repo stringlengths 1 191 ⌀ | file stringlengths 23 351 | code stringlengths 0 5.32M | file_length int64 0 5.32M | avg_line_length float64 0 2.9k | max_line_length int64 0 288k | extension_type stringclasses 1
value |
|---|---|---|---|---|---|---|
null | jabref-main/src/main/java/org/jabref/logic/remote/server/RemoteListenerServerManager.java | package org.jabref.logic.remote.server;
import java.io.IOException;
import java.net.BindException;
import org.jabref.gui.JabRefExecutorService;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
/**
* Manages the TeleServerThread through typical life cycle methods.
* <p/>
* open -> start -> stop
* openAnd... | 2,278 | 27.848101 | 121 | java |
null | jabref-main/src/main/java/org/jabref/logic/remote/server/RemoteListenerServerThread.java | package org.jabref.logic.remote.server;
import java.io.IOException;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
/**
* This thread wrapper is required to be able to interrupt the remote listener server, e.g. when JabRef is closing down the server should shutdown as well.
*/
public class RemoteListenerS... | 1,003 | 28.529412 | 155 | java |
null | jabref-main/src/main/java/org/jabref/logic/remote/server/RemoteMessageHandler.java | package org.jabref.logic.remote.server;
@FunctionalInterface
public interface RemoteMessageHandler {
void handleCommandLineArguments(String[] message);
}
| 160 | 19.125 | 54 | java |
null | jabref-main/src/main/java/org/jabref/logic/search/DatabaseSearcher.java | package org.jabref.logic.search;
import java.util.Collections;
import java.util.List;
import java.util.Objects;
import java.util.stream.Collectors;
import org.jabref.model.database.BibDatabase;
import org.jabref.model.database.BibDatabases;
import org.jabref.model.entry.BibEntry;
import org.slf4j.Logger;
import org.... | 1,168 | 28.974359 | 121 | java |
null | jabref-main/src/main/java/org/jabref/logic/search/SearchQuery.java | package org.jabref.logic.search;
import java.util.Collections;
import java.util.EnumSet;
import java.util.List;
import java.util.Objects;
import java.util.Optional;
import java.util.regex.Pattern;
import java.util.stream.Collectors;
import java.util.stream.Stream;
import org.jabref.logic.l10n.Localization;
import org... | 6,767 | 33.181818 | 143 | java |
null | jabref-main/src/main/java/org/jabref/logic/shared/DBMSConnection.java | package org.jabref.logic.shared;
import java.sql.Connection;
import java.sql.DriverManager;
import java.sql.SQLException;
import java.util.HashSet;
import java.util.Set;
import org.jabref.logic.l10n.Localization;
import org.jabref.logic.shared.exception.InvalidDBMSConnectionPropertiesException;
import org.slf4j.Logg... | 2,563 | 35.628571 | 136 | java |
null | jabref-main/src/main/java/org/jabref/logic/shared/DBMSConnectionProperties.java | package org.jabref.logic.shared;
import java.io.UnsupportedEncodingException;
import java.security.GeneralSecurityException;
import java.util.Objects;
import java.util.Optional;
import java.util.Properties;
import org.jabref.logic.shared.prefs.SharedDatabasePreferences;
import org.jabref.logic.shared.security.Passwor... | 6,188 | 30.416244 | 136 | java |
null | jabref-main/src/main/java/org/jabref/logic/shared/DBMSConnectionPropertiesBuilder.java | package org.jabref.logic.shared;
public class DBMSConnectionPropertiesBuilder {
private DBMSType type;
private String host;
private int port = -1;
private String database;
private String user;
private String password;
private boolean useSSL;
private boolean allowPublicKeyRetrieval;
... | 2,064 | 27.680556 | 147 | java |
null | jabref-main/src/main/java/org/jabref/logic/shared/DBMSProcessor.java | package org.jabref.logic.shared;
import java.sql.Connection;
import java.sql.DatabaseMetaData;
import java.sql.PreparedStatement;
import java.sql.ResultSet;
import java.sql.SQLException;
import java.util.ArrayList;
import java.util.Collections;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;... | 30,493 | 41.352778 | 173 | java |
null | jabref-main/src/main/java/org/jabref/logic/shared/DBMSSynchronizer.java | package org.jabref.logic.shared;
import java.sql.Connection;
import java.sql.SQLException;
import java.util.ArrayList;
import java.util.List;
import java.util.Map;
import java.util.Objects;
import java.util.Optional;
import java.util.Set;
import java.util.stream.Collectors;
import org.jabref.logic.citationkeypattern.... | 17,206 | 39.392019 | 143 | java |
null | jabref-main/src/main/java/org/jabref/logic/shared/DBMSType.java | package org.jabref.logic.shared;
import java.util.Arrays;
import java.util.Optional;
/**
* Enumerates all supported database systems (DBMS) by JabRef.
*/
public enum DBMSType {
POSTGRESQL("PostgreSQL", "org.postgresql.Driver", "jdbc:postgresql://%s:%d/%s", 5432),
MYSQL("MySQL", "org.mariadb.jdbc.Driver", "j... | 1,660 | 28.660714 | 119 | java |
null | jabref-main/src/main/java/org/jabref/logic/shared/DatabaseConnection.java | package org.jabref.logic.shared;
import java.sql.Connection;
public interface DatabaseConnection {
DatabaseConnectionProperties getProperties();
Connection getConnection();
}
| 187 | 16.090909 | 49 | java |
null | jabref-main/src/main/java/org/jabref/logic/shared/DatabaseConnectionProperties.java | package org.jabref.logic.shared;
public interface DatabaseConnectionProperties {
DBMSType getType();
String getDatabase();
int getPort();
String getHost();
String getUser();
String getPassword();
boolean isValid();
String getKeyStore();
boolean isUseSSL();
boolean isAl... | 380 | 13.111111 | 47 | java |
null | jabref-main/src/main/java/org/jabref/logic/shared/DatabaseLocation.java | package org.jabref.logic.shared;
import org.jabref.model.database.BibDatabaseContext;
/**
* This enum represents the location for {@link BibDatabaseContext}.
*/
public enum DatabaseLocation {
LOCAL,
SHARED
}
| 220 | 17.416667 | 68 | java |
null | jabref-main/src/main/java/org/jabref/logic/shared/DatabaseNotSupportedException.java | package org.jabref.logic.shared;
/**
* This exception is thrown in case that the SQL database structure is not compatible with the current shared database
* support mechanisms.
*/
public class DatabaseNotSupportedException extends Exception {
public DatabaseNotSupportedException() {
super("The structur... | 371 | 27.615385 | 118 | java |
null | jabref-main/src/main/java/org/jabref/logic/shared/DatabaseSynchronizer.java | package org.jabref.logic.shared;
import org.jabref.model.entry.BibEntry;
public interface DatabaseSynchronizer {
String getDBName();
void pullChanges();
void closeSharedDatabase();
void registerListener(Object listener);
void openSharedDatabase(DatabaseConnection connection) throws DatabaseNo... | 495 | 20.565217 | 96 | java |
null | jabref-main/src/main/java/org/jabref/logic/shared/MySQLProcessor.java | package org.jabref.logic.shared;
import java.sql.SQLException;
import java.util.Map;
import org.jabref.model.metadata.MetaData;
/**
* Processes all incoming or outgoing bib data to MySQL Database and manages its structure.
*/
public class MySQLProcessor extends DBMSProcessor {
private Integer VERSION_DB_STRUC... | 3,335 | 37.344828 | 132 | java |
null | jabref-main/src/main/java/org/jabref/logic/shared/OracleProcessor.java | package org.jabref.logic.shared;
import java.sql.PreparedStatement;
import java.sql.ResultSet;
import java.sql.SQLException;
import java.sql.Statement;
import java.util.ArrayList;
import java.util.List;
import java.util.Map;
import java.util.Properties;
import java.util.stream.Collectors;
import org.jabref.logic.shar... | 9,172 | 40.31982 | 173 | java |
null | jabref-main/src/main/java/org/jabref/logic/shared/PostgreSQLProcessor.java | package org.jabref.logic.shared;
import java.sql.PreparedStatement;
import java.sql.ResultSet;
import java.sql.SQLException;
import java.sql.Statement;
import java.util.List;
import java.util.Map;
import org.jabref.gui.JabRefExecutorService;
import org.jabref.logic.shared.listener.PostgresSQLNotificationListener;
imp... | 7,254 | 39.988701 | 157 | java |
null | jabref-main/src/main/java/org/jabref/logic/shared/event/ConnectionLostEvent.java | package org.jabref.logic.shared.event;
import org.jabref.model.database.BibDatabaseContext;
/**
* A new {@link ConnectionLostEvent} is fired, when the connection to the shared database gets lost.
*/
public class ConnectionLostEvent {
private final BibDatabaseContext bibDatabaseContext;
/**
* @param b... | 619 | 25.956522 | 100 | java |
null | jabref-main/src/main/java/org/jabref/logic/shared/event/SharedEntriesNotPresentEvent.java | package org.jabref.logic.shared.event;
import java.util.List;
import org.jabref.model.entry.BibEntry;
/**
* This event is fired when the user tries to push changes of one or more obsolete
* {@link BibEntry} to the server.
*/
public class SharedEntriesNotPresentEvent {
private final List<BibEntry> bibEntries;... | 587 | 21.615385 | 82 | java |
null | jabref-main/src/main/java/org/jabref/logic/shared/event/UpdateRefusedEvent.java | package org.jabref.logic.shared.event;
import org.jabref.model.database.BibDatabaseContext;
import org.jabref.model.entry.BibEntry;
/**
* A new {@link UpdateRefusedEvent} is fired, when the user tries to push changes of an obsolete {@link BibEntry} to the server.
*/
public class UpdateRefusedEvent {
private fi... | 1,126 | 29.459459 | 128 | java |
null | jabref-main/src/main/java/org/jabref/logic/shared/exception/InvalidDBMSConnectionPropertiesException.java | package org.jabref.logic.shared.exception;
import org.jabref.logic.shared.DBMSConnectionProperties;
/**
* This exception is thrown in case that {@link DBMSConnectionProperties} does not provide all data needed for a connection.
*/
public class InvalidDBMSConnectionPropertiesException extends Exception {
public... | 433 | 30 | 124 | java |
null | jabref-main/src/main/java/org/jabref/logic/shared/exception/NotASharedDatabaseException.java | package org.jabref.logic.shared.exception;
/**
* This exception is thrown when a shared database is required, but it actually isn't one.
*/
public class NotASharedDatabaseException extends Exception {
public NotASharedDatabaseException() {
super("Required database is not shared.");
}
}
| 307 | 24.666667 | 90 | java |
null | jabref-main/src/main/java/org/jabref/logic/shared/exception/OfflineLockException.java | package org.jabref.logic.shared.exception;
import org.jabref.model.entry.BibEntry;
/**
* This exception is thrown if a BibEntry with smaller version number is going to be used for an update on the shared side.
* The principle of optimistic offline lock forbids updating with obsolete objects.
*/
public class Offlin... | 838 | 28.964286 | 123 | java |
null | jabref-main/src/main/java/org/jabref/logic/shared/exception/SharedEntryNotPresentException.java | package org.jabref.logic.shared.exception;
import org.jabref.model.entry.BibEntry;
/**
* This exception is thrown if a BibEntry is going to be updated while it does not exist on the shared side.
*/
public class SharedEntryNotPresentException extends Exception {
private final BibEntry nonPresentBibEntry;
p... | 614 | 28.285714 | 108 | java |
null | jabref-main/src/main/java/org/jabref/logic/shared/listener/OracleNotificationListener.java | package org.jabref.logic.shared.listener;
import org.jabref.logic.shared.DBMSSynchronizer;
import oracle.jdbc.dcn.DatabaseChangeEvent;
import oracle.jdbc.dcn.DatabaseChangeListener;
/**
* A listener for Oracle database notifications.
*/
public class OracleNotificationListener implements DatabaseChangeListener {
... | 641 | 25.75 | 75 | java |
null | jabref-main/src/main/java/org/jabref/logic/shared/listener/PostgresSQLNotificationListener.java | package org.jabref.logic.shared.listener;
import java.sql.SQLException;
import org.jabref.logic.shared.DBMSProcessor;
import org.jabref.logic.shared.DBMSSynchronizer;
import org.postgresql.PGConnection;
import org.postgresql.PGNotification;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
/**
* A listener ... | 1,797 | 30.54386 | 106 | java |
null | jabref-main/src/main/java/org/jabref/logic/shared/prefs/SharedDatabasePreferences.java | package org.jabref.logic.shared.prefs;
import java.io.UnsupportedEncodingException;
import java.security.GeneralSecurityException;
import java.util.Optional;
import java.util.prefs.BackingStoreException;
import java.util.prefs.Preferences;
import org.jabref.logic.shared.DatabaseConnectionProperties;
import org.jabref... | 6,146 | 33.728814 | 130 | java |
null | jabref-main/src/main/java/org/jabref/logic/shared/security/Password.java | package org.jabref.logic.shared.security;
import java.io.UnsupportedEncodingException;
import java.nio.charset.StandardCharsets;
import java.security.GeneralSecurityException;
import java.security.MessageDigest;
import java.security.NoSuchAlgorithmException;
import java.util.Arrays;
import java.util.Base64;
import ja... | 2,629 | 36.571429 | 113 | java |
null | jabref-main/src/main/java/org/jabref/logic/texparser/DefaultLatexParser.java | package org.jabref.logic.texparser;
import java.io.IOException;
import java.io.InputStream;
import java.io.InputStreamReader;
import java.io.LineNumberReader;
import java.io.Reader;
import java.io.UncheckedIOException;
import java.nio.channels.ClosedChannelException;
import java.nio.charset.StandardCharsets;
import ja... | 6,601 | 37.608187 | 117 | java |
null | jabref-main/src/main/java/org/jabref/logic/texparser/LatexParser.java | package org.jabref.logic.texparser;
import java.nio.file.Path;
import java.util.List;
import org.jabref.model.texparser.LatexParserResult;
/**
* Parses a LaTeX file
*/
public interface LatexParser {
/**
* For testing purposes.
*
* @param citeString String that contains a citation
* @return... | 960 | 24.972973 | 96 | java |
null | jabref-main/src/main/java/org/jabref/logic/texparser/TexBibEntriesResolver.java | package org.jabref.logic.texparser;
import java.io.IOException;
import java.nio.file.Path;
import java.util.Map;
import java.util.Set;
import java.util.function.Function;
import java.util.stream.Collectors;
import java.util.stream.Stream;
import org.jabref.logic.importer.ImportFormatPreferences;
import org.jabref.log... | 4,213 | 48 | 181 | java |
null | jabref-main/src/main/java/org/jabref/logic/undo/AddUndoableActionEvent.java | package org.jabref.logic.undo;
/**
* Event sent when a new undoable action is added to the undo manager
*/
public class AddUndoableActionEvent extends UndoChangeEvent {
public AddUndoableActionEvent(boolean canUndo, String undoDescription, boolean canRedo, String redoDescription) {
super(canUndo, undoDe... | 366 | 29.583333 | 117 | java |
null | jabref-main/src/main/java/org/jabref/logic/undo/UndoChangeEvent.java | package org.jabref.logic.undo;
/**
* Event sent when something is undone or redone
*/
public class UndoChangeEvent {
private final boolean canUndo;
private final String undoDescription;
private final boolean canRedo;
private final String redoDescription;
public UndoChangeEvent(boolean canUndo, ... | 1,141 | 22.791667 | 110 | java |
null | jabref-main/src/main/java/org/jabref/logic/undo/UndoRedoEvent.java | package org.jabref.logic.undo;
/**
* Event sent when something is undone or redone
*/
public class UndoRedoEvent extends UndoChangeEvent {
public UndoRedoEvent(boolean canUndo, String undoDescription, boolean canRedo, String redoDescription) {
super(canUndo, undoDescription, canRedo, redoDescription);
... | 327 | 26.333333 | 108 | java |
null | jabref-main/src/main/java/org/jabref/logic/util/BackupFileType.java | package org.jabref.logic.util;
import java.util.Collections;
import java.util.List;
public enum BackupFileType implements FileType {
// Used at BackupManager
BACKUP("Backup", "bak"),
// Used when writing the .bib file. See {@link org.jabref.logic.exporter.AtomicFileWriter}
// Used for copying the .b... | 782 | 22.727273 | 94 | java |
null | jabref-main/src/main/java/org/jabref/logic/util/BuildInfo.java | package org.jabref.logic.util;
import java.io.IOException;
import java.io.InputStream;
import java.io.InputStreamReader;
import java.nio.charset.StandardCharsets;
import java.util.Locale;
import java.util.Optional;
import java.util.Properties;
public final class BuildInfo {
public static final String UNKNOWN_VER... | 3,438 | 46.109589 | 147 | java |
null | jabref-main/src/main/java/org/jabref/logic/util/CoarseChangeFilter.java | package org.jabref.logic.util;
import java.util.Optional;
import org.jabref.model.database.BibDatabaseContext;
import org.jabref.model.database.event.BibDatabaseContextChangedEvent;
import org.jabref.model.entry.BibEntry;
import org.jabref.model.entry.event.FieldChangedEvent;
import org.jabref.model.entry.field.Field... | 2,655 | 36.408451 | 119 | java |
null | jabref-main/src/main/java/org/jabref/logic/util/DelayTaskThrottler.java | package org.jabref.logic.util;
import java.util.concurrent.Callable;
import java.util.concurrent.RejectedExecutionException;
import java.util.concurrent.ScheduledFuture;
import java.util.concurrent.ScheduledThreadPoolExecutor;
import java.util.concurrent.TimeUnit;
import org.jabref.gui.JabRefExecutorService;
import ... | 2,719 | 31.380952 | 138 | java |
null | jabref-main/src/main/java/org/jabref/logic/util/ExternalLinkCreator.java | package org.jabref.logic.util;
import java.net.URISyntaxException;
import java.util.Optional;
import org.jabref.model.entry.BibEntry;
import org.jabref.model.entry.field.StandardField;
import org.apache.http.client.utils.URIBuilder;
public class ExternalLinkCreator {
private static final String SHORTSCIENCE_SEA... | 1,330 | 37.028571 | 106 | java |
null | jabref-main/src/main/java/org/jabref/logic/util/FileType.java | package org.jabref.logic.util;
import java.util.List;
import java.util.stream.Collectors;
/**
* Interface for {@link StandardFileType} which allows us to extend the underlying enum with own filetypes for custom exporters
*/
public interface FileType {
default List<String> getExtensionsWithAsteriskAndDot() {
... | 551 | 25.285714 | 127 | java |
null | jabref-main/src/main/java/org/jabref/logic/util/MetadataSerializationConfiguration.java | package org.jabref.logic.util;
import org.jabref.model.groups.AllEntriesGroup;
import org.jabref.model.groups.AutomaticKeywordGroup;
import org.jabref.model.groups.AutomaticPersonsGroup;
import org.jabref.model.groups.ExplicitGroup;
import org.jabref.model.groups.RegexKeywordGroup;
import org.jabref.model.groups.Searc... | 2,083 | 29.202899 | 121 | java |
null | jabref-main/src/main/java/org/jabref/logic/util/OS.java | package org.jabref.logic.util;
import java.util.Locale;
import org.jabref.gui.desktop.os.DefaultDesktop;
import org.jabref.gui.desktop.os.Linux;
import org.jabref.gui.desktop.os.NativeDesktop;
import org.jabref.gui.desktop.os.OSX;
import org.jabref.gui.desktop.os.Windows;
/**
* Operating system (OS) detection
*
*... | 1,549 | 32.695652 | 128 | java |
null | jabref-main/src/main/java/org/jabref/logic/util/StandardFileType.java | package org.jabref.logic.util;
import java.util.Arrays;
import java.util.List;
import org.jabref.model.util.OptionalUtil;
/**
* @implNote Enter the extensions in lowercase without a dot! The dot is added implicitly.
*/
public enum StandardFileType implements FileType {
ENDNOTE("Endnote", "ref", "enw"),
IS... | 2,296 | 27.7125 | 114 | java |
null | jabref-main/src/main/java/org/jabref/logic/util/TestEntry.java | package org.jabref.logic.util;
import java.util.Arrays;
import org.jabref.model.entry.BibEntry;
import org.jabref.model.entry.field.StandardField;
import org.jabref.model.entry.types.StandardEntryType;
public class TestEntry {
private TestEntry() {
}
public static BibEntry getTestEntry() {
BibE... | 2,924 | 51.232143 | 201 | java |
null | jabref-main/src/main/java/org/jabref/logic/util/UnknownFileType.java | package org.jabref.logic.util;
import java.util.Arrays;
import java.util.Collections;
import java.util.List;
import java.util.Locale;
import java.util.Objects;
public class UnknownFileType implements FileType {
private final List<String> extensions;
public UnknownFileType(String... extensions) {
for... | 1,321 | 24.423077 | 88 | java |
null | jabref-main/src/main/java/org/jabref/logic/util/UpdateField.java | package org.jabref.logic.util;
import java.util.Collection;
import java.util.Optional;
import org.jabref.logic.preferences.OwnerPreferences;
import org.jabref.logic.preferences.TimestampPreferences;
import org.jabref.model.FieldChange;
import org.jabref.model.entry.BibEntry;
import org.jabref.model.entry.field.Field;... | 4,164 | 37.925234 | 151 | java |
null | jabref-main/src/main/java/org/jabref/logic/util/Version.java | package org.jabref.logic.util;
import java.io.BufferedReader;
import java.io.IOException;
import java.io.InputStreamReader;
import java.net.HttpURLConnection;
import java.net.URL;
import java.util.ArrayList;
import java.util.List;
import java.util.Objects;
import java.util.Optional;
import java.util.regex.Matcher;
imp... | 11,940 | 36.432602 | 177 | java |
null | jabref-main/src/main/java/org/jabref/logic/util/WebViewStore.java | package org.jabref.logic.util;
import java.util.ArrayDeque;
import java.util.Queue;
import javafx.application.Platform;
import javafx.scene.web.WebView;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
/**
* A dynamic web view store. This is used primarily to prevent UI freezes while constructing web view ... | 2,938 | 30.265957 | 141 | java |
null | jabref-main/src/main/java/org/jabref/logic/util/io/AutoLinkPreferences.java | package org.jabref.logic.util.io;
import javafx.beans.property.BooleanProperty;
import javafx.beans.property.ObjectProperty;
import javafx.beans.property.ReadOnlyObjectProperty;
import javafx.beans.property.SimpleBooleanProperty;
import javafx.beans.property.SimpleObjectProperty;
import javafx.beans.property.SimpleStr... | 3,259 | 36.471264 | 87 | java |
null | jabref-main/src/main/java/org/jabref/logic/util/io/BackupFileUtil.java | package org.jabref.logic.util.io;
import java.io.IOException;
import java.nio.ByteBuffer;
import java.nio.file.Files;
import java.nio.file.Path;
import java.time.ZonedDateTime;
import java.time.format.DateTimeFormatter;
import java.util.HexFormat;
import java.util.Optional;
import org.jabref.logic.util.BackupFileType... | 4,412 | 39.486239 | 147 | java |
null | jabref-main/src/main/java/org/jabref/logic/util/io/CitationKeyBasedFileFinder.java | package org.jabref.logic.util.io;
import java.io.IOException;
import java.io.UncheckedIOException;
import java.nio.file.FileVisitOption;
import java.nio.file.Files;
import java.nio.file.Path;
import java.nio.file.attribute.BasicFileAttributes;
import java.util.ArrayList;
import java.util.Collections;
import java.util.... | 3,903 | 38.04 | 166 | java |
null | jabref-main/src/main/java/org/jabref/logic/util/io/DatabaseFileLookup.java | package org.jabref.logic.util.io;
import java.io.File;
import java.nio.file.Path;
import java.util.ArrayList;
import java.util.HashSet;
import java.util.List;
import java.util.Objects;
import java.util.Optional;
import java.util.Set;
import java.util.stream.Collectors;
import org.jabref.model.database.BibDatabase;
im... | 2,735 | 33.2 | 117 | java |
null | jabref-main/src/main/java/org/jabref/logic/util/io/FileFinder.java | package org.jabref.logic.util.io;
import java.io.IOException;
import java.nio.file.Path;
import java.util.List;
import org.jabref.model.entry.BibEntry;
public interface FileFinder {
/**
* Finds all files in the given directories that are probably associated with the given entries and have one of the passed... | 647 | 31.4 | 138 | java |
null | jabref-main/src/main/java/org/jabref/logic/util/io/FileFinders.java | package org.jabref.logic.util.io;
public class FileFinders {
/**
* Creates a preconfigurated file finder based on the given AutoLink preferences.
*/
public static FileFinder constructFromConfiguration(AutoLinkPreferences autoLinkPreferences) {
return switch (autoLinkPreferences.getCitationKey... | 684 | 37.055556 | 133 | java |
null | jabref-main/src/main/java/org/jabref/logic/util/io/FileHistory.java | package org.jabref.logic.util.io;
import java.nio.file.Path;
import java.util.ArrayList;
import java.util.List;
import javafx.collections.ModifiableObservableListBase;
public class FileHistory extends ModifiableObservableListBase<Path> {
private static final int HISTORY_SIZE = 8;
private final List<Path> h... | 1,398 | 21.564516 | 105 | java |
null | jabref-main/src/main/java/org/jabref/logic/util/io/FileNameCleaner.java | package org.jabref.logic.util.io;
/**
* This class is based on http://stackoverflow.com/a/5626340/873282
* extended with LEFT CURLY BRACE and RIGHT CURLY BRACE
* Replaces illegal characters in given file paths.
*
* Regarding the maximum length, see {@link FileUtil#getValidFileName(String)}
*/
public class FileNa... | 1,748 | 31.388889 | 104 | java |
null | jabref-main/src/main/java/org/jabref/logic/util/io/FileNameUniqueness.java | package org.jabref.logic.util.io;
import java.io.IOException;
import java.nio.file.Files;
import java.nio.file.Path;
import java.util.Objects;
import java.util.Optional;
import java.util.regex.Matcher;
import java.util.regex.Pattern;
import org.jabref.gui.DialogService;
import org.jabref.logic.l10n.Localization;
pub... | 5,265 | 42.520661 | 161 | java |
null | jabref-main/src/main/java/org/jabref/logic/util/io/FileUtil.java | package org.jabref.logic.util.io;
import java.io.File;
import java.io.IOException;
import java.io.UncheckedIOException;
import java.nio.file.FileSystems;
import java.nio.file.Files;
import java.nio.file.InvalidPathException;
import java.nio.file.Path;
import java.nio.file.StandardOpenOption;
import java.util.ArrayList... | 19,556 | 38.669371 | 144 | java |
null | jabref-main/src/main/java/org/jabref/logic/util/io/RegExpBasedFileFinder.java | package org.jabref.logic.util.io;
import java.io.File;
import java.io.IOException;
import java.io.UncheckedIOException;
import java.nio.file.FileVisitOption;
import java.nio.file.Files;
import java.nio.file.Path;
import java.nio.file.attribute.BasicFileAttributes;
import java.util.ArrayList;
import java.util.List;
imp... | 9,787 | 43.694064 | 150 | java |
null | jabref-main/src/main/java/org/jabref/logic/util/io/XMLUtil.java | package org.jabref.logic.util.io;
import java.io.StringWriter;
import java.util.AbstractList;
import java.util.Collections;
import java.util.List;
import java.util.Optional;
import java.util.RandomAccess;
import javax.xml.transform.OutputKeys;
import javax.xml.transform.Transformer;
import javax.xml.transform.Transfo... | 4,265 | 29.913043 | 153 | java |
null | jabref-main/src/main/java/org/jabref/logic/util/strings/HTMLUnicodeConversionMaps.java | package org.jabref.logic.util.strings;
import java.util.HashMap;
import java.util.Map;
public class HTMLUnicodeConversionMaps {
// most of the LaTeX commands can be read at http://en.wikibooks.org/wiki/LaTeX/Accents
// The symbols can be seen at http://www.fileformat.info/info/unicode/char/a4/index.htm. Repl... | 60,816 | 65.831868 | 156 | java |
null | jabref-main/src/main/java/org/jabref/logic/util/strings/QuotedStringTokenizer.java | package org.jabref.logic.util.strings;
/**
* A String tokenizer that works just like StringTokenizer, but considers quoted
* characters (which do not act as delimiters).
*/
public class QuotedStringTokenizer {
private final String content;
private final int contentLength;
private final String delimiter... | 2,269 | 32.880597 | 203 | java |
null | jabref-main/src/main/java/org/jabref/logic/util/strings/RtfCharMap.java | package org.jabref.logic.util.strings;
import java.util.HashMap;
public class RtfCharMap {
private final HashMap<String, String> rtfMap = new HashMap<>();
public RtfCharMap() {
put("`a", "\\'e0");
put("`e", "\\'e8");
put("`i", "\\'ec");
put("`o", "\\'f2");
put("`u", "... | 8,946 | 32.260223 | 76 | java |
null | jabref-main/src/main/java/org/jabref/logic/util/strings/StringLengthComparator.java | package org.jabref.logic.util.strings;
import java.util.Comparator;
public class StringLengthComparator implements Comparator<String> {
@Override
public int compare(String o1, String o2) {
if (o1.length() > o2.length()) {
return -1;
} else if (o1.length() == o2.length()) {
... | 371 | 20.882353 | 67 | java |
null | jabref-main/src/main/java/org/jabref/logic/util/strings/StringManipulator.java | package org.jabref.logic.util.strings;
import org.jabref.logic.formatter.casechanger.CapitalizeFormatter;
import org.jabref.logic.formatter.casechanger.LowerCaseFormatter;
import org.jabref.logic.formatter.casechanger.UpperCaseFormatter;
import org.jabref.model.util.ResultingStringState;
public class StringManipulato... | 6,451 | 35.659091 | 120 | java |
null | jabref-main/src/main/java/org/jabref/logic/util/strings/StringSimilarity.java | package org.jabref.logic.util.strings;
import java.util.Locale;
import info.debatty.java.stringsimilarity.Levenshtein;
public class StringSimilarity {
private final Levenshtein METRIC_DISTANCE = new Levenshtein();
// edit distance threshold for entry title comparison
private final int METRIC_THRESHOLD = ... | 978 | 33.964286 | 102 | java |
null | jabref-main/src/main/java/org/jabref/logic/util/strings/UnicodeLigaturesMap.java | package org.jabref.logic.util.strings;
import java.util.HashMap;
public class UnicodeLigaturesMap extends HashMap<String, String> {
/**
* Ligature mapping taken from https://en.wikipedia.org/wiki/Typographic_ligature#Ligatures_in_Unicode_(Latin_alphabets)
*
* The mapping is bijective. In case it i... | 2,067 | 28.971014 | 124 | java |
null | jabref-main/src/main/java/org/jabref/logic/util/strings/XmlCharsMap.java | package org.jabref.logic.util.strings;
import java.util.HashMap;
public class XmlCharsMap extends HashMap<String, String> {
public XmlCharsMap() {
put("\\{\\\\\\\"\\{a\\}\\}", "ä");
put("\\{\\\\\\\"\\{A\\}\\}", "Ä");
put("\\{\\\\\\\"\\{e\\}\\}", "ë");
put("\\{\... | 5,462 | 39.466667 | 58 | java |
null | jabref-main/src/main/java/org/jabref/logic/xmp/DocumentInformationExtractor.java | package org.jabref.logic.xmp;
import java.util.Map;
import java.util.Optional;
import org.jabref.model.entry.BibEntry;
import org.jabref.model.entry.field.Field;
import org.jabref.model.entry.field.FieldFactory;
import org.jabref.model.entry.field.InternalField;
import org.jabref.model.entry.field.StandardField;
impo... | 3,204 | 30.116505 | 84 | java |
null | jabref-main/src/main/java/org/jabref/logic/xmp/DublinCoreExtractor.java | package org.jabref.logic.xmp;
import java.util.Arrays;
import java.util.Comparator;
import java.util.List;
import java.util.Optional;
import java.util.SortedSet;
import java.util.TreeSet;
import java.util.function.Consumer;
import java.util.function.Predicate;
import org.jabref.logic.TypedBibEntry;
import org.jabref.... | 17,203 | 34.619048 | 174 | java |
null | jabref-main/src/main/java/org/jabref/logic/xmp/EncryptedPdfsNotSupportedException.java | package org.jabref.logic.xmp;
import java.io.IOException;
public class EncryptedPdfsNotSupportedException extends IOException {
// no additional information needed
}
| 172 | 20.625 | 69 | java |
null | jabref-main/src/main/java/org/jabref/logic/xmp/XmpPreferences.java | package org.jabref.logic.xmp;
import java.util.Set;
import javafx.beans.property.BooleanProperty;
import javafx.beans.property.ObjectProperty;
import javafx.beans.property.SimpleBooleanProperty;
import javafx.collections.FXCollections;
import javafx.collections.ObservableSet;
import org.jabref.model.entry.field.Fiel... | 1,413 | 30.422222 | 129 | java |
null | jabref-main/src/main/java/org/jabref/logic/xmp/XmpUtilReader.java | package org.jabref.logic.xmp;
import java.io.ByteArrayInputStream;
import java.io.IOException;
import java.nio.file.Path;
import java.util.ArrayList;
import java.util.LinkedList;
import java.util.List;
import java.util.Optional;
import org.jabref.model.entry.BibEntry;
import org.jabref.model.entry.LinkedFile;
import ... | 6,187 | 40.253333 | 150 | java |
null | jabref-main/src/main/java/org/jabref/logic/xmp/XmpUtilShared.java | package org.jabref.logic.xmp;
import java.io.IOException;
import java.io.InputStream;
import java.nio.file.Path;
import java.util.List;
import org.jabref.model.entry.BibEntry;
import org.apache.xmpbox.XMPMetadata;
import org.apache.xmpbox.xml.DomXmpParser;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
/*... | 1,994 | 31.704918 | 140 | java |
null | jabref-main/src/main/java/org/jabref/logic/xmp/XmpUtilWriter.java | package org.jabref.logic.xmp;
import java.io.ByteArrayInputStream;
import java.io.ByteArrayOutputStream;
import java.io.IOException;
import java.io.UnsupportedEncodingException;
import java.nio.charset.StandardCharsets;
import java.nio.file.Files;
import java.nio.file.Path;
import java.util.Arrays;
import java.util.Li... | 14,850 | 42.93787 | 121 | java |
null | jabref-main/src/main/java/org/jabref/migrations/ConvertLegacyExplicitGroups.java | package org.jabref.migrations;
import java.util.ArrayList;
import java.util.List;
import java.util.Objects;
import org.jabref.logic.importer.ParserResult;
import org.jabref.model.entry.BibEntry;
import org.jabref.model.groups.ExplicitGroup;
import org.jabref.model.groups.GroupTreeNode;
/**
* Converts legacy explici... | 1,731 | 32.960784 | 115 | java |
null | jabref-main/src/main/java/org/jabref/migrations/ConvertMarkingToGroups.java | package org.jabref.migrations;
import java.util.Collection;
import java.util.List;
import java.util.Map;
import java.util.Objects;
import java.util.Optional;
import java.util.regex.Matcher;
import java.util.regex.Pattern;
import javafx.collections.ObservableList;
import org.jabref.logic.groups.DefaultGroupsFactory;
... | 3,622 | 37.956989 | 121 | java |
null | jabref-main/src/main/java/org/jabref/migrations/CustomEntryTypePreferenceMigration.java | package org.jabref.migrations;
import java.util.ArrayList;
import java.util.List;
import java.util.Optional;
import java.util.stream.Collectors;
import org.jabref.gui.Globals;
import org.jabref.model.database.BibDatabaseMode;
import org.jabref.model.entry.BibEntryType;
import org.jabref.model.entry.BibEntryTypeBuilde... | 3,103 | 39.842105 | 116 | java |
null | jabref-main/src/main/java/org/jabref/migrations/MergeReviewIntoCommentMigration.java | package org.jabref.migrations;
import java.util.List;
import java.util.Objects;
import java.util.stream.Collectors;
import org.jabref.logic.importer.ParserResult;
import org.jabref.logic.l10n.Localization;
import org.jabref.model.entry.BibEntry;
import org.jabref.model.entry.field.StandardField;
import org.slf4j.Log... | 3,130 | 40.197368 | 160 | java |
null | jabref-main/src/main/java/org/jabref/migrations/PostOpenMigration.java | package org.jabref.migrations;
import org.jabref.logic.importer.ParserResult;
public interface PostOpenMigration {
void performMigration(ParserResult parserResult);
}
| 173 | 20.75 | 53 | java |
null | jabref-main/src/main/java/org/jabref/migrations/PreferencesMigrations.java | package org.jabref.migrations;
import java.util.ArrayList;
import java.util.Collections;
import java.util.EnumSet;
import java.util.HashMap;
import java.util.LinkedHashSet;
import java.util.List;
import java.util.Map;
import java.util.Optional;
import java.util.Set;
import java.util.function.UnaryOperator;
import java... | 29,295 | 52.754128 | 345 | java |
null | jabref-main/src/main/java/org/jabref/migrations/SpecialFieldsToSeparateFields.java | package org.jabref.migrations;
import java.util.Arrays;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.Optional;
import java.util.stream.Collectors;
import org.jabref.logic.importer.ParserResult;
import org.jabref.model.entry.BibEntry;
import org.jabref.model.entry.Keyword;
im... | 2,926 | 38.554054 | 117 | java |
null | jabref-main/src/main/java/org/jabref/model/ChainNode.java | package org.jabref.model;
import java.util.Objects;
import java.util.Optional;
/**
* Represents a node in a chain.
* We view a chain as a vertical hierarchy and thus refer to the previous node as parent and the next node is a child.
* <p>
* In usual implementations, nodes function as wrappers around a data object... | 5,408 | 31.584337 | 133 | java |
null | jabref-main/src/main/java/org/jabref/model/FieldChange.java | package org.jabref.model;
import java.util.Objects;
import org.jabref.model.entry.BibEntry;
import org.jabref.model.entry.field.Field;
/**
* This class is used in the instance of a field being modified, removed or added.
*/
public class FieldChange {
private final BibEntry entry;
private final Field field... | 2,333 | 25.522727 | 109 | java |
null | jabref-main/src/main/java/org/jabref/model/TreeNode.java | package org.jabref.model;
import java.util.ArrayList;
import java.util.Comparator;
import java.util.List;
import java.util.Objects;
import java.util.Optional;
import java.util.function.Consumer;
import java.util.function.Predicate;
import javafx.collections.FXCollections;
import javafx.collections.ObservableList;
/*... | 21,607 | 33.298413 | 123 | java |
null | jabref-main/src/main/java/org/jabref/model/database/BibDatabase.java | package org.jabref.model.database;
import java.math.BigInteger;
import java.security.SecureRandom;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.Collection;
import java.util.Collections;
import java.util.Comparator;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import j... | 22,063 | 33.049383 | 171 | java |
null | jabref-main/src/main/java/org/jabref/model/database/BibDatabaseContext.java | package org.jabref.model.database;
import java.nio.file.Files;
import java.nio.file.Path;
import java.util.ArrayList;
import java.util.List;
import java.util.Objects;
import java.util.Optional;
import java.util.stream.Collectors;
import org.jabref.architecture.AllowedToUseLogic;
import org.jabref.gui.LibraryTab;
impo... | 9,199 | 33.586466 | 126 | java |
null | jabref-main/src/main/java/org/jabref/model/database/BibDatabaseMode.java | package org.jabref.model.database;
import java.util.Locale;
/**
* An enum which contains the possible {@link BibDatabase} Modes.
* Possible are BibTeX and biblatex.
*/
public enum BibDatabaseMode {
BIBTEX,
BIBLATEX;
/**
* @return the name of the current mode as String
*/
public String ge... | 1,510 | 25.982143 | 109 | java |
null | jabref-main/src/main/java/org/jabref/model/database/BibDatabaseModeDetection.java | package org.jabref.model.database;
import java.util.stream.Stream;
import org.jabref.model.entry.BibEntry;
import org.jabref.model.entry.types.EntryType;
import org.jabref.model.entry.types.EntryTypeFactory;
public class BibDatabaseModeDetection {
private BibDatabaseModeDetection() {
}
/**
* Tries... | 1,148 | 30.916667 | 99 | java |
null | jabref-main/src/main/java/org/jabref/model/database/BibDatabases.java | package org.jabref.model.database;
import java.util.Collection;
import java.util.List;
import java.util.stream.Collectors;
import org.jabref.model.entry.BibEntry;
public class BibDatabases {
private BibDatabases() {
}
/**
* Receives a Collection of BibEntry instances, iterates through them, and
... | 738 | 28.56 | 83 | java |
null | jabref-main/src/main/java/org/jabref/model/database/KeyChangeListener.java | package org.jabref.model.database;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.List;
import java.util.Optional;
import org.jabref.model.database.event.EntriesRemovedEvent;
import org.jabref.model.entry.BibEntry;
import org.jabref.model.entry.event.FieldChangedEvent;
import org.jabref.model.e... | 2,816 | 33.777778 | 128 | java |
null | jabref-main/src/main/java/org/jabref/model/database/KeyCollisionException.java | package org.jabref.model.database;
public class KeyCollisionException extends RuntimeException {
private String id;
public KeyCollisionException() {
super();
}
public KeyCollisionException(String msg, String id) {
super(msg);
this.id = id;
}
public KeyCollisionExcept... | 541 | 18.357143 | 67 | java |
null | jabref-main/src/main/java/org/jabref/model/database/event/AutosaveEvent.java | package org.jabref.model.database.event;
/**
* This Event is fired from {@link org.jabref.logic.autosaveandbackup.AutosaveManager} in case that a save task is pending.
*/
public class AutosaveEvent {
// no data
}
| 220 | 23.555556 | 123 | java |
null | jabref-main/src/main/java/org/jabref/model/database/event/BibDatabaseContextChangedEvent.java | package org.jabref.model.database.event;
import org.jabref.model.entry.event.EntriesEvent;
import org.jabref.model.groups.event.GroupUpdatedEvent;
import org.jabref.model.metadata.event.MetaDataChangedEvent;
/**
* This event is automatically fired at the same time as {@link EntriesEvent}, {@link GroupUpdatedEvent}, ... | 1,003 | 28.529412 | 138 | java |
null | jabref-main/src/main/java/org/jabref/model/database/event/ChangePropagation.java | package org.jabref.model.database.event;
public enum ChangePropagation {
POST_EVENT, DO_NOT_POST_EVENT
}
| 110 | 17.5 | 40 | java |
null | jabref-main/src/main/java/org/jabref/model/database/event/EntriesAddedEvent.java | package org.jabref.model.database.event;
import java.util.List;
import org.jabref.model.database.BibDatabase;
import org.jabref.model.entry.BibEntry;
import org.jabref.model.entry.event.EntriesEvent;
import org.jabref.model.entry.event.EntriesEventSource;
/**
* {@link EntriesAddedEvent} is fired when at least {@lin... | 1,303 | 30.047619 | 111 | java |
null | jabref-main/src/main/java/org/jabref/model/database/event/EntriesRemovedEvent.java | package org.jabref.model.database.event;
import java.util.List;
import org.jabref.model.entry.BibEntry;
import org.jabref.model.entry.event.EntriesEvent;
import org.jabref.model.entry.event.EntriesEventSource;
/**
* <code>EntriesRemovedEvent</code> is fired when at least one <code>BibEntry</code> is being removed
... | 922 | 28.774194 | 101 | java |
null | jabref-main/src/main/java/org/jabref/model/entry/Author.java | package org.jabref.model.entry;
import java.util.Objects;
import java.util.Optional;
import org.jabref.model.strings.LatexToUnicodeAdapter;
import org.jabref.model.strings.StringUtil;
/**
* This is an immutable class that keeps information regarding single author. It is just a container for the information, with ve... | 14,580 | 37.070496 | 267 | java |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.