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Erotemic/utool | utool/util_cache.py | tryload_cache_list_with_compute | def tryload_cache_list_with_compute(use_cache, dpath, fname, cfgstr_list,
compute_fn, *args):
"""
tries to load data, but computes it if it can't give a compute function
"""
# Load precomputed values
if use_cache is False:
data_list = [None] * len(cfgstr_l... | python | def tryload_cache_list_with_compute(use_cache, dpath, fname, cfgstr_list,
compute_fn, *args):
"""
tries to load data, but computes it if it can't give a compute function
"""
# Load precomputed values
if use_cache is False:
data_list = [None] * len(cfgstr_l... | [
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Erotemic/utool | utool/util_cache.py | to_json | def to_json(val, allow_pickle=False, pretty=False):
r"""
Converts a python object to a JSON string using the utool convention
Args:
val (object):
Returns:
str: json_str
References:
http://stackoverflow.com/questions/11561932/why-does-json-dumpslistnp
CommandLine:
... | python | def to_json(val, allow_pickle=False, pretty=False):
r"""
Converts a python object to a JSON string using the utool convention
Args:
val (object):
Returns:
str: json_str
References:
http://stackoverflow.com/questions/11561932/why-does-json-dumpslistnp
CommandLine:
... | [
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CommandLine:
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Erotemic/utool | utool/util_cache.py | from_json | def from_json(json_str, allow_pickle=False):
"""
Decodes a JSON object specified in the utool convention
Args:
json_str (str):
allow_pickle (bool): (default = False)
Returns:
object: val
CommandLine:
python -m utool.util_cache from_json --show
Example:
... | python | def from_json(json_str, allow_pickle=False):
"""
Decodes a JSON object specified in the utool convention
Args:
json_str (str):
allow_pickle (bool): (default = False)
Returns:
object: val
CommandLine:
python -m utool.util_cache from_json --show
Example:
... | [
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Erotemic/utool | utool/util_cache.py | cachestr_repr | def cachestr_repr(val):
"""
Representation of an object as a cache string.
"""
try:
memview = memoryview(val)
return memview.tobytes()
except Exception:
try:
return to_json(val)
except Exception:
# SUPER HACK
if repr(val.__class__) ... | python | def cachestr_repr(val):
"""
Representation of an object as a cache string.
"""
try:
memview = memoryview(val)
return memview.tobytes()
except Exception:
try:
return to_json(val)
except Exception:
# SUPER HACK
if repr(val.__class__) ... | [
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Erotemic/utool | utool/util_cache.py | cached_func | def cached_func(fname=None, cache_dir='default', appname='utool', key_argx=None,
key_kwds=None, use_cache=None, verbose=None):
r"""
Wraps a function with a Cacher object
uses a hash of arguments as input
Args:
fname (str): file name (defaults to function name)
cache_di... | python | def cached_func(fname=None, cache_dir='default', appname='utool', key_argx=None,
key_kwds=None, use_cache=None, verbose=None):
r"""
Wraps a function with a Cacher object
uses a hash of arguments as input
Args:
fname (str): file name (defaults to function name)
cache_di... | [
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Erotemic/utool | utool/util_cache.py | get_global_shelf_fpath | def get_global_shelf_fpath(appname='default', ensure=False):
""" Returns the filepath to the global shelf """
global_cache_dir = get_global_cache_dir(appname, ensure=ensure)
shelf_fpath = join(global_cache_dir, meta_util_constants.global_cache_fname)
return shelf_fpath | python | def get_global_shelf_fpath(appname='default', ensure=False):
""" Returns the filepath to the global shelf """
global_cache_dir = get_global_cache_dir(appname, ensure=ensure)
shelf_fpath = join(global_cache_dir, meta_util_constants.global_cache_fname)
return shelf_fpath | [
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Erotemic/utool | utool/util_cache.py | global_cache_write | def global_cache_write(key, val, appname='default'):
""" Writes cache files to a safe place in each operating system """
with GlobalShelfContext(appname) as shelf:
shelf[key] = val | python | def global_cache_write(key, val, appname='default'):
""" Writes cache files to a safe place in each operating system """
with GlobalShelfContext(appname) as shelf:
shelf[key] = val | [
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Erotemic/utool | utool/util_cache.py | delete_global_cache | def delete_global_cache(appname='default'):
""" Reads cache files to a safe place in each operating system """
#close_global_shelf(appname)
shelf_fpath = get_global_shelf_fpath(appname)
util_path.remove_file(shelf_fpath, verbose=True, dryrun=False) | python | def delete_global_cache(appname='default'):
""" Reads cache files to a safe place in each operating system """
#close_global_shelf(appname)
shelf_fpath = get_global_shelf_fpath(appname)
util_path.remove_file(shelf_fpath, verbose=True, dryrun=False) | [
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Erotemic/utool | utool/util_cache.py | Cacher.existing_versions | def existing_versions(self):
"""
Returns data with different cfgstr values that were previously computed
with this cacher.
"""
import glob
pattern = self.fname + '_*' + self.ext
for fname in glob.glob1(self.dpath, pattern):
fpath = join(self.dpath, fna... | python | def existing_versions(self):
"""
Returns data with different cfgstr values that were previously computed
with this cacher.
"""
import glob
pattern = self.fname + '_*' + self.ext
for fname in glob.glob1(self.dpath, pattern):
fpath = join(self.dpath, fna... | [
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Erotemic/utool | utool/util_cache.py | Cacher.tryload | def tryload(self, cfgstr=None):
"""
Like load, but returns None if the load fails
"""
if cfgstr is None:
cfgstr = self.cfgstr
if cfgstr is None:
import warnings
warnings.warn('No cfgstr given in Cacher constructor or call')
cfgstr =... | python | def tryload(self, cfgstr=None):
"""
Like load, but returns None if the load fails
"""
if cfgstr is None:
cfgstr = self.cfgstr
if cfgstr is None:
import warnings
warnings.warn('No cfgstr given in Cacher constructor or call')
cfgstr =... | [
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Erotemic/utool | utool/util_cache.py | Cachable.fuzzyload | def fuzzyload(self, cachedir=None, partial_cfgstr='', **kwargs):
"""
Try and load from a partially specified configuration string
"""
valid_targets = self.glob_valid_targets(cachedir, partial_cfgstr)
if len(valid_targets) != 1:
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msg = 'ne... | python | def fuzzyload(self, cachedir=None, partial_cfgstr='', **kwargs):
"""
Try and load from a partially specified configuration string
"""
valid_targets = self.glob_valid_targets(cachedir, partial_cfgstr)
if len(valid_targets) != 1:
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Erotemic/utool | utool/util_cache.py | Cachable.load | def load(self, cachedir=None, cfgstr=None, fpath=None, verbose=None,
quiet=QUIET, ignore_keys=None):
"""
Loads the result from the given database
"""
if verbose is None:
verbose = getattr(self, 'verbose', VERBOSE)
if fpath is None:
fpath = sel... | python | def load(self, cachedir=None, cfgstr=None, fpath=None, verbose=None,
quiet=QUIET, ignore_keys=None):
"""
Loads the result from the given database
"""
if verbose is None:
verbose = getattr(self, 'verbose', VERBOSE)
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fpath = sel... | [
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Erotemic/utool | utool/util_path.py | truepath_relative | def truepath_relative(path, otherpath=None):
""" Normalizes and returns absolute path with so specs
Args:
path (str): path to file or directory
otherpath (None): (default = None)
Returns:
str: path_
CommandLine:
python -m utool.util_path --exec-truepath_relative --sho... | python | def truepath_relative(path, otherpath=None):
""" Normalizes and returns absolute path with so specs
Args:
path (str): path to file or directory
otherpath (None): (default = None)
Returns:
str: path_
CommandLine:
python -m utool.util_path --exec-truepath_relative --sho... | [
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Erotemic/utool | utool/util_path.py | tail | def tail(fpath, n=2, trailing=True):
""" Alias for path_ndir_split """
return path_ndir_split(fpath, n=n, trailing=trailing) | python | def tail(fpath, n=2, trailing=True):
""" Alias for path_ndir_split """
return path_ndir_split(fpath, n=n, trailing=trailing) | [
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Erotemic/utool | utool/util_path.py | unexpanduser | def unexpanduser(path):
r"""
Replaces home directory with '~'
"""
homedir = expanduser('~')
if path.startswith(homedir):
path = '~' + path[len(homedir):]
return path | python | def unexpanduser(path):
r"""
Replaces home directory with '~'
"""
homedir = expanduser('~')
if path.startswith(homedir):
path = '~' + path[len(homedir):]
return path | [
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Erotemic/utool | utool/util_path.py | path_ndir_split | def path_ndir_split(path_, n, force_unix=True, winroot='C:', trailing=True):
r"""
Shows only a little bit of the path. Up to the n bottom-level directories
TODO: rename to path_tail? ndir_split?
Returns:
(str) the trailing n paths of path.
CommandLine:
python3 -m utool.util_path -... | python | def path_ndir_split(path_, n, force_unix=True, winroot='C:', trailing=True):
r"""
Shows only a little bit of the path. Up to the n bottom-level directories
TODO: rename to path_tail? ndir_split?
Returns:
(str) the trailing n paths of path.
CommandLine:
python3 -m utool.util_path -... | [
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Erotemic/utool | utool/util_path.py | augpath | def augpath(path, augsuf='', augext='', augpref='', augdir=None, newext=None,
newfname=None, ensure=False, prefix=None, suffix=None):
"""
augments end of path before the extension.
augpath
Args:
path (str):
augsuf (str): augment filename before extension
Returns:
... | python | def augpath(path, augsuf='', augext='', augpref='', augdir=None, newext=None,
newfname=None, ensure=False, prefix=None, suffix=None):
"""
augments end of path before the extension.
augpath
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path (str):
augsuf (str): augment filename before extension
Returns:
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Erotemic/utool | utool/util_path.py | remove_files_in_dir | def remove_files_in_dir(dpath, fname_pattern_list='*', recursive=False,
verbose=VERBOSE, dryrun=False, ignore_errors=False):
""" Removes files matching a pattern from a directory """
if isinstance(fname_pattern_list, six.string_types):
fname_pattern_list = [fname_pattern_list]
... | python | def remove_files_in_dir(dpath, fname_pattern_list='*', recursive=False,
verbose=VERBOSE, dryrun=False, ignore_errors=False):
""" Removes files matching a pattern from a directory """
if isinstance(fname_pattern_list, six.string_types):
fname_pattern_list = [fname_pattern_list]
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Erotemic/utool | utool/util_path.py | delete | def delete(path, dryrun=False, recursive=True, verbose=None, print_exists=True,
ignore_errors=True):
""" Removes a file, directory, or symlink """
if verbose is None:
verbose = VERBOSE
if not QUIET:
verbose = 1
if verbose > 0:
print('[util_path] Deleting path=%... | python | def delete(path, dryrun=False, recursive=True, verbose=None, print_exists=True,
ignore_errors=True):
""" Removes a file, directory, or symlink """
if verbose is None:
verbose = VERBOSE
if not QUIET:
verbose = 1
if verbose > 0:
print('[util_path] Deleting path=%... | [
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Erotemic/utool | utool/util_path.py | remove_existing_fpaths | def remove_existing_fpaths(fpath_list, verbose=VERBOSE, quiet=QUIET,
strict=False, print_caller=PRINT_CALLER,
lbl='files'):
""" checks existance before removing. then tries to remove exisint paths """
import utool as ut
if print_caller:
print(uti... | python | def remove_existing_fpaths(fpath_list, verbose=VERBOSE, quiet=QUIET,
strict=False, print_caller=PRINT_CALLER,
lbl='files'):
""" checks existance before removing. then tries to remove exisint paths """
import utool as ut
if print_caller:
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Erotemic/utool | utool/util_path.py | remove_fpaths | def remove_fpaths(fpaths, verbose=VERBOSE, quiet=QUIET, strict=False,
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"""
Removes multiple file paths
"""
import utool as ut
if print_caller:
print(util_dbg.get_caller_name(range(1, 4)) + ' called remove_fpaths')
n_total = len(fp... | python | def remove_fpaths(fpaths, verbose=VERBOSE, quiet=QUIET, strict=False,
print_caller=PRINT_CALLER, lbl='files'):
"""
Removes multiple file paths
"""
import utool as ut
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Erotemic/utool | utool/util_path.py | longest_existing_path | def longest_existing_path(_path):
r"""
Returns the longest root of _path that exists
Args:
_path (str): path string
Returns:
str: _path - path string
CommandLine:
python -m utool.util_path --exec-longest_existing_path
Example:
>>> # ENABLE_DOCTEST
>>... | python | def longest_existing_path(_path):
r"""
Returns the longest root of _path that exists
Args:
_path (str): path string
Returns:
str: _path - path string
CommandLine:
python -m utool.util_path --exec-longest_existing_path
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Erotemic/utool | utool/util_path.py | get_path_type | def get_path_type(path_):
r"""
returns if a path is a file, directory, link, or mount
"""
path_type = ''
if isfile(path_):
path_type += 'file'
if isdir(path_):
path_type += 'directory'
if islink(path_):
path_type += 'link'
if ismount(path_):
path_type += '... | python | def get_path_type(path_):
r"""
returns if a path is a file, directory, link, or mount
"""
path_type = ''
if isfile(path_):
path_type += 'file'
if isdir(path_):
path_type += 'directory'
if islink(path_):
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Erotemic/utool | utool/util_path.py | checkpath | def checkpath(path_, verbose=VERYVERBOSE, n=None, info=VERYVERBOSE):
r""" verbose wrapper around ``os.path.exists``
Returns:
true if ``path_`` exists on the filesystem show only the
top `n` directories
Args:
path_ (str): path string
verbose (bool): verbosity flag(default = ... | python | def checkpath(path_, verbose=VERYVERBOSE, n=None, info=VERYVERBOSE):
r""" verbose wrapper around ``os.path.exists``
Returns:
true if ``path_`` exists on the filesystem show only the
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path_ (str): path string
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Erotemic/utool | utool/util_path.py | ensurepath | def ensurepath(path_, verbose=None):
""" DEPRICATE - alias - use ensuredir instead """
if verbose is None:
verbose = VERYVERBOSE
return ensuredir(path_, verbose=verbose) | python | def ensurepath(path_, verbose=None):
""" DEPRICATE - alias - use ensuredir instead """
if verbose is None:
verbose = VERYVERBOSE
return ensuredir(path_, verbose=verbose) | [
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Erotemic/utool | utool/util_path.py | ensuredir | def ensuredir(path_, verbose=None, info=False, mode=0o1777):
r"""
Ensures that directory will exist. creates new dir with sticky bits by
default
Args:
path (str): dpath to ensure. Can also be a tuple to send to join
info (bool): if True prints extra information
mode (int): octal... | python | def ensuredir(path_, verbose=None, info=False, mode=0o1777):
r"""
Ensures that directory will exist. creates new dir with sticky bits by
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Args:
path (str): dpath to ensure. Can also be a tuple to send to join
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Erotemic/utool | utool/util_path.py | touch | def touch(fpath, times=None, verbose=True):
r"""
Creates file if it doesnt exist
Args:
fpath (str): file path
times (None):
verbose (bool):
Example:
>>> # DISABLE_DOCTEST
>>> from utool.util_path import * # NOQA
>>> fpath = '?'
>>> times = None
... | python | def touch(fpath, times=None, verbose=True):
r"""
Creates file if it doesnt exist
Args:
fpath (str): file path
times (None):
verbose (bool):
Example:
>>> # DISABLE_DOCTEST
>>> from utool.util_path import * # NOQA
>>> fpath = '?'
>>> times = None
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Erotemic/utool | utool/util_path.py | copy_list | def copy_list(src_list, dst_list, lbl='Copying',
ioerr_ok=False, sherro_ok=False, oserror_ok=False):
""" Copies all data and stat info """
# Feb - 6 - 2014 Copy function
task_iter = zip(src_list, dst_list)
def docopy(src, dst):
try:
shutil.copy2(src, dst)
except... | python | def copy_list(src_list, dst_list, lbl='Copying',
ioerr_ok=False, sherro_ok=False, oserror_ok=False):
""" Copies all data and stat info """
# Feb - 6 - 2014 Copy function
task_iter = zip(src_list, dst_list)
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Erotemic/utool | utool/util_path.py | glob | def glob(dpath, pattern=None, recursive=False, with_files=True, with_dirs=True,
maxdepth=None, exclude_dirs=[], fullpath=True, **kwargs):
r"""
Globs directory for pattern
DEPRICATED:
use pathlib.glob instead
Args:
dpath (str): directory path or pattern
pattern (str or ... | python | def glob(dpath, pattern=None, recursive=False, with_files=True, with_dirs=True,
maxdepth=None, exclude_dirs=[], fullpath=True, **kwargs):
r"""
Globs directory for pattern
DEPRICATED:
use pathlib.glob instead
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dpath (str): directory path or pattern
pattern (str or ... | [
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Erotemic/utool | utool/util_path.py | num_images_in_dir | def num_images_in_dir(path):
"""
returns the number of images in a directory
"""
num_imgs = 0
for root, dirs, files in os.walk(path):
for fname in files:
if fpath_has_imgext(fname):
num_imgs += 1
return num_imgs | python | def num_images_in_dir(path):
"""
returns the number of images in a directory
"""
num_imgs = 0
for root, dirs, files in os.walk(path):
for fname in files:
if fpath_has_imgext(fname):
num_imgs += 1
return num_imgs | [
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Erotemic/utool | utool/util_path.py | fpath_has_ext | def fpath_has_ext(fname, exts, case_sensitive=False):
""" returns true if the filename has any of the given extensions """
fname_ = fname.lower() if not case_sensitive else fname
if case_sensitive:
ext_pats = ['*' + ext for ext in exts]
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ext_pats = ['*' + ext.lower() for ext in exts... | python | def fpath_has_ext(fname, exts, case_sensitive=False):
""" returns true if the filename has any of the given extensions """
fname_ = fname.lower() if not case_sensitive else fname
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ext_pats = ['*' + ext for ext in exts]
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Erotemic/utool | utool/util_path.py | get_modpath | def get_modpath(modname, prefer_pkg=False, prefer_main=False):
r"""
Returns path to module
Args:
modname (str or module): module name or actual module
Returns:
str: module_dir
CommandLine:
python -m utool.util_path --test-get_modpath
Setup:
>>> from utool.util... | python | def get_modpath(modname, prefer_pkg=False, prefer_main=False):
r"""
Returns path to module
Args:
modname (str or module): module name or actual module
Returns:
str: module_dir
CommandLine:
python -m utool.util_path --test-get_modpath
Setup:
>>> from utool.util... | [
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Erotemic/utool | utool/util_path.py | get_relative_modpath | def get_relative_modpath(module_fpath):
"""
Returns path to module relative to the package root
Args:
module_fpath (str): module filepath
Returns:
str: modname
Example:
>>> # ENABLE_DOCTEST
>>> from utool.util_path import * # NOQA
>>> import utool as ut
... | python | def get_relative_modpath(module_fpath):
"""
Returns path to module relative to the package root
Args:
module_fpath (str): module filepath
Returns:
str: modname
Example:
>>> # ENABLE_DOCTEST
>>> from utool.util_path import * # NOQA
>>> import utool as ut
... | [
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Erotemic/utool | utool/util_path.py | get_modname_from_modpath | def get_modname_from_modpath(module_fpath):
"""
returns importable name from file path
get_modname_from_modpath
Args:
module_fpath (str): module filepath
Returns:
str: modname
Example:
>>> # ENABLE_DOCTEST
>>> from utool.util_path import * # NOQA
>>> ... | python | def get_modname_from_modpath(module_fpath):
"""
returns importable name from file path
get_modname_from_modpath
Args:
module_fpath (str): module filepath
Returns:
str: modname
Example:
>>> # ENABLE_DOCTEST
>>> from utool.util_path import * # NOQA
>>> ... | [
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Example:
>>> # ENABLE_DOCTEST
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Erotemic/utool | utool/util_path.py | ls | def ls(path, pattern='*'):
""" like unix ls - lists all files and dirs in path"""
path_iter = glob(path, pattern, recursive=False)
return sorted(list(path_iter)) | python | def ls(path, pattern='*'):
""" like unix ls - lists all files and dirs in path"""
path_iter = glob(path, pattern, recursive=False)
return sorted(list(path_iter)) | [
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Erotemic/utool | utool/util_path.py | ls_moduledirs | def ls_moduledirs(path, private=True, full=True):
""" lists all dirs which are python modules in path """
dir_list = ls_dirs(path)
module_dir_iter = filter(is_module_dir, dir_list)
if not private:
module_dir_iter = filterfalse(is_private_module, module_dir_iter)
if not full:
module_d... | python | def ls_moduledirs(path, private=True, full=True):
""" lists all dirs which are python modules in path """
dir_list = ls_dirs(path)
module_dir_iter = filter(is_module_dir, dir_list)
if not private:
module_dir_iter = filterfalse(is_private_module, module_dir_iter)
if not full:
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Erotemic/utool | utool/util_path.py | list_images | def list_images(img_dpath_, ignore_list=[], recursive=False, fullpath=False,
full=None, sort=True):
r"""
Returns a list of images in a directory. By default returns relative paths.
TODO: rename to ls_images
TODO: Change all instances of fullpath to full
Args:
img_dpath_ (st... | python | def list_images(img_dpath_, ignore_list=[], recursive=False, fullpath=False,
full=None, sort=True):
r"""
Returns a list of images in a directory. By default returns relative paths.
TODO: rename to ls_images
TODO: Change all instances of fullpath to full
Args:
img_dpath_ (st... | [
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TODO: Change all instances of fullpath to full
Args:
img_dpath_ (str):
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recursive (bool): (default = False)
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Erotemic/utool | utool/util_path.py | assertpath | def assertpath(path_, msg='', **kwargs):
""" Asserts that a patha exists """
if NO_ASSERTS:
return
if path_ is None:
raise AssertionError('path is None! %s' % (path_, msg))
if path_ == '':
raise AssertionError('path=%r is the empty string! %s' % (path_, msg))
if not checkpath... | python | def assertpath(path_, msg='', **kwargs):
""" Asserts that a patha exists """
if NO_ASSERTS:
return
if path_ is None:
raise AssertionError('path is None! %s' % (path_, msg))
if path_ == '':
raise AssertionError('path=%r is the empty string! %s' % (path_, msg))
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Erotemic/utool | utool/util_path.py | matching_fpaths | def matching_fpaths(dpath_list, include_patterns, exclude_dirs=[],
greater_exclude_dirs=[], exclude_patterns=[],
recursive=True):
r"""
walks dpath lists returning all directories that match the requested
pattern.
Args:
dpath_list (list):
inc... | python | def matching_fpaths(dpath_list, include_patterns, exclude_dirs=[],
greater_exclude_dirs=[], exclude_patterns=[],
recursive=True):
r"""
walks dpath lists returning all directories that match the requested
pattern.
Args:
dpath_list (list):
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Erotemic/utool | utool/util_path.py | sed | def sed(regexpr, repl, force=False, recursive=False, dpath_list=None,
fpath_list=None, verbose=None, include_patterns=None,
exclude_patterns=[]):
"""
Python implementation of sed. NOT FINISHED
searches and replaces text in files
Args:
regexpr (str): regx patterns to find
... | python | def sed(regexpr, repl, force=False, recursive=False, dpath_list=None,
fpath_list=None, verbose=None, include_patterns=None,
exclude_patterns=[]):
"""
Python implementation of sed. NOT FINISHED
searches and replaces text in files
Args:
regexpr (str): regx patterns to find
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Erotemic/utool | utool/util_path.py | grep | def grep(regex_list, recursive=True, dpath_list=None, include_patterns=None,
exclude_dirs=[], greater_exclude_dirs=None, inverse=False,
exclude_patterns=[], verbose=VERBOSE, fpath_list=None, reflags=0,
cache=None):
r"""
greps for patterns
Python implementation of grep. NOT FINISHE... | python | def grep(regex_list, recursive=True, dpath_list=None, include_patterns=None,
exclude_dirs=[], greater_exclude_dirs=None, inverse=False,
exclude_patterns=[], verbose=VERBOSE, fpath_list=None, reflags=0,
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greps for patterns
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Erotemic/utool | utool/util_path.py | get_win32_short_path_name | def get_win32_short_path_name(long_name):
"""
Gets the short path name of a given long path.
References:
http://stackoverflow.com/a/23598461/200291
http://stackoverflow.com/questions/23598289/get-win-short-fname-python
Example:
>>> # DISABLE_DOCTEST
>>> from utool.util_... | python | def get_win32_short_path_name(long_name):
"""
Gets the short path name of a given long path.
References:
http://stackoverflow.com/a/23598461/200291
http://stackoverflow.com/questions/23598289/get-win-short-fname-python
Example:
>>> # DISABLE_DOCTEST
>>> from utool.util_... | [
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Erotemic/utool | utool/util_path.py | platform_path | def platform_path(path):
r"""
Returns platform specific path for pyinstaller usage
Args:
path (str):
Returns:
str: path2
CommandLine:
python -m utool.util_path --test-platform_path
Example:
>>> # ENABLE_DOCTEST
>>> # FIXME: find examples of the wird pa... | python | def platform_path(path):
r"""
Returns platform specific path for pyinstaller usage
Args:
path (str):
Returns:
str: path2
CommandLine:
python -m utool.util_path --test-platform_path
Example:
>>> # ENABLE_DOCTEST
>>> # FIXME: find examples of the wird pa... | [
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str: path2
CommandLine:
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Example:
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>>> # FIXME: find examples of the wird paths this fixes (mostly on win... | [
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Erotemic/utool | utool/util_path.py | find_lib_fpath | def find_lib_fpath(libname, root_dir, recurse_down=True, verbose=False, debug=False):
""" Search for the library """
def get_lib_fname_list(libname):
"""
input <libname>: library name (e.g. 'hesaff', not 'libhesaff')
returns <libnames>: list of plausible library file names
"""
... | python | def find_lib_fpath(libname, root_dir, recurse_down=True, verbose=False, debug=False):
""" Search for the library """
def get_lib_fname_list(libname):
"""
input <libname>: library name (e.g. 'hesaff', not 'libhesaff')
returns <libnames>: list of plausible library file names
"""
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Erotemic/utool | utool/util_path.py | ensure_mingw_drive | def ensure_mingw_drive(win32_path):
r""" replaces windows drives with mingw style drives
Args:
win32_path (str):
CommandLine:
python -m utool.util_path --test-ensure_mingw_drive
Example:
>>> # DISABLE_DOCTEST
>>> from utool.util_path import * # NOQA
>>> win32_... | python | def ensure_mingw_drive(win32_path):
r""" replaces windows drives with mingw style drives
Args:
win32_path (str):
CommandLine:
python -m utool.util_path --test-ensure_mingw_drive
Example:
>>> # DISABLE_DOCTEST
>>> from utool.util_path import * # NOQA
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>>> from utool.util_path import * # NOQA
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Erotemic/utool | utool/util_path.py | ancestor_paths | def ancestor_paths(start=None, limit={}):
"""
All paths above you
"""
import utool as ut
limit = ut.ensure_iterable(limit)
limit = {expanduser(p) for p in limit}.union(set(limit))
if start is None:
start = os.getcwd()
path = start
prev = None
while path != prev and prev n... | python | def ancestor_paths(start=None, limit={}):
"""
All paths above you
"""
import utool as ut
limit = ut.ensure_iterable(limit)
limit = {expanduser(p) for p in limit}.union(set(limit))
if start is None:
start = os.getcwd()
path = start
prev = None
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Erotemic/utool | utool/util_path.py | search_candidate_paths | def search_candidate_paths(candidate_path_list, candidate_name_list=None,
priority_paths=None, required_subpaths=[],
verbose=None):
"""
searches for existing paths that meed a requirement
Args:
candidate_path_list (list): list of paths to check.... | python | def search_candidate_paths(candidate_path_list, candidate_name_list=None,
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verbose=None):
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searches for existing paths that meed a requirement
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Erotemic/utool | utool/util_path.py | symlink | def symlink(real_path, link_path, overwrite=False, on_error='raise',
verbose=2):
"""
Attempt to create a symbolic link.
TODO:
Can this be fixed on windows?
Args:
path (str): path to real file or directory
link_path (str): path to desired location for symlink
... | python | def symlink(real_path, link_path, overwrite=False, on_error='raise',
verbose=2):
"""
Attempt to create a symbolic link.
TODO:
Can this be fixed on windows?
Args:
path (str): path to real file or directory
link_path (str): path to desired location for symlink
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Erotemic/utool | utool/util_path.py | remove_broken_links | def remove_broken_links(dpath, verbose=True):
"""
Removes all broken links in a directory
Args:
dpath (str): directory path
Returns:
int: num removed
References:
http://stackoverflow.com/questions/20794/find-broken-symlinks-with-python
CommandLine:
python -m ... | python | def remove_broken_links(dpath, verbose=True):
"""
Removes all broken links in a directory
Args:
dpath (str): directory path
Returns:
int: num removed
References:
http://stackoverflow.com/questions/20794/find-broken-symlinks-with-python
CommandLine:
python -m ... | [
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Erotemic/utool | utool/util_path.py | non_existing_path | def non_existing_path(path_, dpath=None, offset=0, suffix=None,
force_fmt=False):
r"""
Searches for and finds a path garuenteed to not exist.
Args:
path_ (str): path string. If may include a "%" formatstr.
dpath (str): directory path(default = None)
off... | python | def non_existing_path(path_, dpath=None, offset=0, suffix=None,
force_fmt=False):
r"""
Searches for and finds a path garuenteed to not exist.
Args:
path_ (str): path string. If may include a "%" formatstr.
dpath (str): directory path(default = None)
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glormph/msstitch | src/app/actions/mslookup/quant.py | create_isobaric_quant_lookup | def create_isobaric_quant_lookup(quantdb, specfn_consensus_els, channelmap):
"""Creates an sqlite lookup table of scannrs with quant data.
spectra - an iterable of tupled (filename, spectra)
consensus_els - a iterable with consensusElements"""
# store quantchannels in lookup and generate a db_id vs cha... | python | def create_isobaric_quant_lookup(quantdb, specfn_consensus_els, channelmap):
"""Creates an sqlite lookup table of scannrs with quant data.
spectra - an iterable of tupled (filename, spectra)
consensus_els - a iterable with consensusElements"""
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glormph/msstitch | src/app/actions/mslookup/quant.py | get_precursors_from_window | def get_precursors_from_window(quantdb, minmz):
"""Returns a dict of a specified amount of features from the
ms1 quant database, and the highest mz of those features"""
featmap = {}
mz = False
features = quantdb.get_precursor_quant_window(FEATURE_ALIGN_WINDOW_AMOUNT,
... | python | def get_precursors_from_window(quantdb, minmz):
"""Returns a dict of a specified amount of features from the
ms1 quant database, and the highest mz of those features"""
featmap = {}
mz = False
features = quantdb.get_precursor_quant_window(FEATURE_ALIGN_WINDOW_AMOUNT,
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glormph/msstitch | src/app/actions/mslookup/quant.py | get_quant_data | def get_quant_data(cons_el):
"""Gets quant data from consensusXML element"""
quant_out = {}
for reporter in cons_el.findall('.//element'):
quant_out[reporter.attrib['map']] = reporter.attrib['it']
return quant_out | python | def get_quant_data(cons_el):
"""Gets quant data from consensusXML element"""
quant_out = {}
for reporter in cons_el.findall('.//element'):
quant_out[reporter.attrib['map']] = reporter.attrib['it']
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Erotemic/utool | utool/util_cplat.py | get_plat_specifier | def get_plat_specifier():
"""
Standard platform specifier used by distutils
"""
import setuptools # NOQA
import distutils
plat_name = distutils.util.get_platform()
plat_specifier = ".%s-%s" % (plat_name, sys.version[0:3])
if hasattr(sys, 'gettotalrefcount'):
plat_specifier += '-... | python | def get_plat_specifier():
"""
Standard platform specifier used by distutils
"""
import setuptools # NOQA
import distutils
plat_name = distutils.util.get_platform()
plat_specifier = ".%s-%s" % (plat_name, sys.version[0:3])
if hasattr(sys, 'gettotalrefcount'):
plat_specifier += '-... | [
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Erotemic/utool | utool/util_cplat.py | get_system_python_library | def get_system_python_library():
"""
FIXME; hacky way of finding python library. Not cross platform yet.
"""
import os
import utool as ut
from os.path import basename, realpath
pyname = basename(realpath(sys.executable))
ld_library_path = os.environ['LD_LIBRARY_PATH']
libdirs = [x fo... | python | def get_system_python_library():
"""
FIXME; hacky way of finding python library. Not cross platform yet.
"""
import os
import utool as ut
from os.path import basename, realpath
pyname = basename(realpath(sys.executable))
ld_library_path = os.environ['LD_LIBRARY_PATH']
libdirs = [x fo... | [
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Erotemic/utool | utool/util_cplat.py | get_dynlib_dependencies | def get_dynlib_dependencies(lib_path):
"""
Executes tools for inspecting dynamic library dependencies depending on the
current platform.
"""
if LINUX:
ldd_fpath = '/usr/bin/ldd'
depend_out, depend_err, ret = cmd(ldd_fpath, lib_path, verbose=False)
elif DARWIN:
otool_fpath... | python | def get_dynlib_dependencies(lib_path):
"""
Executes tools for inspecting dynamic library dependencies depending on the
current platform.
"""
if LINUX:
ldd_fpath = '/usr/bin/ldd'
depend_out, depend_err, ret = cmd(ldd_fpath, lib_path, verbose=False)
elif DARWIN:
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Erotemic/utool | utool/util_cplat.py | startfile | def startfile(fpath, detatch=True, quote=False, verbose=False, quiet=True):
""" Uses default program defined by the system to open a file.
References:
http://stackoverflow.com/questions/2692873/quote-posix-shell-special-characters-in-python-output
"""
print('[cplat] startfile(%r)' % fpath)
... | python | def startfile(fpath, detatch=True, quote=False, verbose=False, quiet=True):
""" Uses default program defined by the system to open a file.
References:
http://stackoverflow.com/questions/2692873/quote-posix-shell-special-characters-in-python-output
"""
print('[cplat] startfile(%r)' % fpath)
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Erotemic/utool | utool/util_cplat.py | view_directory | def view_directory(dname=None, fname=None, verbose=True):
"""
View a directory in the operating system file browser. Currently supports
windows explorer, mac open, and linux nautlius.
Args:
dname (str): directory name
fname (str): a filename to select in the directory (nautlius only)
... | python | def view_directory(dname=None, fname=None, verbose=True):
"""
View a directory in the operating system file browser. Currently supports
windows explorer, mac open, and linux nautlius.
Args:
dname (str): directory name
fname (str): a filename to select in the directory (nautlius only)
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Erotemic/utool | utool/util_cplat.py | platform_cache_dir | def platform_cache_dir():
"""
Returns a directory which should be writable for any application
This should be used for temporary deletable data.
"""
if WIN32: # nocover
dpath_ = '~/AppData/Local'
elif LINUX: # nocover
dpath_ = '~/.cache'
elif DARWIN: # nocover
dpat... | python | def platform_cache_dir():
"""
Returns a directory which should be writable for any application
This should be used for temporary deletable data.
"""
if WIN32: # nocover
dpath_ = '~/AppData/Local'
elif LINUX: # nocover
dpath_ = '~/.cache'
elif DARWIN: # nocover
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Erotemic/utool | utool/util_cplat.py | __parse_cmd_args | def __parse_cmd_args(args, sudo, shell):
"""
When shell is True, Popen will only accept strings. No tuples
Shell really should not be true.
Returns:
args suitable for subprocess.Popen
I'm not quite sure what those are yet. Plain old string seem to work
well? But I remember need... | python | def __parse_cmd_args(args, sudo, shell):
"""
When shell is True, Popen will only accept strings. No tuples
Shell really should not be true.
Returns:
args suitable for subprocess.Popen
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Erotemic/utool | utool/util_cplat.py | cmd2 | def cmd2(command, shell=False, detatch=False, verbose=False, verbout=None):
"""
Trying to clean up cmd
Args:
command (str): string command
shell (bool): if True, process is run in shell
detatch (bool): if True, process is run in background
verbose (int): verbosity mode
... | python | def cmd2(command, shell=False, detatch=False, verbose=False, verbout=None):
"""
Trying to clean up cmd
Args:
command (str): string command
shell (bool): if True, process is run in shell
detatch (bool): if True, process is run in background
verbose (int): verbosity mode
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Erotemic/utool | utool/util_cplat.py | search_env_paths | def search_env_paths(fname, key_list=None, verbose=None):
r"""
Searches your PATH to see if fname exists
Args:
fname (str): file name to search for (can be glob pattern)
CommandLine:
python -m utool search_env_paths --fname msvcr*.dll
python -m utool search_env_paths --fname '*... | python | def search_env_paths(fname, key_list=None, verbose=None):
r"""
Searches your PATH to see if fname exists
Args:
fname (str): file name to search for (can be glob pattern)
CommandLine:
python -m utool search_env_paths --fname msvcr*.dll
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Erotemic/utool | utool/util_cplat.py | change_term_title | def change_term_title(title):
"""
only works on unix systems only tested on Ubuntu GNOME changes text on
terminal title for identifying debugging tasks.
The title will remain until python exists
Args:
title (str):
References:
http://stackoverflow.com/questions/5343265/setting-... | python | def change_term_title(title):
"""
only works on unix systems only tested on Ubuntu GNOME changes text on
terminal title for identifying debugging tasks.
The title will remain until python exists
Args:
title (str):
References:
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Erotemic/utool | utool/util_cplat.py | unload_module | def unload_module(modname):
"""
WARNING POTENTIALLY DANGEROUS AND MAY NOT WORK
References:
http://stackoverflow.com/questions/437589/how-do-i-unload-reload-a-python-module
CommandLine:
python -m utool.util_cplat --test-unload_module
Example:
>>> # DISABLE_DOCTEST
>... | python | def unload_module(modname):
"""
WARNING POTENTIALLY DANGEROUS AND MAY NOT WORK
References:
http://stackoverflow.com/questions/437589/how-do-i-unload-reload-a-python-module
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python -m utool.util_cplat --test-unload_module
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>>> # DISABLE_DOCTEST
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glormph/msstitch | src/app/actions/shared/pepprot_isoquant.py | base_add_isoquant_data | def base_add_isoquant_data(features, quantfeatures, acc_col, quantacc_col,
quantfields):
"""Generic function that takes a peptide or protein table and adds
quant data from ANOTHER such table."""
quant_map = get_quantmap(quantfeatures, quantacc_col, quantfields)
for feature in ... | python | def base_add_isoquant_data(features, quantfeatures, acc_col, quantacc_col,
quantfields):
"""Generic function that takes a peptide or protein table and adds
quant data from ANOTHER such table."""
quant_map = get_quantmap(quantfeatures, quantacc_col, quantfields)
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glormph/msstitch | src/app/actions/shared/pepprot_isoquant.py | get_quantmap | def get_quantmap(features, acc_col, quantfields):
"""Runs through proteins that are in a quanted protein table, extracts
and maps their information based on the quantfields list input.
Map is a dict with protein_accessions as keys."""
qmap = {}
for feature in features:
feat_acc = feature.pop... | python | def get_quantmap(features, acc_col, quantfields):
"""Runs through proteins that are in a quanted protein table, extracts
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qmap = {}
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Erotemic/utool | utool/util_gridsearch.py | partition_varied_cfg_list | def partition_varied_cfg_list(cfg_list, default_cfg=None, recursive=False):
r"""
Separates varied from non-varied parameters in a list of configs
TODO: partition nested configs
CommandLine:
python -m utool.util_gridsearch --exec-partition_varied_cfg_list:0
Example:
>>> # ENABLE_DO... | python | def partition_varied_cfg_list(cfg_list, default_cfg=None, recursive=False):
r"""
Separates varied from non-varied parameters in a list of configs
TODO: partition nested configs
CommandLine:
python -m utool.util_gridsearch --exec-partition_varied_cfg_list:0
Example:
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Erotemic/utool | utool/util_gridsearch.py | get_cfg_lbl | def get_cfg_lbl(cfg, name=None, nonlbl_keys=INTERNAL_CFGKEYS, key_order=None,
with_name=True, default_cfg=None, sep=''):
r"""
Formats a flat configuration dict into a short string label. This is useful
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Args:
cfg (dict):
name (str): (... | python | def get_cfg_lbl(cfg, name=None, nonlbl_keys=INTERNAL_CFGKEYS, key_order=None,
with_name=True, default_cfg=None, sep=''):
r"""
Formats a flat configuration dict into a short string label. This is useful
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Erotemic/utool | utool/util_gridsearch.py | parse_cfgstr_list2 | def parse_cfgstr_list2(cfgstr_list, named_defaults_dict=None, cfgtype=None,
alias_keys=None, valid_keys=None, expand_nested=True,
strict=True, special_join_dict=None, is_nestedcfgtype=False,
metadata=None):
r"""
Parses config strings. By looki... | python | def parse_cfgstr_list2(cfgstr_list, named_defaults_dict=None, cfgtype=None,
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strict=True, special_join_dict=None, is_nestedcfgtype=False,
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Erotemic/utool | utool/util_gridsearch.py | grid_search_generator | def grid_search_generator(grid_basis=[], *args, **kwargs):
r"""
Iteratively yeilds individual configuration points
inside a defined basis.
Args:
grid_basis (list): a list of 2-component tuple. The named tuple looks
like this:
CommandLine:
python -m utool.util_gridsearch... | python | def grid_search_generator(grid_basis=[], *args, **kwargs):
r"""
Iteratively yeilds individual configuration points
inside a defined basis.
Args:
grid_basis (list): a list of 2-component tuple. The named tuple looks
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CommandLine:
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CommandLine:
python -m utool.util_gridsearch --test-grid_search_generator
Example:
>>> # ENABL... | [
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Erotemic/utool | utool/util_gridsearch.py | get_cfgdict_list_subset | def get_cfgdict_list_subset(cfgdict_list, keys):
r"""
returns list of unique dictionaries only with keys specified in keys
Args:
cfgdict_list (list):
keys (list):
Returns:
list: cfglbl_list
CommandLine:
python -m utool.util_gridsearch --test-get_cfgdict_list_subset... | python | def get_cfgdict_list_subset(cfgdict_list, keys):
r"""
returns list of unique dictionaries only with keys specified in keys
Args:
cfgdict_list (list):
keys (list):
Returns:
list: cfglbl_list
CommandLine:
python -m utool.util_gridsearch --test-get_cfgdict_list_subset... | [
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Erotemic/utool | utool/util_gridsearch.py | constrain_cfgdict_list | def constrain_cfgdict_list(cfgdict_list_, constraint_func):
""" constrains configurations and removes duplicates """
cfgdict_list = []
for cfg_ in cfgdict_list_:
cfg = cfg_.copy()
if constraint_func(cfg) is not False and len(cfg) > 0:
if cfg not in cfgdict_list:
c... | python | def constrain_cfgdict_list(cfgdict_list_, constraint_func):
""" constrains configurations and removes duplicates """
cfgdict_list = []
for cfg_ in cfgdict_list_:
cfg = cfg_.copy()
if constraint_func(cfg) is not False and len(cfg) > 0:
if cfg not in cfgdict_list:
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Erotemic/utool | utool/util_gridsearch.py | make_cfglbls | def make_cfglbls(cfgdict_list, varied_dict):
""" Show only the text in labels that mater from the cfgdict """
import textwrap
wrapper = textwrap.TextWrapper(width=50)
cfglbl_list = []
for cfgdict_ in cfgdict_list:
cfgdict = cfgdict_.copy()
for key in six.iterkeys(cfgdict_):
... | python | def make_cfglbls(cfgdict_list, varied_dict):
""" Show only the text in labels that mater from the cfgdict """
import textwrap
wrapper = textwrap.TextWrapper(width=50)
cfglbl_list = []
for cfgdict_ in cfgdict_list:
cfgdict = cfgdict_.copy()
for key in six.iterkeys(cfgdict_):
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Erotemic/utool | utool/util_gridsearch.py | gridsearch_timer | def gridsearch_timer(func_list, args_list, niters=None, **searchkw):
"""
Times a series of functions on a series of inputs
args_list is a list should vary the input sizes
can also be a func that take a count param
items in args_list list or returned by the func should be a tuple so it can be
u... | python | def gridsearch_timer(func_list, args_list, niters=None, **searchkw):
"""
Times a series of functions on a series of inputs
args_list is a list should vary the input sizes
can also be a func that take a count param
items in args_list list or returned by the func should be a tuple so it can be
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args_list is a list should vary the input sizes
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CommandLine:
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Thermondo/django-heroku-connect | heroku_connect/utils.py | get_mapping | def get_mapping(version=1, exported_at=None, app_name=None):
"""
Return Heroku Connect mapping for the entire project.
Args:
version (int): Version of the Heroku Connect mapping, default: ``1``.
exported_at (datetime.datetime): Time the export was created, default is ``now()``.
app_... | python | def get_mapping(version=1, exported_at=None, app_name=None):
"""
Return Heroku Connect mapping for the entire project.
Args:
version (int): Version of the Heroku Connect mapping, default: ``1``.
exported_at (datetime.datetime): Time the export was created, default is ``now()``.
app_... | [
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Thermondo/django-heroku-connect | heroku_connect/utils.py | get_heroku_connect_models | def get_heroku_connect_models():
"""
Return all registered Heroku Connect Models.
Returns:
(Iterator):
All registered models that are subclasses of `.HerokuConnectModel`.
Abstract models are excluded, since they are not registered.
"""
from django.apps import apps
... | python | def get_heroku_connect_models():
"""
Return all registered Heroku Connect Models.
Returns:
(Iterator):
All registered models that are subclasses of `.HerokuConnectModel`.
Abstract models are excluded, since they are not registered.
"""
from django.apps import apps
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Thermondo/django-heroku-connect | heroku_connect/utils.py | create_heroku_connect_schema | def create_heroku_connect_schema(using=DEFAULT_DB_ALIAS):
"""
Create Heroku Connect schema.
Note:
This function is only meant to be used for local development.
In a production environment the schema will be created by
Heroku Connect.
Args:
using (str): Alias for databas... | python | def create_heroku_connect_schema(using=DEFAULT_DB_ALIAS):
"""
Create Heroku Connect schema.
Note:
This function is only meant to be used for local development.
In a production environment the schema will be created by
Heroku Connect.
Args:
using (str): Alias for databas... | [
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Thermondo/django-heroku-connect | heroku_connect/utils.py | get_connections | def get_connections(app):
"""
Return all Heroku Connect connections setup with the given application.
For more details check the link -
https://devcenter.heroku.com/articles/heroku-connect-api#step-4-retrieve-the-new-connection-s-id
Sample response from the API call is below::
{
... | python | def get_connections(app):
"""
Return all Heroku Connect connections setup with the given application.
For more details check the link -
https://devcenter.heroku.com/articles/heroku-connect-api#step-4-retrieve-the-new-connection-s-id
Sample response from the API call is below::
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For more details check the link -
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Sample response from the API call is below::
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Thermondo/django-heroku-connect | heroku_connect/utils.py | get_connection | def get_connection(connection_id, deep=False):
"""
Get Heroku Connection connection information.
For more details check the link -
https://devcenter.heroku.com/articles/heroku-connect-api#step-8-monitor-the-connection-and-mapping-status
Sample response from API call is below::
{
... | python | def get_connection(connection_id, deep=False):
"""
Get Heroku Connection connection information.
For more details check the link -
https://devcenter.heroku.com/articles/heroku-connect-api#step-8-monitor-the-connection-and-mapping-status
Sample response from API call is below::
{
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For more details check the link -
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Sample response from API call is below::
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Thermondo/django-heroku-connect | heroku_connect/utils.py | import_mapping | def import_mapping(connection_id, mapping):
"""
Import Heroku Connection mapping for given connection.
Args:
connection_id (str): Heroku Connection connection ID.
mapping (dict): Heroku Connect mapping.
Raises:
requests.HTTPError: If an error occurs uploading the mapping.
... | python | def import_mapping(connection_id, mapping):
"""
Import Heroku Connection mapping for given connection.
Args:
connection_id (str): Heroku Connection connection ID.
mapping (dict): Heroku Connect mapping.
Raises:
requests.HTTPError: If an error occurs uploading the mapping.
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Thermondo/django-heroku-connect | heroku_connect/utils.py | link_connection_to_account | def link_connection_to_account(app):
"""
Link the connection to your Heroku user account.
https://devcenter.heroku.com/articles/heroku-connect-api#step-3-link-the-connection-to-your-heroku-user-account
"""
url = os.path.join(settings.HEROKU_CONNECT_API_ENDPOINT, 'users', 'me', 'apps', app, 'auth')
... | python | def link_connection_to_account(app):
"""
Link the connection to your Heroku user account.
https://devcenter.heroku.com/articles/heroku-connect-api#step-3-link-the-connection-to-your-heroku-user-account
"""
url = os.path.join(settings.HEROKU_CONNECT_API_ENDPOINT, 'users', 'me', 'apps', app, 'auth')
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glormph/msstitch | src/app/readers/spectra.py | fetch_cvparams_values_from_subel | def fetch_cvparams_values_from_subel(base, subelname, paramnames, ns):
"""Searches a base element for subelement by name, then takes the
cvParams of that subelement and returns the values as a list
for the paramnames that match. Value order in list equals input
paramnames order."""
sub_el = baseread... | python | def fetch_cvparams_values_from_subel(base, subelname, paramnames, ns):
"""Searches a base element for subelement by name, then takes the
cvParams of that subelement and returns the values as a list
for the paramnames that match. Value order in list equals input
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glormph/msstitch | src/app/lookups/sqlite/base.py | DatabaseConnection.create_tables | def create_tables(self, tables):
"""Creates database tables in sqlite lookup db"""
cursor = self.get_cursor()
for table in tables:
columns = mslookup_tables[table]
try:
cursor.execute('CREATE TABLE {0}({1})'.format(
table, ', '.join(col... | python | def create_tables(self, tables):
"""Creates database tables in sqlite lookup db"""
cursor = self.get_cursor()
for table in tables:
columns = mslookup_tables[table]
try:
cursor.execute('CREATE TABLE {0}({1})'.format(
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glormph/msstitch | src/app/lookups/sqlite/base.py | DatabaseConnection.connect | def connect(self, fn):
"""SQLite connect method initialize db"""
self.conn = sqlite3.connect(fn)
cur = self.get_cursor()
cur.execute('PRAGMA page_size=4096')
cur.execute('PRAGMA FOREIGN_KEYS=ON')
cur.execute('PRAGMA cache_size=10000')
cur.execute('PRAGMA journal_m... | python | def connect(self, fn):
"""SQLite connect method initialize db"""
self.conn = sqlite3.connect(fn)
cur = self.get_cursor()
cur.execute('PRAGMA page_size=4096')
cur.execute('PRAGMA FOREIGN_KEYS=ON')
cur.execute('PRAGMA cache_size=10000')
cur.execute('PRAGMA journal_m... | [
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glormph/msstitch | src/app/lookups/sqlite/base.py | DatabaseConnection.index_column | def index_column(self, index_name, table, column):
"""Called by interfaces to index specific column in table"""
cursor = self.get_cursor()
try:
cursor.execute(
'CREATE INDEX {0} on {1}({2})'.format(index_name, table, column))
except sqlite3.OperationalError as... | python | def index_column(self, index_name, table, column):
"""Called by interfaces to index specific column in table"""
cursor = self.get_cursor()
try:
cursor.execute(
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glormph/msstitch | src/app/lookups/sqlite/base.py | DatabaseConnection.get_sql_select | def get_sql_select(self, columns, table, distinct=False):
"""Creates and returns an SQL SELECT statement"""
sql = 'SELECT {0} {1} FROM {2}'
dist = {True: 'DISTINCT', False: ''}[distinct]
return sql.format(dist, ', '.join(columns), table) | python | def get_sql_select(self, columns, table, distinct=False):
"""Creates and returns an SQL SELECT statement"""
sql = 'SELECT {0} {1} FROM {2}'
dist = {True: 'DISTINCT', False: ''}[distinct]
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glormph/msstitch | src/app/lookups/sqlite/base.py | DatabaseConnection.store_many | def store_many(self, sql, values):
"""Abstraction over executemany method"""
cursor = self.get_cursor()
cursor.executemany(sql, values)
self.conn.commit() | python | def store_many(self, sql, values):
"""Abstraction over executemany method"""
cursor = self.get_cursor()
cursor.executemany(sql, values)
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glormph/msstitch | src/app/lookups/sqlite/base.py | DatabaseConnection.execute_sql | def execute_sql(self, sql):
"""Executes SQL and returns cursor for it"""
cursor = self.get_cursor()
cursor.execute(sql)
return cursor | python | def execute_sql(self, sql):
"""Executes SQL and returns cursor for it"""
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cursor.execute(sql)
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glormph/msstitch | src/app/lookups/sqlite/base.py | ResultLookupInterface.get_mzmlfile_map | def get_mzmlfile_map(self):
"""Returns dict of mzmlfilenames and their db ids"""
cursor = self.get_cursor()
cursor.execute('SELECT mzmlfile_id, mzmlfilename FROM mzmlfiles')
return {fn: fnid for fnid, fn in cursor.fetchall()} | python | def get_mzmlfile_map(self):
"""Returns dict of mzmlfilenames and their db ids"""
cursor = self.get_cursor()
cursor.execute('SELECT mzmlfile_id, mzmlfilename FROM mzmlfiles')
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glormph/msstitch | src/app/lookups/sqlite/base.py | ResultLookupInterface.get_spectra_id | def get_spectra_id(self, fn_id, retention_time=None, scan_nr=None):
"""Returns spectra id for spectra filename and retention time"""
cursor = self.get_cursor()
sql = 'SELECT spectra_id FROM mzml WHERE mzmlfile_id=? '
values = [fn_id]
if retention_time is not None:
sql... | python | def get_spectra_id(self, fn_id, retention_time=None, scan_nr=None):
"""Returns spectra id for spectra filename and retention time"""
cursor = self.get_cursor()
sql = 'SELECT spectra_id FROM mzml WHERE mzmlfile_id=? '
values = [fn_id]
if retention_time is not None:
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Erotemic/utool | utool/experimental/pandas_highlight.py | to_string_monkey | def to_string_monkey(df, highlight_cols=None, latex=False):
""" monkey patch to pandas to highlight the maximum value in specified
cols of a row
Example:
>>> from utool.experimental.pandas_highlight import *
>>> import pandas as pd
>>> df = pd.DataFrame(
>>> np.array([[... | python | def to_string_monkey(df, highlight_cols=None, latex=False):
""" monkey patch to pandas to highlight the maximum value in specified
cols of a row
Example:
>>> from utool.experimental.pandas_highlight import *
>>> import pandas as pd
>>> df = pd.DataFrame(
>>> np.array([[... | [
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neithere/monk | monk/validators.py | translate | def translate(value):
"""
Translates given schema from "pythonic" syntax to a validator.
Usage::
>>> translate(str)
IsA(str)
>>> translate('hello')
IsA(str, default='hello')
"""
if isinstance(value, BaseValidator):
return value
if value is None:
... | python | def translate(value):
"""
Translates given schema from "pythonic" syntax to a validator.
Usage::
>>> translate(str)
IsA(str)
>>> translate('hello')
IsA(str, default='hello')
"""
if isinstance(value, BaseValidator):
return value
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neithere/monk | monk/validators.py | DictOf._merge | def _merge(self, value):
"""
Returns a dictionary based on `value` with each value recursively
merged with `spec`.
"""
if value is not None and not isinstance(value, dict):
# bogus value; will not pass validation but should be preserved
return value
... | python | def _merge(self, value):
"""
Returns a dictionary based on `value` with each value recursively
merged with `spec`.
"""
if value is not None and not isinstance(value, dict):
# bogus value; will not pass validation but should be preserved
return value
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Erotemic/utool | utool/_internal/win32_send_keys.py | handle_code | def handle_code(code):
"Handle a key or sequence of keys in braces"
code_keys = []
# it is a known code (e.g. {DOWN}, {ENTER}, etc)
if code in CODES:
code_keys.append(VirtualKeyAction(CODES[code]))
# it is an escaped modifier e.g. {%}, {^}, {+}
elif len(code) == 1:
code_keys.ap... | python | def handle_code(code):
"Handle a key or sequence of keys in braces"
code_keys = []
# it is a known code (e.g. {DOWN}, {ENTER}, etc)
if code in CODES:
code_keys.append(VirtualKeyAction(CODES[code]))
# it is an escaped modifier e.g. {%}, {^}, {+}
elif len(code) == 1:
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Erotemic/utool | utool/_internal/win32_send_keys.py | parse_keys | def parse_keys(string,
with_spaces = False,
with_tabs = False,
with_newlines = False,
modifiers = None):
"Return the parsed keys"
keys = []
if not modifiers:
modifiers = []
index = 0
while index < len(string):
c = stri... | python | def parse_keys(string,
with_spaces = False,
with_tabs = False,
with_newlines = False,
modifiers = None):
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keys = []
if not modifiers:
modifiers = []
index = 0
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Erotemic/utool | utool/_internal/win32_send_keys.py | SendKeys | def SendKeys(keys,
pause=0.05,
with_spaces=False,
with_tabs=False,
with_newlines=False,
turn_off_numlock=True):
"Parse the keys and type them"
keys = parse_keys(keys, with_spaces, with_tabs, with_newlines)
for k in keys:
k.Run()
... | python | def SendKeys(keys,
pause=0.05,
with_spaces=False,
with_tabs=False,
with_newlines=False,
turn_off_numlock=True):
"Parse the keys and type them"
keys = parse_keys(keys, with_spaces, with_tabs, with_newlines)
for k in keys:
k.Run()
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Erotemic/utool | utool/_internal/win32_send_keys.py | main | def main():
"Send some test strings"
actions = """
{LWIN}
{PAUSE .25}
r
{PAUSE .25}
Notepad.exe{ENTER}
{PAUSE 1}
Hello{SPACE}World!
{PAUSE 1}
%{F4}
{PAUSE .25}
n
"""
SendKeys(actions, pause = .1)
keys = par... | python | def main():
"Send some test strings"
actions = """
{LWIN}
{PAUSE .25}
r
{PAUSE .25}
Notepad.exe{ENTER}
{PAUSE 1}
Hello{SPACE}World!
{PAUSE 1}
%{F4}
{PAUSE .25}
n
"""
SendKeys(actions, pause = .1)
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Erotemic/utool | utool/_internal/win32_send_keys.py | KeyAction.GetInput | def GetInput(self):
"Build the INPUT structure for the action"
actions = 1
# if both up and down
if self.up and self.down:
actions = 2
inputs = (INPUT * actions)()
vk, scan, flags = self._get_key_info()
for inp in inputs:
inp.type = INPU... | python | def GetInput(self):
"Build the INPUT structure for the action"
actions = 1
# if both up and down
if self.up and self.down:
actions = 2
inputs = (INPUT * actions)()
vk, scan, flags = self._get_key_info()
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Erotemic/utool | utool/_internal/win32_send_keys.py | KeyAction.Run | def Run(self):
"Execute the action"
inputs = self.GetInput()
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len(inputs),
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ctypes.sizeof(INPUT)) | python | def Run(self):
"Execute the action"
inputs = self.GetInput()
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Erotemic/utool | utool/_internal/win32_send_keys.py | KeyAction._get_down_up_string | def _get_down_up_string(self):
"""Return a string that will show whether the string is up or down
return 'down' if the key is a press only
return 'up' if the key is up only
return '' if the key is up & down (as default)
"""
down_up = ""
if not (self.down and self... | python | def _get_down_up_string(self):
"""Return a string that will show whether the string is up or down
return 'down' if the key is a press only
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return '' if the key is up & down (as default)
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"dow... | Return a string that will show whether the string is up or down
return 'down' if the key is a press only
return 'up' if the key is up only
return '' if the key is up & down (as default) | [
"Return",
"a",
"string",
"that",
"will",
"show",
"whether",
"the",
"string",
"is",
"up",
"or",
"down"
] | 3b27e1f4e6e6fb23cd8744af7b7195b57d99e03a | https://github.com/Erotemic/utool/blob/3b27e1f4e6e6fb23cd8744af7b7195b57d99e03a/utool/_internal/win32_send_keys.py#L344-L357 | train |
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