input
stringlengths 10
828
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public class get input type return input type
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returns the desired class of the input object
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public boolean get keep default return keep default
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indicates if the input should be consumed
|
public boolean show parameter return parameter
|
indicates if a user parameter should be defined
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public string to string return input description for input type keep keep default parameter parameter name parameter name
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returns a string representation of this input description
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public void set lower argument bound double lower this lower bound lower
|
since circles are used the upper and lower bounds must be the same
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public void set lower argument bound double lower this bound math max this bound math abs lower
|
since circles are used the upper and lower bounds must be the same
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public void set total number of attributes int number this number of attributes number
|
sets the total number of attributes
|
public void set total number of examples int number this total number number
|
sets the total number of examples
|
public void set lower argument bound double lower
|
since circles are used the upper and lower bounds must be the same
|
public void set process process process this process process register operator this process
|
sets the process
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public boolean should return inner output return true
|
returns true since this operator chain should just return the output of
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public inner operator condition get inner operator condition return new simple chain inner operator condition
|
returns a simple chain condition
|
public boolean get add only additional output return true
|
since the apply methods of the inner operators already add additional
|
public int get max number of inner operators return integer max value
|
returns the highest possible value for the maximum number of innner
|
public int get min number of inner operators return 0
|
returns 0 for the minimum number of innner operators
|
public void add process listener process listener l listener list add l
|
adds an process listener to the list of listeners
|
public void remove process listener process listener l listener list remove l
|
removes an process listener from the list of listeners
|
public void clear listeners listener list clear
|
clears all process listeners
|
private iocontainer evaluate throws operator exception iocontainer container get input copy for int i 0 i get number of operators i container get operator i apply container return container
|
applies the inner operator
|
public void process starts throws operator exception super process starts iterator i listener list iterator while i has next process listener i next process starts this process
|
called at the beginning of the process
|
private void log output string message input stream in throws ioexception buffered reader bin new buffered reader new input stream reader in string line null string buffer buffer new string buffer message while line bin read line null buffer append tools get line separator buffer append line log note buffer to string
|
sends the output to the log service
|
protected void process started operator operator op for process listener listener listener list listener process started operator this process op
|
counts the step and notifies all process listeners
|
protected void process finished operator operator op for process listener listener listener list listener process finished operator this process op
|
counts the step and notifies all process listeners
|
public void process finished throws operator exception super process finished iterator i listener list iterator while i has next process listener i next process ended this process
|
called at the end of the process
|
public double get probability return double na n
|
returns na n since no single probability will be delivered
|
public int get max number of inner operators return 2
|
returns the maximum number of innner operators
|
public int get min number of inner operators return 2
|
returns the minimum number of innner operators
|
protected operator get learner return get operator 0
|
returns the first encapsulated inner operator or operator chain i
|
private operator get evaluator return get operator 1
|
returns the second encapsulated inner operator or operator chain i
|
protected iocontainer learn example set training set throws operator exception return learn result get learner apply new iocontainer new ioobject training set
|
applies the learner first encapsulated inner operator
|
protected iocontainer evaluate example set test set throws operator exception if learn result null throw new runtime exception wrong use of validation chain evaluate example set no preceding invocation of learn example set iocontainer result evaluate test set learn result learn result null return result
|
applies the applier and evaluator second encapsulated inner operator
|
public void add add listener add listener listener add listeners add listener
|
adds the given listener
|
public void remove add listener add listener listener add listeners remove listener
|
removes the given listener
|
public int size return io objects size
|
returns the number of
|
private void fire add event operator child iterator add listener i add listeners iterator while i has next i next operator added child
|
notifies all added add listeners that a new child was added
|
public ioobject get element at int index return io objects get index
|
returns the n th
|
public ioobject remove element at int index return io objects remove index
|
removes and returns the n th
|
public operator clone operator string name operator chain clone operator chain super clone operator name clone operators new vector operator iterator operator i operators iterator while i has next operator original child i next operator cloned child original child clone operator original child get name cloned child set parent clone clone add operator cloned child return clone
|
performs a deep clone of this operator chain
|
public boolean contains class extends ioobject cls try get input cls 0 false return true catch missing ioobject exception e return false
|
returns true if this iocontainer containts an ioobject of the desired
|
public iocontainer append ioobject object return append new ioobject object
|
creates a new iocontainer by adding all ioobjects of this container to
|
protected boolean should return inner output return false
|
indicates if inner output should be delivered by this operator chain
|
public iocontainer append ioobject output list ioobject new objects new linked list ioobject for int i 0 i output length i new objects add output i new objects add all io objects return new iocontainer new objects
|
creates a new iocontainer by adding all ioobjects of this container to
|
public iocontainer prepend ioobject object return prepend new ioobject object
|
creates a new iocontainer by adding the given object before the ioobjects
|
public iocontainer prepend ioobject output list ioobject new objects new linked list ioobject new objects add all io objects for int i 0 i output length i new objects add output i return new iocontainer new objects
|
creates a new iocontainer by adding the given objects before the
|
public iocontainer append collection ioobject output list ioobject new objects new linked list ioobject new objects add all output new objects add all io objects return new iocontainer new objects
|
appends this containers ioobjects to output
|
protected void register operator process process super register operator process iterator operator i operators iterator while i has next operator child i next child register operator process
|
register this operator chain and all of its children in the given process
|
public void remove all io objects clear
|
removes all objects from this iocontainer
|
protected void unregister operator process process super unregister operator process iterator operator i operators iterator while i has next operator operator i next operator unregister operator process
|
unregisters this chain and all of its children from the given process
|
public operator get operator int i if i 0 i get number of operators throw new runtime exception illegal operator index in get operator get name i int counter 0 iterator operator o operators iterator while o has next operator operator o next if operator is enabled if counter i return operator counter return null
|
returns the i th inner operator
|
public int get number of operators int number 0 iterator operator i operators iterator while i has next operator op i next if op is enabled number return number
|
returns the number of all enabled inner operators
|
public int get number of all operators return operators size
|
returns the number of all inner operators including the disabled
|
public operator get operator from all int i return operators get i
|
returns the i th operator
|
public void add individual individual individuals add individual
|
adds a single individual
|
public int get index of operator operator operator boolean use disabled if use disabled return operators index of operator else int index 0 iterator operator i operators iterator while i has next operator current i next if current is enabled if current equals operator return index index return 1
|
returns the index of the given operator in the list of children
|
public void add all individuals collection individual new individuals individuals add all new individuals
|
adds all individuals from the given collection
|
public void remove individual individual individuals remove individual
|
removes a single individual
|
public void remove int i individuals remove i
|
removes a single individual
|
public operator get inner operator for name string name if name null return null if name equals this get name return this iterator operator i operators iterator while i has next operator inner i next if name equals inner get name return inner if inner instanceof operator chain operator innerinner operator chain inner get inner operator for name name if innerinner null return innerinner return null
|
returns the inner operator named tt name tt or null if no such
|
public individual get int i return individuals get i
|
returns a single individual
|
public int get number of individuals return individuals size
|
returns the number of all individuals
|
public boolean empty return individuals size 0
|
returns true is the population contains no individuals
|
public void next generation generation
|
increase the generation number by one
|
public void process starts throws operator exception super process starts for int i 0 i get number of operators i get operator i process starts
|
invokes the super method and the method for all children
|
public int get generations without improval return generation generation of last improval
|
returns the number of generations without improval
|
public void update evaluation current best search best current best performance current best null null current best get performance if best ever null current best null current best performance compare to best performance ever 0 best ever new individual current best get weights best ever set performance current best get performance best performance ever best ever get performance generation of last improval generation
|
remember the current generations best individual and update the best
|
private individual search best try return collections max individuals performance comparator catch null pointer exception e return null catch no such element exception e return null
|
finds the current generations best individual
|
public void process finished throws operator exception super process finished for int i 0 i get number of operators i get operator i process finished
|
invokes the super method and the method for all children
|
public performance vector get best performance ever return best performance ever
|
returns the best performance
|
private asevaluation get weka attribute evaluator string prefix name string parameters throws operator exception string actual name prefix name substring weka tools weka operator prefix length string evaluator name null for int i 0 i weka attribute evaluators length i if weka attribute evaluators i ends with actual name evaluator name weka attribute evaluators i break asevaluation evaluator null try evaluator asevaluation asevaluation for name evaluator name parameters catch exception e throw new user error this e 904 new object evaluator name e return evaluator
|
returns the weka attribute evaluator based on the subtype of this
|
public individual get best individual ever return best ever
|
returns all generations best individual
|
public individual get current best return current best
|
returns the last generations best individual
|
public void perform additional checks throws user error iterator operator i operators iterator while i has next operator o i next if o is enabled o perform additional checks
|
this method invokes the additional check method for each child
|
public performance vector get current best performance return current best performance
|
returns the last generations best performance
|
public void sort collections sort individuals performance comparator
|
sorts the individuals in ascending order according to their performance
|
public int check properties int error count super check properties iterator operator i operators iterator while i has next operator o i next if o is enabled error count o check properties return error count
|
will throw an exception if a non optional property has no default value
|
public int check deprecations int deprecation count super check deprecations iterator operator i operators iterator while i has next operator o i next deprecation count o check deprecations return deprecation count
|
will count an the number of deprecated operators i
|
public boolean perform operation int generation return true
|
the default implementation returns true for every generation
|
protected string create process tree int indent string self prefix string child prefix operator mark operator string mark string tree super create process tree indent self prefix child prefix mark operator mark iterator operator i operators iterator while i has next operator o i next tree tools get line separator o create process tree indent child prefix child prefix i has next mark operator mark return tree
|
returns this operator chains name and class and the process trees of
|
public process get process operator parent get parent if parent null return null else return parent get process
|
returns the process of this operator by asking the parent operator
|
private double calculate distance example first example second double distance 0 for attribute attribute first get attributes double diff first get value attribute second get value attribute distance diff diff return math sqrt distance
|
calculates the euclidean distance between both examples
|
private boolean solution good enough if generation max generation return true else return false
|
returns true if the maximum number of generations was reached
|
private boolean is valid int individual for int i 0 i individual length i if individual i 0 return true return false
|
checks if at least one feature was selected
|
public void mutate list aggregation individual population list aggregation individual children new array list aggregation individual iterator aggregation individual i population iterator while i has next aggregation individual individual i next int parent individual get individual int child new int parent length for int j 0 j child length j child j parent j mutate child if is valid child children add new aggregation individual child population add all children
|
invokes the method mutate int for each individual
|
private void mutate int individual double prob 1 0d individual length int max 1 for int i 0 i individual length i if individual i max max individual i for int i 0 i individual length i if random next double prob individual i random next int in range 1 max 1
|
changes the individual each gene with probability 1 n
|
private void crossover int individual1 int individual2 switch crossover type case crossover one point int n 1 random next int individual1 length 1 for int i n i individual1 length i int dummy individual1 i individual1 i individual2 i individual2 i dummy break case crossover uniform for int i 0 i individual1 length i if random next boolean int dummy individual1 i individual1 i individual2 i individual2 i dummy break default break
|
changes the individual
|
public void log string message get log log get name message log service status
|
logs a status message with the correct log service
|
public void perform selection list aggregation individual population list list aggregation individual ranks new array list list aggregation individual while population size 0 list aggregation individual rank get next rank population ranks add rank iterator aggregation individual i rank iterator while i has next population remove i next population clear int index 0 while index ranks size population size ranks get index size pop size population add all ranks get index index if population size pop size list aggregation individual rank ranks get index sort by crowding distance rank while population size pop size population add rank remove 0
|
performs non dominated sorting selection from nsga ii
|
public boolean perform operation int generation return generation plot generations 0
|
returns true if the current generation modulo the plot generations
|
protected example set based population operator get mutation population operator example set e set throws undefined parameter error double p mutation get parameter as double parameter p mutation return new example set based selection mutation p mutation get random 1 get parameter as int parameter max total number of attributes 1
|
returns an operator that performs the mutation
|
public void log note string message get log log get name message log service note
|
logs a note message with the correct log service
|
public void log warning string message get log log get name message log service warning
|
logs a warning message with the correct log service
|
public void operate example set based population pop throws exception list example set based individual new individuals new linked list example set based individual for int i 0 i pop get number of individuals i list example set based individual individuals operate pop get i new individuals add all individuals pop clear pop add all individuals new individuals
|
operates on all individuals removes the original individuals and adds
|
protected example set based population operator get crossover population operator example set example set throws undefined parameter error double p crossover get parameter as double parameter p crossover int crossover type get parameter as int parameter crossover type return new unbalanced crossover crossover type p crossover get random
|
returns an code unbalanced crossover code
|
protected void evaluate population population throws operator exception population evaluator evaluate population
|
evaluates all individuals in the population by applying the inner
|
protected example set based population operator get generating population operator example set example set return null
|
since the mutation of yagga also creates new attributes this method
|
protected example set based population operator get mutation population operator example set e set throws operator exception list feature generator generators get generators if generators size 0 log warning no feature generators specified for get name list attribute attributes new linked list attribute for attribute attribute e set get attributes attributes add attribute double p mutation get parameter as double parameter p mutation int max number of attributes get parameter as int parameter max total number of attributes return new generating mutation attributes p mutation max number of attributes generators get random
|
returns the generating mutation code population operator code
|
public example set based population create initial population example set es throws undefined parameter error example set based population population super create initial population es example set based population pop removed deselected new example set based population for int i 0 i population get number of individuals i pop removed deselected add new example set based individual population get i get example set create clean clone return pop removed deselected
|
creates a initial population
|
private boolean is maximum reached if check for maximal fitness performance vector pv population get best performance ever if pv null return false else if pv get main criterion get fitness double positive infinity return true else if pv get main criterion get max fitness pv get main criterion get fitness return true else return pv get main criterion get fitness maximal fitness else return false
|
this method checks if the maximum was reached for the main criterion
|
public void log error string message get log log get name message log service error
|
logs an error message with the correct log service
|
protected boolean get check for maximum return this check for maximal fitness
|
returns if the operator should check if the maximum was reached for the
|
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