technion: sync data cards and figures with GitHub

#24
technion/bladder/README.md CHANGED
@@ -1,5 +1,6 @@
1
  ---
2
- pretty_name: "OpenH-RF — Technion Bladder Pre-Beamformed Channel Data"
 
3
  license: cc-by-4.0
4
  task_categories:
5
  - image-to-image
@@ -16,23 +17,23 @@ size_categories:
16
  - 1K<n<10K
17
  ---
18
 
19
- # OpenH-RF — Bladder pre-beamformed RF channel data
 
 
 
 
20
 
21
  ## Dataset Description
22
 
23
- Real, **in-vivo human** pre-beamformed ultrasound **channel data** for bladder
24
- imaging: per-element I/Q recorded before receive beamforming on a 64-element
25
- phased array — a sector scan of 180 transmit beams steered over ±45.13° (≈90°),
26
- one image line per transmit (steering angles in `scan.polar_angles`). 1,508
27
- frames across 14 sweeps from seven subjects. Acquired on a GE research system in
28
- tissue-harmonic mode; the harmonic echo is demodulated to I/Q at 3.44 MHz and
29
- band-pass filtered. No paired image is supplied — the B-mode is reproduced from
30
- the channel data by the released beamformer.
31
 
32
  ## Dataset Contributor(s)
33
 
34
- Sanketh Vedula, Ortal Senouf, Dean Zadok, Alex M. Bronstein (PI) —
35
- Technion – Israel Institute of Technology. Primary contact: sanketh@campus.technion.ac.il.
 
 
 
36
 
37
  ## Dataset Creation Date
38
 
@@ -40,40 +41,38 @@ Source data 2018; converted to the OpenH-RF (zea) format 07/16/2026.
40
 
41
  ## License / Terms of Use
42
 
43
- CC BY 4.0. The contributors confirm intent to release under CC BY 4.0 with no
44
- third-party IP encumbrances (proposal §8).
45
 
46
  ## Intended Usage
47
 
48
- Primary: **generalized reconstruction** (§6.1) — learned receive beamforming and
49
- image reconstruction from raw channel data. The quasi-static bladder is also
50
- suited to multi-line-transmission (MLT) emulation and high-frame-rate research,
51
- and to anatomy/cohort interpretation (§6.5).
52
 
53
  ## Dataset Characterization
54
 
55
- - **Data Collection Method:** in-vivo human (research platform) — GE Vivid S70
56
- scanner with raw per-element channel access, tissue-harmonic mode.
57
- - **Labeling Method:** N/A — no per-frame image label; the `zea.Pipeline` in
58
- `pipeline.yaml` reconstructs a B-mode from the channel data for validation.
59
- - **Acquisition system:** GE Vivid S70 scanner; GE 3Sc-RS 64-element phased-array
60
- probe, 0.30 mm pitch; sector scan, 180 transmit beams steered over ±45.13°
61
- (≈90.25° FOV), one image line per transmit.
62
- Per proposal: 2.56-cycle 1.6 MHz transmit, no transmit apodization,
63
- tissue-harmonic mode, harmonic echo demodulated to I/Q at 3.44 MHz and filtered,
64
- ~18 fps; transversal plane with slow longitudinal probe sweep to decorrelate
65
- frames.
 
 
 
 
 
 
 
66
 
67
  ## Dataset Format
68
 
69
- zea file format, one HDF5 file per sweep (`data/<subject>.hdf5`, e.g. `a1.hdf5`,
70
- `ak.hdf5`, `s2.hdf5`). The source complex `double` samples were repackaged to
71
- `float32` I/Q with I and Q on the final channel axis (`n_ch = 2`); values are
72
- otherwise verbatim (band-pass filtered baseband IQ, as archived). Each file
73
- carries `metadata/subject/{id,type=human}`, `metadata/credit`, and
74
- `metadata/annotations/{anatomy=bladder, label=in vivo, view=transverse suprapubic
75
- pelvic ultrasound}`. Probe model (`probe.name = GE 3Sc-RS`) and scanner
76
- (`us_machine = GE Vivid S70`) are stored too.
77
 
78
  ## Dataset Quantification
79
 
@@ -94,12 +93,7 @@ pelvic ultrasound}`. Probe model (`probe.name = GE 3Sc-RS`) and scanner
94
 
95
  ## Subject Metadata
96
 
97
- **Seven in-vivo human volunteers**, 14 sweeps, 1,508 frames. (The proposal's
98
- "six" was an undercount; verified from the acquisitions to be seven distinct
99
- volunteers.) No phantom is included in this collection — the calibration phantom
100
- is a separate submission (`../phantom/`). No PHI stored: only anonymized
101
- `subject.id`, `subject.type = human`, and `annotations.anatomy = bladder`.
102
- Age and sex were not recorded for these acquisitions.
103
 
104
  | Subject | Sweeps (files) | Frames |
105
  |---|---|---|
@@ -113,37 +107,19 @@ Age and sex were not recorded for these acquisitions.
113
 
114
  ## Data Validation
115
 
116
- `reconstruct.py` reconstructs a B-mode from `raw_data` using the `zea.Pipeline`
117
- defined in `pipeline.yaml`: delay-and-sum beamforming on a polar scanline grid
118
- (one image line per transmit, receive dynamic focusing at f-number 1) → envelope
119
- detection → normalization → log compression → sector scan conversion. Run it on
120
- any file to reproduce a reference frame:
121
-
122
- ```
123
- python reconstruct.py data/s2.hdf5 --frame 54 --out bmode_s2.png
124
- ```
125
 
126
- Reference output: `bmode_s2.png`. The pipeline matches the acquisition's own
127
- receive-beamforming geometry (`code/processing/`), so the reconstruction
128
- reproduces the expected sector B-mode.
129
 
130
  ## Known Issues
131
 
132
- - **No paired image target** (unlike the cardiac set); the B-mode is derived from
133
- the channel data, not supplied.
134
- - **Transmit fundamental (1.6 MHz) not stored** — only the 3.44 MHz demodulation
135
- frequency is in the files, so `center_frequency` equals the demodulation
136
- frequency.
137
 
138
  ## Ethical Considerations
139
 
140
- **Privacy safeguards (HIPAA and GDPR).** Pre-beamformed RF channel data contains
141
- no facial or otherwise identifying imagery. All records are de-identified to the
142
- HIPAA Safe Harbor standard, with direct identifiers removed and any dates
143
- generalized to bands. As an EU institution we additionally comply with GDPR,
144
- holding any pseudonymized subject identifiers separately on access-controlled
145
- storage and never sharing them. The released data are de-identified and contain
146
- only the channel signals and acquisition metadata.
147
 
148
- **Ethics.** The data were collected under ethical best practices on healthy
149
- volunteers.
 
1
  ---
2
+ name: technion-bladder
3
+ pretty_name: "Technion Bladder Pre-Beamformed Channel Data"
4
  license: cc-by-4.0
5
  task_categories:
6
  - image-to-image
 
17
  - 1K<n<10K
18
  ---
19
 
20
+ # Technion In-vivo Bladder Pre-beamformed RF Channel Data
21
+
22
+ ![Transverse suprapubic view of the bladder, one 10-frame cine loop](assets/cine.gif)
23
+
24
+ *Transverse suprapubic view: one cine loop (10 frames) from [`data/a1.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/technion/bladder/data/a1.hdf5).*
25
 
26
  ## Dataset Description
27
 
28
+ Real, **in-vivo human** pre-beamformed ultrasound **channel data** for bladder imaging: per-element I/Q recorded before receive beamforming on a 64-element phased array — a sector scan of 180 transmit beams steered over ±45.13° (≈90°), one image line per transmit (steering angles in `scan.polar_angles`). 1,508 frames across 14 sweeps from seven subjects. Acquired on a GE research system in tissue-harmonic mode; the harmonic echo is demodulated to I/Q at 3.44 MHz and band-pass filtered. No paired image is supplied — the B-mode is reproduced from the channel data by the released beamformer.
 
 
 
 
 
 
 
29
 
30
  ## Dataset Contributor(s)
31
 
32
+ - Sanketh Vedula <sanketh@campus.technion.ac.il> (primary contact)
33
+ - Ortal Senouf
34
+ - Dean Zadok
35
+ - Alex M. Bronstein (PI)
36
+ - Technion – Israel Institute of Technology
37
 
38
  ## Dataset Creation Date
39
 
 
41
 
42
  ## License / Terms of Use
43
 
44
+ [Creative Commons Attribution 4.0 International (CC BY 4.0)](https://creativecommons.org/licenses/by/4.0/legalcode.en). Retain attribution and identify modifications when reusing the data.
 
45
 
46
  ## Intended Usage
47
 
48
+ Primary: **generalized reconstruction** (§6.1) — learned receive beamforming and image reconstruction from raw channel data. The quasi-static bladder is also suited to multi-line-transmission (MLT) emulation and high-frame-rate research, and to anatomy/cohort interpretation (§6.5).
 
 
 
49
 
50
  ## Dataset Characterization
51
 
52
+ - **Data Collection Method:** in-vivo human (research platform) — GE Vivid S70 scanner with raw per-element channel access, tissue-harmonic mode.
53
+ - **Labeling Method:** N/A — no per-frame image label; the `zea.Pipeline` in `pipeline.yaml` reconstructs a B-mode from the channel data for validation.
54
+ - **Acquisition system:** GE Vivid S70 scanner; GE 3Sc-RS 64-element phased-array probe, 0.30 mm pitch; sector scan, 180 transmit beams steered over ±45.13° (≈90.25° FOV), one image line per transmit. Per proposal: 2.56-cycle 1.6 MHz transmit, no transmit apodization, tissue-harmonic mode, harmonic echo demodulated to I/Q at 3.44 MHz and filtered, ~18 fps; transversal plane with slow longitudinal probe sweep to decorrelate frames.
55
+
56
+ ## Processing the Dataset
57
+
58
+ The acquisitions can be processed with the `pipeline.yaml` definition in this folder and the [zea library](https://github.com/tue-bmd/zea).
59
+
60
+ `zea` streams the data from the Hugging Face Hub and processes it according to the pipeline. You can try it out with the following command:
61
+
62
+ ```bash
63
+ zea process \
64
+ --dataset hf://nvidia/OpenH-RF/technion/bladder/data/a1.hdf5 \
65
+ --config hf://nvidia/OpenH-RF/technion/bladder/pipeline.yaml \
66
+ --n-frames 10
67
+ ```
68
+
69
+ Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/technion/bladder/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF).
70
 
71
  ## Dataset Format
72
 
73
+ [zea v0.1.4](https://github.com/tue-bmd/zea)
74
+
75
+ zea file format, one HDF5 file per sweep (`data/<subject>.hdf5`, e.g. `a1.hdf5`, `ak.hdf5`, `s2.hdf5`). The source complex `double` samples were repackaged to `float32` I/Q with I and Q on the final channel axis (`n_ch = 2`); values are otherwise verbatim (band-pass filtered baseband IQ, as archived). Each file carries `metadata/subject/{id,type=human}`, `metadata/credit`, and `metadata/annotations/{anatomy=bladder, label=in vivo, view=transverse suprapubic pelvic ultrasound}`. Probe model (`probe.name = GE 3Sc-RS`) and scanner (`us_machine = GE Vivid S70`) are stored too.
 
 
 
 
 
76
 
77
  ## Dataset Quantification
78
 
 
93
 
94
  ## Subject Metadata
95
 
96
+ **Seven in-vivo human volunteers**, 14 sweeps, 1,508 frames. (The proposal's "six" was an undercount; verified from the acquisitions to be seven distinct volunteers.) No phantom is included in this collection — the calibration phantom is a separate submission (`../phantom/`). No PHI stored: only anonymized `subject.id`, `subject.type = human`, and `annotations.anatomy = bladder`. Age and sex were not recorded for these acquisitions.
 
 
 
 
 
97
 
98
  | Subject | Sweeps (files) | Frames |
99
  |---|---|---|
 
107
 
108
  ## Data Validation
109
 
110
+ `reconstruct.py` reconstructs a B-mode from `raw_data` using the `zea.Pipeline` defined in `pipeline.yaml`: delay-and-sum beamforming on a polar scanline grid (one image line per transmit, receive dynamic focusing) → envelope detection → normalization → log compression → sector scan conversion.
 
 
 
 
 
 
 
 
111
 
112
+ Reference output: `bmode.png` — frame 30 of `data/a1.hdf5` (in `assets/`). The pipeline matches the acquisition's own receive-beamforming geometry (`code/processing/`), so the reconstruction reproduces the expected sector B-mode.
 
 
113
 
114
  ## Known Issues
115
 
116
+ - **No paired image target** (unlike the cardiac set); the B-mode is derived from the channel data, not supplied.
117
+ - **Transmit fundamental (1.6 MHz) not stored** — only the 3.44 MHz demodulation frequency is in the files, so `center_frequency` equals the demodulation frequency.
 
 
 
118
 
119
  ## Ethical Considerations
120
 
121
+ **Privacy safeguards (HIPAA and GDPR).** Pre-beamformed RF channel data contains no facial or otherwise identifying imagery. All records are de-identified to the HIPAA Safe Harbor standard, with direct identifiers removed and any dates generalized to bands. As an EU institution we additionally comply with GDPR, holding any pseudonymized subject identifiers separately on access-controlled storage and never sharing them. The released data are de-identified and contain only the channel signals and acquisition metadata.
122
+
123
+ **Ethics.** The data were collected under ethical best practices on healthy volunteers.
 
 
 
 
124
 
125
+ The contributors confirm intent to release under CC BY 4.0 with no third-party IP encumbrances (proposal §8).
 
technion/bladder/assets/bmode.png ADDED

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technion/bladder/assets/cine.gif ADDED

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technion/cardiac/README.md CHANGED
@@ -1,5 +1,6 @@
1
  ---
2
- pretty_name: "OpenH-RF — Technion Cardiac Pre-Beamformed Channel Data"
 
3
  license: cc-by-4.0
4
  task_categories:
5
  - image-to-image
@@ -16,22 +17,23 @@ size_categories:
16
  - n<1K
17
  ---
18
 
19
- # OpenH-RF — Cardiac pre-beamformed RF channel data (paired with DAS targets)
 
 
 
 
20
 
21
  ## Dataset Description
22
 
23
- Real, **in-vivo human** pre-beamformed ultrasound **channel data** for cardiac
24
- imaging: per-element I/Q recorded before receive beamforming on a 64-element
25
- phased array — a sector scan of 140 transmit beams steered over ±37.5°, one image
26
- line per transmit (steering angles in `scan.polar_angles`). Each frame is **paired with
27
- its conventional delay-and-sum reconstruction** (stored as `beamformed_data`),
28
- making this a ready-made input→target set for learned reconstruction /
29
- beamforming. 777 frames across 25 cine loops from six subjects (a–f).
30
 
31
  ## Dataset Contributor(s)
32
 
33
- Sanketh Vedula, Ortal Senouf, Dean Zadok, Alex M. Bronstein (PI) —
34
- Technion – Israel Institute of Technology. Primary contact: sanketh@campus.technion.ac.il.
 
 
 
35
 
36
  ## Dataset Creation Date
37
 
@@ -39,45 +41,45 @@ Acquired 2018; converted to the OpenH-RF (zea) format 07/16/2026.
39
 
40
  ## License / Terms of Use
41
 
42
- CC BY 4.0. The data is the contributors' own research acquisition, cleared for
43
- CC BY 4.0 with no third-party IP encumbrances.
44
 
45
  ## Intended Usage
46
 
47
- Primary: **generalized reconstruction** (§6.1) — learning to map raw per-element
48
- channel data to a focused image (learned receive/transmit beamforming,
49
- super-resolution, clutter suppression), trained and evaluated against the paired
50
- delay-and-sum target. Secondary: motion estimation across the cardiac cine loops
51
- (§6.4) and anatomy/cohort interpretation (§6.5).
52
 
53
  ## Dataset Characterization
54
 
55
- - **Data Collection Method:** in-vivo human (research platform) — GE Vivid S70
56
- scanner with raw per-element channel access.
57
- - **Labeling Method:** derived ground truth — the paired `beamformed_data` is the
58
- conventional delay-and-sum reconstruction of each frame.
59
- - **Acquisition system:** GE Vivid S70 scanner; GE 3Sc-RS 64-element phased-array
60
- probe, 0.30 mm pitch; sector scan, 140 acquisition lines over a ~75° sector
61
- (±37.5°); 2.5 MHz transmit; apical four-chamber view (A4C).
 
 
 
 
 
 
 
 
 
 
 
62
 
63
  ## Dataset Format
64
 
65
- zea file format, one HDF5 file per cine loop (`data/<subject><clip>.hdf5`, e.g.
66
- `a1.hdf5` = subject a, clip 1; `f2.hdf5` = patient-set subject f). The source
67
- complex `int16` samples were repackaged to `float32` I/Q with I and Q on the
68
- final channel axis (`n_ch = 2`); values are otherwise verbatim. Each file carries
69
- `metadata/subject/{id,type=human}`, `metadata/credit`, and
70
- `metadata/annotations/{anatomy=cardiac, label=in vivo, view=apical four-chamber (A4C)}`. Probe
71
- model (`probe.name = GE 3Sc-RS`) and scanner (`us_machine = GE Vivid S70`) are
72
- stored too.
73
 
74
  ## Dataset Quantification
75
 
76
  **Current OpenH-RF release:** 25 HDF5 files; 14.99 GB (14,992,998,400 bytes) stored; root `zea_version` **0.1.4**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
77
 
78
  - **Frames / cines / subjects:** 777 frames · 25 cine loops · 6 subjects (a–f).
79
- - **Train / val / test split:** N/A (contributor to define; the `f2` patient set
80
- is a natural held-out cine).
81
  - **Stored HDF5 size:** 14.99 GB (14,992,998,400 bytes).
82
 
83
  | Field | Shape | dtype | Units | Description |
@@ -93,46 +95,23 @@ stored too.
93
 
94
  ## Subject Metadata
95
 
96
- Six subjects (a–e main set, f patient set), 777 frames across 25 cine loops.
97
- In-vivo human; no PHI stored (only `subject.id` a1…f2, `subject.type = human`,
98
- `anatomy = cardiac`, `view = apical four-chamber (A4C)`). Age and sex were not recorded for these
99
- acquisitions.
100
 
101
  ## Data Validation
102
 
103
- `reconstruct.py` reconstructs a B-mode from `raw_data` using the `zea.Pipeline`
104
- defined in `pipeline.yaml`: delay-and-sum on a polar scanline grid (one image line
105
- per acquisition line, receive dynamic focusing) → envelope detection →
106
- normalization → log compression → sector scan conversion. Run:
107
-
108
- ```
109
- python reconstruct.py data/a1.hdf5 --frame 15 --out bmode_a1.png
110
- ```
111
 
112
- Reference output: `bmode_a1.png`. Each frame is also paired with its conventional
113
- delay-and-sum reconstruction in `beamformed_data` (the target for the raw→image
114
- learning task) — note its depth scale is approximate because the acquisition axial
115
- rate is not stored (see Known Issues).
116
 
117
  ## Known Issues
118
 
119
- - **Axial sample rate not stored.** The consolidated source `.mat` files do not
120
- carry the acquisition header, so `sampling_frequency` (6.0 MHz) is a best
121
- estimate and the reconstructed depth scale is approximate. This applies both to
122
- the raw→image reconstruction and to the paired `beamformed_data` target (exact
123
- in value, approximate in depth axis).
124
- - **Sector-angle convention.** Lines are stored as ±37.5° centred about
125
- boresight, the physically correct convention for a phased array.
126
 
127
  ## Ethical Considerations
128
 
129
- **Privacy safeguards (HIPAA and GDPR).** Pre-beamformed RF channel data contains
130
- no facial or otherwise identifying imagery. All records are de-identified to the
131
- HIPAA Safe Harbor standard, with direct identifiers removed and any dates
132
- generalized to bands. As an EU institution we additionally comply with GDPR,
133
- holding any pseudonymized subject identifiers separately on access-controlled
134
- storage and never sharing them. The released data are de-identified and contain
135
- only the channel signals and acquisition metadata.
136
 
137
- **Ethics.** The data were collected under ethical best practices on healthy
138
- volunteers.
 
1
  ---
2
+ name: technion-cardiac
3
+ pretty_name: "Technion Cardiac Pre-Beamformed Channel Data"
4
  license: cc-by-4.0
5
  task_categories:
6
  - image-to-image
 
17
  - n<1K
18
  ---
19
 
20
+ # Technion Cardiac Pre-beamformed RF Channel Data (paired with DAS targets)
21
+
22
+ ![Apical four-chamber view, one 32-frame cardiac cine loop](assets/cine.gif)
23
+
24
+ *Apical four-chamber view: one cine loop (32 frames) from [`data/c1.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/technion/cardiac/data/c1.hdf5).*
25
 
26
  ## Dataset Description
27
 
28
+ Real, **in-vivo human** pre-beamformed ultrasound **channel data** for cardiac imaging: per-element I/Q recorded before receive beamforming on a 64-element phased array — a sector scan of 140 transmit beams steered over ±37.5°, one image line per transmit (steering angles in `scan.polar_angles`). Each frame is **paired with its conventional delay-and-sum reconstruction** (stored as `beamformed_data`), making this a ready-made input→target set for learned reconstruction / beamforming. 777 frames across 25 cine loops from six subjects (a–f).
 
 
 
 
 
 
29
 
30
  ## Dataset Contributor(s)
31
 
32
+ - Sanketh Vedula <sanketh@campus.technion.ac.il> (primary contact)
33
+ - Ortal Senouf
34
+ - Dean Zadok
35
+ - Alex M. Bronstein (PI)
36
+ - Technion – Israel Institute of Technology
37
 
38
  ## Dataset Creation Date
39
 
 
41
 
42
  ## License / Terms of Use
43
 
44
+ [Creative Commons Attribution 4.0 International (CC BY 4.0)](https://creativecommons.org/licenses/by/4.0/legalcode.en). Retain attribution and identify modifications when reusing the data.
 
45
 
46
  ## Intended Usage
47
 
48
+ Primary: **generalized reconstruction** (§6.1) — learning to map raw per-element channel data to a focused image (learned receive/transmit beamforming, super-resolution, clutter suppression), trained and evaluated against the paired delay-and-sum target. Secondary: motion estimation across the cardiac cine loops (§6.4) and anatomy/cohort interpretation (§6.5).
 
 
 
 
49
 
50
  ## Dataset Characterization
51
 
52
+ - **Data Collection Method:** in-vivo human (research platform) — GE Vivid S70 scanner with raw per-element channel access.
53
+ - **Labeling Method:** derived ground truth — the paired `beamformed_data` is the conventional delay-and-sum reconstruction of each frame.
54
+ - **Acquisition system:** GE Vivid S70 scanner; GE 3Sc-RS 64-element phased-array probe, 0.30 mm pitch; sector scan, 140 acquisition lines over a ~75° sector (±37.5°); 2.5 MHz transmit; apical four-chamber view (A4C).
55
+
56
+ ## Processing the Dataset
57
+
58
+ The acquisitions can be processed with the `pipeline.yaml` definition in this folder and the [zea library](https://github.com/tue-bmd/zea).
59
+
60
+ `zea` streams the data from the Hugging Face Hub and processes it according to the pipeline. You can try it out with the following command:
61
+
62
+ ```bash
63
+ zea process \
64
+ --dataset hf://nvidia/OpenH-RF/technion/cardiac/data/c1.hdf5 \
65
+ --config hf://nvidia/OpenH-RF/technion/cardiac/pipeline.yaml \
66
+ --n-frames 32
67
+ ```
68
+
69
+ Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/technion/cardiac/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF).
70
 
71
  ## Dataset Format
72
 
73
+ [zea v0.1.4](https://github.com/tue-bmd/zea)
74
+
75
+ zea file format, one HDF5 file per cine loop (`data/<subject><clip>.hdf5`, e.g. `a1.hdf5` = subject a, clip 1; `f2.hdf5` = patient-set subject f). The source complex `int16` samples were repackaged to `float32` I/Q with I and Q on the final channel axis (`n_ch = 2`); values are otherwise verbatim. Each file carries `metadata/subject/{id,type=human}`, `metadata/credit`, and `metadata/annotations/{anatomy=cardiac, label=in vivo, view=apical four-chamber (A4C)}`. Probe model (`probe.name = GE 3Sc-RS`) and scanner (`us_machine = GE Vivid S70`) are stored too.
 
 
 
 
 
76
 
77
  ## Dataset Quantification
78
 
79
  **Current OpenH-RF release:** 25 HDF5 files; 14.99 GB (14,992,998,400 bytes) stored; root `zea_version` **0.1.4**. Sizes include all HDF5 contents and use decimal units (MB = 10^6 bytes, GB = 10^9 bytes, TB = 10^12 bytes), not decoded-array memory or original-source download sizes.
80
 
81
  - **Frames / cines / subjects:** 777 frames · 25 cine loops · 6 subjects (a–f).
82
+ - **Train / val / test split:** N/A (contributor to define; the `f2` patient set is a natural held-out cine).
 
83
  - **Stored HDF5 size:** 14.99 GB (14,992,998,400 bytes).
84
 
85
  | Field | Shape | dtype | Units | Description |
 
95
 
96
  ## Subject Metadata
97
 
98
+ Six subjects (a–e main set, f patient set), 777 frames across 25 cine loops. In-vivo human; no PHI stored (only `subject.id` a1…f2, `subject.type = human`, `anatomy = cardiac`, `view = apical four-chamber (A4C)`). Age and sex were not recorded for these acquisitions.
 
 
 
99
 
100
  ## Data Validation
101
 
102
+ `reconstruct.py` reconstructs a B-mode from `raw_data` using the `zea.Pipeline` defined in `pipeline.yaml`: delay-and-sum on a polar scanline grid (one image line per acquisition line, receive dynamic focusing) → envelope detection → normalization → log compression → sector scan conversion.
 
 
 
 
 
 
 
103
 
104
+ Reference output: `bmode.png` — frame 8 of `data/c1.hdf5` (in `assets/`). Each frame is also paired with its conventional delay-and-sum reconstruction in `beamformed_data` (the target for the raw→image learning task) — note its depth scale is approximate because the acquisition axial rate is not stored (see Known Issues).
 
 
 
105
 
106
  ## Known Issues
107
 
108
+ - **Axial sample rate not stored.** The consolidated source `.mat` files do not carry the acquisition header, so `sampling_frequency` (6.0 MHz) is a best estimate and the reconstructed depth scale is approximate. This applies both to the raw→image reconstruction and to the paired `beamformed_data` target (exact in value, approximate in depth axis).
109
+ - **Sector-angle convention.** Lines are stored as ±37.5° centred about boresight, the physically correct convention for a phased array.
 
 
 
 
 
110
 
111
  ## Ethical Considerations
112
 
113
+ **Privacy safeguards (HIPAA and GDPR).** Pre-beamformed RF channel data contains no facial or otherwise identifying imagery. All records are de-identified to the HIPAA Safe Harbor standard, with direct identifiers removed and any dates generalized to bands. As an EU institution we additionally comply with GDPR, holding any pseudonymized subject identifiers separately on access-controlled storage and never sharing them. The released data are de-identified and contain only the channel signals and acquisition metadata.
114
+
115
+ **Ethics.** The data were collected under ethical best practices on healthy volunteers.
 
 
 
 
116
 
117
+ The data is the contributors' own research acquisition, cleared for CC BY 4.0 with no third-party IP encumbrances.
 
technion/cardiac/assets/bmode.png ADDED

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technion/phantom/README.md CHANGED
@@ -1,5 +1,6 @@
1
  ---
2
- pretty_name: "OpenH-RF — Technion Phantom Pre-Beamformed Channel Data"
 
3
  license: cc-by-4.0
4
  task_categories:
5
  - image-to-image
@@ -16,21 +17,23 @@ size_categories:
16
  - n<1K
17
  ---
18
 
19
- # OpenH-RF — Tissue-mimicking phantom pre-beamformed RF channel data
 
 
 
 
20
 
21
  ## Dataset Description
22
 
23
- Pre-beamformed ultrasound **channel data** from a tissue-mimicking phantom,
24
- acquired on the same 64-element phased-array sector scheme as the in-vivo
25
- collection (180 transmit beams steered over ±45.13°, one image line per
26
- transmit), for **calibration and verification**. Contains
27
- resolvable point targets and an anechoic cyst — a clean reference for validating
28
- beamforming and reconstruction. 12 frames, one acquisition.
29
 
30
  ## Dataset Contributor(s)
31
 
32
- Sanketh Vedula, Ortal Senouf, Dean Zadok, Alex M. Bronstein (PI) —
33
- Technion – Israel Institute of Technology. Primary contact: sanketh@campus.technion.ac.il.
 
 
 
34
 
35
  ## Dataset Creation Date
36
 
@@ -38,30 +41,38 @@ Source data 2018; converted to the OpenH-RF (zea) format 07/16/2026.
38
 
39
  ## License / Terms of Use
40
 
41
- CC BY 4.0 (proposal §8).
42
 
43
  ## Intended Usage
44
 
45
- Calibration and end-to-end verification of the beamforming/reconstruction
46
- pipeline (point-target resolution, cyst contrast). Phantom tier (×1).
47
 
48
  ## Dataset Characterization
49
 
50
- - **Data Collection Method:** phantom — tissue-mimicking phantom (Gammex 403GS LE,
51
- Gammex Inc., Middleton, WI, USA), acquired on the same scanner/probe as the
52
- in-vivo collection for calibration.
53
  - **Labeling Method:** N/A (calibration target; known phantom geometry).
54
- - **Acquisition system:** GE Vivid S70 scanner; GE 3Sc-RS 64-element phased-array
55
- probe, 0.30 mm pitch; sector scan, 180 transmit beams steered over ±45.13°
56
- (≈90.25° FOV), one image line per transmit; IQ demodulated at 3.44 MHz.
 
 
 
 
 
 
 
 
 
 
 
 
 
57
 
58
  ## Dataset Format
59
 
60
- zea file format, a single HDF5 file `data/ph.hdf5`. Source complex samples
61
- repackaged to `float32` I/Q (`n_ch = 2`), values verbatim. Carries
62
- `metadata/subject/{id=ph, type=phantom}`, `metadata/credit`, probe model
63
- (`probe.name = GE 3Sc-RS`) and scanner (`us_machine = GE Vivid S70`). ("phantom"
64
- is recorded only as `subject.type`, not as an anatomy or label.)
65
 
66
  ## Dataset Quantification
67
 
@@ -85,21 +96,13 @@ N/A — inanimate phantom (GAMMEX 403GS LE); `subject.type = phantom`.
85
 
86
  ## Data Validation
87
 
88
- `reconstruct.py` reconstructs a B-mode from `raw_data` using the `zea.Pipeline`
89
- in `pipeline.yaml` (delay-and-sum on a polar scanline grid → envelope →
90
- normalization → log compression → sector scan conversion). Run:
91
-
92
- ```
93
- python reconstruct.py data/ph.hdf5 --frame 6 --out bmode_ph.png
94
- ```
95
 
96
- Reference output: `bmode_ph.png` — resolvable point targets and a well-defined
97
- anechoic cyst at ~65 mm.
98
 
99
  ## Known Issues
100
 
101
- - Same scan scheme and probe as the in-vivo bladder collection (GE
102
- tissue-harmonic); acquired as its calibration reference. GAMMEX 403GS LE.
103
 
104
  ## Ethical Considerations
105
 
 
1
  ---
2
+ name: technion-phantom
3
+ pretty_name: "Technion Phantom Pre-Beamformed Channel Data"
4
  license: cc-by-4.0
5
  task_categories:
6
  - image-to-image
 
17
  - n<1K
18
  ---
19
 
20
+ # Technion Tissue-mimicking Phantom Pre-beamformed RF Channel Data
21
+
22
+ ![Tissue-mimicking phantom with point targets and an anechoic cyst](assets/bmode.png)
23
+
24
+ *Frame 6 of [`data/ph.hdf5`](https://huggingface.co/datasets/nvidia/OpenH-RF/blob/main/technion/phantom/data/ph.hdf5), reconstructed by `reconstruct.py`.*
25
 
26
  ## Dataset Description
27
 
28
+ Pre-beamformed ultrasound **channel data** from a tissue-mimicking phantom, acquired on the same 64-element phased-array sector scheme as the in-vivo collection (180 transmit beams steered over ±45.13°, one image line per transmit), for **calibration and verification**. Contains resolvable point targets and an anechoic cyst — a clean reference for validating beamforming and reconstruction. 12 frames, one acquisition.
 
 
 
 
 
29
 
30
  ## Dataset Contributor(s)
31
 
32
+ - Sanketh Vedula <sanketh@campus.technion.ac.il> (primary contact)
33
+ - Ortal Senouf
34
+ - Dean Zadok
35
+ - Alex M. Bronstein (PI)
36
+ - Technion – Israel Institute of Technology
37
 
38
  ## Dataset Creation Date
39
 
 
41
 
42
  ## License / Terms of Use
43
 
44
+ [Creative Commons Attribution 4.0 International (CC BY 4.0)](https://creativecommons.org/licenses/by/4.0/legalcode.en). Retain attribution and identify modifications when reusing the data.
45
 
46
  ## Intended Usage
47
 
48
+ Calibration and end-to-end verification of the beamforming/reconstruction pipeline (point-target resolution, cyst contrast). Phantom tier (×1).
 
49
 
50
  ## Dataset Characterization
51
 
52
+ - **Data Collection Method:** phantom — tissue-mimicking phantom (Gammex 403GS LE, Gammex Inc., Middleton, WI, USA), acquired on the same scanner/probe as the in-vivo collection for calibration.
 
 
53
  - **Labeling Method:** N/A (calibration target; known phantom geometry).
54
+ - **Acquisition system:** GE Vivid S70 scanner; GE 3Sc-RS 64-element phased-array probe, 0.30 mm pitch; sector scan, 180 transmit beams steered over ±45.13° (≈90.25° FOV), one image line per transmit; IQ demodulated at 3.44 MHz.
55
+
56
+ ## Processing the Dataset
57
+
58
+ The acquisitions can be processed with the `pipeline.yaml` definition in this folder and the [zea library](https://github.com/tue-bmd/zea).
59
+
60
+ `zea` streams the data from the Hugging Face Hub and processes it according to the pipeline. You can try it out with the following command:
61
+
62
+ ```bash
63
+ zea process \
64
+ --dataset hf://nvidia/OpenH-RF/technion/phantom/data/ph.hdf5 \
65
+ --config hf://nvidia/OpenH-RF/technion/phantom/pipeline.yaml \
66
+ --n-frames 1
67
+ ```
68
+
69
+ Alternatively, you can use the `reconstruct.py` [script](https://github.com/open-h/OpenH-RF/blob/main/datasets/technion/phantom/reconstruct.py) as provided in the [OpenH-RF GitHub repository](https://github.com/open-h/OpenH-RF).
70
 
71
  ## Dataset Format
72
 
73
+ [zea v0.1.4](https://github.com/tue-bmd/zea)
74
+
75
+ zea file format, a single HDF5 file `data/ph.hdf5`. Source complex samples repackaged to `float32` I/Q (`n_ch = 2`), values verbatim. Carries `metadata/subject/{id=ph, type=phantom}`, `metadata/credit`, probe model (`probe.name = GE 3Sc-RS`) and scanner (`us_machine = GE Vivid S70`). ("phantom" is recorded only as `subject.type`, not as an anatomy or label.)
 
 
76
 
77
  ## Dataset Quantification
78
 
 
96
 
97
  ## Data Validation
98
 
99
+ `reconstruct.py` reconstructs a B-mode from `raw_data` using the `zea.Pipeline` in `pipeline.yaml` (delay-and-sum on a polar scanline grid → envelope → normalization → log compression → sector scan conversion).
 
 
 
 
 
 
100
 
101
+ Reference output: `bmode.png` — frame 6 of `data/ph.hdf5`, shown above: resolvable point targets and a well-defined anechoic cyst at ~65 mm.
 
102
 
103
  ## Known Issues
104
 
105
+ - Same scan scheme and probe as the in-vivo bladder collection (GE tissue-harmonic); acquired as its calibration reference. GAMMEX 403GS LE.
 
106
 
107
  ## Ethical Considerations
108
 
technion/phantom/assets/bmode.png ADDED

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