text string | meta dict |
|---|---|
/* gcPresAbs.c - Calculate probability of expression in an mrna
sample given a cel file of results. Use empiracal rank within
a gc population to estimate probability and fisher's method
of combining probabilities to calculate probe set probability.
*/
#include "common.h"
#include "hash.h"
#include "linefile.h"... | {
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/*----------------------------------------------------------------------------*/
/* */
/* quad_golden.c */
/* ... | {
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/* matrix/gsl_matrix_ushort.h
*
* Copyright (C) 1996, 1997, 1998, 1999, 2000 Gerard Jungman, Brian Gough
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License... | {
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#define MPICH_SKIP_MPICXX 1
#define OMPI_SKIP_MPICXX 1
#include <Python.h>
#include <petsc.h>
#include "libpetsc4py/libpetsc4py.c"
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//
// Created by pedram pakseresht on 2/18/21.
//
static char help[] = "Simple Petsc program";
#include <petsc.h>
#include "incompressibleFlow.h"
#include "mesh.h"
#include "particleInertial.h"
#include "particles.h"
#include "particleInitializer.h"
#include "petscviewer.h"
static PetscErrorCode uniform_u(PetscInt ... | {
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/* Author: Lisandro Dalcin */
/* Contact: dalcinl@gmail.com */
#ifndef PETSC4PY_H
#define PETSC4PY_H
#include <Python.h>
#include <petsc.h>
#include "petsc4py.PETSc_api.h"
static int import_petsc4py(void) {
if (import_petsc4py__PETSc() < 0) goto bad;
return 0;
bad:
return -1;
}
#endif /* !PETSC4PY_H */
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#if !defined(MAIN_H_INCLUDED)
#define MAIN_H_INCLUDED
#include "Exceptions.h"
#include <cstdlib>
#include <filesystem>
#include <gsl/gsl>
#include <iostream>
#include <stdexcept>
template <typename T>
int commonMain(size_t argCount, const char*const*const argList)
{
using ::std::filesystem::path;
using ::gsl::mak... | {
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#include <stdio.h>
#include <gsl/gsl_multiset.h>
int
main (void)
{
gsl_multiset * c;
size_t i;
printf ("All multisets of {0,1,2,3} by size:\n") ;
for (i = 0; i <= 4; i++)
{
c = gsl_multiset_calloc (4, i);
do
{
printf ("{");
gsl_multiset_fprintf (stdout, c, " %u");
... | {
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/* multifit/fdjac.c
*
* Copyright (C) 2013 Patrick Alken
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 3 of the License, or (at
* your option) any later version.
*
... | {
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#pragma once
#include "parser.h"
#include "format.h"
#include "nameutils.h"
#include "utils.h"
#include <sfun/string_utils.h>
#include <cmdlime/errors.h>
#include <gsl/gsl>
#include <algorithm>
#include <sstream>
#include <iomanip>
#include <functional>
#include <cassert>
namespace cmdlime::detail{
namespace str = sfu... | {
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/** \file IRLS.h
*
* `IRLS' is a C++ implementation of the IRLS algorithm for GLM
* Copyright (C) 2013 Xioaquan Wen, Timothee Flutre
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either vers... | {
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/**
* Cascade simulation based on pair production and bremsstrahlung interactions
*
* copyright (C) 2007
* the icecube collaboration
*
* $Id: I3CascadeSimulation.h 35916 2007-08-23 09:34:12Z bvoigt $
*
* @version $Revision: 35916 $
* @date $LastChangedDate: 2007-08-23 03:34:12 -0600 (Thu, 23 Aug 2007) $
* @a... | {
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#include <config.h>
#include <stdio.h>
#include <math.h>
#include <gsl/gsl_errno.h>
#include <gsl/gsl_vector.h>
#include <gsl/gsl_blas.h>
#include <gsl/gsl_test.h>
#include <gsl/gsl_wavelet.h>
#include <gsl/gsl_wavelet2d.h>
#define N_BS 11
double urand (void);
double
urand (void)
{
static unsigned long int x = 1... | {
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/*
* -----------------------------------------------------------------
* Partially Stirred Reaction Library --- pasr_lib.h
* Version: 1.6180
* Date: Nov 16, 2010
* -----------------------------------------------------------------
* Programmer: Americo Barbosa da Cunha Junior
* americo.cunhajr@gmail.c... | {
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#include <stdio.h>
#include <stdlib.h>
#include <math.h>
#include <string.h>
#include <gsl/gsl_errno.h>
#include <gsl/gsl_odeiv2.h>
#include <gsl/gsl_spline.h>
#include <gsl/gsl_integration.h>
#include <gsl/gsl_roots.h>
#include "ccl.h"
#include "ccl_params.h"
/* --------- ROUTINE: h_over_h0 ---------
INPUT: scale f... | {
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#ifndef EXECUTE_INCLUDE
#define EXECUTE_INCLUDE
#include <filesystem>
#include <string>
#include <vector>
#include <gsl/string_span>
#include "path.h"
namespace execHelper {
namespace test {
namespace baseUtils {
namespace execution {
using CommandLine = std::vector<std::string>;
int execute(const CommandLine& com... | {
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/*=========================================================================
Library : Image Registration Toolkit (IRTK)
Module : $Id$
Copyright : Imperial College, Department of Computing
Visual Information Processing (VIP), 2008 onwards
Date : $Date$
Version : $Revision$
Changes ... | {
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/*
* Copyright 2014 Google Inc. All rights reserved.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicab... | {
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#include <gsl/span>
namespace engine
{
template <class ElementType, std::ptrdiff_t Extent = gsl::dynamic_extent>
using span = gsl::span<ElementType, Extent>;
}
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/*
* -----------------------------------------------------------------
* isat_lib.h
* In Situ Adaptive Tabulation Library
* Version: 2.0
* Last Update: Nov 3, 2019
*
* Programmer: Americo Barbosa da Cunha Junior
* americo.cunhajr@gmail.com
* ---------------------------------------------------------... | {
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/* specfunc/bessel_i.c
*
* Copyright (C) 1996, 1997, 1998, 1999, 2000 Gerard Jungman
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or (at
* your opt... | {
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/*
* BSD 3-Clause License
*
* Copyright (c) 2018, mtezych
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* * Redistributions of source code must retain the above copyright notice,
* ... | {
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/* segSiteHMM v. 0.1 !!!
/
/
/ Andrew Kern 3/14/07
*/
#include "../hmm/hmm.h"
#include "../hmm/adkGSL.h"
#include "../hmm/popGenTools.h"
#include "segSites.h"
#include "segSiteHMM.h"
#include <math.h>
#include <assert.h>
#include <string.h>
#include <gsl/gsl_vector.h>
#include <gsl/gsl_randist.h>
#include <gsl/gsl_c... | {
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/**
*
* @file pcunmqr_blgtrd.c
*
* PLASMA auxiliary routines
* PLASMA is a software package provided by Univ. of Tennessee,
* Univ. of California Berkeley and Univ. of Colorado Denver
*
* @version 2.6.0
* @author Azzam Haidar
* @date 2011-05-15
* @generated c Tue Jan 7 11:45:13 2014
*
**/
#include <lap... | {
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#include <string.h>
#include <gsl/gsl_rng.h>
#include <gsl/gsl_randist.h>
#include <gsl/gsl_math.h>
#include <math.h>
#include <options/options.h>
#include "../csm/csm_all.h"
struct ld_exp_tro1_params {
int seed;
double max_xy_error;
double max_theta_error_deg;
const char* file_input;
const char* file_output1... | {
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/* These tests are based on the NIST Statistical Reference Datasets
See http://www.nist.gov/itl/div898/strd/index.html for more
information. */
#include <config.h>
#include <stdlib.h>
#include <gsl/gsl_math.h>
#include <gsl/gsl_test.h>
#include <gsl/gsl_multifit.h>
#include <gsl/gsl_multifit_nlin.h>
#include <gs... | {
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/*
NAME:
minmax
PURPOSE:
returns the (finite) minimum and the maximum of a vector which is the row/column of a matrix
CALLING SEQUENCE:
minmax(gsl_matrix * q, int row, bool isrow, double * min, double * max, bool partial, int partial_indx[3])
INPUT:
q - matrix which holds the vect... | {
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//Roots of polynomial using compan matrix, as in Matlab/Octave.
//This does roots for each vector X.
//The roots are from an eig using LAPACKE,
//and are tested to match Octave, except sometimes for sorting order.
//For the complex case with non-contiguous vecs in X and Y,
//the answers are correct except for a myster... | {
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/*System includes*/
#include <stdlib.h>
#include <stdio.h>
#include <math.h>
#include <string.h>
/*GSL includes*/
#include <gsl/gsl_vector.h>
#include <gsl/gsl_matrix.h>
#include <gsl/gsl_rng.h>
#include <gsl/gsl_randist.h>
#include <gsl/gsl_math.h>
#include <gsl/gsl_sf.h>
#include <gsl/gsl_integration.h>
#include <gs... | {
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/* interpolation/spline2d.c
*
* Copyright 2012 David Zaslavsky
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 3 of the License, or (at
* your option) any later version... | {
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#include "np.h"
#include "main.h"
#include "argv.h"
#include "memory.h"
#include "utf8.h"
#include "module_categorical.h"
#include "module_lde.h"
#include <stdlib.h>
#include <string.h>
#include <math.h>
#include <float.h>
#include <gsl/gsl_sf.h>
#include "gslsupp.h"
#include "sort.h"
#ifndef TEST_DEACTIVATE
# ... | {
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/* vector/gsl_vector_complex_double.h
*
* Copyright (C) 1996, 1997, 1998, 1999, 2000 Gerard Jungman, Brian Gough
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the... | {
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#ifndef __BLAS_H__
#define __BLAS_H__
#define sgemm sgemm_
#define dgemm dgemm_
#define ssteqr ssteqr_
#define dsteqr dsteqr_
#define dgemv dgemv_
#define ddot ddot_
#define daxpy daxpy_
#define dscal dscal_
#define dasum dasum_
#ifdef __cplusplus
extern "C"{
#endif
//#include <cblas.h>
//#include <clapack... | {
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/****************************************************************************/
/* */
/* File: typedefs.h */
/* */
/* P... | {
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#include <stdlib.h>
#include <gsl/gsl_vector.h>
#include "../include/type.h"
#include "../include/global.h"
#include "../include/cthreadpool.h"
void *pool_thread(void *arg) {
threadpool_t *pool = (threadpool_t*)arg;
task_t task;
int head;
while(1) {
pthread_mutex_lock(&(pool->pool_lock));
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/***************************************************************************
Copyright (c) 2014, The OpenBLAS Project
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are
met:
1. Redistributions of source code must... | {
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//-*-C++-*-
/***************************************************************************
*
* Copyright (C) 2008 by Willem van Straten
* Licensed under the Academic Free License version 2.1
*
***************************************************************************/
#ifndef __Pulsar_Interpolation_h
#define _... | {
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static char help[] =
"ODE system solver example using TS, but with Jacobian. Sets TS type to\n"
"implicit Crank-Nicolson. Compare ode.c.\n\n";
#include <petsc.h>
extern PetscErrorCode ExactSolution(PetscReal, Vec);
extern PetscErrorCode FormRHSFunction(TS, PetscReal, Vec, Vec, void*);
extern PetscErrorCode FormRHSJ... | {
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#ifndef INCLUDED_TELEPATH_MATRIX_H
#define INCLUDED_TELEPATH_MATRIX_H
#include <cblas.h>
#include "telepath/blas/traits.h"
namespace telepath{
enum ORDER {
ROW_MAJOR = CblasRowMajor,
COL_MAJOR = CblasColMajor
};
enum TRANSPOSE {
NONE = CblasNoTrans,
TRANS = CblasTrans,
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#include <stdio.h>
#include <gsl/gsl_fit.h>
int main (void)
{
int n = 11;
double x[11] = {10.0, 8.0, 13.0, 9.0, 11.0,
14.0 ,6.0, 4.0 , 12.0,7.0,5.0};
double y[11] = {8.04, 6.95,7.68, 8.81, 8.33,
9.96, 7.24,4.26,10.84, 4.82,5.68 };
double c0, c1, cov00, cov01, c... | {
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#include <stdlib.h>
#include <stdio.h>
//#define VERY_VERBOSE
#define MSG(x) { printf(x); fflush(stdout); }
#define MSGF(x) { printf x ; fflush(stdout); }
#include "buffer.h"
static void test_buffer()
{
}
#include "array.h"
static void test_array()
{
int k;
const int * p;
const int * q;
OLIO_ARRAY_STACK(st, i... | {
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#pragma once
#include "AsyncSystem.h"
#include "IAssetRequest.h"
#include "Library.h"
#include <gsl/span>
#include <cstddef>
#include <memory>
#include <string>
#include <vector>
namespace CesiumAsync {
class AsyncSystem;
/**
* @brief Provides asynchronous access to assets, usually files downloaded via
* HTTP.
... | {
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/* -*- Mode:C++; c-file-style:"gnu"; indent-tabs-mode:nil; -*- */
/*
* Copyright (c) 2010 The Boeing Company
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License version 2 as
* published by the Free Software Foundation;
*
* This program i... | {
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/*
* This file is part of the Visual Computing Library (VCL) release under the
* license.
*
* Copyright (c) 2017 Basil Fierz
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software with... | {
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/*
# This file is part of the Astrometry.net suite.
# Licensed under a 3-clause BSD style license - see LICENSE
*/
#ifndef AN_GSL_UTILS_H
#define AN_GSL_UTILS_H
#include <gsl/gsl_matrix_double.h>
#include <gsl/gsl_vector_double.h>
void gslutils_use_error_system();
/**
Solves a least-squares matrix equation
A X_i ... | {
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// Copyright (c) Microsoft Corporation.
// Licensed under the MIT License.
#pragma once
#include "Data\Intrinsics.h"
#include "Data\Pose.h"
#include "Device/CameraCalibration.h"
#include "MageSettings.h"
#include "Device\IMUCharacterization.h"
#include "Map\Map.h"
#include "Map\ThreadSafeMap.h"
#include "Bow\BaseBow.... | {
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/*! /file global.h
* /brief Declarations of global variables and functions. */
#ifndef GLOBAL_H
#define GLOBAL_H
#ifdef COOLING_CPU
#include <gsl/gsl_spline.h>
#include <gsl/gsl_spline2d.h>
#endif
#if PRECISION == 1
#ifndef FLOAT_TYPEDEF_DEFINED
typedef float Real;
#endif //FLOAT_TYPEDEF_DEFINED
#endif //PRECIS... | {
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/**
*
* \file gpsins.c - Implements an integrated GPS-Inertial navigation system.
*
* This program implements an integrated GPS-Inertial navigation system. Data is
* retrieved from shared memory and processed in two threads. The high speed thread
* implements the inertial navigation mechanisation. The low s... | {
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/*
Copyright 2010-2011, D. E. Shaw Research.
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are
met:
* Redistributions of source code must retain the above copyright
notice, this list of conditions, and the f... | {
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/* histogram/get.c
*
* Copyright (C) 1996, 1997, 1998, 1999, 2000 Brian Gough
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or (at
* your option) an... | {
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#include "lib.h"
#include "defines.h"
#include "milosUtils.h"
#include "time.h"
#include <complex.h>
#include <fftw3.h> //siempre a continuacion de complex.h
#include <math.h>
#include <gsl/gsl_spline.h>
#include <gsl/gsl_math.h>
#include <gsl/gsl_eigen.h>
#include <complex.h>
#include <fftw3.h> //siempre a continuaci... | {
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/**
*
* @file core_dlansy.c
*
* PLASMA core_blas kernel
* PLASMA is a software package provided by Univ. of Tennessee,
* Univ. of California Berkeley and Univ. of Colorado Denver
*
* @version 2.6.0
* @author Julien Langou
* @author Henricus Bouwmeester
* @author Mathieu Faverge
* @date 2010-11-15
* @gen... | {
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/* $Id$ */
/*--------------------------------------------------------------------*/
/*; Copyright (C) 2003-2009 */
/*; Associated Universities, Inc. Washington DC, USA. */
/*; */
/*; This progra... | {
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/* -*- Mode: C++; tab-width: 4; c-basic-offset: 4; indent-tabs-mode: nil -*- */
/*
* Copyright 2017 Couchbase, Inc
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* h... | {
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/*************************************************************************************
Copyright 2010 Philip Waldron
This file is part of BayRate.
BayRate is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software F... | {
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#include <gsl/gsl_matrix.h>
#include <gsl/gsl_vector_double.h>
#include <gsl/gsl_vector.h>
#include "cimple_mpc_computation.h"
/**
* Set up weight matrices for the quadratic problem
*/
polytope * set_cost_function(gsl_matrix *P,
gsl_vector *q,
gsl_matrix *L,
... | {
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#include <stdlib.h>
#include <gsl/gsl_math.h>
#include <gsl/gsl_monte.h>
#include <gsl/gsl_rng.h>
#include <gsl/gsl_complex.h>
#include <gsl/gsl_matrix.h>
#include <gsl/gsl_complex_math.h>
#include <gsl/gsl_cblas.h>
#include <gsl/gsl_blas.h>
#ifndef gauge_config
#include "config.h"
#define gauge_config 1
#define sq(x... | {
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#ifndef _MARKET_INTEGRATION_
#define _MARKET_INTEGRATION_
#include <gsl/gsl_integration.h>
typedef struct{
double (*function)(double *x, size_t n, void * p);
void *params;
} nquad_function;
typedef void (*multi_integration_type)(int n, nquad_function *f, double *lb, double *ub, double epsabs,
double epsr... | {
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//
// Author
// luncliff@gmail.com
//
#pragma once
#ifndef _NDCAM_INCLUDE_H_
#define _NDCAM_INCLUDE_H_
#include <gsl/gsl>
#include <android/hardware_buffer.h>
#include <android/native_window.h>
#include <android/native_window_jni.h>
#include <media/NdkImage.h>
#include <media/NdkImageReader.h>
#include <camer... | {
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#include <stdio.h>
#include <gsl/gsl_errno.h>
#include <gsl/gsl_sf_bessel.h>
int
main (void)
{
double x = 5.0;
gsl_sf_result result;
double expected = -0.17759677131433830434739701;
int status = gsl_sf_bessel_J0_e (x, &result);
printf ("status = %s\n", gsl_strerror(status));
printf ("J0(5.0) = %.18f\... | {
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// This random generator is a C++ wrapper for the GNU Scientific Library
// Copyright (C) 2001 Torbjorn Vik
// This program is free software; you can redistribute it and/or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation; either version 2 of the Licen... | {
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/*
* gsl_headers.h
* Pi4U
*
* Created by Panagiotis Hadjidoukas on 1/1/14.
* Copyright 2014 ETH Zurich. All rights reserved.
*
*/
#ifndef _GSL_HEADERS_
#define _GSL_HEADERS_ 1
#include <gsl/gsl_errno.h>
#include <gsl/gsl_math.h>
#include <gsl/gsl_min.h>
#include <gsl/gsl_multimin.h>
#include <gsl/gsl_rng.... | {
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//
// gemv.h
// Linear Algebra Template Library
//
// Created by Rodney James on 12/12/11.
// Copyright (c) 2011 University of Colorado Denver. All rights reserved.
//
#ifndef _gemv_h
#define _gemv_h
/// @file gemv.h Computes general matrix-vector products.
#include <cctype>
#include "latl.h"
namespace LATL
{
... | {
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#include <sbmf/sbmf.h>
#define SBMF_UNUSED(x) \
(void)x
#include <omp.h>
#include <cblas.h>
#include <lapacke.h>
#include <arpack/arpack.h>
/* #include <arpack/debug_c.h> */
/* c stdlib */
#include <stdio.h> /* sprintf, fopen, fprintf, fread */
#include <stdlib.h> /* malloc */
#include <string.h> /* memcpy,memset ... | {
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#include <stdio.h>
#include <gsl/gsl_multifit.h>
int
main (int argc, char **argv)
{
int i, n;
double xi, yi, ei, chisq;
gsl_matrix *X, *cov;
gsl_vector *y, *w, *c;
if (argc != 2)
{
fprintf (stderr,"usage: fit n < data\n");
exit (-1);
}
n = atoi (argv[1]);
X = gsl_matrix_alloc (n, 3... | {
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///////////////////////////////////////////////////////////////////////////////
//
// Copyright (c) 2015 Microsoft Corporation. All rights reserved.
//
// This code is licensed under the MIT License (MIT).
//
// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
// IMPLIED, INCLUDING BUT NOT LIM... | {
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/* C functions for running vbgmm from Cython*/
/*System includes*/
#include <stdlib.h>
#include <stdio.h>
#include <math.h>
#include <string.h>
#include <sys/stat.h>
#include <float.h>
/*GSL includes*/
#include <gsl/gsl_vector.h>
#include <gsl/gsl_matrix.h>
#include <gsl/gsl_rng.h>
#include <gsl/gsl_randist.h>
#inclu... | {
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/* vector/gsl_vector_ulong.h
*
* Copyright (C) 1996, 1997, 1998, 1999, 2000, 2007 Gerard Jungman, Brian Gough
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 3 of the Li... | {
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/* specfunc/gsl_sf_bessel.h
*
* Copyright (C) 1996, 1997, 1998, 1999, 2000 Gerard Jungman
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 3 of the License, or (at
* you... | {
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/* eigen/jacobi.c
*
* Copyright (C) 1996, 1997, 1998, 1999, 2000 Gerard Jungman
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or (at
* your option) ... | {
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//Gets deltas (first order differences) of X.
//Only the deltas are output in Y.
//I implement this just like FIR for speed and shorter code,
//except non-causal and mid-sample of B is 0,
//so I don't explicitly make B (e.g., B[n] just equals sc*n).
//It seems that Kaldi and others use the same method for edge sample... | {
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#ifndef __GSL_WRAPPER_H__
#define __GSL_WRAPPER_H__
#include <gsl/gsl_vector.h>
#include <gsl/gsl_matrix.h>
#include <iostream>
#include <cassert>
namespace dvrlib{
struct gsl_exception {
const char* reason;
const char* file;
int line;
int gsl_errno;
};
void gsl_enable_exceptions();
class vector_view;
c... | {
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#ifndef S3D_CV_IMAGE_OPERATION_IMAGE_OPERATION_H
#define S3D_CV_IMAGE_OPERATION_IMAGE_OPERATION_H
#include <gsl/gsl>
namespace cv {
class Mat;
}
namespace s3d {
struct StanResults;
}
namespace s3d {
namespace image_operation {
class ImageOperation {
public:
bool applyOnImagesIfEnabled(cv::Mat *leftImage, cv:... | {
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//
// symm.h
// Linear Algebra Template Library
//
// Created by Rodney James on 1/2/12.
// Copyright (c) 2012 University of Colorado Denver. All rights reserved.
//
#ifndef _symm_h
#define _symm_h
/// @file symm.h Performs general symmetric matrix-matrix multiplication.
#include <cctype>
#include "latl.h"
name... | {
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#include <petsc.h>
#include "um.h"
PetscErrorCode UMInitialize(UM *mesh) {
mesh->N = 0;
mesh->K = 0;
mesh->P = 0;
mesh->loc = NULL;
mesh->e = NULL;
mesh->bf = NULL;
mesh->ns = NULL;
return 0;
}
PetscErrorCode UMDestroy(UM *mesh) {
PetscErrorCode ierr;
ierr = VecDestroy(&(mesh->... | {
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#include <stdio.h>
#include <malloc.h>
#include <stdlib.h>
#include <stdbool.h>
#include <gsl/gsl_math.h>
#include <gsl/gsl_eigen.h>
#include <gsl/gsl_linalg.h>
#include <gsl/gsl_matrix.h>
#include <gsl/gsl_blas.h>
#include <functions.h>
#define FOR(i,n) for(i=0;i<n;i++)
typedef double DD, LD;
typedef long... | {
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/* linalg/test_qr_band.c
*
* Copyright (C) 2020 Patrick Alken
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 3 of the License, or (at
* your option) any later version.
... | {
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#pragma once
#include <nextalign/nextalign.h>
#include <gsl/string_span>
#include <string>
#include <vector>
template<typename Letter>
using SequenceSpan = gsl::basic_string_span<Letter, gsl::dynamic_extent>;
using NucleotideSequenceSpan = SequenceSpan<Nucleotide>;
using AminoacidSequenceSpan = SequenceSpan<Amino... | {
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/* specfunc/bessel_Kn.c
*
* Copyright (C) 1996, 1997, 1998, 1999, 2000 Gerard Jungman
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 3 of the License, or (at
* your op... | {
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#include "gemm.h"
#if defined(USE_BLAS)
#include <cblas.h>
#else
// see https://github.com/pjreddie/darknet/blob/master/src/gemm.c
static void gemm_nn(int M, int N, int K, float ALPHA,
float *A, int lda,
float *B, int ldb,
float *C, int ldc)
{
int i;
... | {
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/*
gsl-sprng.h
Code declaring a new GSL random number type "gsl_rng_sprng20"
which is a thin wrapper over the SPRNG 2.0 parallel random
number generator.
To use, just add the line:
#include "gsl-sprng.h"
immediately after the line:
#include <gsl/gsl_rng.h>
near the start of your code. The new type should now be avai... | {
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#include <gsl/gsl_sf_hyperg.h>
#define kl 2
#define ll 3
#define alpha 1
double potential(double x) {
return 0.5 * pow(alpha, 2) *
(kl * (kl - 1) / pow(sin(alpha * x), 2) +
ll * (ll - 1) / pow(cos(alpha * x), 2));
}
double ground_state_energy() { return 0.5 * pow(alpha, 2) * pow(kl + ll, 2); }
do... | {
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/*
* Library: ransampl (random number sampling)
*
* File: sampling1.c
*
* Contents: Draw samples from a given discrete probability distribution;
* specifically: draw representative inhabitants of the nine states
*
* Note: Any modification of this example should be copied to
* the m... | {
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#ifndef MATRIX_H_
#define MATRIX_H_
#include "matrix_funcs.h"
#ifdef NUMPY_INTERFACE
#include <Python.h>
#include <arrayobject.h>
#endif
#include <limits>
#include <assert.h>
#include <stdio.h>
#include <string.h>
#ifdef USE_MKL
#include <mkl.h>
#include <mkl_cblas.h>
#include <mkl_vsl.h>
#include <mkl_vml.h>
#defin... | {
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#ifndef Utilities_H
#define Utilities_H
#include <gsl/gsl_vector.h>
#include <gsl/gsl_matrix.h>
#include <gsl/gsl_multiroots.h>
#include <gsl/gsl_multimin.h>
#include <string>
#include "SM_cxSM.h"
#include "Phases.h"
double MAX(double x[3],int Number);
// For finding the critical points
int CriticalF(const gsl_vector... | {
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/* itersolve.c
*
* Copyright (C) 2014 Patrick Alken
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 3 of the License, or (at
* your option) any later version.
*
* Th... | {
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static char help[] = "Example ablateCore Client using incompressible flow";
/** Example Argumetns
-dm_plex_separate_marker -dm_refine 0 \
-vel_petscspace_degree 2 -pres_petscspace_degree 1 -temp_petscspace_degree 1 \
-dmts_check .001 -ts_max_steps 4 -ts_dt 0.1 \
-ksp_type fgmres -ksp_gmres_restart 10 -ksp_rtol 1.... | {
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/*
* Copyright (c) 2016-2021 lymastee, All rights reserved.
* Contact: lymastee@hotmail.com
*
* This file is part of the gslib project.
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in t... | {
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/* poly/test.c
*
* Copyright (C) 1996, 1997, 1998, 1999, 2000 Brian Gough
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or (at
* your option) any la... | {
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static char help[] = "Stiff ODE system. Compare odejac.c.\n\n";
#include <petsc.h>
/* PYTHON:
import numpy as np
from scipy.linalg import expm
B = np.array([[0, 1, 0], [-1, 0, 0.1], [0, 0, -101]])
y = np.dot(expm(10*B),np.array([1.0,1.0,1.0]).transpose())
print y
RESULT:
[-1.383623 -0.29588643 0. ]
*/
ext... | {
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/***************************************************************************
Copyright (c) 2014, The OpenBLAS Project
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are
met:
1. Redistributions of source code must... | {
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#ifndef UBLAS_LIB_ATLAS_H
#define UBLAS_LIB_ATLAS_H
#include <stdio.h>
#include <ublas_types.h>
#include <cblas.h>
int ubf_init(void **ctx);
int ubf_gemm(void *ctx, ublas_matrix *a, ublas_matrix *b, ublas_matrix *c, double alpha, double beta);
int ubf_free(void *ctx);
#endif | {
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/* linalg/trimult.c
*
* Copyright (C) 2019 Patrick Alken
*
* This is free software; you can redistribute it and/or modify it
* under the terms of the GNU General Public License as published by the
* Free Software Foundation; either version 3, or (at your option) any
* later version.
*
* This source is distribu... | {
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#pragma once
#include <functional>
#include <vector>
#include <map>
#include <gsl/string_span>
class TabFileColumn {
friend class TabFileRecord;
public:
bool IsEmpty() const {
return mValue.size() == 0;
}
operator bool() const {
return !IsEmpty();
}
operator gsl::cstring_span<>() const {
return mValu... | {
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/* $Id$ */
/*--------------------------------------------------------------------*/
/*; Copyright (C) 2004-2020 */
/*; Associated Universities, Inc. Washington DC, USA. */
/*; */
/*; This progr... | {
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/* block/gsl_block_ushort.h
*
* Copyright (C) 1996, 1997, 1998, 1999, 2000 Gerard Jungman, Brian Gough
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, ... | {
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static char help[] =
"Solve the linear biharmonic equation in 2D. Equation is\n"
" Lap^2 u = f\n"
"where Lap = - grad^2 is the positive Laplacian, equivalently\n"
" u_xxxx + 2 u_xxyy + u_yyyy = f(x,y)\n"
"Domain is unit square S = (0,1)^2. Boundary conditions are homogeneous\n"
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#ifndef SIMPROP_UTILS_GSL_H
#define SIMPROP_UTILS_GSL_H
#include <gsl/gsl_deriv.h>
#include <gsl/gsl_errno.h>
#include <gsl/gsl_integration.h>
#include <gsl/gsl_math.h>
#include <gsl/gsl_matrix.h>
#include <gsl/gsl_odeiv2.h>
#include <gsl/gsl_roots.h>
#include <cassert>
#include <cmath>
#include <functional>
#include... | {
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/**
*
* @file qwrapper_chegst.c
*
* PLASMA core_blas quark wrapper
* PLASMA is a software package provided by Univ. of Tennessee,
* Univ. of California Berkeley and Univ. of Colorado Denver
*
* @version 2.6.0
* @author Hatem Ltaief
* @date 2010-11-15
* @generated c Tue Jan 7 11:44:59 2014
*
**/
#includ... | {
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#pragma once
#include <cstdint>
#include <functional>
#include <memory>
#include <sstream>
#include <string>
#include <utility>
#include <vector>
#include <gsl/gsl>
#include <nonstd/optional.hpp>
#include "chainerx/array_body.h"
#include "chainerx/array_fwd.h"
#include "chainerx/array_index.h"
#include "chainerx/arr... | {
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