protfunc / server.py

Commit History

fix: _ESM_DIM global scope fix for model info endpoint
fee2326
Running

Sbhat2026 Claude Sonnet 4.6 commited on

deploy: Add GO term explanation panel, CAFA-6 predict script, and OBO def parsing
3be3a1a

Sbhat2026 Claude Sonnet 4.6 commited on

deploy: bug fix, unified metrics, home.js + home.css
152ac5e

Sbhat2026 Claude Sonnet 4.6 commited on

v4: creator credit, stage canvases, no-cache fix
0066991
verified

Sbhat2026 commited on

feat: explanation fields in /api/go_terms response
307c594

Sbhat2026 Claude Sonnet 4.6 commited on

feat: add /api/go_terms lightweight endpoint for pipeline integration
94a1c8f

Sbhat2026 Claude Sonnet 4.6 commited on

feat: unified_35M_v1 — 35M ESM + GOA-enriched training, auto ESM-dim detection
f08710e

Sbhat2026 Claude Sonnet 4.6 commited on

deploy: feat: taxon auto-detection, UniProt annotation comparison, Platt+temp loading
5868c2a

Sbhat2026 Claude Sonnet 4.6 commited on

deploy: fix: tighten mammal false positive rate (threshold floor + dynamic cap)
d8db065

Sbhat2026 Claude Sonnet 4.6 commited on

deploy: feat: feature-level importance viz with 3D structure coloring
991a1d4

Sbhat2026 Claude Sonnet 4.6 commited on

v4.2: precision-tuned mammal thresholds (T=3.85), fix threshold mismatch
c79ebba

Sbhat2026 Claude Sonnet 4.6 commited on

ProtFunc v4.1: gradient saliency on ESM-2, 3Dmol.js AF viewer, UniProt accession input
7727002

Sbhat2026 Claude Sonnet 4.6 commited on

deploy: unified_v1 v4.0 ins=0.9555 mam=0.2908
1684241

Sbhat2026 Claude Sonnet 4.6 commited on

fix: 8124-class MLB + out_dim detection — mammal_enriched.pth now loads correctly, insect recall 95%
74b72d5

Sbhat2026 Claude Sonnet 4.6 commited on

feat: taxon routing + organism selector (insect/mammal/auto)
6a2857a

Sbhat2026 Claude Sonnet 4.6 commited on

fix: threshold dict format, temperature calibration at inference
ea01a23

Sbhat2026 Claude Sonnet 4.6 commited on

perf: remove 1.1 GB CSV from HF download list
86185db

Sbhat2026 Claude Sonnet 4.6 commited on

fix: remove dead code + dead var in propagate_and_filter
b9eb223

Sbhat2026 Claude Sonnet 4.6 commited on

fix+enhance: device global, GO depth/names, replaced_by remapping
3eb897a

Sbhat2026 Claude Sonnet 4.6 commited on

deploy mammal_enriched v3.2: insect=0.9542 mammal=0.5715 CAFA5-evaluated
2c19846

Sbhat2026 Claude Sonnet 4.6 commited on

perf: ESM embedding cache + 1500aa limit, add research scripts
7f7a890

Sbhat2026 Claude Sonnet 4.6 commited on

Fix compute_dynamic_cap: lower rel_gap threshold and abs_cap
c5d88b1

Sbhat2026 Claude Sonnet 4.6 commited on

fix: skip corrupted checkpoints instead of degrading silently
3d95894

Sbhat2026 Claude Sonnet 4.6 commited on

fix: resolve embedding dimensions issue for supp_res2 predictions
dd6b35e

Sbhat2026 Claude Sonnet 4.6 commited on

Update server.py: v3-fixed model priority, generalization API + UI
83c0418
verified

Sbhat2026 commited on

fix: revert to improved model, add top-30 prediction cap
b91bbd2
verified

Sbhat2026 commited on

feat: non-AA validation, DNA detection, /api/structure endpoint
dd240f4
verified

Sbhat2026 commited on

feat: v3 model support, GO hierarchy, supplemented features, updated UI
756ffb3

Sbhat2026 Claude Sonnet 4.6 commited on

Update server.py
48c114c
verified

Sbhat2026 commited on

Update server.py
e4f91fb
verified

Sbhat2026 commited on

fix: add client+server input validation and GO hierarchy filtering
6497d29

Sbhat2026 commited on

fix: add client+server input validation and GO hierarchy filtering
524ce0a

Sbhat2026 commited on

feat: input validation,
3357bf6

Sbhat2026 commited on

fix mlb load order again
b938135

Sbhat2026 commited on

fix mlb load order again
fce0ea0

Sbhat2026 commited on

fix mlb load order again
05e2a7c

Sbhat2026 commited on

validate sequences, reject invalid AA with clear error message
ce34577

Sbhat2026 commited on

validate sequences, reject invalid AA with clear error message
8e57bcf

Sbhat2026 commited on

fix mlb load order
64a8163

Sbhat2026 commited on

fix mlb load order, insect demos, updated GO names
27ac772

Sbhat2026 commited on

canonical GO names, clickable GO links, demo sequences
42e0c5b

Sbhat2026 commited on

fix all model loading issues
ac9bf0a

Sbhat2026 commited on

fix model arch to match baseline_res keys
dbebe3e

Sbhat2026 commited on

pair RecoveredBaselineModel with baseline_res.pth
d447693

Sbhat2026 commited on

switch to baseline ESM-only model
e68b7ef

Sbhat2026 commited on

revert to correct model architecture
7acac14

Sbhat2026 commited on

fix model architecture to match checkpoint
c30798e

Sbhat2026 commited on

fix checkpoint key unwrapping
24ed781

Sbhat2026 commited on

Initial clean deployment
331002c

Sbhat2026 commited on