tue-aaa: sync data card, pipeline grid and figures with GitHub

#38
tue-aaa/README.md CHANGED
@@ -1,5 +1,6 @@
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  ---
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- pretty_name: "OpenH-RF — TU/e PULS/e — Abdominal Aortic Aneurysm (C5-2v) channel data"
 
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  license: cc-by-4.0
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  task_categories:
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  - image-to-image
@@ -15,7 +16,11 @@ language:
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  - en
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  ---
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- # Abdominal Aortic Aneurysm (AAA) curved-array channel data
 
 
 
 
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  ## Dataset Description
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@@ -23,10 +28,8 @@ This dataset contains ultrasound channel data acquired in vivo from patients wit
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  ## Dataset Contributor(s)
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- PULS/e group
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- Department of Biomedical Engineering
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- Eindhoven University of Technology
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- contact: Hans-Martin Schwab (h.schwab@tue.nl)
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  ## Dataset Creation Date
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@@ -34,12 +37,12 @@ July 2026
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  ## License / Terms of Use
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- CC BY 4.0.
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  ## Intended Usage
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- Advanced beamforming
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- Motion estimation
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  ## Dataset Characterization
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  - **Acquisition system:** Verasonics Vantage, C5-2v curved array, 128 elements, center frequency 3.6 MHz
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  - **Transmit sequence:** 15 steered diverging waves (polar angles −12° … +12°)
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  ## Dataset Format
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  zea file format. Subject metadata is stored under `metadata/subject` (`age`, `sex`, `bmi`); attribution under `metadata/credit`.
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  ## Dataset Quantification
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  **Current OpenH-RF release:** 15 HDF5 files; 53.08 GB (53,077,606,400 bytes) stored; root `zea_version` **0.1.4**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
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- - **Samples / frames:** 500 acquisitions
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  - **Stored HDF5 size:** 53.08 GB (53,077,606,400 bytes).
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  | Field | Shape | dtype | Units | Description |
@@ -64,7 +83,7 @@ zea file format. Subject metadata is stored under `metadata/subject` (`age`, `se
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  ## Subject Metadata
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- Patients are dominantly male, aged 63–90, and scanned in the Netherlands.
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  ## Data Validation
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  ---
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+ name: tue-aaa
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+ pretty_name: "TU/e PULS/e — Abdominal Aortic Aneurysm (C5-2v) channel data"
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  license: cc-by-4.0
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  task_categories:
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  - image-to-image
 
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  - en
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  ---
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+ # TU/e Abdominal Aortic Aneurysm (AAA) Curved-Array Channel Data
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+
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+ ![Reconstructed cineloop from AAA_subject11.hdf5](assets/AAA_subject11.gif)
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+
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+ *Cine loop of [`data/AAA_subject11.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/tue-aaa/data/AAA_subject11.hdf5), reconstructed from the raw channel data.*
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  ## Dataset Description
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  ## Dataset Contributor(s)
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+ - Hans-Martin Schwab <h.schwab@tue.nl> (contact)
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+ - PULS/e group, Department of Biomedical Engineering, Eindhoven University of Technology
 
 
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  ## Dataset Creation Date
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  ## License / Terms of Use
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+ [Creative Commons Attribution 4.0 International (CC BY 4.0)](https://creativecommons.org/licenses/by/4.0/legalcode.en). Retain attribution and identify modifications when reusing the data.
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  ## Intended Usage
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+ - Advanced beamforming
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+ - Motion estimation
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  ## Dataset Characterization
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  - **Acquisition system:** Verasonics Vantage, C5-2v curved array, 128 elements, center frequency 3.6 MHz
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  - **Transmit sequence:** 15 steered diverging waves (polar angles −12° … +12°)
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+ ## Processing the Dataset
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+
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+ The acquisitions can be processed with the `pipeline.yaml` definition in this folder and the [zea library](https://github.com/tue-bmd/zea).
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+
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+ `zea` streams the data from the Hugging Face Hub and processes it according to the pipeline. You can try it out with the following command:
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+
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+ ```bash
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+ zea process \
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+ --dataset hf://nvidia/OpenH-RF/tue-aaa/data/AAA_subject11.hdf5 \
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+ --config hf://nvidia/OpenH-RF/tue-aaa/pipeline.yaml
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+ ```
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+
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+ Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/tue-aaa/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF).
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+
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  ## Dataset Format
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+ [zea v0.1.4](https://github.com/tue-bmd/zea)
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+
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  zea file format. Subject metadata is stored under `metadata/subject` (`age`, `sex`, `bmi`); attribution under `metadata/credit`.
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  ## Dataset Quantification
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  **Current OpenH-RF release:** 15 HDF5 files; 53.08 GB (53,077,606,400 bytes) stored; root `zea_version` **0.1.4**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
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+ - **Samples / frames:** 15 acquisitions (one HDF5 file each), 500 frames per acquisition — 7,500 frames total
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  - **Stored HDF5 size:** 53.08 GB (53,077,606,400 bytes).
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  | Field | Shape | dtype | Units | Description |
 
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  ## Subject Metadata
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+ Patients are dominantly male (13 M / 2 F), aged 66–87, and scanned in the Netherlands.
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  ## Data Validation
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tue-aaa/assets/AAA_subject11.gif ADDED

Git LFS Details

  • SHA256: 8fa15b7288c6e6ac8f10ec8e327a67a0939f85846ae83cbead91582ab32077d7
  • Pointer size: 133 Bytes
  • Size of remote file: 42.3 MB
tue-aaa/assets/main.png ADDED

Git LFS Details

  • SHA256: 85a83321dbcb37641e88a6dafc9432fc917be70c8466667828797f6000c81a66
  • Pointer size: 131 Bytes
  • Size of remote file: 276 kB
tue-aaa/pipeline.yaml CHANGED
@@ -17,8 +17,8 @@ pipeline:
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  - 1.0
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  - log_compress
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  parameters:
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- grid_size_x: 580
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- grid_size_z: 600
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  xlims:
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  - -0.1
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  - 0.1
 
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  - 1.0
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  - log_compress
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  parameters:
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+ grid_size_x: 960
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+ grid_size_z: 832
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  xlims:
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  - -0.1
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  - 0.1