repo stringlengths 1 191 ⌀ | file stringlengths 23 351 | code stringlengths 0 5.32M | file_length int64 0 5.32M | avg_line_length float64 0 2.9k | max_line_length int64 0 288k | extension_type stringclasses 1
value |
|---|---|---|---|---|---|---|
cobs | cobs-master/cobs/test/TestConservationSumAverage.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 2,495 | 28.364706 | 123 | java |
cobs | cobs-master/cobs/test/TestResultsFileLine.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 6,535 | 30.728155 | 133 | java |
cobs | cobs-master/cobs/test/TestMcBascAverage.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 2,758 | 29.318681 | 123 | java |
cobs | cobs-master/cobs/test/TestMcBasc.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 5,466 | 35.205298 | 118 | java |
cobs | cobs-master/cobs/test/FactorialsTest.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 3,455 | 30.135135 | 94 | java |
cobs | cobs-master/cobs/test/TestNumberOfElements.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 2,847 | 30.644444 | 122 | java |
cobs | cobs-master/cobs/scripts/DownloadPDBFiles.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 1,183 | 29.358974 | 110 | java |
cobs | cobs-master/cobs/scripts/WriteTruncatedPfamAlignments.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 2,459 | 27.604651 | 94 | java |
cobs | cobs-master/cobs/scripts/PdbDownloadFromHTTP.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 2,133 | 26.012658 | 104 | java |
cobs | cobs-master/cobs/covariance/algorithms/ELSCCovarianceSubAlignment.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 5,763 | 29.020833 | 113 | java |
cobs | cobs-master/cobs/covariance/algorithms/MICovariance.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 5,998 | 25.311404 | 99 | java |
cobs | cobs-master/cobs/covariance/algorithms/RemainderClass.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 1,271 | 23.941176 | 74 | java |
cobs | cobs-master/cobs/covariance/algorithms/JavaSCA.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 6,124 | 26.222222 | 102 | java |
cobs | cobs-master/cobs/covariance/algorithms/McBASCCovariance.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 10,200 | 29.27003 | 113 | java |
cobs | cobs-master/cobs/covariance/algorithms/ConservationGenerator.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 767 | 35.571429 | 74 | java |
cobs | cobs-master/cobs/covariance/algorithms/OmesCovariance.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 8,070 | 26.083893 | 102 | java |
cobs | cobs-master/cobs/covariance/algorithms/ConservationSum.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 3,132 | 24.471545 | 97 | java |
cobs | cobs-master/cobs/covariance/algorithms/ScoreGenerator.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 1,545 | 33.355556 | 97 | java |
cobs | cobs-master/cobs/covariance/algorithms/RandomScore.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 2,185 | 22.010526 | 80 | java |
cobs | cobs-master/cobs/covariance/algorithms/ELSCCovariance.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 2,773 | 24.925234 | 87 | java |
cobs | cobs-master/cobs/covariance/algorithms/AbsoluteValueFileScoreGenerator.java |
/**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* ... | 1,246 | 26.711111 | 93 | java |
cobs | cobs-master/cobs/covariance/algorithms/FileScoreGenerator.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 3,334 | 23.343066 | 124 | java |
cobs | cobs-master/cobs/covariance/algorithms/PNormalize.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 2,766 | 24.859813 | 92 | java |
cobs | cobs-master/cobs/covariance/datacontainers/PdbFileWrapper.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 2,349 | 20.363636 | 77 | java |
cobs | cobs-master/cobs/covariance/datacontainers/PdbResidue.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 5,649 | 20.899225 | 95 | java |
cobs | cobs-master/cobs/covariance/datacontainers/PdbChain.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 2,486 | 22.242991 | 74 | java |
cobs | cobs-master/cobs/covariance/datacontainers/PairColors.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 3,000 | 21.066176 | 106 | java |
cobs | cobs-master/cobs/covariance/datacontainers/PdbAtom.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 2,776 | 23.147826 | 87 | java |
cobs | cobs-master/cobs/covariance/datacontainers/SangerPDBpfamMappingSingleLine.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 4,856 | 28.083832 | 151 | java |
cobs | cobs-master/cobs/covariance/datacontainers/ReferenceSequenceResidue.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 6,077 | 21.428044 | 101 | java |
cobs | cobs-master/cobs/covariance/datacontainers/ReferenceSequence.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 2,640 | 27.706522 | 102 | java |
cobs | cobs-master/cobs/covariance/datacontainers/AlignmentLine.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 1,830 | 22.779221 | 74 | java |
cobs | cobs-master/cobs/covariance/datacontainers/Alignment.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 27,536 | 24.66356 | 110 | java |
cobs | cobs-master/cobs/covariance/datacontainers/SequenceFeature.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 1,242 | 22.018519 | 77 | java |
cobs | cobs-master/cobs/covariance/datacontainers/AlignmentSubScore.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 2,896 | 22.362903 | 94 | java |
cobs | cobs-master/cobs/covariance/datacontainers/ClustalLine.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 1,573 | 24.387097 | 74 | java |
cobs | cobs-master/cobs/covariance/parsers/PdbParser.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 5,965 | 24.279661 | 90 | java |
cobs | cobs-master/cobs/covariance/parsers/HitScores.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 12,960 | 23.877159 | 134 | java |
cobs | cobs-master/cobs/covariance/parsers/PFamPdbAnnotationParser.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 3,340 | 24.120301 | 93 | java |
cobs | cobs-master/cobs/covariance/parsers/PfamToPDBBlastResults.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 5,664 | 24.633484 | 99 | java |
cobs | cobs-master/cobs/covariance/parsers/PfamParser.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 4,602 | 26.39881 | 105 | java |
cobs | cobs-master/cobs/covariance/parsers/FastaSequence.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 10,806 | 23.34009 | 95 | java |
cobs | cobs-master/cobs/preparePfamToPDBBlast/ExaminePDBs.java |
/**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* ... | 2,130 | 28.597222 | 139 | java |
cobs | cobs-master/cobs/preparePfamToPDBBlast/BlastPDBToPfam.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 4,665 | 29.900662 | 159 | java |
cobs | cobs-master/cobs/preparePfamToPDBBlast/WriteElementsBasedOnCurrentPdbCoordinates.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 2,431 | 33.253521 | 99 | java |
cobs | cobs-master/cobs/preparePfamToPDBBlast/ExamineAlignments.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 2,665 | 30 | 108 | java |
cobs | cobs-master/cobs/preparePfamToPDBBlast/PfamToPbdWithHelicesAndSheets.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 2,897 | 22.184 | 108 | java |
cobs | cobs-master/cobs/preparePfamToPDBBlast/PfamToPDB.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 4,479 | 23.480874 | 105 | java |
cobs | cobs-master/cobs/utils/MapResiduesToIndex.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 4,291 | 23.11236 | 136 | java |
cobs | cobs-master/cobs/utils/ProcessWrapper.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 1,212 | 24.808511 | 86 | java |
cobs | cobs-master/cobs/utils/OrderedSequenceRange.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 2,119 | 22.820225 | 74 | java |
cobs | cobs-master/cobs/utils/TabReader.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 1,979 | 25.4 | 74 | java |
cobs | cobs-master/cobs/utils/Avevar.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 2,575 | 18.664122 | 80 | java |
cobs | cobs-master/cobs/utils/TTest.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 7,553 | 20.644699 | 112 | java |
cobs | cobs-master/cobs/utils/Pearson.java |
/**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* ... | 6,864 | 27.966245 | 95 | java |
cobs | cobs-master/cobs/utils/SequenceUtils.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 6,195 | 22.033457 | 103 | java |
cobs | cobs-master/cobs/utils/Factorials.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 4,732 | 21.754808 | 83 | java |
cobs | cobs-master/cobs/utils/ConfigReader.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 5,173 | 26.231579 | 120 | java |
cobs | cobs-master/cobs/gocAlgorithms/COBSFromNW.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 4,982 | 27.637931 | 83 | java |
cobs | cobs-master/cobs/gocAlgorithms/COBS.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 4,931 | 28.011765 | 133 | java |
cobs | cobs-master/cobs/gocAlgorithms/AverageScoreGenerator.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 2,041 | 23.902439 | 81 | java |
cobs | cobs-master/cobs/gocAlgorithms/AverageMcBASC.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 2,049 | 23.698795 | 88 | java |
cobs | cobs-master/cobs/gocAlgorithms/GroupOfColumnsInterface.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 919 | 33.074074 | 114 | java |
cobs | cobs-master/cobs/gocAlgorithms/HelixSheetGroup.java | /**
* Authors: anthony.fodor@gmail.com kylekreth@alumni.nd.edu
*
* This code is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version,
* p... | 5,119 | 25.25641 | 118 | java |
CERMINE | CERMINE-master/cermine-tools/src/main/java/pl/edu/icm/cermine/evaluation/CrossvalidatingZoneClassificationEvaluator.java | /**
* This file is part of CERMINE project.
* Copyright (c) 2011-2018 ICM-UW
*
* CERMINE is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any... | 9,673 | 43.995349 | 194 | java |
CERMINE | CERMINE-master/cermine-tools/src/main/java/pl/edu/icm/cermine/evaluation/ReferenceParsingEvaluator.java | /**
* This file is part of CERMINE project.
* Copyright (c) 2011-2018 ICM-UW
*
* CERMINE is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any... | 7,963 | 37.288462 | 137 | java |
CERMINE | CERMINE-master/cermine-tools/src/main/java/pl/edu/icm/cermine/evaluation/SVMInitialClassificationEvaluator.java | /**
* This file is part of CERMINE project.
* Copyright (c) 2011-2018 ICM-UW
*
* CERMINE is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any... | 4,121 | 42.389474 | 220 | java |
CERMINE | CERMINE-master/cermine-tools/src/main/java/pl/edu/icm/cermine/evaluation/SVMBodyClassificationEvaluator.java | /**
* This file is part of CERMINE project.
* Copyright (c) 2011-2018 ICM-UW
*
* CERMINE is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any... | 4,423 | 41.951456 | 152 | java |
CERMINE | CERMINE-master/cermine-tools/src/main/java/pl/edu/icm/cermine/evaluation/ReferenceTokenClassificationEvaluator.java | /**
* This file is part of CERMINE project.
* Copyright (c) 2011-2018 ICM-UW
*
* CERMINE is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any... | 6,536 | 40.636943 | 137 | java |
CERMINE | CERMINE-master/cermine-tools/src/main/java/pl/edu/icm/cermine/evaluation/SVMMetadataClassificationEvaluator.java | /**
* This file is part of CERMINE project.
* Copyright (c) 2011-2018 ICM-UW
*
* CERMINE is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any... | 4,220 | 41.636364 | 152 | java |
CERMINE | CERMINE-master/cermine-tools/src/main/java/pl/edu/icm/cermine/evaluation/SegmentationEvaluator.java | /**
* This file is part of CERMINE project.
* Copyright (c) 2011-2018 ICM-UW
*
* CERMINE is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any... | 13,238 | 35.67313 | 109 | java |
CERMINE | CERMINE-master/cermine-tools/src/main/java/pl/edu/icm/cermine/evaluation/tools/NlmIterator.java | /**
* This file is part of CERMINE project.
* Copyright (c) 2011-2018 ICM-UW
*
* CERMINE is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any... | 4,329 | 32.828125 | 149 | java |
CERMINE | CERMINE-master/cermine-tools/src/main/java/pl/edu/icm/cermine/evaluation/tools/ClassificationResults.java | /**
* This file is part of CERMINE project.
* Copyright (c) 2011-2018 ICM-UW
*
* CERMINE is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any... | 12,676 | 40.563934 | 141 | java |
CERMINE | CERMINE-master/cermine-tools/src/main/java/pl/edu/icm/cermine/evaluation/tools/DocumentSetResult.java | /**
* This file is part of CERMINE project.
* Copyright (c) 2011-2018 ICM-UW
*
* CERMINE is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any... | 6,439 | 39.25 | 131 | java |
CERMINE | CERMINE-master/cermine-tools/src/main/java/pl/edu/icm/cermine/evaluation/tools/ListInformationResult.java | /**
* This file is part of CERMINE project.
* Copyright (c) 2011-2018 ICM-UW
*
* CERMINE is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any... | 6,105 | 29.227723 | 97 | java |
CERMINE | CERMINE-master/cermine-tools/src/main/java/pl/edu/icm/cermine/evaluation/tools/SingleInformationDocResult.java | /**
* This file is part of CERMINE project.
* Copyright (c) 2011-2018 ICM-UW
*
* CERMINE is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any... | 1,279 | 23.615385 | 78 | java |
CERMINE | CERMINE-master/cermine-tools/src/main/java/pl/edu/icm/cermine/evaluation/tools/EvalInformationType.java | /**
* This file is part of CERMINE project.
* Copyright (c) 2011-2018 ICM-UW
*
* CERMINE is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any... | 1,202 | 19.05 | 78 | java |
CERMINE | CERMINE-master/cermine-tools/src/main/java/pl/edu/icm/cermine/evaluation/tools/EvaluationUtils.java | /**
* This file is part of CERMINE project.
* Copyright (c) 2011-2018 ICM-UW
*
* CERMINE is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any... | 6,616 | 36.384181 | 162 | java |
CERMINE | CERMINE-master/cermine-tools/src/main/java/pl/edu/icm/cermine/evaluation/tools/NlmPair.java | /**
* This file is part of CERMINE project.
* Copyright (c) 2011-2018 ICM-UW
*
* CERMINE is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any... | 1,440 | 26.711538 | 78 | java |
CERMINE | CERMINE-master/cermine-tools/src/main/java/pl/edu/icm/cermine/evaluation/tools/DividedEvaluationSet.java | /**
* This file is part of CERMINE project.
* Copyright (c) 2011-2018 ICM-UW
*
* CERMINE is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any... | 3,359 | 40.481481 | 131 | java |
CERMINE | CERMINE-master/cermine-tools/src/main/java/pl/edu/icm/cermine/evaluation/tools/SimpleInformationResult.java | /**
* This file is part of CERMINE project.
* Copyright (c) 2011-2018 ICM-UW
*
* CERMINE is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any... | 3,862 | 27.404412 | 132 | java |
CERMINE | CERMINE-master/cermine-tools/src/main/java/pl/edu/icm/cermine/evaluation/tools/DateComparator.java | /**
* This file is part of CERMINE project.
* Copyright (c) 2011-2018 ICM-UW
*
* CERMINE is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any... | 2,265 | 36.147541 | 100 | java |
CERMINE | CERMINE-master/cermine-tools/src/main/java/pl/edu/icm/cermine/evaluation/tools/RelationInformationResult.java | /**
* This file is part of CERMINE project.
* Copyright (c) 2011-2018 ICM-UW
*
* CERMINE is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any... | 6,758 | 30.584112 | 125 | java |
CERMINE | CERMINE-master/cermine-tools/src/main/java/pl/edu/icm/cermine/evaluation/exception/EvaluationException.java | /**
* This file is part of CERMINE project.
* Copyright (c) 2011-2018 ICM-UW
*
* CERMINE is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any... | 1,363 | 29.311111 | 78 | java |
CERMINE | CERMINE-master/cermine-tools/src/main/java/pl/edu/icm/cermine/evaluation/systems/PdfExtractNlmEvaluator.java | /**
* This file is part of CERMINE project.
* Copyright (c) 2011-2018 ICM-UW
*
* CERMINE is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any... | 2,077 | 34.220339 | 93 | java |
CERMINE | CERMINE-master/cermine-tools/src/main/java/pl/edu/icm/cermine/evaluation/systems/GrobidBwmetaEvaluator.java | /**
* This file is part of CERMINE project.
* Copyright (c) 2011-2018 ICM-UW
*
* CERMINE is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any... | 2,518 | 37.166667 | 115 | java |
CERMINE | CERMINE-master/cermine-tools/src/main/java/pl/edu/icm/cermine/evaluation/systems/ParscitNlmEvaluator.java | /**
* This file is part of CERMINE project.
* Copyright (c) 2011-2018 ICM-UW
*
* CERMINE is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any... | 2,268 | 36.196721 | 108 | java |
CERMINE | CERMINE-master/cermine-tools/src/main/java/pl/edu/icm/cermine/evaluation/systems/PdfxNlmEvaluator.java | /**
* This file is part of CERMINE project.
* Copyright (c) 2011-2018 ICM-UW
*
* CERMINE is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any... | 2,216 | 35.344262 | 108 | java |
CERMINE | CERMINE-master/cermine-tools/src/main/java/pl/edu/icm/cermine/evaluation/systems/SystemEvaluator.java | /**
* This file is part of CERMINE project.
* Copyright (c) 2011-2018 ICM-UW
*
* CERMINE is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any... | 15,334 | 49.114379 | 137 | java |
CERMINE | CERMINE-master/cermine-tools/src/main/java/pl/edu/icm/cermine/evaluation/systems/CermineNlmEvaluator.java | /**
* This file is part of CERMINE project.
* Copyright (c) 2011-2018 ICM-UW
*
* CERMINE is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any... | 2,399 | 37.709677 | 115 | java |
CERMINE | CERMINE-master/cermine-tools/src/main/java/pl/edu/icm/cermine/evaluation/systems/PdfExtractBwmetaEvaluator.java | /**
* This file is part of CERMINE project.
* Copyright (c) 2011-2018 ICM-UW
*
* CERMINE is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any... | 2,093 | 34.491525 | 93 | java |
CERMINE | CERMINE-master/cermine-tools/src/main/java/pl/edu/icm/cermine/evaluation/systems/PdfxBwmetaEvaluator.java | /**
* This file is part of CERMINE project.
* Copyright (c) 2011-2018 ICM-UW
*
* CERMINE is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any... | 2,166 | 34.52459 | 90 | java |
CERMINE | CERMINE-master/cermine-tools/src/main/java/pl/edu/icm/cermine/evaluation/systems/CermineBwmetaEvaluator.java | /**
* This file is part of CERMINE project.
* Copyright (c) 2011-2018 ICM-UW
*
* CERMINE is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any... | 2,514 | 38.296875 | 115 | java |
CERMINE | CERMINE-master/cermine-tools/src/main/java/pl/edu/icm/cermine/evaluation/systems/ParscitBwmetaEvaluator.java | /**
* This file is part of CERMINE project.
* Copyright (c) 2011-2018 ICM-UW
*
* CERMINE is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any... | 2,221 | 34.83871 | 102 | java |
CERMINE | CERMINE-master/cermine-tools/src/main/java/pl/edu/icm/cermine/evaluation/systems/GrobidNlmEvaluator.java | /**
* This file is part of CERMINE project.
* Copyright (c) 2011-2018 ICM-UW
*
* CERMINE is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any... | 2,527 | 38.5 | 115 | java |
CERMINE | CERMINE-master/cermine-tools/src/main/java/pl/edu/icm/cermine/evaluation/transformers/PdfxToMetadataConverter.java | /**
* This file is part of CERMINE project.
* Copyright (c) 2011-2018 ICM-UW
*
* CERMINE is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any... | 3,506 | 37.538462 | 116 | java |
CERMINE | CERMINE-master/cermine-tools/src/main/java/pl/edu/icm/cermine/evaluation/transformers/PdfxToContentConverter.java | /**
* This file is part of CERMINE project.
* Copyright (c) 2011-2018 ICM-UW
*
* CERMINE is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any... | 2,900 | 34.814815 | 116 | java |
CERMINE | CERMINE-master/cermine-tools/src/main/java/pl/edu/icm/cermine/evaluation/transformers/NLMToContentConverter.java | /**
* This file is part of CERMINE project.
* Copyright (c) 2011-2018 ICM-UW
*
* CERMINE is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any... | 2,889 | 34.679012 | 116 | java |
CERMINE | CERMINE-master/cermine-tools/src/main/java/pl/edu/icm/cermine/evaluation/transformers/ElementToBibEntryConverter.java | /**
* This file is part of CERMINE project.
* Copyright (c) 2011-2018 ICM-UW
*
* CERMINE is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any... | 1,928 | 34.722222 | 108 | java |
CERMINE | CERMINE-master/cermine-tools/src/main/java/pl/edu/icm/cermine/evaluation/transformers/ParscitToDocumentReader.java | /**
* This file is part of CERMINE project.
* Copyright (c) 2011-2018 ICM-UW
*
* CERMINE is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any... | 4,439 | 40.886792 | 113 | java |
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