docstring stringlengths 3 2.38k | code stringlengths 9 99.4k |
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restrict this filter to only types declared in the specified package | Annotation . <init> Annotation . <unk> Types . <unk> |
create an entity object using its begin and end position in the tokenized text | Annotation . <init> Annotation . addToken Annotation . <unk> |
get the sentences in this document , as a list | Annotation . <init> Annotation . containsKey Builder . <unk> Annotation . get List . size ArrayList . <init> Document . add Document . <unk> IdentityHashMap < Document , Annotation > . remove LinkedList < Document > . remove |
deep copy of the sentence : we create new entity relation event lists here | Annotation . <init> Annotation . get Annotation . set Annotation . get Annotation . set Annotation . get Annotation . set Annotation . get Annotation . set Annotation . get ArrayList . <init> Annotation . set Annotation . get Annotation . set Annotation . get Annotation . set |
input plain sentence text | Annotation . <init> Annotation . get ArrayList . <init> ArrayList . <init> ArrayList . size ArrayList . get ArrayList . add |
tag the sentence | Annotation . <init> Annotation . get StringBuilder . <init> String . equals StringBuilder . append StringBuilder . toString |
tokenize the text | Annotation . <init> Annotation . get StringBuilder . <init> String . equals StringBuilder . append StringBuilder . toString |
run the actual annotation | Annotation . <init> Annotation . get |
give me a sentence , and i will return a list of core map general object from <unk> lib | Annotation . <init> Annotation . set Annotation . get |
todo <unk> java doc | Annotation . <init> Annotation . set Collections . singletonList Annotation . set |
build a new annotation | Annotation . <init> Annotation . setBody Annotation . <unk> |
add a new annotation cloning in part the source annotation | Annotation . <init> Annotation . setName String . length Annotation . setDescription Annotation . getDescription Annotation . setDescription String . length Annotation . <unk> Annotation . <unk> Annotation . <unk> Annotation . <unk> Annotation . <unk> Annotation . <unk> Annotation . <unk> Annotation . <unk> Annotation . <unk> Annotation . <unk> System . currentTimeMillis Annotation . <unk> Annotation . <unk> HashSet . <init> Set . iterator Annotation . <unk> Set . add HashSet . <init> Iterator . hasNext Set . add TreeSet . <init> Iterator . hasNext Iterator . next TreeSet . add Annotation . <unk> TreeSet . <init> Annotation . <unk> Set . iterator Iterator . hasNext TreeSet . add Annotation . <unk> TreeSet < Annotation > . <init> Set . iterator Set < Annotation > . add Annotation . <unk> Annotation . setFileName Annotation . getFileName File . <init> File . mkdir File . getName File . <init> |
build an annotation for the passed selection in the context , used to pass an annotation to be added which does not have an id yet since it hasnt been stored yet | Annotation . <init> Annotation . setSelection Annotation . setState |
set start time of span in milliseconds | Annotation . <init> Annotation . setTimestamp Annotation . setValue Annotation . setHost |
set the stop time of span in milliseconds | Annotation . <init> Annotation . setTimestamp Annotation . setValue Annotation . setHost |
set the annotation value of this property by importing the given annotation from another instance | Annotation . <init> Annotation . setType Annotation . getProperties Annotation . setProperties |
create a new annotation to be dynamically inserted in the byte code | Annotation . <init> Annotation > . getName Entry < String > . getValue Annotation . <unk> |
keep only the first percentage sentences from the given corpus | Annotation . <init> ArrayList . <init> Annotation . get List . get List . add List . size Annotation . set |
keep only the first percentage sentences from the given corpus | Annotation . <init> ArrayList . <init> Annotation . get List . size List . get List . add List . size Annotation . set |
keep only the first percentage sentences from the given corpus | Annotation . <init> ArrayList . <init> List . get List . add List . size |
add new text <unk> creates a new edit text for users to enter the text for a text <unk> | Annotation . <init> ArrayList < Pair < ArrayList < View > , Annotation > > . add Annotation . getView ArrayList < Pair < ArrayList < View > , Annotation > > . add |
add a new annotation | Annotation . <init> Arrays . asList Map < String , List < Annotation > > . put Map < String , List < Annotation > > . get ArrayList < Annotation > . <init> Map < String , List < Annotation > > . get Annotation . getRange Range . getStart List < Annotation > . add String . equals Range . getStart Math . min Annotation . getRange Math . max Annotation . getRange List < Annotation > . add Annotation . getValue List < Annotation > . add Annotation . getValue Annotation . getRange Range . getStart Annotation . getRange List < Annotation > . add Annotation . getName Annotation . getValue Annotation . getRange Range . getEnd Annotation . <init> List < Annotation > . add Map < String , List < Annotation > > . put List < Annotation > . size |
get the parsed text | Annotation . <init> ByteArrayOutputStream . <init> ByteArrayOutputStream . flush ByteArrayOutputStream . close InputStreamReader . <init> BufferedReader . <init> ByteArrayOutputStream . toByteArray BufferedReader . readLine BufferedReader . close |
return the get post put delete annotation | Annotation . <init> Class . getCanonicalName |
create a new annotation to be dynamically inserted in the byte code | Annotation . <init> Class . getName Map < String > . entrySet Entry < String > . getValue Annotation . <unk> |
parse an annotation type definition | Annotation . <init> ClassDoc . name ClassDoc . qualifiedName ClassDoc . <unk> ClassDoc . isIncluded Parser . <unk> ArrayList . <init> ArrayList . add ArrayList . toArray ClassDoc . name Parser . <unk> ClassDoc . qualifiedName Parser . <unk> |
parse an annotation type definition | Annotation . <init> ClassDoc . name ClassDoc . qualifiedName ClassDoc . <unk> ClassDoc . isIncluded Parser . <unk> ArrayList . <init> Parser . <unk> ArrayList . add ArrayList . toArray ClassDoc . name ClassDoc . annotations Parser . <unk> |
create new xml see also annotation | Annotation . <init> ClassFile . <unk> Collection < Class > . size Class . getName ClassFile . <unk> Annotation . <unk> Collection < Class > . size |
add an annotation node for an annotation element newly inserted into the j <unk> html document | Annotation . <init> Collections . binarySearch List < Annotation > . add |
store all the annotation attributes in a new annotation object for addition to an array list | Annotation . <init> Cursor . getLong Annotation . setId Cursor . getString Annotation . <unk> Annotation . setAuthor Cursor . getString Annotation . setImage |
perform the core nlp annotation on the entry string , returning the results as a list of core map objects corresponding to each sentence | Annotation . <init> Date . <init> Date . getTime Date . <init> Date . getTime Annotation . get |
perform the core nlp annotation on the entry string , returning the results as a list of core map objects corresponding to each sentence | Annotation . <init> Date . getTime Annotation . get |
construct an annotation that can be accessed through the interface represented by clazz | Annotation . <init> Descriptor . of Annotation . <init> HashMap . <init> Annotation . <unk> Annotation . <unk> |
bind annotation element | Annotation . <init> Element . getAttributes NamedNodeMap . getLength Attr . cast Attr . getName Annotation . setType Attr . getValue Annotation . setEncoding Attr . getValue Annotation . <unk> Element . getFirstChild Annotation . <unk> |
create chunk that is merged from chunk index start to chunk index end exclusive | Annotation . <init> Entry < Class > . getValue List . subList Entry < Class > . getKey |
get a new annotation whose value map contains a single key value pair | Annotation . <init> HashMap < String , Object > . <init> HashMap < String , Object > . put Annotation . setValue |
get an annotation of type net | Annotation . <init> HashMap < String , Object > . <init> HashMap < String , Object > . put Annotation . setValue |
todo does not do any filtering at the moment ! ! ! | Annotation . <init> LinkedList . <init> Text . <init> List . size String . format LinkedList < Resource > . <init> Map < List > . get Resource . getInstance List < Resource > . add List . add Annotation . <unk> |
todo does not do any filtering at the moment ! ! ! | Annotation . <init> LinkedList . <init> Text . <init> List . size String . format Map < List > . size Map < List > . keySet LinkedList < Resource > . <init> Resource . getInstance List < Resource > . add List . add Annotation . <unk> |
method create a new annotation based on file gathered data and put it to existing <unk> list | Annotation . <init> List . add String . startsWith Annotation . <init> List . add |
create chunk that is merged from chunk index start to chunk index end exclusive | Annotation . <init> List . size Entry < Class > . getKey Entry < Class > . getValue Entry < Class > . getKey |
create chunk that is merged from chunk index start to chunk index end exclusive | Annotation . <init> List . size Entry < Class > . getKey |
create chunk that is merged from chunk index start to chunk index end exclusive | Annotation . <init> List . size List . subList Entry < Class > . getKey |
create chunk that is merged from chunk index start to chunk index end exclusive | Annotation . <init> List . subList Entry < Class > . getKey Entry < Class > . getValue |
add a new annotation to the attribute | Annotation . <init> List < Annotation > . add |
in this simple model , annotations are used for several node property types , eg : <unk> characteristics or protocol parameters | Annotation . <init> List < Annotation > . add |
create chunk that is merged from chunk index start to chunk index end exclusive | Annotation . <init> Map < Class > . entrySet Entry < Class > . getKey Entry < Class > . getValue |
create chunk that is merged from chunk index start to chunk index end exclusive | Annotation . <init> Map < Class > . entrySet Entry < Class > . getKey |
create chunk that is merged from chunk index start to chunk index end exclusive | Annotation . <init> Map < Class > . entrySet List . size Entry < Class > . getValue List . subList Entry < Class > . getKey |
create chunk that is merged from chunk index start to chunk index end exclusive | Annotation . <init> Map < Class > . entrySet List . size List . subList Entry < Class > . getValue Entry < Class > . getKey |
create chunk that is merged from chunk index start to chunk index end exclusive | Annotation . <init> Map < Class > . entrySet List . subList Entry < Class > . getKey |
create chunk that is merged from chunk index start to chunk index end exclusive | Annotation . <init> Map < Class > . entrySet List . subList Entry < Class > . getValue Entry < Class > . getKey |
add a new annotation | Annotation . <init> Map < String , List < Annotation > > . put ArrayList < Annotation > . <init> Annotation . getRange List < Annotation > . add Annotation . getValue Math . min Annotation . getRange Math . min Annotation . getRange Range . getEnd Math . max Annotation . getRange Range . getStart List < Annotation > . add Annotation . getValue List < Annotation > . add Annotation . getRange Range . getStart Annotation . getRange Range . getEnd List < Annotation > . add Annotation . getValue List < Annotation > . add Annotation . getRange Range . getEnd Annotation . <init> List < Annotation > . add Map < String , List < Annotation > > . put List < Annotation > . size |
create a deep copy of this annotation object using the given string objects | Annotation . <init> Map < String , Object > . get Annotation . setItem |
create a new annotation to be dynamically inserted in the byte code | Annotation . <init> Map < String > . entrySet Annotation . <unk> Entry < String > . getValue Annotation . <unk> |
create a new annotation to be dynamically inserted in the byte code | Annotation . <init> Map < String > . entrySet Entry < String > . getValue Entry < String > . getKey Annotation . <unk> |
add a new annotation to the model | Annotation . <init> Position . <init> LinkedList . add Map . put |
get an annotation from a result set , filling in the geometry and application data if available | Annotation . <init> ResultSet . getLong ResultSet . getInt HashMap < Long , HashMap < String , String > > . get HashMap < Long > . get |
construct a standard signature annotation | Annotation . <init> String . length ArrayList < String > . <init> String . charAt ArrayList < String > . add ArrayList < String > . size List . <init> ArrayList < String > . get List . set NameValuePair . <init> Annotation . put |
construct a standard signature annotation | Annotation . <init> String . length ArrayList < String > . <init> String . charAt ArrayList < String > . add ArrayList < String > . size List . <init> List . set ArrayList < String > . get Annotation . put |
construct a standard signature annotation | Annotation . <init> String . length ArrayList < String > . <init> String . charAt ArrayList < String > . add ArrayList < String > . size List . <init> List . set ArrayList < String > . get List . set Annotation . put |
construct a standard signature annotation | Annotation . <init> String . length ArrayList < String > . <init> String . charAt ArrayList < String > . add ArrayList < String > . size List . <init> List . set ArrayList < String > . get List . set List . <unk> Annotation . put Annotation . <unk> |
construct a standard signature annotation | Annotation . <init> String . length ArrayList < String > . <init> String . charAt ArrayList < String > . add ArrayList < String > . size List . <init> List . set ArrayList < String > . get List . set NameValuePair . <init> Annotation . put Annotation . <unk> |
construct a standard signature annotation | Annotation . <init> String . length ArrayList < String > . <init> String . charAt ArrayList < String > . add ArrayList < String > . size List . <init> List . set ArrayList < String > . get List . set NameValuePair . <init> Annotation . put |
construct a standard signature annotation | Annotation . <init> String . length ArrayList < String > . <init> String . charAt ArrayList < String > . add ArrayList < String > . size List . <init> List . set List . <unk> Annotation . put Annotation . <unk> |
construct a standard signature annotation | Annotation . <init> String . length ArrayList < String > . <init> String . charAt String . substring ArrayList < String > . add ArrayList < String > . size List . <init> ArrayList < String > . get List . set Annotation . put |
construct a standard signature annotation | Annotation . <init> String . length ArrayList < String > . <init> String . charAt String . substring ArrayList < String > . add ArrayList < String > . size List . <init> ArrayList < String > . get List . set NameValuePair . <init> Annotation . put Annotation . <unk> |
construct a standard signature annotation | Annotation . <init> String . length ArrayList < String > . <init> String . charAt String . substring ArrayList < String > . add ArrayList < String > . size List . <init> List . set Annotation . put Annotation . <unk> |
construct a standard signature annotation | Annotation . <init> String . length ArrayList < String > . <init> String . charAt String . substring ArrayList < String > . add ArrayList < String > . size List . <init> List . set ArrayList < String > . get List . set Annotation . put Annotation . <unk> |
construct a standard signature annotation | Annotation . <init> String . length ArrayList < String > . <init> String . charAt String . substring ArrayList < String > . add ArrayList < String > . size List . <init> List . set ArrayList < String > . get List . set Annotation . put |
construct a standard signature annotation | Annotation . <init> String . length ArrayList < String > . <init> String . charAt String . substring ArrayList < String > . add ArrayList < String > . size List . <init> List . set ArrayList < String > . get List . set NameValuePair . <init> Annotation . put Annotation . <unk> |
construct a standard signature annotation | Annotation . <init> String . length ArrayList < String > . <init> String . charAt String . substring ArrayList < String > . add ArrayList < String > . size List . <init> List . set List . <unk> NameValuePair . <init> Annotation . put Annotation . <unk> |
restore the annotation state in this instance to the annotation specified as a param | Annotation . <unk> <unk> . <init> Annotation . <unk> Annotation . <unk> |
get the action to be performed when the annotation is activated | Annotation . <unk> Action . wrap |
remap annotation to reduced ontology e | Annotation . <unk> Annotation . <init> Annotation . <unk> Annotation . getMap HashSet < String > . <init> Map . get HashSet < String > . cast HashSet < String > . addAll HashSet . <init> Iterator . next Set < String > . isEmpty Annotation . <unk> Annotation . add |
remap annotation to reduced ontology e | Annotation . <unk> Annotation . <init> Annotation . getType Annotation . <unk> Annotation . getMap HashMap . keySet HashSet < String > . <init> Map . get HashSet < String > . addAll Iterator . hasNext HashSet . <init> Iterator . next Annotation . <unk> Annotation . add |
restrict this filter to only types declared in the specified package | Annotation . <unk> Annotation . <init> Types . <unk> |
specify the class loader that should be used to look up load the class this type represents | Annotation . <unk> Annotation . <init> |
explicitly including genes in custom annotation in all <unk> categories of custom ontology | Annotation . <unk> Annotation . <unk> Annotation . <unk> Annotation . <init> Annotation . getMap HashMap . keySet HashSet < String > . <init> Map . get HashSet < String > . addAll Iterator . hasNext HashSet . <init> Iterator . next Annotation . <unk> Annotation . add |
return false <unk> phrases annotated manually but not identified by the classifier | Annotation . <unk> Annotation . <unk> Annotation . <unk> Annotation . <unk> Annotation . <unk> Annotation . <unk> Annotation . <unk> String . equalsIgnoreCase |
note if date modified is set , it will be transferred | Annotation . <unk> Annotation . <unk> Annotation . <unk> Annotation . setText Annotation . setTitle Annotation . setType |
add an annotation to the writer with the p curr item given in argument | Annotation . <unk> Annotation . <unk> Annotation . <unk> Date . <init> Annotation . <unk> |
add an annotation to the writer with the p curr item given in argument | Annotation . <unk> Annotation . <unk> Annotation . <unk> Date . <init> Utilities . <unk> Annotation . <unk> |
return an annotation for a <unk> mutation for a gene | Annotation . <unk> Annotation . <unk> Annotation . <unk> String . equals String . length String . format Annotation . <unk> String . length String . format Annotation . <unk> String . format Annotation . <unk> String . format Annotation . <unk> Annotation . <unk> |
get the config property name for an annotation | Annotation . <unk> Annotation . <unk> Annotation . <unk> String . substring String . startsWith String . substring String . startsWith String . substring String . length String . substring String . charAt Character . toLowerCase String . charAt Character . toString |
add an annotation to the writer with the p curr item given in argument | Annotation . <unk> Annotation . <unk> Annotation . <unk> Utilities . <unk> Annotation . <unk> |
check if field corresponding to field id is set has been assigned a value and false otherwise | Annotation . <unk> Annotation . <unk> Annotation . <unk> |
print out all annotations we have for debugging purposes before <unk> | Annotation . <unk> Annotation . <unk> Annotation . <unk> |
this method checks to see if two annotations have the same complex features but does not compare the values of the features | Annotation . <unk> Annotation . <unk> Annotation . <unk> |
this method compares two annotations with respect to their spans , annotation classes and simple features | Annotation . <unk> Annotation . <unk> Annotation . <unk> |
delete all values of a property describing this resource from an annotation | Annotation . <unk> Annotation . <unk> Annotation . delete Annotation . update |
update the annotation body | Annotation . <unk> Annotation . <unk> Annotation . getBody |
mask part of sequence | Annotation . <unk> Annotation . <unk> Annotation . getStart Annotation . getEnd Sequence . <unk> String . substring String . toLowerCase StringBuilder . replace |
this is an <unk> , so this node just shows its own contents | Annotation . <unk> Annotation . <unk> Annotation . println |
get the appearance form object associated with the annotations <unk> | Annotation . <unk> Annotation . <unk> Form . cast Dictionary . getEntries Form . <init> Dictionary . <unk> Dictionary . <unk> Stream . <unk> Dictionary . init HashMap < Name , Object > . <init> HashMap < Name , Object > . put Form . <init> Dictionary . <unk> |
add element to list element value pair list | Annotation . <unk> Annotation . <unk> List . addChild |
prepare a sparql query to be executed on the internal sparql end point | Annotation . <unk> Annotation . <unk> Pattern . compile Pattern . matcher Matcher . start Matcher . replaceAll StringBuilder . <init> StringBuilder . insert StringBuilder . toString StringBuilder . <init> StringBuilder . insert StringBuilder . toString |
update the list of statements by setting the property and value to given values | Annotation . <unk> Annotation . <unk> Statement . <init> Set < Statement > . add Annotation . update |
get the config property name for an annotation | Annotation . <unk> Annotation . <unk> String . substring String . startsWith String . substring String . length Character . toLowerCase String . substring Character . toLowerCase String . charAt Character . toLowerCase Character . toString |
get the config property name for an annotation | Annotation . <unk> Annotation . <unk> String . substring String . startsWith String . substring String . length String . substring String . charAt Character . toLowerCase String . charAt Character . toString |
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