| --- |
| license: mit |
| library_name: pyaging |
| tags: |
| - pyaging |
| - aging-clock |
| - biology |
| - chromatin-accessibility |
| --- |
| |
| # ocampoatac2 |
|
|
| Alternate packaged implementation loaded from the authors' GitHub final_coefs.tsv; it represents the same uncorrected final ATAC-clock target, not a deployable cell-composition-corrected clock. |
| |
| | | | |
| |---|---| |
| | **Predicts** | chronological age | |
| | **Species** | Homo sapiens | |
| | **Tissue** | peripheral blood mononuclear cells | |
| | **Data type** | chromatin accessibility | |
| | **Model type** | elastic net regression | |
| | **Year** | 2023 | |
| |
| ## Use with pyaging |
| |
| ```python |
| import pyaging as pya |
| |
| pya.pred.predict_age(adata, ["ocampoatac2"]) |
| ``` |
| |
| Browse every clock in the [pyaging Clock Catalogue](https://pyaging.readthedocs.io). |
| |
| ## Citation |
| |
| Morandini, F. et al. ATAC-clock: An aging clock based on chromatin accessibility. GeroScience 46, 635-650 (2024). |
| |
| https://doi.org/10.1007/s11357-023-00986-0 |
| |
