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The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 9 new columns ({'sigma', 'full_aa_seq', 'aa_seq', 'WT', 'growthrate', 'growthrate_sigma', 'Nham_aa', 'name', 'fitness'}) and 2 missing columns ({'mutation', 'label'}).
This happened while the csv dataset builder was generating data using
hf://datasets/xulab-research/MutCleaner/ArchStabMS1E10_Epistasis_Dataset/ArchStabMS1E10_Epistasis_Dataset.csv (at revision be03c16e324100a77da92748037730f4ca78d4e1), ['hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/Antitoxin_ParD3_Epistasis_Dataset/Antitoxin_ParD3_Epistasis_Dataset.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/ArchStabMS1E10_Epistasis_Dataset/ArchStabMS1E10_Epistasis_Dataset.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/Chitosanase_dTm_Dataset/Chitosanase_dTm_Dataset.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/Human_Myoglobin_Epistasis_Dataset/Human_Myoglobin_Epistasis_Dataset.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/MGnify_ddG_Dataset/MGnify_ddG_Dataset.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/ProteinGym_DMS_Substitutions_Dataset/DMS_ProteinGym_substitutions.zip', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/RBD_ACE2_Dataset/SARS-CoV-2-RBD_DMS_Omicron-EG5-FLip-BA286_bc_binding.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/RBD_ACE2_Dataset/SARS-CoV-2-RBD_DMS_Omicron-XBB-BQ_bc_binding.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/RBD_ACE2_Dataset/SARS-CoV-2-RBD_DMS_Omicron_bc_binding.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/RBD_ACE2_Dataset/SARS-CoV-2-RBD_DMS_variants_bc_binding.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/RBD_ACE2_Dataset/SARS-CoV-2-RBD_Delta_bc_binding.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/RBD_Antibody_Dataset/SARS-CoV-2-RBD_MAP_Moderna.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/RBD_Antibody_Dataset/SARS-CoV-2-RBD_MAP_Rockefeller.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/RBD_Antibody_Dataset/SARS-CoV-2-RBD_MAP_Vir_mAbs.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/TrpB_Epistasis_Dataset/TrpB_Epistasis_Dataset.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/cDNA_Proteolysis_Dataset/Tsuboyama2023_Dataset2_Dataset3_20230416.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/dTm_Dataset/S4346.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/dTm_Dataset/S571.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/ddG_Dataset/M1261.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/ddG_Dataset/S461.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/ddG_Dataset/S669.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/ddG_Dataset/S783.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/ddG_Dataset/S8754.csv']
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1837, in _prepare_split_single
writer.write_table(table)
~~~~~~~~~~~~~~~~~~^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/arrow_writer.py", line 765, in write_table
self._write_table(pa_table, writer_batch_size=writer_batch_size)
~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/arrow_writer.py", line 773, in _write_table
pa_table = table_cast(pa_table, self._schema)
File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2369, in table_cast
return cast_table_to_schema(table, schema)
File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2297, in cast_table_to_schema
raise CastError(
...<3 lines>...
)
datasets.table.CastError: Couldn't cast
aa_seq: string
Nham_aa: int64
WT: double
fitness: double
sigma: double
growthrate: double
growthrate_sigma: double
name: string
full_aa_seq: string
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 1319
to
{'mutation': Value('string'), 'label': Value('float64')}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1369, in compute_config_parquet_and_info_response
parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
~~~~~~~~~~~~~~~~~~~~~~~~~^
builder, max_dataset_size_bytes=max_dataset_size_bytes
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
)
^
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 948, in stream_convert_to_parquet
builder._prepare_split(split_generator=splits_generators[split], file_format="parquet")
~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1683, in _prepare_split
for job_id, done, content in self._prepare_split_single(
~~~~~~~~~~~~~~~~~~~~~~~~~~^
gen_kwargs=gen_kwargs, job_id=job_id, **_prepare_split_args
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
):
^
File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1839, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
...<4 lines>...
)
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 9 new columns ({'sigma', 'full_aa_seq', 'aa_seq', 'WT', 'growthrate', 'growthrate_sigma', 'Nham_aa', 'name', 'fitness'}) and 2 missing columns ({'mutation', 'label'}).
This happened while the csv dataset builder was generating data using
hf://datasets/xulab-research/MutCleaner/ArchStabMS1E10_Epistasis_Dataset/ArchStabMS1E10_Epistasis_Dataset.csv (at revision be03c16e324100a77da92748037730f4ca78d4e1), ['hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/Antitoxin_ParD3_Epistasis_Dataset/Antitoxin_ParD3_Epistasis_Dataset.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/ArchStabMS1E10_Epistasis_Dataset/ArchStabMS1E10_Epistasis_Dataset.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/Chitosanase_dTm_Dataset/Chitosanase_dTm_Dataset.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/Human_Myoglobin_Epistasis_Dataset/Human_Myoglobin_Epistasis_Dataset.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/MGnify_ddG_Dataset/MGnify_ddG_Dataset.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/ProteinGym_DMS_Substitutions_Dataset/DMS_ProteinGym_substitutions.zip', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/RBD_ACE2_Dataset/SARS-CoV-2-RBD_DMS_Omicron-EG5-FLip-BA286_bc_binding.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/RBD_ACE2_Dataset/SARS-CoV-2-RBD_DMS_Omicron-XBB-BQ_bc_binding.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/RBD_ACE2_Dataset/SARS-CoV-2-RBD_DMS_Omicron_bc_binding.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/RBD_ACE2_Dataset/SARS-CoV-2-RBD_DMS_variants_bc_binding.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/RBD_ACE2_Dataset/SARS-CoV-2-RBD_Delta_bc_binding.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/RBD_Antibody_Dataset/SARS-CoV-2-RBD_MAP_Moderna.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/RBD_Antibody_Dataset/SARS-CoV-2-RBD_MAP_Rockefeller.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/RBD_Antibody_Dataset/SARS-CoV-2-RBD_MAP_Vir_mAbs.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/TrpB_Epistasis_Dataset/TrpB_Epistasis_Dataset.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/cDNA_Proteolysis_Dataset/Tsuboyama2023_Dataset2_Dataset3_20230416.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/dTm_Dataset/S4346.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/dTm_Dataset/S571.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/ddG_Dataset/M1261.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/ddG_Dataset/S461.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/ddG_Dataset/S669.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/ddG_Dataset/S783.csv', 'hf://datasets/xulab-research/MutCleaner@be03c16e324100a77da92748037730f4ca78d4e1/ddG_Dataset/S8754.csv']
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
mutation string | label float64 |
|---|---|
D60A:K63A:E79A | 0.658741 |
D60A:K63A:E79C | 0.532164 |
D60A:K63A:E79D | 0.458571 |
D60A:K63A:E79E | 0.850977 |
D60A:K63A:E79F | 0.609473 |
D60A:K63A:E79G | 0.139403 |
D60A:K63A:E79H | 0.585224 |
D60A:K63A:E79I | 0.785455 |
D60A:K63A:E79K | 0.471562 |
D60A:K63A:E79L | 0.774324 |
D60A:K63A:E79M | 0.661621 |
D60A:K63A:E79N | 0.294832 |
D60A:K63A:E79P | 0.01566 |
D60A:K63A:E79Q | 0.723669 |
D60A:K63A:E79R | 0.364286 |
D60A:K63A:E79S | 0.459328 |
D60A:K63A:E79T | 0.620953 |
D60A:K63A:E79V | 0.730902 |
D60A:K63A:E79W | 0.368839 |
D60A:K63A:E79Y | 0.631109 |
D60A:K63A:E79_ | -0.032518 |
D60A:K63C:E79A | 0.444522 |
D60A:K63C:E79C | 0.327151 |
D60A:K63C:E79D | 0.289447 |
D60A:K63C:E79E | 0.732824 |
D60A:K63C:E79F | 0.386886 |
D60A:K63C:E79G | 0.052048 |
D60A:K63C:E79H | 0.352924 |
D60A:K63C:E79I | 0.608678 |
D60A:K63C:E79K | 0.293382 |
D60A:K63C:E79L | 0.598568 |
D60A:K63C:E79M | 0.438353 |
D60A:K63C:E79N | 0.224747 |
D60A:K63C:E79P | -0.006473 |
D60A:K63C:E79Q | 0.509952 |
D60A:K63C:E79R | 0.246931 |
D60A:K63C:E79S | 0.255793 |
D60A:K63C:E79T | 0.399621 |
D60A:K63C:E79V | 0.55228 |
D60A:K63C:E79W | 0.236879 |
D60A:K63C:E79Y | 0.370401 |
D60A:K63C:E79_ | 0.017394 |
D60A:K63D:E79A | 0.154973 |
D60A:K63D:E79C | 0.176214 |
D60A:K63D:E79D | 0.076295 |
D60A:K63D:E79E | 0.343988 |
D60A:K63D:E79F | 0.142268 |
D60A:K63D:E79G | 0.072637 |
D60A:K63D:E79H | 0.116525 |
D60A:K63D:E79I | 0.248765 |
D60A:K63D:E79K | 0.108472 |
D60A:K63D:E79L | 0.240179 |
D60A:K63D:E79M | 0.188746 |
D60A:K63D:E79N | 0.047293 |
D60A:K63D:E79P | -0.011673 |
D60A:K63D:E79Q | 0.191845 |
D60A:K63D:E79R | 0.06051 |
D60A:K63D:E79S | 0.092425 |
D60A:K63D:E79T | 0.145856 |
D60A:K63D:E79V | 0.212629 |
D60A:K63D:E79W | 0.149345 |
D60A:K63D:E79Y | 0.14764 |
D60A:K63D:E79_ | 0.023025 |
D60A:K63E:E79A | 0.666043 |
D60A:K63E:E79C | 0.576696 |
D60A:K63E:E79D | 0.438163 |
D60A:K63E:E79E | 0.871522 |
D60A:K63E:E79F | 0.646528 |
D60A:K63E:E79G | 0.195222 |
D60A:K63E:E79H | 0.604512 |
D60A:K63E:E79I | 0.796378 |
D60A:K63E:E79K | 0.468999 |
D60A:K63E:E79L | 0.79401 |
D60A:K63E:E79M | 0.694945 |
D60A:K63E:E79N | 0.278543 |
D60A:K63E:E79P | 0.015766 |
D60A:K63E:E79Q | 0.727537 |
D60A:K63E:E79R | 0.352154 |
D60A:K63E:E79S | 0.479716 |
D60A:K63E:E79T | 0.665442 |
D60A:K63E:E79V | 0.760189 |
D60A:K63E:E79W | 0.371311 |
D60A:K63E:E79Y | 0.661322 |
D60A:K63E:E79_ | 0.054487 |
D60A:K63F:E79A | 0.245615 |
D60A:K63F:E79C | 0.192349 |
D60A:K63F:E79D | 0.181583 |
D60A:K63F:E79E | 0.440881 |
D60A:K63F:E79F | 0.183191 |
D60A:K63F:E79G | -0.000538 |
D60A:K63F:E79H | 0.207591 |
D60A:K63F:E79I | 0.37522 |
D60A:K63F:E79K | 0.145075 |
D60A:K63F:E79L | 0.348505 |
D60A:K63F:E79M | 0.21799 |
D60A:K63F:E79N | 0.079387 |
D60A:K63F:E79P | -0.060889 |
D60A:K63F:E79Q | 0.217185 |
D60A:K63F:E79R | 0.131848 |
D60A:K63F:E79S | 0.151942 |
End of preview.
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