text stringlengths 0 828 |
|---|
""""""Yield the error messages."""""" |
for msg in self.messages: |
col = getattr(msg, 'col', 0) |
yield msg.lineno, col, (msg.tpl % msg.message_args), msg.__class__" |
1669,"def error(self, line_number, offset, text, check): |
""""""Run the checks and collect the errors."""""" |
code = super(_Report, self).error(line_number, offset, text, check) |
if code: |
self.errors.append((line_number, offset + 1, code, text, check))" |
1670,"def prompt(prompt_string, default=None, secret=False, boolean=False, bool_type=None): |
"""""" |
Prompt user for a string, with a default value |
* secret converts to password prompt |
* boolean converts return value to boolean, checking for starting with a Y |
"""""" |
if boolean or bool_type in BOOLEAN_DEFAULTS: |
if bool_type is None: |
bool_type = 'y_n' |
default_msg = BOOLEAN_DEFAULTS[bool_type][is_affirmative(default)] |
else: |
default_msg = "" (default {val}): "" |
prompt_string += (default_msg.format(val=default) if default else "": "") |
if secret: |
val = getpass(prompt_string) |
else: |
val = input(prompt_string) |
val = (val if val else default) |
if boolean: |
val = val.lower().startswith('y') |
return val" |
1671,"def prop_unc(jc): |
"""""" |
Propagate uncertainty. |
:param jc: the Jacobian and covariance matrix |
:type jc: sequence |
This method is mainly designed to be used as the target for a |
multiprocessing pool. |
"""""" |
j, c = jc |
return np.dot(np.dot(j, c), j.T)" |
1672,"def partial_derivative(f, x, n, nargs, delta=DELTA): |
"""""" |
Calculate partial derivative using central finite difference approximation. |
:param f: function |
:param x: sequence of arguments |
:param n: index of argument derivateve is with respect to |
:param nargs: number of arguments |
:param delta: optional step size, default is :math:`\\epsilon^{1/3}` where |
:math:`\\epsilon` is machine precision |
"""""" |
dx = np.zeros((nargs, len(x[n]))) |
# scale delta by (|x| + 1.0) to avoid noise from machine precision |
dx[n] += np.where(x[n], x[n] * delta, delta) |
# apply central difference approximation |
x_dx = zip(*[xi + (dxi, -dxi) for xi, dxi in zip(x, dx)]) |
return (f(x_dx[0]) - f(x_dx[1])) / dx[n] / 2.0" |
1673,"def jacobian(func, x, nf, nobs, *args, **kwargs): |
"""""" |
Estimate Jacobian matrices :math:`\\frac{\\partial f_i}{\\partial x_{j,k}}` |
where :math:`k` are independent observations of :math:`x`. |
The independent variable, :math:`x`, must be a numpy array with exactly 2 |
dimensions. The first dimension is the number of independent arguments, |
and the second dimensions is the number of observations. |
The function must return a Numpy array with exactly 2 dimensions. The first |
is the number of returns and the second dimension corresponds to the number |
of observations. If the input argument is 2-D then the output should also |
be 2-D |
Constant arguments can be passed as additional positional arguments or |
keyword arguments. If any constant argument increases the number of |
observations of the return value, tile the input arguments to match. |
Use :func:`numpy.atleast_2d` or :func:`numpy.reshape` to get the |
correct dimensions for scalars. |
:param func: function |
:param x: independent variables grouped by observation |
:param nf: number of return in output (1st dimension) |
:param nobs: number of observations in output (2nd dimension) |
:return: Jacobian matrices for each observation |
"""""" |
nargs = len(x) # degrees of freedom |
f = lambda x_: func(x_, *args, **kwargs) |
j = np.zeros((nargs, nf, nobs)) # matrix of zeros |
for n in xrange(nargs): |
j[n] = partial_derivative(f, x, n, nargs) |
# better to transpose J once than transpose partial derivative each time |
# j[:,:,n] = df.T |
return j.T" |
1674,"def jflatten(j): |
"""""" |
Flatten 3_D Jacobian into 2-D. |
"""""" |
nobs, nf, nargs = j.shape |
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