flag_dec | def __argv_flag_dec(func, default=False, quiet=QUIET, indent=False):
"""
Logic for controlling if a function gets called based on command line
"""
from utool import util_decor
flagname = meta_util_six.get_funcname(func)
if flagname.find('no') == 0:
flagname = flagname[2:]
flags = (
... | python | def __argv_flag_dec(func, default=False, quiet=QUIET, indent=False):
"""
Logic for controlling if a function gets called based on command line
"""
from utool import util_decor
flagname = meta_util_six.get_funcname(func)
if flagname.find('no') == 0:
flagname = flagname[2:]
flags = (
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Erotemic/utool | utool/util_arg.py | get_argv_tail | def get_argv_tail(scriptname, prefer_main=None, argv=None):
r"""
gets the rest of the arguments after a script has been invoked hack.
accounts for python -m scripts.
Args:
scriptname (str):
CommandLine:
python -m utool.util_arg --test-get_argv_tail
Example:
>>> # ENABL... | python | def get_argv_tail(scriptname, prefer_main=None, argv=None):
r"""
gets the rest of the arguments after a script has been invoked hack.
accounts for python -m scripts.
Args:
scriptname (str):
CommandLine:
python -m utool.util_arg --test-get_argv_tail
Example:
>>> # ENABL... | [
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gets the rest of the arguments after a script has been invoked hack.
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CommandLine:
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>>> # ENABLE_DOCTEST
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Erotemic/utool | utool/util_arg.py | get_cmdline_varargs | def get_cmdline_varargs(argv=None):
"""
Returns positional args specified directly after the scriptname
and before any args starting with '-' on the commandline.
"""
if argv is None:
argv = sys.argv
scriptname = argv[0]
if scriptname == '':
# python invoked by iteself
... | python | def get_cmdline_varargs(argv=None):
"""
Returns positional args specified directly after the scriptname
and before any args starting with '-' on the commandline.
"""
if argv is None:
argv = sys.argv
scriptname = argv[0]
if scriptname == '':
# python invoked by iteself
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Erotemic/utool | utool/util_arg.py | argval | def argval(key, default=None, type=None, smartcast=True, return_exists=False,
argv=None):
"""
alias for get_argval
Example:
>>> # ENABLE_DOCTEST
>>> import utool as ut
>>> import sys
>>> argv = ['--aids=[1,2,3]']
>>> value = ut.argval('--aids', default=[1,... | python | def argval(key, default=None, type=None, smartcast=True, return_exists=False,
argv=None):
"""
alias for get_argval
Example:
>>> # ENABLE_DOCTEST
>>> import utool as ut
>>> import sys
>>> argv = ['--aids=[1,2,3]']
>>> value = ut.argval('--aids', default=[1,... | [
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>>> import sys
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>>> value = ut.argval('--aids', default=[1, 2], argv=argv)
>>> assert isinstance(value, list)
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YuriyGuts/pygoose | pygoose/kg/eda.py | plot_real_feature | def plot_real_feature(df, feature_name, bins=50, figsize=(15, 15)):
"""
Plot the distribution of a real-valued feature conditioned by the target.
Examples:
`plot_real_feature(X, 'emb_mean_euclidean')`
Args:
df: Pandas dataframe containing the target column (named 'target').
fea... | python | def plot_real_feature(df, feature_name, bins=50, figsize=(15, 15)):
"""
Plot the distribution of a real-valued feature conditioned by the target.
Examples:
`plot_real_feature(X, 'emb_mean_euclidean')`
Args:
df: Pandas dataframe containing the target column (named 'target').
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YuriyGuts/pygoose | pygoose/kg/eda.py | plot_pair | def plot_pair(df, feature_name_1, feature_name_2, kind='scatter', alpha=0.01, **kwargs):
"""
Plot a scatterplot of two features against one another,
and calculate Pearson correlation coefficient.
Examples:
`plot_pair(X, 'emb_mean_euclidean', 'emb_mean_cosine')`
Args:
df:
fe... | python | def plot_pair(df, feature_name_1, feature_name_2, kind='scatter', alpha=0.01, **kwargs):
"""
Plot a scatterplot of two features against one another,
and calculate Pearson correlation coefficient.
Examples:
`plot_pair(X, 'emb_mean_euclidean', 'emb_mean_cosine')`
Args:
df:
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YuriyGuts/pygoose | pygoose/kg/eda.py | plot_feature_correlation_heatmap | def plot_feature_correlation_heatmap(df, features, font_size=9, figsize=(15, 15), save_filename=None):
"""
Plot a correlation heatmap between every feature pair.
Args:
df: Pandas dataframe containing the target column (named 'target').
features: The list of features to include in the correl... | python | def plot_feature_correlation_heatmap(df, features, font_size=9, figsize=(15, 15), save_filename=None):
"""
Plot a correlation heatmap between every feature pair.
Args:
df: Pandas dataframe containing the target column (named 'target').
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YuriyGuts/pygoose | pygoose/kg/eda.py | scatterplot_matrix | def scatterplot_matrix(df, features, downsample_frac=None, figsize=(15, 15)):
"""
Plot a scatterplot matrix for a list of features, colored by target value.
Example: `scatterplot_matrix(X, X.columns.tolist(), downsample_frac=0.01)`
Args:
df: Pandas dataframe containing the target column (named... | python | def scatterplot_matrix(df, features, downsample_frac=None, figsize=(15, 15)):
"""
Plot a scatterplot matrix for a list of features, colored by target value.
Example: `scatterplot_matrix(X, X.columns.tolist(), downsample_frac=0.01)`
Args:
df: Pandas dataframe containing the target column (named... | [
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LEMS/pylems | lems/parser/LEMS.py | LEMSFileParser.process_nested_tags | def process_nested_tags(self, node, tag = ''):
"""
Process child tags.
@param node: Current node being parsed.
@type node: xml.etree.Element
@raise ParseError: Raised when an unexpected nested tag is found.
"""
##print("---------Processing: %s, %s"%(node.tag,tag... | python | def process_nested_tags(self, node, tag = ''):
"""
Process child tags.
@param node: Current node being parsed.
@type node: xml.etree.Element
@raise ParseError: Raised when an unexpected nested tag is found.
"""
##print("---------Processing: %s, %s"%(node.tag,tag... | [
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LEMS/pylems | lems/parser/LEMS.py | LEMSFileParser.parse | def parse(self, xmltext):
"""
Parse a string containing LEMS XML text.
@param xmltext: String containing LEMS XML formatted text.
@type xmltext: str
"""
xml = LEMSXMLNode(xe.XML(xmltext))
if xml.ltag != 'lems' and xml.ltag != 'neuroml':
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"""
Parse a string containing LEMS XML text.
@param xmltext: String containing LEMS XML formatted text.
@type xmltext: str
"""
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LEMS/pylems | lems/parser/LEMS.py | LEMSFileParser.raise_error | def raise_error(self, message, *params, **key_params):
"""
Raise a parse error.
"""
s = 'Parser error in '
self.xml_node_stack.reverse()
if len(self.xml_node_stack) > 1:
node = self.xml_node_stack[0]
s += '<{0}'.format(node.tag)
... | python | def raise_error(self, message, *params, **key_params):
"""
Raise a parse error.
"""
s = 'Parser error in '
self.xml_node_stack.reverse()
if len(self.xml_node_stack) > 1:
node = self.xml_node_stack[0]
s += '<{0}'.format(node.tag)
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LEMS/pylems | lems/parser/LEMS.py | LEMSFileParser.parse_component_by_typename | def parse_component_by_typename(self, node, type_):
"""
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@param node: Node containing the <Component> element
@type node: xml.etree.Element
@param type_: Type of this component.
@type type_: string
@raise Par... | python | def parse_component_by_typename(self, node, type_):
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Parses components defined directly by component name.
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@type node: xml.etree.Element
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glormph/msstitch | src/app/readers/xml.py | generate_tags_multiple_files | def generate_tags_multiple_files(input_files, tag, ignore_tags, ns=None):
"""
Calls xmltag generator for multiple files.
"""
return itertools.chain.from_iterable([generate_xmltags(
fn, tag, ignore_tags, ns) for fn in input_files]) | python | def generate_tags_multiple_files(input_files, tag, ignore_tags, ns=None):
"""
Calls xmltag generator for multiple files.
"""
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glormph/msstitch | src/app/readers/xml.py | generate_tags_multiple_files_strings | def generate_tags_multiple_files_strings(input_files, ns, tag, ignore_tags):
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glormph/msstitch | src/app/readers/xml.py | generate_xmltags | def generate_xmltags(fn, returntag, ignore_tags, ns=None):
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ignore_tags are the ones that are cleared when met by parser.
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"""
Base generator for percolator xml psm, peptide, protein output,
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LEMS/pylems | lems/model/model.py | Model.add_component_type | def add_component_type(self, component_type):
"""
Adds a component type to the model.
@param component_type: Component type to be added.
@type component_type: lems.model.fundamental.ComponentType
"""
name = component_type.name
# To handle colons in names... | python | def add_component_type(self, component_type):
"""
Adds a component type to the model.
@param component_type: Component type to be added.
@type component_type: lems.model.fundamental.ComponentType
"""
name = component_type.name
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LEMS/pylems | lems/model/model.py | Model.add | def add(self, child):
"""
Adds a typed child object to the model.
@param child: Child object to be added.
"""
if isinstance(child, Include):
self.add_include(child)
elif isinstance(child, Dimension):
self.add_dimension(child)
elif isinsta... | python | def add(self, child):
"""
Adds a typed child object to the model.
@param child: Child object to be added.
"""
if isinstance(child, Include):
self.add_include(child)
elif isinstance(child, Dimension):
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LEMS/pylems | lems/model/model.py | Model.include_file | def include_file(self, path, include_dirs = []):
"""
Includes a file into the current model.
@param path: Path to the file to be included.
@type path: str
@param include_dirs: Optional alternate include search path.
@type include_dirs: list(str)
"""
if s... | python | def include_file(self, path, include_dirs = []):
"""
Includes a file into the current model.
@param path: Path to the file to be included.
@type path: str
@param include_dirs: Optional alternate include search path.
@type include_dirs: list(str)
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LEMS/pylems | lems/model/model.py | Model.import_from_file | def import_from_file(self, filepath):
"""
Import a model from a file.
@param filepath: File to be imported.
@type filepath: str
"""
inc_dirs = self.include_directories[:]
inc_dirs.append(dirname(filepath))
parser = LEMSFi... | python | def import_from_file(self, filepath):
"""
Import a model from a file.
@param filepath: File to be imported.
@type filepath: str
"""
inc_dirs = self.include_directories[:]
inc_dirs.append(dirname(filepath))
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LEMS/pylems | lems/model/model.py | Model.export_to_dom | def export_to_dom(self):
"""
Exports this model to a DOM.
"""
namespaces = 'xmlns="http://www.neuroml.org/lems/%s" ' + \
'xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" ' + \
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... | python | def export_to_dom(self):
"""
Exports this model to a DOM.
"""
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LEMS/pylems | lems/model/model.py | Model.export_to_file | def export_to_file(self, filepath, level_prefix = ' '):
"""
Exports this model to a file.
@param filepath: File to be exported to.
@type filepath: str
"""
xmldom = self.export_to_dom()
xmlstr = xmldom.toprettyxml(level_prefix, '\n',)
f = open(filepath,... | python | def export_to_file(self, filepath, level_prefix = ' '):
"""
Exports this model to a file.
@param filepath: File to be exported to.
@type filepath: str
"""
xmldom = self.export_to_dom()
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LEMS/pylems | lems/model/model.py | Model.resolve | def resolve(self):
"""
Resolves references in this model.
"""
model = self.copy()
for ct in model.component_types:
model.resolve_component_type(ct)
for c in model.components:
if c.id not in model.fat_components:
model.add... | python | def resolve(self):
"""
Resolves references in this model.
"""
model = self.copy()
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LEMS/pylems | lems/model/model.py | Model.resolve_component_type | def resolve_component_type(self, component_type):
"""
Resolves references in the specified component type.
@param component_type: Component type to be resolved.
@type component_type: lems.model.component.ComponentType
"""
# Resolve component type from base types... | python | def resolve_component_type(self, component_type):
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Resolves references in the specified component type.
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LEMS/pylems | lems/model/model.py | Model.merge_component_types | def merge_component_types(self, ct, base_ct):
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@param ct: Component type to be resolved.
@type ct: lems.model.component.ComponentType
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LEMS/pylems | lems/model/model.py | Model.resolve_simulation | def resolve_simulation(self, fc, ct):
"""
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"""
Resolve simulation specifications.
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LEMS/pylems | lems/model/model.py | Model.get_numeric_value | def get_numeric_value(self, value_str, dimension = None):
"""
Get the numeric value for a parameter value specification.
@param value_str: Value string
@type value_str: str
@param dimension: Dimension of the value
@type dimension: str
"""
n = None
... | python | def get_numeric_value(self, value_str, dimension = None):
"""
Get the numeric value for a parameter value specification.
@param value_str: Value string
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glormph/msstitch | src/app/drivers/startup.py | start_msstitch | def start_msstitch(exec_drivers, sysargs):
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TriOptima/tri.struct | lib/tri/struct/__init__.py | merged | def merged(*dicts, **kwargs):
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LEMS/pylems | lems/sim/build.py | order_derived_parameters | def order_derived_parameters(component):
"""
Finds ordering of derived_parameters.
@param component: Component containing derived parameters.
@type component: lems.model.component.Component
@return: Returns ordered list of derived parameters.
@rtype: list(string)
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"""
Finds ordering of derived_parameters.
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@type component: lems.model.component.Component
@return: Returns ordered list of derived parameters.
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LEMS/pylems | lems/sim/build.py | order_derived_variables | def order_derived_variables(regime):
"""
Finds ordering of derived_variables.
@param regime: Dynamics Regime containing derived variables.
@type regime: lems.model.dynamics.regime
@return: Returns ordered list of derived variables.
@rtype: list(string)
@raise SimBuildError: Raised when a ... | python | def order_derived_variables(regime):
"""
Finds ordering of derived_variables.
@param regime: Dynamics Regime containing derived variables.
@type regime: lems.model.dynamics.regime
@return: Returns ordered list of derived variables.
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LEMS/pylems | lems/sim/build.py | SimulationBuilder.build | def build(self):
"""
Build the simulation components from the model.
@return: A runnable simulation object
@rtype: lems.sim.sim.Simulation
"""
self.sim = Simulation()
for component_id in self.model.targets:
if component_id not in self.model.componen... | python | def build(self):
"""
Build the simulation components from the model.
@return: A runnable simulation object
@rtype: lems.sim.sim.Simulation
"""
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LEMS/pylems | lems/sim/build.py | SimulationBuilder.build_event_connections | def build_event_connections(self, component, runnable, structure):
"""
Adds event connections to a runnable component based on the structure
specifications in the component model.
@param component: Component model containing structure specifications.
@type component: lems.model.... | python | def build_event_connections(self, component, runnable, structure):
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Adds event connections to a runnable component based on the structure
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LEMS/pylems | lems/sim/build.py | SimulationBuilder.build_structure | def build_structure(self, component, runnable, structure):
"""
Adds structure to a runnable component based on the structure
specifications in the component model.
@param component: Component model containing structure specifications.
@type component: lems.model.component.FatCom... | python | def build_structure(self, component, runnable, structure):
"""
Adds structure to a runnable component based on the structure
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LEMS/pylems | lems/sim/build.py | SimulationBuilder.build_foreach | def build_foreach(self, component, runnable, foreach, name_mappings = {}):
"""
Iterate over ForEach constructs and process nested elements.
@param component: Component model containing structure specifications.
@type component: lems.model.component.FatComponent
@param runnable:... | python | def build_foreach(self, component, runnable, foreach, name_mappings = {}):
"""
Iterate over ForEach constructs and process nested elements.
@param component: Component model containing structure specifications.
@type component: lems.model.component.FatComponent
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LEMS/pylems | lems/sim/build.py | SimulationBuilder.process_simulation_specs | def process_simulation_specs(self, component, runnable, simulation):
"""
Process simulation-related aspects to a runnable component based on the
dynamics specifications in the component model.
@param component: Component model containing dynamics specifications.
@type component:... | python | def process_simulation_specs(self, component, runnable, simulation):
"""
Process simulation-related aspects to a runnable component based on the
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LEMS/pylems | lems/sim/build.py | SimulationBuilder.build_expression_from_tree | def build_expression_from_tree(self, runnable, regime, tree_node):
"""
Recursively builds a Python expression from a parsed expression tree.
@param runnable: Runnable object to which this expression would be added.
@type runnable: lems.sim.runnable.Runnable
@param regime: Dynam... | python | def build_expression_from_tree(self, runnable, regime, tree_node):
"""
Recursively builds a Python expression from a parsed expression tree.
@param runnable: Runnable object to which this expression would be added.
@type runnable: lems.sim.runnable.Runnable
@param regime: Dynam... | [
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LEMS/pylems | lems/sim/build.py | SimulationBuilder.build_event_handler | def build_event_handler(self, runnable, regime, event_handler):
"""
Build event handler code.
@param event_handler: Event handler object
@type event_handler: lems.model.dynamics.EventHandler
@return: Generated event handler code.
@rtype: list(string)
"""
... | python | def build_event_handler(self, runnable, regime, event_handler):
"""
Build event handler code.
@param event_handler: Event handler object
@type event_handler: lems.model.dynamics.EventHandler
@return: Generated event handler code.
@rtype: list(string)
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LEMS/pylems | lems/sim/build.py | SimulationBuilder.build_on_condition | def build_on_condition(self, runnable, regime, on_condition):
"""
Build OnCondition event handler code.
@param on_condition: OnCondition event handler object
@type on_condition: lems.model.dynamics.OnCondition
@return: Generated OnCondition code
@rtype: list(string)
... | python | def build_on_condition(self, runnable, regime, on_condition):
"""
Build OnCondition event handler code.
@param on_condition: OnCondition event handler object
@type on_condition: lems.model.dynamics.OnCondition
@return: Generated OnCondition code
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LEMS/pylems | lems/sim/build.py | SimulationBuilder.build_on_event | def build_on_event(self, runnable, regime, on_event):
"""
Build OnEvent event handler code.
@param on_event: OnEvent event handler object
@type on_event: lems.model.dynamics.OnEvent
@return: Generated OnEvent code
@rtype: list(string)
"""
on_event_code =... | python | def build_on_event(self, runnable, regime, on_event):
"""
Build OnEvent event handler code.
@param on_event: OnEvent event handler object
@type on_event: lems.model.dynamics.OnEvent
@return: Generated OnEvent code
@rtype: list(string)
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LEMS/pylems | lems/sim/build.py | SimulationBuilder.build_on_start | def build_on_start(self, runnable, regime, on_start):
"""
Build OnStart start handler code.
@param on_start: OnStart start handler object
@type on_start: lems.model.dynamics.OnStart
@return: Generated OnStart code
@rtype: list(string)
"""
on_start_code ... | python | def build_on_start(self, runnable, regime, on_start):
"""
Build OnStart start handler code.
@param on_start: OnStart start handler object
@type on_start: lems.model.dynamics.OnStart
@return: Generated OnStart code
@rtype: list(string)
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LEMS/pylems | lems/sim/build.py | SimulationBuilder.build_on_entry | def build_on_entry(self, runnable, regime, on_entry):
"""
Build OnEntry start handler code.
@param on_entry: OnEntry start handler object
@type on_entry: lems.model.dynamics.OnEntry
@return: Generated OnEntry code
@rtype: list(string)
"""
on_entry_code ... | python | def build_on_entry(self, runnable, regime, on_entry):
"""
Build OnEntry start handler code.
@param on_entry: OnEntry start handler object
@type on_entry: lems.model.dynamics.OnEntry
@return: Generated OnEntry code
@rtype: list(string)
"""
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LEMS/pylems | lems/sim/build.py | SimulationBuilder.build_action | def build_action(self, runnable, regime, action):
"""
Build event handler action code.
@param action: Event handler action object
@type action: lems.model.dynamics.Action
@return: Generated action code
@rtype: string
"""
if isinstance(action, StateAssig... | python | def build_action(self, runnable, regime, action):
"""
Build event handler action code.
@param action: Event handler action object
@type action: lems.model.dynamics.Action
@return: Generated action code
@rtype: string
"""
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LEMS/pylems | lems/sim/build.py | SimulationBuilder.build_state_assignment | def build_state_assignment(self, runnable, regime, state_assignment):
"""
Build state assignment code.
@param state_assignment: State assignment object
@type state_assignment: lems.model.dynamics.StateAssignment
@return: Generated state assignment code
@rtype: string
... | python | def build_state_assignment(self, runnable, regime, state_assignment):
"""
Build state assignment code.
@param state_assignment: State assignment object
@type state_assignment: lems.model.dynamics.StateAssignment
@return: Generated state assignment code
@rtype: string
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LEMS/pylems | lems/sim/build.py | SimulationBuilder.build_event_out | def build_event_out(self, event_out):
"""
Build event out code.
@param event_out: event out object
@type event_out: lems.model.dynamics.EventOut
@return: Generated event out code
@rtype: string
"""
event_out_code = ['if "{0}" in self.event_out_callbacks... | python | def build_event_out(self, event_out):
"""
Build event out code.
@param event_out: event out object
@type event_out: lems.model.dynamics.EventOut
@return: Generated event out code
@rtype: string
"""
event_out_code = ['if "{0}" in self.event_out_callbacks... | [
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LEMS/pylems | lems/sim/build.py | SimulationBuilder.build_reduce_code | def build_reduce_code(self, result, select, reduce):
"""
Builds a reduce operation on the selected target range.
"""
select = select.replace('/', '.')
select = select.replace(' ', '')
if reduce == 'add':
reduce_op = '+'
acc_start = 0
else:... | python | def build_reduce_code(self, result, select, reduce):
"""
Builds a reduce operation on the selected target range.
"""
select = select.replace('/', '.')
select = select.replace(' ', '')
if reduce == 'add':
reduce_op = '+'
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LEMS/pylems | lems/sim/build.py | SimulationBuilder.add_recording_behavior | def add_recording_behavior(self, component, runnable):
"""
Adds recording-related dynamics to a runnable component based on
the dynamics specifications in the component model.
@param component: Component model containing dynamics specifications.
@type component: lems.model.compo... | python | def add_recording_behavior(self, component, runnable):
"""
Adds recording-related dynamics to a runnable component based on
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@param component: Component model containing dynamics specifications.
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Erotemic/utool | utool/util_inspect.py | check_static_member_vars | def check_static_member_vars(class_, fpath=None, only_init=True):
"""
class_ can either be live object or a classname
# fpath = ut.truepath('~/code/ibeis/ibeis/viz/viz_graph2.py')
# classname = 'AnnotGraphWidget'
"""
#import ast
#import astor
import utool as ut
if isinstance(class_... | python | def check_static_member_vars(class_, fpath=None, only_init=True):
"""
class_ can either be live object or a classname
# fpath = ut.truepath('~/code/ibeis/ibeis/viz/viz_graph2.py')
# classname = 'AnnotGraphWidget'
"""
#import ast
#import astor
import utool as ut
if isinstance(class_... | [
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Erotemic/utool | utool/util_inspect.py | get_funcnames_from_modpath | def get_funcnames_from_modpath(modpath, include_methods=True):
"""
Get all functions defined in module
"""
import utool as ut
if True:
import jedi
source = ut.read_from(modpath)
#script = jedi.Script(source=source, source_path=modpath, line=source.count('\n') + 1)
def... | python | def get_funcnames_from_modpath(modpath, include_methods=True):
"""
Get all functions defined in module
"""
import utool as ut
if True:
import jedi
source = ut.read_from(modpath)
#script = jedi.Script(source=source, source_path=modpath, line=source.count('\n') + 1)
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Erotemic/utool | utool/util_inspect.py | help_members | def help_members(obj, use_other=False):
r"""
Inspects members of a class
Args:
obj (class or module):
CommandLine:
python -m utool.util_inspect help_members
Example:
>>> # ENABLE_DOCTEST
>>> from utool.util_inspect import * # NOQA
>>> import utool as ut
... | python | def help_members(obj, use_other=False):
r"""
Inspects members of a class
Args:
obj (class or module):
CommandLine:
python -m utool.util_inspect help_members
Example:
>>> # ENABLE_DOCTEST
>>> from utool.util_inspect import * # NOQA
>>> import utool as ut
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Erotemic/utool | utool/util_inspect.py | is_defined_by_module | def is_defined_by_module(item, module, parent=None):
"""
Check if item is directly defined by a module.
This check may be prone to errors.
"""
flag = False
if isinstance(item, types.ModuleType):
if not hasattr(item, '__file__'):
try:
# hack for cv2 and xfeatur... | python | def is_defined_by_module(item, module, parent=None):
"""
Check if item is directly defined by a module.
This check may be prone to errors.
"""
flag = False
if isinstance(item, types.ModuleType):
if not hasattr(item, '__file__'):
try:
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Erotemic/utool | utool/util_inspect.py | is_bateries_included | def is_bateries_included(item):
"""
Returns if a value is a python builtin function
Args:
item (object):
Returns:
bool: flag
References:
http://stackoverflow.com/questions/23149218/check-if-a-python-function-is-builtin
CommandLine:
python -m utool._internal.me... | python | def is_bateries_included(item):
"""
Returns if a value is a python builtin function
Args:
item (object):
Returns:
bool: flag
References:
http://stackoverflow.com/questions/23149218/check-if-a-python-function-is-builtin
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Erotemic/utool | utool/util_inspect.py | dummy_func | def dummy_func(arg1, arg2, arg3=None, arg4=[1, 2, 3], arg5={}, **kwargs):
"""
test func for kwargs parseing
"""
foo = kwargs.get('foo', None)
bar = kwargs.pop('bar', 4)
foo2 = kwargs['foo2']
foobar = str(foo) + str(bar) + str(foo2)
return foobar | python | def dummy_func(arg1, arg2, arg3=None, arg4=[1, 2, 3], arg5={}, **kwargs):
"""
test func for kwargs parseing
"""
foo = kwargs.get('foo', None)
bar = kwargs.pop('bar', 4)
foo2 = kwargs['foo2']
foobar = str(foo) + str(bar) + str(foo2)
return foobar | [
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Erotemic/utool | utool/util_inspect.py | get_docstr | def get_docstr(func_or_class):
""" Get the docstring from a live object """
import utool as ut
try:
docstr_ = func_or_class.func_doc
except AttributeError:
docstr_ = func_or_class.__doc__
if docstr_ is None:
docstr_ = ''
docstr = ut.unindent(docstr_)
return docstr | python | def get_docstr(func_or_class):
""" Get the docstring from a live object """
import utool as ut
try:
docstr_ = func_or_class.func_doc
except AttributeError:
docstr_ = func_or_class.__doc__
if docstr_ is None:
docstr_ = ''
docstr = ut.unindent(docstr_)
return docstr | [
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Erotemic/utool | utool/util_inspect.py | find_funcs_called_with_kwargs | def find_funcs_called_with_kwargs(sourcecode, target_kwargs_name='kwargs'):
r"""
Finds functions that are called with the keyword `kwargs` variable
CommandLine:
python3 -m utool.util_inspect find_funcs_called_with_kwargs
Example:
>>> # ENABLE_DOCTEST
>>> import utool as ut
... | python | def find_funcs_called_with_kwargs(sourcecode, target_kwargs_name='kwargs'):
r"""
Finds functions that are called with the keyword `kwargs` variable
CommandLine:
python3 -m utool.util_inspect find_funcs_called_with_kwargs
Example:
>>> # ENABLE_DOCTEST
>>> import utool as ut
... | [
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>>> # ENABLE_DOCTEST
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Erotemic/utool | utool/util_inspect.py | get_func_argspec | def get_func_argspec(func):
"""
wrapper around inspect.getargspec but takes into account utool decorators
"""
if hasattr(func, '_utinfo'):
argspec = func._utinfo['orig_argspec']
return argspec
if isinstance(func, property):
func = func.fget
try:
argspec = inspect.... | python | def get_func_argspec(func):
"""
wrapper around inspect.getargspec but takes into account utool decorators
"""
if hasattr(func, '_utinfo'):
argspec = func._utinfo['orig_argspec']
return argspec
if isinstance(func, property):
func = func.fget
try:
argspec = inspect.... | [
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Erotemic/utool | utool/util_inspect.py | parse_func_kwarg_keys | def parse_func_kwarg_keys(func, with_vals=False):
""" hacky inference of kwargs keys
SeeAlso:
argparse_funckw
recursive_parse_kwargs
parse_kwarg_keys
parse_func_kwarg_keys
get_func_kwargs
"""
sourcecode = get_func_sourcecode(func, strip_docstr=True,
... | python | def parse_func_kwarg_keys(func, with_vals=False):
""" hacky inference of kwargs keys
SeeAlso:
argparse_funckw
recursive_parse_kwargs
parse_kwarg_keys
parse_func_kwarg_keys
get_func_kwargs
"""
sourcecode = get_func_sourcecode(func, strip_docstr=True,
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Erotemic/utool | utool/util_inspect.py | get_func_kwargs | def get_func_kwargs(func, recursive=True):
"""
func = ibeis.run_experiment
SeeAlso:
argparse_funckw
recursive_parse_kwargs
parse_kwarg_keys
parse_func_kwarg_keys
get_func_kwargs
"""
import utool as ut
argspec = ut.get_func_argspec(func)
if argspec.def... | python | def get_func_kwargs(func, recursive=True):
"""
func = ibeis.run_experiment
SeeAlso:
argparse_funckw
recursive_parse_kwargs
parse_kwarg_keys
parse_func_kwarg_keys
get_func_kwargs
"""
import utool as ut
argspec = ut.get_func_argspec(func)
if argspec.def... | [
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Erotemic/utool | utool/util_inspect.py | argparse_funckw | def argparse_funckw(func, defaults={}, **kwargs):
"""
allows kwargs to be specified on the commandline from testfuncs
Args:
func (function):
Kwargs:
lbl, verbose, only_specified, force_keys, type_hint, alias_dict
Returns:
dict: funckw
CommandLine:
python -m ut... | python | def argparse_funckw(func, defaults={}, **kwargs):
"""
allows kwargs to be specified on the commandline from testfuncs
Args:
func (function):
Kwargs:
lbl, verbose, only_specified, force_keys, type_hint, alias_dict
Returns:
dict: funckw
CommandLine:
python -m ut... | [
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Erotemic/utool | utool/Preferences.py | _qt_set_leaf_data | def _qt_set_leaf_data(self, qvar):
""" Sets backend data using QVariants """
if VERBOSE_PREF:
print('')
print('+--- [pref.qt_set_leaf_data]')
print('[pref.qt_set_leaf_data] qvar = %r' % qvar)
print('[pref.qt_set_leaf_data] _intern.name=%r' % self._intern.name)
print('[pre... | python | def _qt_set_leaf_data(self, qvar):
""" Sets backend data using QVariants """
if VERBOSE_PREF:
print('')
print('+--- [pref.qt_set_leaf_data]')
print('[pref.qt_set_leaf_data] qvar = %r' % qvar)
print('[pref.qt_set_leaf_data] _intern.name=%r' % self._intern.name)
print('[pre... | [
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Erotemic/utool | utool/Preferences.py | Pref.toggle | def toggle(self, key):
""" Toggles a boolean key """
val = self[key]
assert isinstance(val, bool), 'key[%r] = %r is not a bool' % (key, val)
self.pref_update(key, not val) | python | def toggle(self, key):
""" Toggles a boolean key """
val = self[key]
assert isinstance(val, bool), 'key[%r] = %r is not a bool' % (key, val)
self.pref_update(key, not val) | [
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Erotemic/utool | utool/Preferences.py | Pref.change_combo_val | def change_combo_val(self, new_val):
"""
Checks to see if a selection is a valid index or choice of a combo
preference
"""
choice_obj = self._intern.value
assert isinstance(self._intern.value, PrefChoice), 'must be a choice'
return choice_obj.get_tuple() | python | def change_combo_val(self, new_val):
"""
Checks to see if a selection is a valid index or choice of a combo
preference
"""
choice_obj = self._intern.value
assert isinstance(self._intern.value, PrefChoice), 'must be a choice'
return choice_obj.get_tuple() | [
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Erotemic/utool | utool/Preferences.py | Pref.iteritems | def iteritems(self):
"""
Wow this class is messed up. I had to overwrite items when
moving to python3, just because I haden't called it yet
"""
for (key, val) in six.iteritems(self.__dict__):
if key in self._printable_exclude:
continue
yiel... | python | def iteritems(self):
"""
Wow this class is messed up. I had to overwrite items when
moving to python3, just because I haden't called it yet
"""
for (key, val) in six.iteritems(self.__dict__):
if key in self._printable_exclude:
continue
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Erotemic/utool | utool/Preferences.py | Pref.to_dict | def to_dict(self, split_structs_bit=False):
""" Converts prefeters to a dictionary.
Children Pref can be optionally separated """
pref_dict = {}
struct_dict = {}
for (key, val) in six.iteritems(self):
if split_structs_bit and isinstance(val, Pref):
str... | python | def to_dict(self, split_structs_bit=False):
""" Converts prefeters to a dictionary.
Children Pref can be optionally separated """
pref_dict = {}
struct_dict = {}
for (key, val) in six.iteritems(self):
if split_structs_bit and isinstance(val, Pref):
str... | [
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Erotemic/utool | utool/Preferences.py | Pref.save | def save(self):
""" Saves prefs to disk in dict format """
fpath = self.get_fpath()
if fpath in ['', None]:
if self._tree.parent is not None:
if VERBOSE_PREF:
print('[pref.save] Can my parent save me?') # ...to disk
return self._tr... | python | def save(self):
""" Saves prefs to disk in dict format """
fpath = self.get_fpath()
if fpath in ['', None]:
if self._tree.parent is not None:
if VERBOSE_PREF:
print('[pref.save] Can my parent save me?') # ...to disk
return self._tr... | [
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Erotemic/utool | utool/Preferences.py | Pref.load | def load(self):
""" Read pref dict stored on disk. Overwriting current values. """
if VERBOSE_PREF:
print('[pref.load()]')
#if not os.path.exists(self._intern.fpath):
# msg = '[pref] fpath=%r does not exist' % (self._intern.fpath)
# return msg
... | python | def load(self):
""" Read pref dict stored on disk. Overwriting current values. """
if VERBOSE_PREF:
print('[pref.load()]')
#if not os.path.exists(self._intern.fpath):
# msg = '[pref] fpath=%r does not exist' % (self._intern.fpath)
# return msg
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Erotemic/utool | utool/Preferences.py | Pref.full_name | def full_name(self):
""" returns name all the way up the tree """
if self._tree.parent is None:
return self._intern.name
return self._tree.parent.full_name() + '.' + self._intern.name | python | def full_name(self):
""" returns name all the way up the tree """
if self._tree.parent is None:
return self._intern.name
return self._tree.parent.full_name() + '.' + self._intern.name | [
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Erotemic/utool | utool/Preferences.py | Pref.pref_update | def pref_update(self, key, new_val):
""" Changes a preference value and saves it to disk """
print('Update and save pref from: %s=%r, to: %s=%r' %
(key, six.text_type(self[key]), key, six.text_type(new_val)))
self.__setattr__(key, new_val)
return self.save() | python | def pref_update(self, key, new_val):
""" Changes a preference value and saves it to disk """
print('Update and save pref from: %s=%r, to: %s=%r' %
(key, six.text_type(self[key]), key, six.text_type(new_val)))
self.__setattr__(key, new_val)
return self.save() | [
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product-definition-center/pdc-client | pdc_client/plugins/permission.py | PermissionPlugin.__get_permissions | def __get_permissions(self, res, **kwargs):
"""
This call returns current login user's permissions.
"""
response = res._(**kwargs)
return response.get('permissions', None) | python | def __get_permissions(self, res, **kwargs):
"""
This call returns current login user's permissions.
"""
response = res._(**kwargs)
return response.get('permissions', None) | [
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Erotemic/utool | utool/util_class.py | inject_all_external_modules | def inject_all_external_modules(self, classname=None,
allow_override='override+warn',
strict=True):
"""
dynamically injects registered module methods into a class instance
FIXME: naming convention and use this in all places where this clas is ... | python | def inject_all_external_modules(self, classname=None,
allow_override='override+warn',
strict=True):
"""
dynamically injects registered module methods into a class instance
FIXME: naming convention and use this in all places where this clas is ... | [
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Erotemic/utool | utool/util_class.py | decorate_class_method | def decorate_class_method(func, classkey=None, skipmain=False):
"""
Will inject all decorated function as methods of classkey
classkey is some identifying string, tuple, or object
func can also be a tuple
"""
#import utool as ut
global __CLASSTYPE_ATTRIBUTES__
assert classkey is not No... | python | def decorate_class_method(func, classkey=None, skipmain=False):
"""
Will inject all decorated function as methods of classkey
classkey is some identifying string, tuple, or object
func can also be a tuple
"""
#import utool as ut
global __CLASSTYPE_ATTRIBUTES__
assert classkey is not No... | [
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Erotemic/utool | utool/util_class.py | decorate_postinject | def decorate_postinject(func, classkey=None, skipmain=False):
"""
Will perform func with argument self after inject_instance is called on classkey
classkey is some identifying string, tuple, or object
"""
#import utool as ut
global __CLASSTYPE_POSTINJECT_FUNCS__
assert classkey is not None,... | python | def decorate_postinject(func, classkey=None, skipmain=False):
"""
Will perform func with argument self after inject_instance is called on classkey
classkey is some identifying string, tuple, or object
"""
#import utool as ut
global __CLASSTYPE_POSTINJECT_FUNCS__
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Erotemic/utool | utool/util_class.py | inject_func_as_method | def inject_func_as_method(self, func, method_name=None, class_=None,
allow_override=False, allow_main=False,
verbose=True, override=None, force=False):
""" Injects a function into an object as a method
Wraps func as a bound method of self. Then injects func i... | python | def inject_func_as_method(self, func, method_name=None, class_=None,
allow_override=False, allow_main=False,
verbose=True, override=None, force=False):
""" Injects a function into an object as a method
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Erotemic/utool | utool/util_class.py | inject_func_as_unbound_method | def inject_func_as_unbound_method(class_, func, method_name=None):
""" This is actually quite simple """
if method_name is None:
method_name = get_funcname(func)
setattr(class_, method_name, func) | python | def inject_func_as_unbound_method(class_, func, method_name=None):
""" This is actually quite simple """
if method_name is None:
method_name = get_funcname(func)
setattr(class_, method_name, func) | [
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Erotemic/utool | utool/util_class.py | reloading_meta_metaclass_factory | def reloading_meta_metaclass_factory(BASE_TYPE=type):
""" hack for pyqt """
class ReloadingMetaclass2(BASE_TYPE):
def __init__(metaself, name, bases, dct):
super(ReloadingMetaclass2, metaself).__init__(name, bases, dct)
#print('Making rrr for %r' % (name,))
metaself.r... | python | def reloading_meta_metaclass_factory(BASE_TYPE=type):
""" hack for pyqt """
class ReloadingMetaclass2(BASE_TYPE):
def __init__(metaself, name, bases, dct):
super(ReloadingMetaclass2, metaself).__init__(name, bases, dct)
#print('Making rrr for %r' % (name,))
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Erotemic/utool | utool/util_class.py | reload_class | def reload_class(self, verbose=True, reload_module=True):
"""
special class reloading function
This function is often injected as rrr of classes
"""
import utool as ut
verbose = verbose or VERBOSE_CLASS
classname = self.__class__.__name__
try:
modname = self.__class__.__module__
... | python | def reload_class(self, verbose=True, reload_module=True):
"""
special class reloading function
This function is often injected as rrr of classes
"""
import utool as ut
verbose = verbose or VERBOSE_CLASS
classname = self.__class__.__name__
try:
modname = self.__class__.__module__
... | [
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Erotemic/utool | utool/util_class.py | reload_class_methods | def reload_class_methods(self, class_, verbose=True):
"""
rebinds all class methods
Args:
self (object): class instance to reload
class_ (type): type to reload as
Example:
>>> # DISABLE_DOCTEST
>>> from utool.util_class import * # NOQA
>>> self = '?'
>>... | python | def reload_class_methods(self, class_, verbose=True):
"""
rebinds all class methods
Args:
self (object): class instance to reload
class_ (type): type to reload as
Example:
>>> # DISABLE_DOCTEST
>>> from utool.util_class import * # NOQA
>>> self = '?'
>>... | [
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Example:
>>> # DISABLE_DOCTEST
>>> from utool.util_class import * # NOQA
>>> self = '?'
>>> class_ = '?'
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Erotemic/utool | utool/util_class.py | remove_private_obfuscation | def remove_private_obfuscation(self):
"""
removes the python obfuscation of class privates so they can be executed as
they appear in class source. Useful when playing with IPython.
"""
classname = self.__class__.__name__
attrlist = [attr for attr in dir(self) if attr.startswith('_' + classname +... | python | def remove_private_obfuscation(self):
"""
removes the python obfuscation of class privates so they can be executed as
they appear in class source. Useful when playing with IPython.
"""
classname = self.__class__.__name__
attrlist = [attr for attr in dir(self) if attr.startswith('_' + classname +... | [
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glormph/msstitch | src/app/actions/mslookup/proteinquant.py | create_peptidequant_lookup | def create_peptidequant_lookup(fns, pqdb, poolnames, pepseq_colnr,
ms1_qcolpattern=None, isobqcolpattern=None,
psmnrpattern=None, fdrcolpattern=None,
pepcolpattern=None):
"""Calls lower level function to create a peptide qu... | python | def create_peptidequant_lookup(fns, pqdb, poolnames, pepseq_colnr,
ms1_qcolpattern=None, isobqcolpattern=None,
psmnrpattern=None, fdrcolpattern=None,
pepcolpattern=None):
"""Calls lower level function to create a peptide qu... | [
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glormph/msstitch | src/app/actions/mslookup/proteinquant.py | create_proteinquant_lookup | def create_proteinquant_lookup(fns, pqdb, poolnames, protacc_colnr,
ms1_qcolpattern=None, isobqcolpattern=None,
psmnrpattern=None, probcolpattern=None,
fdrcolpattern=None, pepcolpattern=None):
"""Calls lower level function ... | python | def create_proteinquant_lookup(fns, pqdb, poolnames, protacc_colnr,
ms1_qcolpattern=None, isobqcolpattern=None,
psmnrpattern=None, probcolpattern=None,
fdrcolpattern=None, pepcolpattern=None):
"""Calls lower level function ... | [
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glormph/msstitch | src/app/actions/mslookup/proteinquant.py | create_pep_protein_quant_lookup | def create_pep_protein_quant_lookup(fns, pqdb, poolnames, featcolnr, patterns,
storefuns, isobqcolpattern=None,
psmnrpattern=None):
"""Does the work when creating peptide and protein quant lookups. This
loops through storing options and par... | python | def create_pep_protein_quant_lookup(fns, pqdb, poolnames, featcolnr, patterns,
storefuns, isobqcolpattern=None,
psmnrpattern=None):
"""Does the work when creating peptide and protein quant lookups. This
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glormph/msstitch | src/app/actions/mslookup/proteinquant.py | store_single_col_data | def store_single_col_data(fns, prottable_id_map, pacc_map, pqdbmethod,
protacc_colnr, colmap):
"""General method to store single column data from protein tables
in lookup"""
to_store = []
for fn, header, pquant in tsvreader.generate_tsv_pep_protein_quants(fns):
pacc_id ... | python | def store_single_col_data(fns, prottable_id_map, pacc_map, pqdbmethod,
protacc_colnr, colmap):
"""General method to store single column data from protein tables
in lookup"""
to_store = []
for fn, header, pquant in tsvreader.generate_tsv_pep_protein_quants(fns):
pacc_id ... | [
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glormph/msstitch | src/app/actions/mslookup/proteinquant.py | map_psmnrcol_to_quantcol | def map_psmnrcol_to_quantcol(quantcols, psmcols, tablefn_map):
"""This function yields tuples of table filename, isobaric quant column
and if necessary number-of-PSM column"""
if not psmcols:
for fn in quantcols:
for qcol in quantcols[fn]:
yield (tablefn_map[fn], qcol)
... | python | def map_psmnrcol_to_quantcol(quantcols, psmcols, tablefn_map):
"""This function yields tuples of table filename, isobaric quant column
and if necessary number-of-PSM column"""
if not psmcols:
for fn in quantcols:
for qcol in quantcols[fn]:
yield (tablefn_map[fn], qcol)
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