python_code stringlengths 0 4.04M | repo_name stringlengths 8 58 | file_path stringlengths 5 147 |
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#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import argparse
import io
import logging
import os
import sys
import threading
import traceback
impor... | aepsych-main | aepsych/server/server.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
from .server import AEPsychServer
__all__ = ["AEPsychServer"]
| aepsych-main | aepsych/server/__init__.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import logging
import warnings
import aepsych.utils_logging as utils_logging
import pandas as pd
fr... | aepsych-main | aepsych/server/replay.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import argparse
import logging
import os
import sys
import aepsych.database.db as db
import aepsych.... | aepsych-main | aepsych/server/utils.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import json
import logging
import select
import socket
import sys
import aepsych.utils_logging as ut... | aepsych-main | aepsych/server/sockets.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import logging
from collections.abc import Mapping
import aepsych.utils_logging as utils_logging
lo... | aepsych-main | aepsych/server/message_handlers/handle_ask.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
from .handle_ask import handle_ask
from .handle_can_model import handle_can_model
from .handle_exit i... | aepsych-main | aepsych/server/message_handlers/__init__.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
def handle_finish_strategy(self, request):
self.strat.finish()
return f"finished strategy {s... | aepsych-main | aepsych/server/message_handlers/handle_finish_strategy.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import logging
import aepsych.utils_logging as utils_logging
import numpy as np
logger = utils_logg... | aepsych-main | aepsych/server/message_handlers/handle_query.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import logging
import aepsych.utils_logging as utils_logging
logger = utils_logging.getLogger(loggin... | aepsych-main | aepsych/server/message_handlers/handle_get_config.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import logging
import aepsych.utils_logging as utils_logging
logger = utils_logging.getLogger(loggi... | aepsych-main | aepsych/server/message_handlers/handle_can_model.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import io
import logging
from collections.abc import Iterable
import aepsych.utils_logging as utils_... | aepsych-main | aepsych/server/message_handlers/handle_tell.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import logging
import aepsych.utils_logging as utils_logging
logger = utils_logging.getLogger(loggi... | aepsych-main | aepsych/server/message_handlers/handle_exit.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import logging
from typing import Any, Dict
import aepsych.utils_logging as utils_logging
logger =... | aepsych-main | aepsych/server/message_handlers/handle_info.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import logging
import aepsych.utils_logging as utils_logging
logger = utils_logging.getLogger(loggi... | aepsych-main | aepsych/server/message_handlers/handle_resume.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import logging
import aepsych.utils_logging as utils_logging
from aepsych.config import Config
from... | aepsych-main | aepsych/server/message_handlers/handle_setup.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import logging
import aepsych.utils_logging as utils_logging
logger = utils_logging.getLogger(loggi... | aepsych-main | aepsych/server/message_handlers/handle_params.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
from __future__ import annotations
from copy import deepcopy
from typing import Any, Optional, Tuple... | aepsych-main | aepsych/models/semi_p.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import time
from typing import Any, Dict, Optional, Union
import gpytorch
import numpy as np
import t... | aepsych-main | aepsych/models/pairwise_probit.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import gpytorch
import torch
from aepsych.likelihoods import OrdinalLikelihood
from aepsych.models im... | aepsych-main | aepsych/models/ordinal_gp.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
from __future__ import annotations
import warnings
from typing import Dict, List, Optional, Sequence... | aepsych-main | aepsych/models/monotonic_rejection_gp.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
from __future__ import annotations
from typing import Any, List, Optional, Union
import gpytorch
im... | aepsych-main | aepsych/models/monotonic_projection_gp.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import sys
from ..config import Config
from .exact_gp import ContinuousRegressionGP, ExactGP
from .g... | aepsych-main | aepsych/models/__init__.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
from typing import Dict, Optional, Tuple, Union
import gpytorch
import numpy as np
import torch
fr... | aepsych-main | aepsych/models/variational_gp.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
from __future__ import annotations
from copy import deepcopy
from typing import Optional, Tuple, Unio... | aepsych-main | aepsych/models/gp_classification.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
from __future__ import annotations
from copy import deepcopy
from typing import Dict, Optional, Tuple... | aepsych-main | aepsych/models/gp_regression.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
from __future__ import annotations
from typing import Optional, Union
import gpytorch
import torch
... | aepsych-main | aepsych/models/derivative_gp.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
from __future__ import annotations
from typing import Optional
import gpytorch
import torch
from ... | aepsych-main | aepsych/models/multitask_regression.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
from __future__ import annotations
from typing import List, Mapping, Optional, Tuple, Union
import n... | aepsych-main | aepsych/models/utils.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
from __future__ import annotations
import dataclasses
import time
from typing import Dict, List, Opt... | aepsych-main | aepsych/models/surrogate.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
from aepsych.models.base import AEPsychModel
from botorch.models import SingleTaskGP
from gpytorch.m... | aepsych-main | aepsych/models/exact_gp.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
from __future__ import annotations
import abc
import time
from typing import Any, Dict, List, Mappin... | aepsych-main | aepsych/models/base.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
from typing import Optional
import torch
from aepsych.acquisition.objective import AEPsychObjective,... | aepsych-main | aepsych/likelihoods/semi_p.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
from typing import Callable, Optional
import gpytorch
import torch
from gpytorch.likelihoods import ... | aepsych-main | aepsych/likelihoods/ordinal.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import sys
from ..config import Config
from .bernoulli import BernoulliObjectiveLikelihood
from .ord... | aepsych-main | aepsych/likelihoods/__init__.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
from typing import Callable
import torch
from aepsych.config import Config
from gpytorch.likelihoods ... | aepsych-main | aepsych/likelihoods/bernoulli.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import warnings
from typing import Optional, Union
import numpy as np
import torch
from aepsych.conf... | aepsych-main | aepsych/generators/manual_generator.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import warnings
from aepsych.config import Config
from aepsych.generators import OptimizeAcqfGenerat... | aepsych-main | aepsych/generators/pairwise_optimize_acqf_generator.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
from __future__ import annotations
from typing import Dict, Optional, Union
import numpy as np
impor... | aepsych-main | aepsych/generators/sobol_generator.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import warnings
from aepsych.config import Config
from .sobol_generator import SobolGenerator
cla... | aepsych-main | aepsych/generators/pairwise_sobol_generator.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
from typing import Type
import torch
from aepsych.acquisition.objective.semi_p import SemiPThreshold... | aepsych-main | aepsych/generators/semi_p.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
from typing import Any, Dict, Optional, Sequence
import torch
from aepsych.acquisition.monotonic_rej... | aepsych-main | aepsych/generators/monotonic_rejection_generator.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import sys
from ..config import Config
from .epsilon_greedy_generator import EpsilonGreedyGenerator
... | aepsych-main | aepsych/generators/__init__.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
from __future__ import annotations
import time
from inspect import signature
from typing import Any, c... | aepsych-main | aepsych/generators/optimize_acqf_generator.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
from typing import List, Optional, Type
import numpy as np
import torch
from aepsych.acquisition.obj... | aepsych-main | aepsych/generators/monotonic_thompson_sampler_generator.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import numpy as np
import torch
from aepsych.config import Config
from ..models.base import ModelPro... | aepsych-main | aepsych/generators/epsilon_greedy_generator.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
from __future__ import annotations
from typing import Dict
from ax.modelbridge import Models
from a... | aepsych-main | aepsych/generators/multi_outcome_generator.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
from typing import Dict, Optional, Union
import numpy as np
import torch
from aepsych.config import ... | aepsych-main | aepsych/generators/random_generator.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import abc
from inspect import signature
from typing import Any, Dict, Generic, Protocol, runtime_check... | aepsych-main | aepsych/generators/base.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
from typing import Any, Dict
from ax.core.experiment import Experiment
from ax.modelbridge.completio... | aepsych-main | aepsych/generators/completion_criterion/min_asks.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
from typing import Any, Dict
from aepsych.config import Config, ConfigurableMixin
from ax.core impor... | aepsych-main | aepsych/generators/completion_criterion/run_indefinitely.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import sys
from aepsych.config import Config
from .min_asks import MinAsks
from .min_total_outcome_... | aepsych-main | aepsych/generators/completion_criterion/__init__.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
from typing import Any, Dict
from aepsych.config import Config, ConfigurableMixin
from ax.modelbrid... | aepsych-main | aepsych/generators/completion_criterion/min_total_outcome_occurrences.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
from typing import Any, Dict
from aepsych.config import Config, ConfigurableMixin
from ax.core.base_... | aepsych-main | aepsych/generators/completion_criterion/min_total_tells.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import sys
from ..config import Config
from .factory import (
default_mean_covar_factory,
mo... | aepsych-main | aepsych/factory/__init__.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
from configparser import NoOptionError
from typing import Optional, Tuple
import gpytorch
import tor... | aepsych-main | aepsych/factory/factory.py |
#!/usr/bin/env python3
# coding: utf-8
# ### Semi-parametric psychophysical model tutorial
#
# This tutorial will demonstrate how to fit the semiparametric psychophysical models described in [Keeley et al., 2023](https://arxiv.org/abs/2302.01187).
#
# The semi-parametric model uses a conventional parametric form fo... | aepsych-main | website/static/files/Semi_P_tutorial.py |
#!/usr/bin/env python3
# coding: utf-8
# # Data Collection and Analysis Using AEPsych
#
# This tutorial serves as a complete example on how to collect and analyze data from perceptual experiments using AEPsych. For more information on AEPsych, refer to the documentation in the [GitHub repository](https://github.com/f... | aepsych-main | website/static/files/data_collection_analysis_tutorial.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import unittest
from copy import deepcopy
import numpy as np
import torch
from aepsych.config import... | aepsych-main | tests/test_utils.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import unittest
from unittest.mock import MagicMock
import numpy as np
import torch
from aepsych.acq... | aepsych-main | tests/test_strategy.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import unittest
import torch
from aepsych.benchmark.test_functions import make_songetal_testfun
from... | aepsych-main | tests/test_bench_testfuns.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import json
import os
import shutil
import unittest
import uuid
from configparser import DuplicateOpt... | aepsych-main | tests/test_db.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import unittest
from itertools import product
import numpy as np
import torch
from aepsych.acquisiti... | aepsych-main | tests/test_lookahead.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
| aepsych-main | tests/__init__.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import unittest
import gpytorch
import numpy as np
from aepsych.config import Config
from aepsych.fa... | aepsych-main | tests/test_mean_covar_factories.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import numpy as np
from scipy.stats import norm
def f_1d(x, mu=0):
"""
latent is just a gau... | aepsych-main | tests/common.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import os
import random
import time
import unittest
import numpy as np
import torch
from aepsych.ben... | aepsych-main | tests/test_benchmark.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import json
import os
import unittest
import uuid
import torch
from aepsych.acquisition import EAVC,... | aepsych-main | tests/test_config.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import unittest
import torch
from aepsych.likelihoods import OrdinalLikelihood
from gpytorch.test.ba... | aepsych-main | tests/test_likelihoods.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import os
import unittest
import uuid
import torch
from aepsych.server import AEPsychServer
from ae... | aepsych-main | tests/test_multioutcome.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import math
import os
import unittest
import uuid
import numpy as np
import torch
from aepsych.conf... | aepsych-main | tests/test_ax_integration.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
"""
These tests check that the server can handle different experiments
(multi/single stimuli, multi/s... | aepsych-main | tests/test_integration.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
| aepsych-main | tests/acquisition/__init__.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import unittest
import numpy as np
import torch
from aepsych.acquisition.lse import MCLevelSetEstima... | aepsych-main | tests/acquisition/test_lse.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import unittest
import numpy as np
import torch
from aepsych.acquisition.mutual_information import (... | aepsych-main | tests/acquisition/test_mi.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import unittest
from itertools import product
import numpy as np
import torch
from aepsych.acquisiti... | aepsych-main | tests/acquisition/test_objective.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import torch
from aepsych.acquisition.monotonic_rejection import MonotonicMCLSE
from aepsych.acquisit... | aepsych-main | tests/acquisition/test_monotonic.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import torch
from aepsych.acquisition.rejection_sampler import RejectionSampler
from aepsych.models.d... | aepsych-main | tests/acquisition/test_rejection_sampler.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
| aepsych-main | tests/server/__init__.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import json
import logging
import select
import unittest
import uuid
from unittest.mock import MagicM... | aepsych-main | tests/server/test_server.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import unittest
from aepsych.config import Config
from ..test_server import BaseServerTestCase, dum... | aepsych-main | tests/server/message_handlers/test_handle_get_config.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
| aepsych-main | tests/server/message_handlers/__init__.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import unittest
from unittest.mock import MagicMock
from ..test_server import BaseServerTestCase
c... | aepsych-main | tests/server/message_handlers/test_handle_exit.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import unittest
from ..test_server import BaseServerTestCase, dummy_config
class QueryHandlerTestC... | aepsych-main | tests/server/message_handlers/test_query_handlers.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import unittest
from ..test_server import BaseServerTestCase, dummy_config
class StratCanModelTest... | aepsych-main | tests/server/message_handlers/test_can_model.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import unittest
from ..test_server import BaseServerTestCase, dummy_config
class ResumeTestCase(Ba... | aepsych-main | tests/server/message_handlers/test_handle_finish_strategy.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import unittest
from unittest.mock import MagicMock
from ..test_server import BaseServerTestCase, du... | aepsych-main | tests/server/message_handlers/test_tell_handlers.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import unittest
import numpy as np
import torch
from sklearn.datasets import make_classification
fr... | aepsych-main | tests/models/test_utils.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import os
import unittest
import torch
# run on single threads to keep us from deadlocking weirdly ... | aepsych-main | tests/models/test_monotonic_projection_gp.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import os
import unittest
import numpy as np
import torch
from aepsych.generators import SobolGenera... | aepsych-main | tests/models/test_multitask_regression.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import os
import unittest
import uuid
import numpy as np
import numpy.testing as npt
import torch
fr... | aepsych-main | tests/models/test_gp_regression.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
| aepsych-main | tests/models/__init__.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import unittest
import numpy as np
import numpy.testing as npt
import torch
from aepsych.acquisitio... | aepsych-main | tests/models/test_semi_p.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import torch
from aepsych.kernels.rbf_partial_grad import RBFKernelPartialObsGrad
from aepsych.means.... | aepsych-main | tests/models/test_derivative_gp.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import unittest
import numpy as np
import numpy.testing as npt
import torch
from aepsych.likelihoods... | aepsych-main | tests/models/test_variational_gp.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import logging
import unittest
import uuid
import numpy as np
import numpy.testing as npt
import tor... | aepsych-main | tests/models/test_pairwise_probit.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import os
import torch
# run on single threads to keep us from deadlocking weirdly in CI
if "CI" in... | aepsych-main | tests/models/test_monotonic_rejection_gp.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import unittest
import numpy as np
import torch
from botorch.fit import fit_gpytorch_mll
from gpytor... | aepsych-main | tests/models/test_model_query.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import os
import unittest
import torch
# run on single threads to keep us from deadlocking weirdly ... | aepsych-main | tests/models/test_gp_classification.py |
#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import time
import unittest
import numpy as np
import torch
from aepsych.acquisition import MCLevelS... | aepsych-main | tests/generators/test_optimize_acqf_generator.py |
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