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dnanexus/dx-toolkit | src/python/dxpy/api.py | project_new | def project_new(input_params={}, always_retry=False, **kwargs):
"""
Invokes the /project/new API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Projects#API-method%3A-%2Fproject%2Fnew
"""
return DXHTTPRequest('/project/new', input_params, always_retry=always_retry, *... | python | def project_new(input_params={}, always_retry=False, **kwargs):
"""
Invokes the /project/new API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Projects#API-method%3A-%2Fproject%2Fnew
"""
return DXHTTPRequest('/project/new', input_params, always_retry=always_retry, *... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | record_add_tags | def record_add_tags(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /record-xxxx/addTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Tags#API-method%3A-%2Fclass-xxxx%2FaddTags
"""
return DXHTTPRequest('/%s/addTags' % object_id, input_... | python | def record_add_tags(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /record-xxxx/addTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Tags#API-method%3A-%2Fclass-xxxx%2FaddTags
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | record_add_types | def record_add_types(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /record-xxxx/addTypes API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Types#API-method%3A-%2Fclass-xxxx%2FaddTypes
"""
return DXHTTPRequest('/%s/addTypes' % object_id, i... | python | def record_add_types(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /record-xxxx/addTypes API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Types#API-method%3A-%2Fclass-xxxx%2FaddTypes
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | record_close | def record_close(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /record-xxxx/close API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Data-Object-Lifecycle#API-method%3A-%2Fclass-xxxx%2Fclose
"""
return DXHTTPRequest('/%s/close' % object_id... | python | def record_close(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /record-xxxx/close API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Data-Object-Lifecycle#API-method%3A-%2Fclass-xxxx%2Fclose
"""
return DXHTTPRequest('/%s/close' % object_id... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | record_describe | def record_describe(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /record-xxxx/describe API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Records#API-method%3A-%2Frecord-xxxx%2Fdescribe
"""
return DXHTTPRequest('/%s/describe' % object_id,... | python | def record_describe(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /record-xxxx/describe API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Records#API-method%3A-%2Frecord-xxxx%2Fdescribe
"""
return DXHTTPRequest('/%s/describe' % object_id,... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | record_get_details | def record_get_details(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /record-xxxx/getDetails API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Details-and-Links#API-method%3A-%2Fclass-xxxx%2FgetDetails
"""
return DXHTTPRequest('/%s/getDet... | python | def record_get_details(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /record-xxxx/getDetails API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Details-and-Links#API-method%3A-%2Fclass-xxxx%2FgetDetails
"""
return DXHTTPRequest('/%s/getDet... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | record_list_projects | def record_list_projects(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /record-xxxx/listProjects API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Cloning#API-method%3A-%2Fclass-xxxx%2FlistProjects
"""
return DXHTTPRequest('/%s/listProjec... | python | def record_list_projects(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /record-xxxx/listProjects API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Cloning#API-method%3A-%2Fclass-xxxx%2FlistProjects
"""
return DXHTTPRequest('/%s/listProjec... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | record_remove_tags | def record_remove_tags(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /record-xxxx/removeTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Tags#API-method%3A-%2Fclass-xxxx%2FremoveTags
"""
return DXHTTPRequest('/%s/removeTags' % objec... | python | def record_remove_tags(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /record-xxxx/removeTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Tags#API-method%3A-%2Fclass-xxxx%2FremoveTags
"""
return DXHTTPRequest('/%s/removeTags' % objec... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | record_remove_types | def record_remove_types(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /record-xxxx/removeTypes API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Types#API-method%3A-%2Fclass-xxxx%2FremoveTypes
"""
return DXHTTPRequest('/%s/removeTypes' % ... | python | def record_remove_types(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /record-xxxx/removeTypes API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Types#API-method%3A-%2Fclass-xxxx%2FremoveTypes
"""
return DXHTTPRequest('/%s/removeTypes' % ... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | record_rename | def record_rename(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /record-xxxx/rename API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Name#API-method%3A-%2Fclass-xxxx%2Frename
"""
return DXHTTPRequest('/%s/rename' % object_id, input_param... | python | def record_rename(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /record-xxxx/rename API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Name#API-method%3A-%2Fclass-xxxx%2Frename
"""
return DXHTTPRequest('/%s/rename' % object_id, input_param... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | record_set_details | def record_set_details(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /record-xxxx/setDetails API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Details-and-Links#API-method%3A-%2Fclass-xxxx%2FsetDetails
"""
return DXHTTPRequest('/%s/setDet... | python | def record_set_details(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /record-xxxx/setDetails API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Details-and-Links#API-method%3A-%2Fclass-xxxx%2FsetDetails
"""
return DXHTTPRequest('/%s/setDet... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | record_set_properties | def record_set_properties(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /record-xxxx/setProperties API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Properties#API-method%3A-%2Fclass-xxxx%2FsetProperties
"""
return DXHTTPRequest('/%s/setP... | python | def record_set_properties(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /record-xxxx/setProperties API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Properties#API-method%3A-%2Fclass-xxxx%2FsetProperties
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | record_set_visibility | def record_set_visibility(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /record-xxxx/setVisibility API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Visibility#API-method%3A-%2Fclass-xxxx%2FsetVisibility
"""
return DXHTTPRequest('/%s/setV... | python | def record_set_visibility(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /record-xxxx/setVisibility API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Visibility#API-method%3A-%2Fclass-xxxx%2FsetVisibility
"""
return DXHTTPRequest('/%s/setV... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | system_describe_data_objects | def system_describe_data_objects(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/describeDataObjects API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/System-Methods#API-method:-/system/describeDataObjects
"""
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"""
Invokes the /system/describeDataObjects API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/System-Methods#API-method:-/system/describeDataObjects
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | system_describe_executions | def system_describe_executions(input_params={}, always_retry=True, **kwargs):
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Invokes the /system/describeExecutions API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/System-Methods#API-method:-/system/describeExecutions
"""
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"""
Invokes the /system/describeExecutions API method.
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Invokes the /system/describeProjects API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/System-Methods#API-method:-/system/describeProjects
"""
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"""
Invokes the /system/describeProjects API method.
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dnanexus/dx-toolkit | src/python/dxpy/api.py | system_find_affiliates | def system_find_affiliates(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/findAffiliates API method.
"""
return DXHTTPRequest('/system/findAffiliates', input_params, always_retry=always_retry, **kwargs) | python | def system_find_affiliates(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/findAffiliates API method.
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return DXHTTPRequest('/system/findAffiliates', input_params, always_retry=always_retry, **kwargs) | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | system_find_apps | def system_find_apps(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/findApps API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Search#API-method%3A-%2Fsystem%2FfindApps
"""
return DXHTTPRequest('/system/findApps', input_params, always_retry=a... | python | def system_find_apps(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/findApps API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Search#API-method%3A-%2Fsystem%2FfindApps
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dnanexus/dx-toolkit | src/python/dxpy/api.py | system_find_data_objects | def system_find_data_objects(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/findDataObjects API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Search#API-method%3A-%2Fsystem%2FfindDataObjects
"""
return DXHTTPRequest('/system/findDataObjects',... | python | def system_find_data_objects(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/findDataObjects API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Search#API-method%3A-%2Fsystem%2FfindDataObjects
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | system_find_global_workflows | def system_find_global_workflows(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/findGlobalWorkflows API method.
"""
return DXHTTPRequest('/system/findGlobalWorkflows', input_params, always_retry=always_retry, **kwargs) | python | def system_find_global_workflows(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/findGlobalWorkflows API method.
"""
return DXHTTPRequest('/system/findGlobalWorkflows', input_params, always_retry=always_retry, **kwargs) | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | system_resolve_data_objects | def system_resolve_data_objects(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/resolveDataObjects API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/System-Methods#API-method:-/system/resolveDataObjects
"""
return DXHTTPRequest('/system/resolv... | python | def system_resolve_data_objects(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/resolveDataObjects API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/System-Methods#API-method:-/system/resolveDataObjects
"""
return DXHTTPRequest('/system/resolv... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | system_find_executions | def system_find_executions(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/findExecutions API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Search#API-method%3A-%2Fsystem%2FfindExecutions
"""
return DXHTTPRequest('/system/findExecutions', inpu... | python | def system_find_executions(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/findExecutions API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Search#API-method%3A-%2Fsystem%2FfindExecutions
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | system_find_analyses | def system_find_analyses(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/findAnalyses API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Search#API-method%3A-%2Fsystem%2FfindAnalyses
"""
return DXHTTPRequest('/system/findAnalyses', input_params... | python | def system_find_analyses(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/findAnalyses API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Search#API-method%3A-%2Fsystem%2FfindAnalyses
"""
return DXHTTPRequest('/system/findAnalyses', input_params... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | system_find_databases | def system_find_databases(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/findDatabases API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Search#API-method%3A-%2Fsystem%2FfindDatabases
"""
return DXHTTPRequest('/system/findDatabases', input_pa... | python | def system_find_databases(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/findDatabases API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Search#API-method%3A-%2Fsystem%2FfindDatabases
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dnanexus/dx-toolkit | src/python/dxpy/api.py | system_find_jobs | def system_find_jobs(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/findJobs API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Search#API-method%3A-%2Fsystem%2FfindJobs
"""
return DXHTTPRequest('/system/findJobs', input_params, always_retry=a... | python | def system_find_jobs(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/findJobs API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Search#API-method%3A-%2Fsystem%2FfindJobs
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dnanexus/dx-toolkit | src/python/dxpy/api.py | system_find_projects | def system_find_projects(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/findProjects API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Search#API-method%3A-%2Fsystem%2FfindProjects
"""
return DXHTTPRequest('/system/findProjects', input_params... | python | def system_find_projects(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/findProjects API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Search#API-method%3A-%2Fsystem%2FfindProjects
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dnanexus/dx-toolkit | src/python/dxpy/api.py | system_find_users | def system_find_users(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/findUsers API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Search#API-method%3A-%2Fsystem%2FfindUsers
"""
return DXHTTPRequest('/system/findUsers', input_params, always_ret... | python | def system_find_users(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/findUsers API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Search#API-method%3A-%2Fsystem%2FfindUsers
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dnanexus/dx-toolkit | src/python/dxpy/api.py | system_find_project_members | def system_find_project_members(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/findProjectMembers API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Search#API-method:-/system/findProjectMembers
"""
return DXHTTPRequest('/system/findProjectMem... | python | def system_find_project_members(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/findProjectMembers API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Search#API-method:-/system/findProjectMembers
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dnanexus/dx-toolkit | src/python/dxpy/api.py | system_find_orgs | def system_find_orgs(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/findOrgs API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Search#API-method:-/system/findOrgs
"""
return DXHTTPRequest('/system/findOrgs', input_params, always_retry=always_... | python | def system_find_orgs(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/findOrgs API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Search#API-method:-/system/findOrgs
"""
return DXHTTPRequest('/system/findOrgs', input_params, always_retry=always_... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | system_generate_batch_inputs | def system_generate_batch_inputs(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/generateBatchInputs API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Search#API-method:-/system/generateBatchInputs
"""
return DXHTTPRequest('/system/generateBat... | python | def system_generate_batch_inputs(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/generateBatchInputs API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Search#API-method:-/system/generateBatchInputs
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | system_global_search | def system_global_search(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/globalSearch API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Search#API-method:-/system/globalSearch
"""
return DXHTTPRequest('/system/globalSearch', input_params, alwa... | python | def system_global_search(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/globalSearch API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Search#API-method:-/system/globalSearch
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | system_greet | def system_greet(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/greet API method.
"""
return DXHTTPRequest('/system/greet', input_params, always_retry=always_retry, **kwargs) | python | def system_greet(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/greet API method.
"""
return DXHTTPRequest('/system/greet', input_params, always_retry=always_retry, **kwargs) | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | system_headers | def system_headers(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/headers API method.
"""
return DXHTTPRequest('/system/headers', input_params, always_retry=always_retry, **kwargs) | python | def system_headers(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/headers API method.
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | system_shorten_url | def system_shorten_url(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/shortenURL API method.
"""
return DXHTTPRequest('/system/shortenURL', input_params, always_retry=always_retry, **kwargs) | python | def system_shorten_url(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/shortenURL API method.
"""
return DXHTTPRequest('/system/shortenURL', input_params, always_retry=always_retry, **kwargs) | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | system_whoami | def system_whoami(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/whoami API method.
"""
return DXHTTPRequest('/system/whoami', input_params, always_retry=always_retry, **kwargs) | python | def system_whoami(input_params={}, always_retry=True, **kwargs):
"""
Invokes the /system/whoami API method.
"""
return DXHTTPRequest('/system/whoami', input_params, always_retry=always_retry, **kwargs) | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | user_describe | def user_describe(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /user-xxxx/describe API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Users#API-method%3A-%2Fuser-xxxx%2Fdescribe
"""
return DXHTTPRequest('/%s/describe' % object_id, input_p... | python | def user_describe(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /user-xxxx/describe API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Users#API-method%3A-%2Fuser-xxxx%2Fdescribe
"""
return DXHTTPRequest('/%s/describe' % object_id, input_p... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | user_update | def user_update(object_id, input_params={}, always_retry=False, **kwargs):
"""
Invokes the /user-xxxx/update API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Users#API-method%3A-%2Fuser-xxxx%2Fupdate
"""
return DXHTTPRequest('/%s/update' % object_id, input_params, ... | python | def user_update(object_id, input_params={}, always_retry=False, **kwargs):
"""
Invokes the /user-xxxx/update API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Users#API-method%3A-%2Fuser-xxxx%2Fupdate
"""
return DXHTTPRequest('/%s/update' % object_id, input_params, ... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | workflow_add_stage | def workflow_add_stage(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/addStage API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Workflows-and-Analyses#API-method%3A-%2Fworkflow-xxxx%2FaddStage
"""
return DXHTTPRequest('/%s/... | python | def workflow_add_stage(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/addStage API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Workflows-and-Analyses#API-method%3A-%2Fworkflow-xxxx%2FaddStage
"""
return DXHTTPRequest('/%s/... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | workflow_add_tags | def workflow_add_tags(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/addTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Tags#API-method%3A-%2Fclass-xxxx%2FaddTags
"""
return DXHTTPRequest('/%s/addTags' % object_id, in... | python | def workflow_add_tags(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/addTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Tags#API-method%3A-%2Fclass-xxxx%2FaddTags
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | workflow_add_types | def workflow_add_types(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/addTypes API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Types#API-method%3A-%2Fclass-xxxx%2FaddTypes
"""
return DXHTTPRequest('/%s/addTypes' % object_i... | python | def workflow_add_types(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/addTypes API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Types#API-method%3A-%2Fclass-xxxx%2FaddTypes
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | workflow_close | def workflow_close(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/close API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Data-Object-Lifecycle#API-method%3A-%2Fclass-xxxx%2Fclose
"""
return DXHTTPRequest('/%s/close' % objec... | python | def workflow_close(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/close API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Data-Object-Lifecycle#API-method%3A-%2Fclass-xxxx%2Fclose
"""
return DXHTTPRequest('/%s/close' % objec... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | workflow_describe | def workflow_describe(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/describe API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Workflows-and-Analyses#API-method%3A-%2Fworkflow-xxxx%2Fdescribe
"""
return DXHTTPRequest('/%s/d... | python | def workflow_describe(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/describe API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Workflows-and-Analyses#API-method%3A-%2Fworkflow-xxxx%2Fdescribe
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | workflow_dry_run | def workflow_dry_run(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/dryRun API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Workflows-and-Analyses#API-method%3A-%2Fworkflow-xxxx%2FdryRun
"""
return DXHTTPRequest('/%s/dryRun... | python | def workflow_dry_run(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/dryRun API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Workflows-and-Analyses#API-method%3A-%2Fworkflow-xxxx%2FdryRun
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | workflow_get_details | def workflow_get_details(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/getDetails API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Details-and-Links#API-method%3A-%2Fclass-xxxx%2FgetDetails
"""
return DXHTTPRequest('/%s/ge... | python | def workflow_get_details(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/getDetails API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Details-and-Links#API-method%3A-%2Fclass-xxxx%2FgetDetails
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dnanexus/dx-toolkit | src/python/dxpy/api.py | workflow_is_stage_compatible | def workflow_is_stage_compatible(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/isStageCompatible API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Workflows-and-Analyses#API-method%3A-%2Fworkflow-xxxx%2FisStageCompatible
"""
... | python | def workflow_is_stage_compatible(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/isStageCompatible API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Workflows-and-Analyses#API-method%3A-%2Fworkflow-xxxx%2FisStageCompatible
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | workflow_list_projects | def workflow_list_projects(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/listProjects API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Cloning#API-method%3A-%2Fclass-xxxx%2FlistProjects
"""
return DXHTTPRequest('/%s/listPr... | python | def workflow_list_projects(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/listProjects API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Cloning#API-method%3A-%2Fclass-xxxx%2FlistProjects
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | workflow_move_stage | def workflow_move_stage(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/moveStage API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Workflows-and-Analyses#API-method%3A-%2Fworkflow-xxxx%2FmoveStage
"""
return DXHTTPRequest('/... | python | def workflow_move_stage(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/moveStage API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Workflows-and-Analyses#API-method%3A-%2Fworkflow-xxxx%2FmoveStage
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | workflow_overwrite | def workflow_overwrite(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/overwrite API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Workflows-and-Analyses#API-method%3A-%2Fworkflow-xxxx%2Foverwrite
"""
return DXHTTPRequest('/%... | python | def workflow_overwrite(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/overwrite API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Workflows-and-Analyses#API-method%3A-%2Fworkflow-xxxx%2Foverwrite
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | workflow_remove_stage | def workflow_remove_stage(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/removeStage API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Workflows-and-Analyses#API-method%3A-%2Fworkflow-xxxx%2FremoveStage
"""
return DXHTTPRequ... | python | def workflow_remove_stage(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/removeStage API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Workflows-and-Analyses#API-method%3A-%2Fworkflow-xxxx%2FremoveStage
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | workflow_remove_tags | def workflow_remove_tags(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/removeTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Tags#API-method%3A-%2Fclass-xxxx%2FremoveTags
"""
return DXHTTPRequest('/%s/removeTags' % o... | python | def workflow_remove_tags(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/removeTags API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Tags#API-method%3A-%2Fclass-xxxx%2FremoveTags
"""
return DXHTTPRequest('/%s/removeTags' % o... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | workflow_remove_types | def workflow_remove_types(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/removeTypes API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Types#API-method%3A-%2Fclass-xxxx%2FremoveTypes
"""
return DXHTTPRequest('/%s/removeTypes... | python | def workflow_remove_types(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/removeTypes API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Types#API-method%3A-%2Fclass-xxxx%2FremoveTypes
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | workflow_rename | def workflow_rename(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/rename API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Name#API-method%3A-%2Fclass-xxxx%2Frename
"""
return DXHTTPRequest('/%s/rename' % object_id, input_p... | python | def workflow_rename(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/rename API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Name#API-method%3A-%2Fclass-xxxx%2Frename
"""
return DXHTTPRequest('/%s/rename' % object_id, input_p... | [
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dnanexus/dx-toolkit | src/python/dxpy/api.py | workflow_validate_batch | def workflow_validate_batch(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/validateBatch API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Workflows-and-Analyses#API-method%3A-%2Fworkflow-xxxx%2FvalidateBatch
"""
return DXHT... | python | def workflow_validate_batch(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/validateBatch API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Workflows-and-Analyses#API-method%3A-%2Fworkflow-xxxx%2FvalidateBatch
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dnanexus/dx-toolkit | src/python/dxpy/api.py | workflow_set_details | def workflow_set_details(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/setDetails API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Details-and-Links#API-method%3A-%2Fclass-xxxx%2FsetDetails
"""
return DXHTTPRequest('/%s/se... | python | def workflow_set_details(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/setDetails API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Details-and-Links#API-method%3A-%2Fclass-xxxx%2FsetDetails
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dnanexus/dx-toolkit | src/python/dxpy/api.py | workflow_set_properties | def workflow_set_properties(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/setProperties API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Properties#API-method%3A-%2Fclass-xxxx%2FsetProperties
"""
return DXHTTPRequest('/%s/... | python | def workflow_set_properties(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/setProperties API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Properties#API-method%3A-%2Fclass-xxxx%2FsetProperties
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dnanexus/dx-toolkit | src/python/dxpy/api.py | workflow_set_stage_inputs | def workflow_set_stage_inputs(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/setStageInputs API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Workflows-and-Analyses#API-method%3A-%2Fworkflow-xxxx%2FsetStageInputs
"""
return ... | python | def workflow_set_stage_inputs(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/setStageInputs API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Workflows-and-Analyses#API-method%3A-%2Fworkflow-xxxx%2FsetStageInputs
"""
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dnanexus/dx-toolkit | src/python/dxpy/api.py | workflow_set_visibility | def workflow_set_visibility(object_id, input_params={}, always_retry=True, **kwargs):
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Invokes the /workflow-xxxx/setVisibility API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Visibility#API-method%3A-%2Fclass-xxxx%2FsetVisibility
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dnanexus/dx-toolkit | src/python/dxpy/api.py | workflow_update | def workflow_update(object_id, input_params={}, always_retry=True, **kwargs):
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Invokes the /workflow-xxxx/update API method.
For more info, see: https://wiki.dnanexus.com/API-Specification-v1.0.0/Workflows-and-Analyses#API-method%3A-%2Fworkflow-xxxx%2Fupdate
"""
return DXHTTPRequest('/%s/update'... | python | def workflow_update(object_id, input_params={}, always_retry=True, **kwargs):
"""
Invokes the /workflow-xxxx/update API method.
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Invokes the /workflow-xxxx/updateStageExecutable API method.
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Invokes the /workflow-xxxx/updateStageExecutable API method.
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dnanexus/dx-toolkit | src/python/dxpy/scripts/dx_build_report_html.py | _image_to_data | def _image_to_data(img):
"""
Does the work of encoding an image into Base64
"""
# If the image is already encoded in Base64, we have nothing to do here
if "src" not in img.attrs or img["src"].startswith("data:"):
return
elif re.match("https?://", img["src"]):
img_data = _load_url... | python | def _image_to_data(img):
"""
Does the work of encoding an image into Base64
"""
# If the image is already encoded in Base64, we have nothing to do here
if "src" not in img.attrs or img["src"].startswith("data:"):
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"""
Takes a link element and turns it into an inline style link if applicable
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dnanexus/dx-toolkit | src/python/dxpy/scripts/dx_build_report_html.py | _bake_script | def _bake_script(script):
"""
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script_data = _load_url(script["src"]).read()
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script_data = _load_file(script["s... | python | def _bake_script(script):
"""
Takes a script element and bakes it in only if it contains a remote resource
"""
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if re.match("https?://", script["src"]):
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dnanexus/dx-toolkit | src/python/dxpy/scripts/dx_build_report_html.py | _load_file | def _load_file(path):
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parser.error("{} was not found!".format(path))
if USING_PYTHON2:
mode = "r"
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mode = "rb"
try:
f = open(path, mode)
return f
except IOError as ex:... | python | def _load_file(path):
"""
Loads a file from the local filesystem
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if not os.path.exists(path):
parser.error("{} was not found!".format(path))
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"""
Loads a URL resource from a remote server
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try:
response = requests.get(url)
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"""
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dnanexus/dx-toolkit | src/python/dxpy/scripts/dx_build_report_html.py | _get_bs4_string | def _get_bs4_string(soup):
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"""
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dnanexus/dx-toolkit | src/python/dxpy/scripts/dx_build_report_html.py | bake | def bake(src):
"""
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path = os.path.dirname(src)
filename = os.path.basename(src)
html = _load_file(src).read()
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html = "<html><body><img src='{}'/></body></html>".format(cgi.escape(f... | python | def bake(src):
"""
Runs the encoder on the given source file
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src = os.path.realpath(src)
path = os.path.dirname(src)
filename = os.path.basename(src)
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"""
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dnanexus/dx-toolkit | src/python/dxpy/scripts/dx_build_report_html.py | create_record | def create_record(destination, file_ids, width=None, height=None):
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dnanexus/dx-toolkit | src/python/dxpy/scripts/dx_build_report_html.py | save | def save(filename, html):
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out_file.write(html)
out_file.close()
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out_file = open(filename, "w")
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dnanexus/dx-toolkit | src/python/dxpy/utils/describe.py | get_size_str | def get_size_str(size):
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level = int(min(math.floor(magnitude // 3), 4))
retu... | python | def get_size_str(size):
"""
Formats a byte size as a string.
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dnanexus/dx-toolkit | src/python/dxpy/utils/describe.py | is_job_ref | def is_job_ref(thing, reftype=dict):
'''
:param thing: something that might be a job-based object reference hash
:param reftype: type that a job-based object reference would be (default is dict)
'''
return isinstance(thing, reftype) and \
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'''
:param thing: something that might be a job-based object reference hash
:param reftype: type that a job-based object reference would be (default is dict)
'''
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dnanexus/dx-toolkit | src/python/dxpy/utils/describe.py | print_desc | def print_desc(desc, verbose=False):
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dnanexus/dx-toolkit | src/python/dxpy/utils/describe.py | get_ls_l_desc | def get_ls_l_desc(desc, include_folder=False, include_project=False):
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dnanexus/dx-toolkit | src/python/dxpy/utils/describe.py | get_find_executions_string | def get_find_executions_string(desc, has_children, single_result=False, show_outputs=True,
is_cached_result=False):
'''
:param desc: hash of execution's describe output
:param has_children: whether the execution has children to be printed
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dnanexus/dx-toolkit | src/python/dxpy/system_requirements.py | SystemRequirementsDict.from_instance_count | def from_instance_count(cls, instance_count_arg, entrypoint="*"):
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"""
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dnanexus/dx-toolkit | src/python/dxpy/system_requirements.py | SystemRequirementsDict.from_instance_type | def from_instance_type(cls, instance_type_arg, entrypoint="*"):
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dnanexus/dx-toolkit | src/python/dxpy/system_requirements.py | SystemRequirementsDict.from_sys_requirements | def from_sys_requirements(cls, system_requirements, _type='all'):
"""
Returns SystemRequirementsDict encapsulating system requirements.
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dnanexus/dx-toolkit | src/python/dxpy/system_requirements.py | SystemRequirementsDict.override_cluster_spec | def override_cluster_spec(self, srd):
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dnanexus/dx-toolkit | src/python/dxpy/system_requirements.py | SystemRequirementsDict._add_dict_values | def _add_dict_values(self, d1, d2):
"""
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d2 = {'a': {'y': lmn}, 'b': {'y': rst}}
will return: {'a': {'x': pqr, 'y': lmn}, 'b': {'y': rst}}.
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"""
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d1 = {'a': {'x': pqr}}
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dnanexus/dx-toolkit | src/python/dxpy/bindings/dxrecord.py | new_dxrecord | def new_dxrecord(details=None, **kwargs):
'''
:rtype: :class:`DXRecord`
:param details: The contents of the record to be created.
:type details: dict
Additional optional parameters not listed: all those under
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Creates a new remote r... | python | def new_dxrecord(details=None, **kwargs):
'''
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:param details: The contents of the record to be created.
:type details: dict
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dnanexus/dx-toolkit | src/python/dxpy/bindings/dxrecord.py | DXRecord._new | def _new(self, dx_hash, close=False, **kwargs):
"""
:param dx_hash: Standard hash populated in :func:`dxpy.bindings.DXDataObject.new()` containing attributes common to all data object classes.
:type dx_hash: dict
:param init_from: Record from which to initialize the metadata
:typ... | python | def _new(self, dx_hash, close=False, **kwargs):
"""
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dnanexus/dx-toolkit | src/python/dxpy/utils/executable_unbuilder.py | _recursive_cleanup | def _recursive_cleanup(foo):
"""
Aggressively cleans up things that look empty.
"""
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if isinstance(val, dict):
_recursive_cleanup(val)
if val == "" or val == [] or val == {}:
del... | python | def _recursive_cleanup(foo):
"""
Aggressively cleans up things that look empty.
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dnanexus/dx-toolkit | src/python/dxpy/utils/executable_unbuilder.py | dump_executable | def dump_executable(executable, destination_directory, omit_resources=False, describe_output={}):
"""
Reconstitutes an app, applet, or a workflow into a directory that would
create a functionally identical executable if "dx build" were run on it.
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"""
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dnanexus/dx-toolkit | src/python/dxpy/bindings/search.py | resolve_data_objects | def resolve_data_objects(objects, project=None, folder=None, batchsize=1000):
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dnanexus/dx-toolkit | src/python/dxpy/bindings/search.py | _find | def _find(api_method, query, limit, return_handler, first_page_size, **kwargs):
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dnanexus/dx-toolkit | src/python/dxpy/bindings/search.py | find_data_objects | def find_data_objects(classname=None, state=None, visibility=None,
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dnanexus/dx-toolkit | src/python/dxpy/bindings/search.py | find_executions | def find_executions(classname=None, launched_by=None, executable=None, project=None,
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dnanexus/dx-toolkit | src/python/dxpy/bindings/search.py | find_projects | def find_projects(name=None, name_mode='exact', properties=None, tags=None,
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dnanexus/dx-toolkit | src/python/dxpy/bindings/search.py | find_global_executables | def find_global_executables(method, name=None, name_mode='exact', category=None,
all_versions=None, published=None,
billed_to=None, created_by=None, developer=None,
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dnanexus/dx-toolkit | src/python/dxpy/bindings/search.py | find_apps | def find_apps(name=None, name_mode='exact', category=None,
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dnanexus/dx-toolkit | src/python/dxpy/bindings/search.py | find_one_data_object | def find_one_data_object(zero_ok=False, more_ok=True, **kwargs):
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dnanexus/dx-toolkit | src/python/dxpy/bindings/search.py | _org_find | def _org_find(api_method, org_id, query, first_page_size=100):
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dnanexus/dx-toolkit | src/python/dxpy/bindings/search.py | org_find_members | def org_find_members(org_id=None, level=None, describe=False):
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dnanexus/dx-toolkit | src/python/dxpy/bindings/search.py | org_find_projects | def org_find_projects(org_id=None, name=None, name_mode='exact', ids=None, properties=None, tags=None, describe=False,
public=None, created_after=None, created_before=None, region=None, containsPHI=None):
"""
:param org_id: ID of the organization
:type org_id: string
:param name: N... | python | def org_find_projects(org_id=None, name=None, name_mode='exact', ids=None, properties=None, tags=None, describe=False,
public=None, created_after=None, created_before=None, region=None, containsPHI=None):
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:param org_id: ID of the organization
:type org_id: string
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dnanexus/dx-toolkit | src/python/dxpy/bindings/search.py | org_find_apps | def org_find_apps(org_id,
name=None,
name_mode='exact',
category=None,
all_versions=None,
published=None,
created_by=None,
developer=None,
authorized_user=None,
... | python | def org_find_apps(org_id,
name=None,
name_mode='exact',
category=None,
all_versions=None,
published=None,
created_by=None,
developer=None,
authorized_user=None,
... | [
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dnanexus/dx-toolkit | src/python/dxpy/bindings/search.py | find_orgs | def find_orgs(query, first_page_size=10):
"""
:param query: The input to the /system/findOrgs API method.
:type query: dict
:param first_page_size: The number of results that the initial
/system/findOrgs API call will return; default 10, max 1000. Subsequent
calls will raise the number ... | python | def find_orgs(query, first_page_size=10):
"""
:param query: The input to the /system/findOrgs API method.
:type query: dict
:param first_page_size: The number of results that the initial
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dnanexus/dx-toolkit | src/python/dxpy/bindings/download_all_inputs.py | _create_dirs | def _create_dirs(idir, dirs):
'''
Create a set of directories, so we could store the input files.
For example, seq1 could be stored under:
/in/seq1/NC_001122.fasta
TODO: this call could fail, we need to report a reasonable error code
Note that we create a directory for every file array, ev... | python | def _create_dirs(idir, dirs):
'''
Create a set of directories, so we could store the input files.
For example, seq1 could be stored under:
/in/seq1/NC_001122.fasta
TODO: this call could fail, we need to report a reasonable error code
Note that we create a directory for every file array, ev... | [
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dnanexus/dx-toolkit | src/python/dxpy/bindings/download_all_inputs.py | _gen_helper_dict | def _gen_helper_dict(filtered_inputs):
'''
Create a dict of values for the downloaded files. This is similar to the variables created
when running a bash app.
'''
file_key_descs, _ignore = file_load_utils.analyze_bash_vars(
file_load_utils.get_input_json_file(), None)
flattened_dict = ... | python | def _gen_helper_dict(filtered_inputs):
'''
Create a dict of values for the downloaded files. This is similar to the variables created
when running a bash app.
'''
file_key_descs, _ignore = file_load_utils.analyze_bash_vars(
file_load_utils.get_input_json_file(), None)
flattened_dict = ... | [
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