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Walk an unpacked egg s contents skipping the metadata directory
def walk_egg(egg_dir): """Walk an unpacked egg's contents, skipping the metadata directory""" walker = os.walk(egg_dir) base,dirs,files = walker.next() if 'EGG-INFO' in dirs: dirs.remove('EGG-INFO') yield base,dirs,files for bdf in walker: yield bdf
Check whether module possibly uses unsafe - for - zipfile stuff
def scan_module(egg_dir, base, name, stubs): """Check whether module possibly uses unsafe-for-zipfile stuff""" filename = os.path.join(base,name) if filename[:-1] in stubs: return True # Extension module pkg = base[len(egg_dir)+1:].replace(os.sep,'.') module = pkg+(pkg and '.' or '')+os.path.splitext(name)[0] if sys.version_info < (3, 3): skip = 8 # skip magic & date else: skip = 12 # skip magic & date & file size f = open(filename,'rb'); f.read(skip) code = marshal.load(f); f.close() safe = True symbols = dict.fromkeys(iter_symbols(code)) for bad in ['__file__', '__path__']: if bad in symbols: log.warn("%s: module references %s", module, bad) safe = False if 'inspect' in symbols: for bad in [ 'getsource', 'getabsfile', 'getsourcefile', 'getfile' 'getsourcelines', 'findsource', 'getcomments', 'getframeinfo', 'getinnerframes', 'getouterframes', 'stack', 'trace' ]: if bad in symbols: log.warn("%s: module MAY be using inspect.%s", module, bad) safe = False if '__name__' in symbols and '__main__' in symbols and '.' not in module: if sys.version[:3]=="2.4": # -m works w/zipfiles in 2.5 log.warn("%s: top-level module may be 'python -m' script", module) safe = False return safe
Create missing package __init__ files
def make_init_files(self): """Create missing package __init__ files""" init_files = [] for base,dirs,files in walk_egg(self.bdist_dir): if base==self.bdist_dir: # don't put an __init__ in the root continue for name in files: if name.endswith('.py'): if '__init__.py' not in files: pkg = base[len(self.bdist_dir)+1:].replace(os.sep,'.') if self.distribution.has_contents_for(pkg): log.warn("Creating missing __init__.py for %s",pkg) filename = os.path.join(base,'__init__.py') if not self.dry_run: f = open(filename,'w'); f.write(NS_PKG_STUB) f.close() init_files.append(filename) break else: # not a package, don't traverse to subdirectories dirs[:] = [] return init_files
Create and run the IPython controller
def launch_new_instance(): """Create and run the IPython controller""" if sys.platform == 'win32': # make sure we don't get called from a multiprocessing subprocess # this can result in infinite Controllers being started on Windows # which doesn't have a proper fork, so multiprocessing is wonky # this only comes up when IPython has been installed using vanilla # setuptools, and *not* distribute. import multiprocessing p = multiprocessing.current_process() # the main process has name 'MainProcess' # subprocesses will have names like 'Process-1' if p.name != 'MainProcess': # we are a subprocess, don't start another Controller! return app = IPControllerApp.instance() app.initialize() app.start()
save a connection dict to json file.
def save_connection_dict(self, fname, cdict): """save a connection dict to json file.""" c = self.config url = cdict['url'] location = cdict['location'] if not location: try: proto,ip,port = split_url(url) except AssertionError: pass else: try: location = socket.gethostbyname_ex(socket.gethostname())[2][-1] except (socket.gaierror, IndexError): self.log.warn("Could not identify this machine's IP, assuming 127.0.0.1." " You may need to specify '--location=<external_ip_address>' to help" " IPython decide when to connect via loopback.") location = '127.0.0.1' cdict['location'] = location fname = os.path.join(self.profile_dir.security_dir, fname) self.log.info("writing connection info to %s", fname) with open(fname, 'w') as f: f.write(json.dumps(cdict, indent=2)) os.chmod(fname, stat.S_IRUSR|stat.S_IWUSR)
load config from existing json connector files.
def load_config_from_json(self): """load config from existing json connector files.""" c = self.config self.log.debug("loading config from JSON") # load from engine config fname = os.path.join(self.profile_dir.security_dir, self.engine_json_file) self.log.info("loading connection info from %s", fname) with open(fname) as f: cfg = json.loads(f.read()) key = cfg['exec_key'] # json gives unicode, Session.key wants bytes c.Session.key = key.encode('ascii') xport,addr = cfg['url'].split('://') c.HubFactory.engine_transport = xport ip,ports = addr.split(':') c.HubFactory.engine_ip = ip c.HubFactory.regport = int(ports) self.location = cfg['location'] if not self.engine_ssh_server: self.engine_ssh_server = cfg['ssh'] # load client config fname = os.path.join(self.profile_dir.security_dir, self.client_json_file) self.log.info("loading connection info from %s", fname) with open(fname) as f: cfg = json.loads(f.read()) assert key == cfg['exec_key'], "exec_key mismatch between engine and client keys" xport,addr = cfg['url'].split('://') c.HubFactory.client_transport = xport ip,ports = addr.split(':') c.HubFactory.client_ip = ip if not self.ssh_server: self.ssh_server = cfg['ssh'] assert int(ports) == c.HubFactory.regport, "regport mismatch"
secondary config loading from JSON and setting defaults
def load_secondary_config(self): """secondary config, loading from JSON and setting defaults""" if self.reuse_files: try: self.load_config_from_json() except (AssertionError,IOError) as e: self.log.error("Could not load config from JSON: %s" % e) else: # successfully loaded config from JSON, and reuse=True # no need to wite back the same file self.write_connection_files = False # switch Session.key default to secure default_secure(self.config) self.log.debug("Config changed") self.log.debug(repr(self.config))
single decorator for adding script args
def script_args(f): """single decorator for adding script args""" args = [ magic_arguments.argument( '--out', type=str, help="""The variable in which to store stdout from the script. If the script is backgrounded, this will be the stdout *pipe*, instead of the stderr text itself. """ ), magic_arguments.argument( '--err', type=str, help="""The variable in which to store stderr from the script. If the script is backgrounded, this will be the stderr *pipe*, instead of the stderr text itself. """ ), magic_arguments.argument( '--bg', action="store_true", help="""Whether to run the script in the background. If given, the only way to see the output of the command is with --out/err. """ ), magic_arguments.argument( '--proc', type=str, help="""The variable in which to store Popen instance. This is used only when --bg option is given. """ ), ] for arg in args: f = arg(f) return f
decorator for adding block/ targets args for execution applied to %pxconfig and %%px
def exec_args(f): """decorator for adding block/targets args for execution applied to %pxconfig and %%px """ args = [ magic_arguments.argument('-b', '--block', action="store_const", const=True, dest='block', help="use blocking (sync) execution", ), magic_arguments.argument('-a', '--noblock', action="store_const", const=False, dest='block', help="use non-blocking (async) execution", ), magic_arguments.argument('-t', '--targets', type=str, help="specify the targets on which to execute", ), magic_arguments.argument('--verbose', action="store_const", const=True, dest="set_verbose", help="print a message at each execution", ), magic_arguments.argument('--no-verbose', action="store_const", const=False, dest="set_verbose", help="don't print any messages", ), ] for a in args: f = a(f) return f
decorator for output - formatting args applied to %pxresult and %%px
def output_args(f): """decorator for output-formatting args applied to %pxresult and %%px """ args = [ magic_arguments.argument('-r', action="store_const", dest='groupby', const='order', help="collate outputs in order (same as group-outputs=order)" ), magic_arguments.argument('-e', action="store_const", dest='groupby', const='engine', help="group outputs by engine (same as group-outputs=engine)" ), magic_arguments.argument('--group-outputs', dest='groupby', type=str, choices=['engine', 'order', 'type'], default='type', help="""Group the outputs in a particular way. Choices are: type: group outputs of all engines by type (stdout, stderr, displaypub, etc.). engine: display all output for each engine together. order: like type, but individual displaypub output from each engine is collated. For example, if multiple plots are generated by each engine, the first figure of each engine will be displayed, then the second of each, etc. """ ), magic_arguments.argument('-o', '--out', dest='save_name', type=str, help="""store the AsyncResult object for this computation in the global namespace under this name. """ ), ] for a in args: f = a(f) return f
configure default targets/ blocking for %px magics
def pxconfig(self, line): """configure default targets/blocking for %px magics""" args = magic_arguments.parse_argstring(self.pxconfig, line) if args.targets: self.view.targets = self._eval_target_str(args.targets) if args.block is not None: self.view.block = args.block if args.set_verbose is not None: self.verbose = args.set_verbose
Print the result of the last asynchronous %px command. This lets you recall the results of %px computations after asynchronous submission ( block = False ).
def result(self, line=''): """Print the result of the last asynchronous %px command. This lets you recall the results of %px computations after asynchronous submission (block=False). Examples -------- :: In [23]: %px os.getpid() Async parallel execution on engine(s): all In [24]: %pxresult Out[8:10]: 60920 Out[9:10]: 60921 Out[10:10]: 60922 Out[11:10]: 60923 """ args = magic_arguments.parse_argstring(self.result, line) if self.last_result is None: raise UsageError(NO_LAST_RESULT) self.last_result.get() self.last_result.display_outputs(groupby=args.groupby)
implementation used by %px and %%parallel
def parallel_execute(self, cell, block=None, groupby='type', save_name=None): """implementation used by %px and %%parallel""" # defaults: block = self.view.block if block is None else block base = "Parallel" if block else "Async parallel" targets = self.view.targets if isinstance(targets, list) and len(targets) > 10: str_targets = str(targets[:4])[:-1] + ', ..., ' + str(targets[-4:])[1:] else: str_targets = str(targets) if self.verbose: print base + " execution on engine(s): %s" % str_targets result = self.view.execute(cell, silent=False, block=False) self.last_result = result if save_name: self.shell.user_ns[save_name] = result if block: result.get() result.display_outputs(groupby) else: # return AsyncResult only on non-blocking submission return result
Executes the cell in parallel. Examples --------::
def cell_px(self, line='', cell=None): """Executes the cell in parallel. Examples -------- :: In [24]: %%px --noblock ....: a = os.getpid() Async parallel execution on engine(s): all In [25]: %%px ....: print a [stdout:0] 1234 [stdout:1] 1235 [stdout:2] 1236 [stdout:3] 1237 """ args = magic_arguments.parse_argstring(self.cell_px, line) if args.targets: save_targets = self.view.targets self.view.targets = self._eval_target_str(args.targets) try: return self.parallel_execute(cell, block=args.block, groupby=args.groupby, save_name=args.save_name, ) finally: if args.targets: self.view.targets = save_targets
Enable %autopx mode by saving the original run_cell and installing pxrun_cell.
def _enable_autopx(self): """Enable %autopx mode by saving the original run_cell and installing pxrun_cell. """ # override run_cell self._original_run_cell = self.shell.run_cell self.shell.run_cell = self.pxrun_cell self._autopx = True print "%autopx enabled"
Disable %autopx by restoring the original InteractiveShell. run_cell.
def _disable_autopx(self): """Disable %autopx by restoring the original InteractiveShell.run_cell. """ if self._autopx: self.shell.run_cell = self._original_run_cell self._autopx = False print "%autopx disabled"
drop - in replacement for InteractiveShell. run_cell.
def pxrun_cell(self, raw_cell, store_history=False, silent=False): """drop-in replacement for InteractiveShell.run_cell. This executes code remotely, instead of in the local namespace. See InteractiveShell.run_cell for details. """ if (not raw_cell) or raw_cell.isspace(): return ipself = self.shell with ipself.builtin_trap: cell = ipself.prefilter_manager.prefilter_lines(raw_cell) # Store raw and processed history if store_history: ipself.history_manager.store_inputs(ipself.execution_count, cell, raw_cell) # ipself.logger.log(cell, raw_cell) cell_name = ipself.compile.cache(cell, ipself.execution_count) try: ast.parse(cell, filename=cell_name) except (OverflowError, SyntaxError, ValueError, TypeError, MemoryError): # Case 1 ipself.showsyntaxerror() ipself.execution_count += 1 return None except NameError: # ignore name errors, because we don't know the remote keys pass if store_history: # Write output to the database. Does nothing unless # history output logging is enabled. ipself.history_manager.store_output(ipself.execution_count) # Each cell is a *single* input, regardless of how many lines it has ipself.execution_count += 1 if re.search(r'get_ipython\(\)\.magic\(u?["\']%?autopx', cell): self._disable_autopx() return False else: try: result = self.view.execute(cell, silent=False, block=False) except: ipself.showtraceback() return True else: if self.view.block: try: result.get() except: self.shell.showtraceback() return True else: with ipself.builtin_trap: result.display_outputs() return False
Internal CLOCK_CHANNEL consumer to process task runs
def run_heartbeat(message): """Internal ``CLOCK_CHANNEL`` consumer to process task runs""" then = arrow.get(message['time']) now = arrow.get() if (now - then) > timezone.timedelta(seconds=(TICK_FREQ+1)): pass # discard old ticks else: Task.run_tasks()
Internal RUN_TASK consumer to run the task s callable
def run_task(message): """Internal ``RUN_TASK`` consumer to run the task's callable""" task = Task.objects.get(pk=message['id']) if task.allow_overlap: task.run(message) else: if not task.running: task.running = True task.save() try: task.run(message) finally: task.running = False task.save()
Internal KILL_TASK consumer to remove retired tasks
def remove_task(message): """Internal ``KILL_TASK`` consumer to remove retired tasks""" task = Task.objects.get(pk=message['id']) task.delete()
Patch the protocol s makeConnection and connectionLost methods to make the protocol and its transport behave more like what Agent expects.
def patch_protocol_for_agent(protocol): """ Patch the protocol's makeConnection and connectionLost methods to make the protocol and its transport behave more like what `Agent` expects. While `Agent` is the driving force behind this, other clients and servers will no doubt have similar requirements. """ old_makeConnection = protocol.makeConnection old_connectionLost = protocol.connectionLost def new_makeConnection(transport): patch_transport_fake_push_producer(transport) patch_transport_abortConnection(transport, protocol) return old_makeConnection(transport) def new_connectionLost(reason): # Replace ConnectionDone with ConnectionAborted if we aborted. if protocol._fake_connection_aborted and reason.check(ConnectionDone): reason = Failure(ConnectionAborted()) return old_connectionLost(reason) protocol.makeConnection = new_makeConnection protocol.connectionLost = new_connectionLost protocol._fake_connection_aborted = False
Patch a method onto an object if it isn t already there.
def patch_if_missing(obj, name, method): """ Patch a method onto an object if it isn't already there. """ setattr(obj, name, getattr(obj, name, method))
Patch the three methods belonging to IPushProducer onto the transport if it doesn t already have them. ( Agent assumes its transport has these. )
def patch_transport_fake_push_producer(transport): """ Patch the three methods belonging to IPushProducer onto the transport if it doesn't already have them. (`Agent` assumes its transport has these.) """ patch_if_missing(transport, 'pauseProducing', lambda: None) patch_if_missing(transport, 'resumeProducing', lambda: None) patch_if_missing(transport, 'stopProducing', transport.loseConnection)
Patch abortConnection () onto the transport if it doesn t already have it. ( Agent assumes its transport has this. )
def patch_transport_abortConnection(transport, protocol): """ Patch abortConnection() onto the transport if it doesn't already have it. (`Agent` assumes its transport has this.) """ def abortConnection(): protocol._fake_connection_aborted = True transport.loseConnection() patch_if_missing(transport, 'abortConnection', abortConnection)
Accept a pending connection.
def accept_connection(self): """ Accept a pending connection. """ assert self.pending, "Connection is not pending." self.server_protocol = self.server.server_factory.buildProtocol(None) self._accept_d.callback( FakeServerProtocolWrapper(self, self.server_protocol)) return self.await_connected()
Reject a pending connection.
def reject_connection(self, reason=None): """ Reject a pending connection. """ assert self.pending, "Connection is not pending." if reason is None: reason = ConnectionRefusedError() self._accept_d.errback(reason)
Returns an IAgent that makes requests to this fake server.
def get_agent(self, reactor=None, contextFactory=None): """ Returns an IAgent that makes requests to this fake server. """ return ProxyAgentWithContext( self.endpoint, reactor=reactor, contextFactory=contextFactory)
Calls pre and post save hooks.
def form_valid(self, form): """ Calls pre and post save hooks. """ self.object = form.save(commit=False) # Invoke pre_save hook, and allow it to abort the saving # process and do a redirect. response = self.pre_save(self.object) if response: return response self.object.save() form.save_m2m() self.post_save(self.object) return HttpResponseRedirect(self.get_success_url())
Calls pre and post delete hooks for DelteViews.
def delete(self, request, *args, **kwargs): """ Calls pre and post delete hooks for DelteViews. """ self.object = self.get_object() success_url = self.get_success_url() self.pre_delete(self.object) self.object.delete() self.post_delete(self.object) return HttpResponseRedirect(success_url)
Supply user object as initial data for the specified user_field ( s ).
def get_initial(self): """ Supply user object as initial data for the specified user_field(s). """ data = super(UserViewMixin, self).get_initial() for k in self.user_field: data[k] = self.request.user return data
Use SaveHookMixin pre_save to set the user.
def pre_save(self, instance): super(UserViewMixin, self).pre_save(instance) """ Use SaveHookMixin pre_save to set the user. """ if self.request.user.is_authenticated(): for field in self.user_field: setattr(instance, field, self.request.user)
Writes a report summarizing coverage statistics per module.
def report(self, morfs, outfile=None): """Writes a report summarizing coverage statistics per module. `outfile` is a file object to write the summary to. """ self.find_code_units(morfs) # Prepare the formatting strings max_name = max([len(cu.name) for cu in self.code_units] + [5]) fmt_name = "%%- %ds " % max_name fmt_err = "%s %s: %s\n" header = (fmt_name % "Name") + " Stmts Miss" fmt_coverage = fmt_name + "%6d %6d" if self.branches: header += " Branch BrMiss" fmt_coverage += " %6d %6d" width100 = Numbers.pc_str_width() header += "%*s" % (width100+4, "Cover") fmt_coverage += "%%%ds%%%%" % (width100+3,) if self.config.show_missing: header += " Missing" fmt_coverage += " %s" rule = "-" * len(header) + "\n" header += "\n" fmt_coverage += "\n" if not outfile: outfile = sys.stdout # Write the header outfile.write(header) outfile.write(rule) total = Numbers() for cu in self.code_units: try: analysis = self.coverage._analyze(cu) nums = analysis.numbers args = (cu.name, nums.n_statements, nums.n_missing) if self.branches: args += (nums.n_branches, nums.n_missing_branches) args += (nums.pc_covered_str,) if self.config.show_missing: args += (analysis.missing_formatted(),) outfile.write(fmt_coverage % args) total += nums except KeyboardInterrupt: # pragma: not covered raise except: report_it = not self.config.ignore_errors if report_it: typ, msg = sys.exc_info()[:2] if typ is NotPython and not cu.should_be_python(): report_it = False if report_it: outfile.write(fmt_err % (cu.name, typ.__name__, msg)) if total.n_files > 1: outfile.write(rule) args = ("TOTAL", total.n_statements, total.n_missing) if self.branches: args += (total.n_branches, total.n_missing_branches) args += (total.pc_covered_str,) if self.config.show_missing: args += ("",) outfile.write(fmt_coverage % args) return total.pc_covered
Official way to get the extension of compiled files (. pyc or. pyo )
def _get_compiled_ext(): """Official way to get the extension of compiled files (.pyc or .pyo)""" for ext, mode, typ in imp.get_suffixes(): if typ == imp.PY_COMPILED: return ext
Replace stuff in the __dict__ of a class and upgrade method code objects
def update_class(old, new): """Replace stuff in the __dict__ of a class, and upgrade method code objects""" for key in old.__dict__.keys(): old_obj = getattr(old, key) try: new_obj = getattr(new, key) except AttributeError: # obsolete attribute: remove it try: delattr(old, key) except (AttributeError, TypeError): pass continue if update_generic(old_obj, new_obj): continue try: setattr(old, key, getattr(new, key)) except (AttributeError, TypeError): pass
Check whether some modules need to be reloaded.
def check(self, check_all=False): """Check whether some modules need to be reloaded.""" if not self.enabled and not check_all: return if check_all or self.check_all: modules = sys.modules.keys() else: modules = self.modules.keys() for modname in modules: m = sys.modules.get(modname, None) if modname in self.skip_modules: continue if not hasattr(m, '__file__'): continue if m.__name__ == '__main__': # we cannot reload(__main__) continue filename = m.__file__ path, ext = os.path.splitext(filename) if ext.lower() == '.py': ext = PY_COMPILED_EXT pyc_filename = pyfile.cache_from_source(filename) py_filename = filename else: pyc_filename = filename try: py_filename = pyfile.source_from_cache(filename) except ValueError: continue try: pymtime = os.stat(py_filename).st_mtime if pymtime <= os.stat(pyc_filename).st_mtime: continue if self.failed.get(py_filename, None) == pymtime: continue except OSError: continue try: superreload(m, reload, self.old_objects) if py_filename in self.failed: del self.failed[py_filename] except: print >> sys.stderr, "[autoreload of %s failed: %s]" % ( modname, traceback.format_exc(1)) self.failed[py_filename] = pymtime
Open the default editor at the given filename and linenumber.
def editor(self, filename, linenum=None, wait=True): """Open the default editor at the given filename and linenumber. This is IPython's default editor hook, you can use it as an example to write your own modified one. To set your own editor function as the new editor hook, call ip.set_hook('editor',yourfunc).""" # IPython configures a default editor at startup by reading $EDITOR from # the environment, and falling back on vi (unix) or notepad (win32). editor = self.editor # marker for at which line to open the file (for existing objects) if linenum is None or editor=='notepad': linemark = '' else: linemark = '+%d' % int(linenum) # Enclose in quotes if necessary and legal if ' ' in editor and os.path.isfile(editor) and editor[0] != '"': editor = '"%s"' % editor # Call the actual editor proc = subprocess.Popen('%s %s %s' % (editor, linemark, filename), shell=True) if wait and proc.wait() != 0: raise TryNext()
Open the editor at the given filename linenumber column and show an error message. This is used for correcting syntax errors. The current implementation only has special support for the VIM editor and falls back on the editor hook if VIM is not used.
def fix_error_editor(self,filename,linenum,column,msg): """Open the editor at the given filename, linenumber, column and show an error message. This is used for correcting syntax errors. The current implementation only has special support for the VIM editor, and falls back on the 'editor' hook if VIM is not used. Call ip.set_hook('fix_error_editor',youfunc) to use your own function, """ def vim_quickfix_file(): t = tempfile.NamedTemporaryFile() t.write('%s:%d:%d:%s\n' % (filename,linenum,column,msg)) t.flush() return t if os.path.basename(self.editor) != 'vim': self.hooks.editor(filename,linenum) return t = vim_quickfix_file() try: if os.system('vim --cmd "set errorformat=%f:%l:%c:%m" -q ' + t.name): raise TryNext() finally: t.close()
Get text from the clipboard.
def clipboard_get(self): """ Get text from the clipboard. """ from IPython.lib.clipboard import ( osx_clipboard_get, tkinter_clipboard_get, win32_clipboard_get ) if sys.platform == 'win32': chain = [win32_clipboard_get, tkinter_clipboard_get] elif sys.platform == 'darwin': chain = [osx_clipboard_get, tkinter_clipboard_get] else: chain = [tkinter_clipboard_get] dispatcher = CommandChainDispatcher() for func in chain: dispatcher.add(func) text = dispatcher() return text
Add a func to the cmd chain with given priority
def add(self, func, priority=0): """ Add a func to the cmd chain with given priority """ self.chain.append((priority, func)) self.chain.sort(key=lambda x: x[0])
Try to create a Distribution path_or_module. o path_or_module may be a module object.
def get_metadata(path_or_module, metadata_version=None): """ Try to create a Distribution 'path_or_module'. o 'path_or_module' may be a module object. o If a string, 'path_or_module' may point to an sdist file, a bdist file, an installed package, or a working checkout (if it contains PKG-INFO). o Return None if 'path_or_module' can't be parsed. """ if isinstance(path_or_module, ModuleType): try: return Installed(path_or_module, metadata_version) except (ValueError, IOError): #pragma NO COVER pass try: __import__(path_or_module) except ImportError: pass else: try: return Installed(path_or_module, metadata_version) except (ValueError, IOError): #pragma NO COVER pass if os.path.isfile(path_or_module): try: return SDist(path_or_module, metadata_version) except (ValueError, IOError): pass try: return BDist(path_or_module, metadata_version) except (ValueError, IOError): #pragma NO COVER pass try: return Wheel(path_or_module, metadata_version) except (ValueError, IOError): #pragma NO COVER pass if os.path.isdir(path_or_module): try: return Develop(path_or_module, metadata_version) except (ValueError, IOError): #pragma NO COVER pass
Configure which kinds of exceptions trigger plugin.
def configure(self, options, conf): """Configure which kinds of exceptions trigger plugin. """ self.conf = conf self.enabled = options.debugErrors or options.debugFailures self.enabled_for_errors = options.debugErrors self.enabled_for_failures = options.debugFailures
Given a string representing an email address returns a mailto link with rot13 JavaScript obfuscation.
def obfuscate(email, linktext=None, autoescape=None): """ Given a string representing an email address, returns a mailto link with rot13 JavaScript obfuscation. Accepts an optional argument to use as the link text; otherwise uses the email address itself. """ if autoescape: esc = conditional_escape else: esc = lambda x: x email = re.sub('@', '\\\\100', re.sub('\.', '\\\\056', esc(email))).encode('rot13') if linktext: linktext = esc(linktext).encode('rot13') else: linktext = email rotten_link = """<script type="text/javascript">document.write \ ("<n uers=\\\"znvygb:%s\\\">%s<\\057n>".replace(/[a-zA-Z]/g, \ function(c){return String.fromCharCode((c<="Z"?90:122)>=\ (c=c.charCodeAt(0)+13)?c:c-26);}));</script>""" % (email, linktext) return mark_safe(rotten_link)
given an number this fuction rounds the number as the following examples: 87 - > 87 100 - > 100 + 188 - > 100 + 999 - > 900 + 1001 - > 1000 +... etc
def roundplus(number): """ given an number, this fuction rounds the number as the following examples: 87 -> 87, 100 -> 100+, 188 -> 100+, 999 -> 900+, 1001 -> 1000+, ...etc """ num = str(number) if not num.isdigit(): return num num = str(number) digits = len(num) rounded = '100+' if digits < 3: rounded = num elif digits == 3: rounded = num[0] + '00+' elif digits == 4: rounded = num[0] + 'K+' elif digits == 5: rounded = num[:1] + 'K+' else: rounded = '100K+' return rounded
Import and return bar given the string foo. bar.
def import_item(name): """Import and return bar given the string foo.bar.""" package = '.'.join(name.split('.')[0:-1]) obj = name.split('.')[-1] # Note: the original code for this was the following. We've left it # visible for now in case the new implementation shows any problems down # the road, to make it easier on anyone looking for a problem. This code # should be removed once we're comfortable we didn't break anything. ## execString = 'from %s import %s' % (package, obj) ## try: ## exec execString ## except SyntaxError: ## raise ImportError("Invalid class specification: %s" % name) ## exec 'temp = %s' % obj ## return temp if package: module = __import__(package,fromlist=[obj]) try: pak = module.__dict__[obj] except KeyError: raise ImportError('No module named %s' % obj) return pak else: return __import__(obj)
Attempt to make an ssh connection without a password. This is mainly used for requiring password input only once when many tunnels may be connected to the same server.
def try_passwordless_ssh(server, keyfile, paramiko=None): """Attempt to make an ssh connection without a password. This is mainly used for requiring password input only once when many tunnels may be connected to the same server. If paramiko is None, the default for the platform is chosen. """ if paramiko is None: paramiko = sys.platform == 'win32' if not paramiko: f = _try_passwordless_openssh else: f = _try_passwordless_paramiko return f(server, keyfile)
Try passwordless login with shell ssh command.
def _try_passwordless_openssh(server, keyfile): """Try passwordless login with shell ssh command.""" if pexpect is None: raise ImportError("pexpect unavailable, use paramiko") cmd = 'ssh -f '+ server if keyfile: cmd += ' -i ' + keyfile cmd += ' exit' p = pexpect.spawn(cmd) while True: try: p.expect('[Pp]assword:', timeout=.1) except pexpect.TIMEOUT: continue except pexpect.EOF: return True else: return False
Try passwordless login with paramiko.
def _try_passwordless_paramiko(server, keyfile): """Try passwordless login with paramiko.""" if paramiko is None: msg = "Paramiko unavaliable, " if sys.platform == 'win32': msg += "Paramiko is required for ssh tunneled connections on Windows." else: msg += "use OpenSSH." raise ImportError(msg) username, server, port = _split_server(server) client = paramiko.SSHClient() client.load_system_host_keys() client.set_missing_host_key_policy(paramiko.WarningPolicy()) try: client.connect(server, port, username=username, key_filename=keyfile, look_for_keys=True) except paramiko.AuthenticationException: return False else: client.close() return True
Connect a socket to an address via an ssh tunnel.
def tunnel_connection(socket, addr, server, keyfile=None, password=None, paramiko=None, timeout=60): """Connect a socket to an address via an ssh tunnel. This is a wrapper for socket.connect(addr), when addr is not accessible from the local machine. It simply creates an ssh tunnel using the remaining args, and calls socket.connect('tcp://localhost:lport') where lport is the randomly selected local port of the tunnel. """ new_url, tunnel = open_tunnel(addr, server, keyfile=keyfile, password=password, paramiko=paramiko, timeout=timeout) socket.connect(new_url) return tunnel
Open a tunneled connection from a 0MQ url.
def open_tunnel(addr, server, keyfile=None, password=None, paramiko=None, timeout=60): """Open a tunneled connection from a 0MQ url. For use inside tunnel_connection. Returns ------- (url, tunnel): The 0MQ url that has been forwarded, and the tunnel object """ lport = select_random_ports(1)[0] transport, addr = addr.split('://') ip,rport = addr.split(':') rport = int(rport) if paramiko is None: paramiko = sys.platform == 'win32' if paramiko: tunnelf = paramiko_tunnel else: tunnelf = openssh_tunnel tunnel = tunnelf(lport, rport, server, remoteip=ip, keyfile=keyfile, password=password, timeout=timeout) return 'tcp://127.0.0.1:%i'%lport, tunnel
Create an ssh tunnel using command - line ssh that connects port lport on this machine to localhost: rport on server. The tunnel will automatically close when not in use remaining open for a minimum of timeout seconds for an initial connection.
def openssh_tunnel(lport, rport, server, remoteip='127.0.0.1', keyfile=None, password=None, timeout=60): """Create an ssh tunnel using command-line ssh that connects port lport on this machine to localhost:rport on server. The tunnel will automatically close when not in use, remaining open for a minimum of timeout seconds for an initial connection. This creates a tunnel redirecting `localhost:lport` to `remoteip:rport`, as seen from `server`. keyfile and password may be specified, but ssh config is checked for defaults. Parameters ---------- lport : int local port for connecting to the tunnel from this machine. rport : int port on the remote machine to connect to. server : str The ssh server to connect to. The full ssh server string will be parsed. user@server:port remoteip : str [Default: 127.0.0.1] The remote ip, specifying the destination of the tunnel. Default is localhost, which means that the tunnel would redirect localhost:lport on this machine to localhost:rport on the *server*. keyfile : str; path to public key file This specifies a key to be used in ssh login, default None. Regular default ssh keys will be used without specifying this argument. password : str; Your ssh password to the ssh server. Note that if this is left None, you will be prompted for it if passwordless key based login is unavailable. timeout : int [default: 60] The time (in seconds) after which no activity will result in the tunnel closing. This prevents orphaned tunnels from running forever. """ if pexpect is None: raise ImportError("pexpect unavailable, use paramiko_tunnel") ssh="ssh " if keyfile: ssh += "-i " + keyfile if ':' in server: server, port = server.split(':') ssh += " -p %s" % port cmd = "%s -f -L 127.0.0.1:%i:%s:%i %s sleep %i" % ( ssh, lport, remoteip, rport, server, timeout) tunnel = pexpect.spawn(cmd) failed = False while True: try: tunnel.expect('[Pp]assword:', timeout=.1) except pexpect.TIMEOUT: continue except pexpect.EOF: if tunnel.exitstatus: print (tunnel.exitstatus) print (tunnel.before) print (tunnel.after) raise RuntimeError("tunnel '%s' failed to start"%(cmd)) else: return tunnel.pid else: if failed: print("Password rejected, try again") password=None if password is None: password = getpass("%s's password: "%(server)) tunnel.sendline(password) failed = True
launch a tunner with paramiko in a subprocess. This should only be used when shell ssh is unavailable ( e. g. Windows ).
def paramiko_tunnel(lport, rport, server, remoteip='127.0.0.1', keyfile=None, password=None, timeout=60): """launch a tunner with paramiko in a subprocess. This should only be used when shell ssh is unavailable (e.g. Windows). This creates a tunnel redirecting `localhost:lport` to `remoteip:rport`, as seen from `server`. If you are familiar with ssh tunnels, this creates the tunnel: ssh server -L localhost:lport:remoteip:rport keyfile and password may be specified, but ssh config is checked for defaults. Parameters ---------- lport : int local port for connecting to the tunnel from this machine. rport : int port on the remote machine to connect to. server : str The ssh server to connect to. The full ssh server string will be parsed. user@server:port remoteip : str [Default: 127.0.0.1] The remote ip, specifying the destination of the tunnel. Default is localhost, which means that the tunnel would redirect localhost:lport on this machine to localhost:rport on the *server*. keyfile : str; path to public key file This specifies a key to be used in ssh login, default None. Regular default ssh keys will be used without specifying this argument. password : str; Your ssh password to the ssh server. Note that if this is left None, you will be prompted for it if passwordless key based login is unavailable. timeout : int [default: 60] The time (in seconds) after which no activity will result in the tunnel closing. This prevents orphaned tunnels from running forever. """ if paramiko is None: raise ImportError("Paramiko not available") if password is None: if not _try_passwordless_paramiko(server, keyfile): password = getpass("%s's password: "%(server)) p = Process(target=_paramiko_tunnel, args=(lport, rport, server, remoteip), kwargs=dict(keyfile=keyfile, password=password)) p.daemon=False p.start() atexit.register(_shutdown_process, p) return p
Function for actually starting a paramiko tunnel to be passed to multiprocessing. Process ( target = this ) and not called directly.
def _paramiko_tunnel(lport, rport, server, remoteip, keyfile=None, password=None): """Function for actually starting a paramiko tunnel, to be passed to multiprocessing.Process(target=this), and not called directly. """ username, server, port = _split_server(server) client = paramiko.SSHClient() client.load_system_host_keys() client.set_missing_host_key_policy(paramiko.WarningPolicy()) try: client.connect(server, port, username=username, key_filename=keyfile, look_for_keys=True, password=password) # except paramiko.AuthenticationException: # if password is None: # password = getpass("%s@%s's password: "%(username, server)) # client.connect(server, port, username=username, password=password) # else: # raise except Exception as e: print ('*** Failed to connect to %s:%d: %r' % (server, port, e)) sys.exit(1) # print ('Now forwarding port %d to %s:%d ...' % (lport, server, rport)) try: forward_tunnel(lport, remoteip, rport, client.get_transport()) except KeyboardInterrupt: print ('SIGINT: Port forwarding stopped cleanly') sys.exit(0) except Exception as e: print ("Port forwarding stopped uncleanly: %s"%e) sys.exit(255)
Call spin () to sync state prior to calling the method.
def spin_first(f, self, *args, **kwargs): """Call spin() to sync state prior to calling the method.""" self.spin() return f(self, *args, **kwargs)
Update our engines dict and _ids from a dict of the form: { id: uuid }.
def _update_engines(self, engines): """Update our engines dict and _ids from a dict of the form: {id:uuid}.""" for k,v in engines.iteritems(): eid = int(k) self._engines[eid] = v self._ids.append(eid) self._ids = sorted(self._ids) if sorted(self._engines.keys()) != range(len(self._engines)) and \ self._task_scheme == 'pure' and self._task_socket: self._stop_scheduling_tasks()
Stop scheduling tasks because an engine has been unregistered from a pure ZMQ scheduler.
def _stop_scheduling_tasks(self): """Stop scheduling tasks because an engine has been unregistered from a pure ZMQ scheduler. """ self._task_socket.close() self._task_socket = None msg = "An engine has been unregistered, and we are using pure " +\ "ZMQ task scheduling. Task farming will be disabled." if self.outstanding: msg += " If you were running tasks when this happened, " +\ "some `outstanding` msg_ids may never resolve." warnings.warn(msg, RuntimeWarning)
Turn valid target IDs or all into two lists: ( int_ids uuids ).
def _build_targets(self, targets): """Turn valid target IDs or 'all' into two lists: (int_ids, uuids). """ if not self._ids: # flush notification socket if no engines yet, just in case if not self.ids: raise error.NoEnginesRegistered("Can't build targets without any engines") if targets is None: targets = self._ids elif isinstance(targets, basestring): if targets.lower() == 'all': targets = self._ids else: raise TypeError("%r not valid str target, must be 'all'"%(targets)) elif isinstance(targets, int): if targets < 0: targets = self.ids[targets] if targets not in self._ids: raise IndexError("No such engine: %i"%targets) targets = [targets] if isinstance(targets, slice): indices = range(len(self._ids))[targets] ids = self.ids targets = [ ids[i] for i in indices ] if not isinstance(targets, (tuple, list, xrange)): raise TypeError("targets by int/slice/collection of ints only, not %s"%(type(targets))) return [cast_bytes(self._engines[t]) for t in targets], list(targets)
setup all our socket connections to the cluster. This is called from __init__.
def _connect(self, sshserver, ssh_kwargs, timeout): """setup all our socket connections to the cluster. This is called from __init__.""" # Maybe allow reconnecting? if self._connected: return self._connected=True def connect_socket(s, url): url = util.disambiguate_url(url, self._config['location']) if self._ssh: return tunnel.tunnel_connection(s, url, sshserver, **ssh_kwargs) else: return s.connect(url) self.session.send(self._query_socket, 'connection_request') # use Poller because zmq.select has wrong units in pyzmq 2.1.7 poller = zmq.Poller() poller.register(self._query_socket, zmq.POLLIN) # poll expects milliseconds, timeout is seconds evts = poller.poll(timeout*1000) if not evts: raise error.TimeoutError("Hub connection request timed out") idents,msg = self.session.recv(self._query_socket,mode=0) if self.debug: pprint(msg) msg = Message(msg) content = msg.content self._config['registration'] = dict(content) if content.status == 'ok': ident = self.session.bsession if content.mux: self._mux_socket = self._context.socket(zmq.DEALER) self._mux_socket.setsockopt(zmq.IDENTITY, ident) connect_socket(self._mux_socket, content.mux) if content.task: self._task_scheme, task_addr = content.task self._task_socket = self._context.socket(zmq.DEALER) self._task_socket.setsockopt(zmq.IDENTITY, ident) connect_socket(self._task_socket, task_addr) if content.notification: self._notification_socket = self._context.socket(zmq.SUB) connect_socket(self._notification_socket, content.notification) self._notification_socket.setsockopt(zmq.SUBSCRIBE, b'') # if content.query: # self._query_socket = self._context.socket(zmq.DEALER) # self._query_socket.setsockopt(zmq.IDENTITY, self.session.bsession) # connect_socket(self._query_socket, content.query) if content.control: self._control_socket = self._context.socket(zmq.DEALER) self._control_socket.setsockopt(zmq.IDENTITY, ident) connect_socket(self._control_socket, content.control) if content.iopub: self._iopub_socket = self._context.socket(zmq.SUB) self._iopub_socket.setsockopt(zmq.SUBSCRIBE, b'') self._iopub_socket.setsockopt(zmq.IDENTITY, ident) connect_socket(self._iopub_socket, content.iopub) self._update_engines(dict(content.engines)) else: self._connected = False raise Exception("Failed to connect!")
unwrap exception and remap engine_id to int.
def _unwrap_exception(self, content): """unwrap exception, and remap engine_id to int.""" e = error.unwrap_exception(content) # print e.traceback if e.engine_info: e_uuid = e.engine_info['engine_uuid'] eid = self._engines[e_uuid] e.engine_info['engine_id'] = eid return e
Register a new engine and update our connection info.
def _register_engine(self, msg): """Register a new engine, and update our connection info.""" content = msg['content'] eid = content['id'] d = {eid : content['queue']} self._update_engines(d)
Unregister an engine that has died.
def _unregister_engine(self, msg): """Unregister an engine that has died.""" content = msg['content'] eid = int(content['id']) if eid in self._ids: self._ids.remove(eid) uuid = self._engines.pop(eid) self._handle_stranded_msgs(eid, uuid) if self._task_socket and self._task_scheme == 'pure': self._stop_scheduling_tasks()
Handle messages known to be on an engine when the engine unregisters.
def _handle_stranded_msgs(self, eid, uuid): """Handle messages known to be on an engine when the engine unregisters. It is possible that this will fire prematurely - that is, an engine will go down after completing a result, and the client will be notified of the unregistration and later receive the successful result. """ outstanding = self._outstanding_dict[uuid] for msg_id in list(outstanding): if msg_id in self.results: # we already continue try: raise error.EngineError("Engine %r died while running task %r"%(eid, msg_id)) except: content = error.wrap_exception() # build a fake message: parent = {} header = {} parent['msg_id'] = msg_id header['engine'] = uuid header['date'] = datetime.now() msg = dict(parent_header=parent, header=header, content=content) self._handle_apply_reply(msg)
Save the reply to an execute_request into our results.
def _handle_execute_reply(self, msg): """Save the reply to an execute_request into our results. execute messages are never actually used. apply is used instead. """ parent = msg['parent_header'] msg_id = parent['msg_id'] if msg_id not in self.outstanding: if msg_id in self.history: print ("got stale result: %s"%msg_id) else: print ("got unknown result: %s"%msg_id) else: self.outstanding.remove(msg_id) content = msg['content'] header = msg['header'] # construct metadata: md = self.metadata[msg_id] md.update(self._extract_metadata(header, parent, content)) # is this redundant? self.metadata[msg_id] = md e_outstanding = self._outstanding_dict[md['engine_uuid']] if msg_id in e_outstanding: e_outstanding.remove(msg_id) # construct result: if content['status'] == 'ok': self.results[msg_id] = ExecuteReply(msg_id, content, md) elif content['status'] == 'aborted': self.results[msg_id] = error.TaskAborted(msg_id) elif content['status'] == 'resubmitted': # TODO: handle resubmission pass else: self.results[msg_id] = self._unwrap_exception(content)
Flush notifications of engine registrations waiting in ZMQ queue.
def _flush_notifications(self): """Flush notifications of engine registrations waiting in ZMQ queue.""" idents,msg = self.session.recv(self._notification_socket, mode=zmq.NOBLOCK) while msg is not None: if self.debug: pprint(msg) msg_type = msg['header']['msg_type'] handler = self._notification_handlers.get(msg_type, None) if handler is None: raise Exception("Unhandled message type: %s"%msg.msg_type) else: handler(msg) idents,msg = self.session.recv(self._notification_socket, mode=zmq.NOBLOCK)
Flush task or queue results waiting in ZMQ queue.
def _flush_results(self, sock): """Flush task or queue results waiting in ZMQ queue.""" idents,msg = self.session.recv(sock, mode=zmq.NOBLOCK) while msg is not None: if self.debug: pprint(msg) msg_type = msg['header']['msg_type'] handler = self._queue_handlers.get(msg_type, None) if handler is None: raise Exception("Unhandled message type: %s"%msg.msg_type) else: handler(msg) idents,msg = self.session.recv(sock, mode=zmq.NOBLOCK)
Flush replies from the control channel waiting in the ZMQ queue.
def _flush_control(self, sock): """Flush replies from the control channel waiting in the ZMQ queue. Currently: ignore them.""" if self._ignored_control_replies <= 0: return idents,msg = self.session.recv(sock, mode=zmq.NOBLOCK) while msg is not None: self._ignored_control_replies -= 1 if self.debug: pprint(msg) idents,msg = self.session.recv(sock, mode=zmq.NOBLOCK)
flush ignored control replies
def _flush_ignored_control(self): """flush ignored control replies""" while self._ignored_control_replies > 0: self.session.recv(self._control_socket) self._ignored_control_replies -= 1
Flush replies from the iopub channel waiting in the ZMQ queue.
def _flush_iopub(self, sock): """Flush replies from the iopub channel waiting in the ZMQ queue. """ idents,msg = self.session.recv(sock, mode=zmq.NOBLOCK) while msg is not None: if self.debug: pprint(msg) parent = msg['parent_header'] # ignore IOPub messages with no parent. # Caused by print statements or warnings from before the first execution. if not parent: continue msg_id = parent['msg_id'] content = msg['content'] header = msg['header'] msg_type = msg['header']['msg_type'] # init metadata: md = self.metadata[msg_id] if msg_type == 'stream': name = content['name'] s = md[name] or '' md[name] = s + content['data'] elif msg_type == 'pyerr': md.update({'pyerr' : self._unwrap_exception(content)}) elif msg_type == 'pyin': md.update({'pyin' : content['code']}) elif msg_type == 'display_data': md['outputs'].append(content) elif msg_type == 'pyout': md['pyout'] = content elif msg_type == 'status': # idle message comes after all outputs if content['execution_state'] == 'idle': md['outputs_ready'] = True else: # unhandled msg_type (status, etc.) pass # reduntant? self.metadata[msg_id] = md idents,msg = self.session.recv(sock, mode=zmq.NOBLOCK)
Create a DirectView and register it with IPython magics Defines the magics %px %autopx %pxresult %%px Parameters ---------- targets: int list of ints or all The engines on which the view s magics will run suffix: str [ default: ] The suffix if any for the magics. This allows you to have multiple views associated with parallel magics at the same time. e. g. rc. activate ( targets = 0 suffix = 0 ) will give you the magics %px0 %pxresult0 etc. for running magics just on engine 0.
def activate(self, targets='all', suffix=''): """Create a DirectView and register it with IPython magics Defines the magics `%px, %autopx, %pxresult, %%px` Parameters ---------- targets: int, list of ints, or 'all' The engines on which the view's magics will run suffix: str [default: ''] The suffix, if any, for the magics. This allows you to have multiple views associated with parallel magics at the same time. e.g. ``rc.activate(targets=0, suffix='0')`` will give you the magics ``%px0``, ``%pxresult0``, etc. for running magics just on engine 0. """ view = self.direct_view(targets) view.block = True view.activate(suffix) return view
target func for use in spin_thread
def _spin_every(self, interval=1): """target func for use in spin_thread""" while True: if self._stop_spinning.is_set(): return time.sleep(interval) self.spin()
call Client. spin () in a background thread on some regular interval This helps ensure that messages don t pile up too much in the zmq queue while you are working on other things or just leaving an idle terminal. It also helps limit potential padding of the received timestamp on AsyncResult objects used for timings. Parameters ---------- interval: float optional The interval on which to spin the client in the background thread ( simply passed to time. sleep ). Notes ----- For precision timing you may want to use this method to put a bound on the jitter ( in seconds ) in received timestamps used in AsyncResult. wall_time.
def spin_thread(self, interval=1): """call Client.spin() in a background thread on some regular interval This helps ensure that messages don't pile up too much in the zmq queue while you are working on other things, or just leaving an idle terminal. It also helps limit potential padding of the `received` timestamp on AsyncResult objects, used for timings. Parameters ---------- interval : float, optional The interval on which to spin the client in the background thread (simply passed to time.sleep). Notes ----- For precision timing, you may want to use this method to put a bound on the jitter (in seconds) in `received` timestamps used in AsyncResult.wall_time. """ if self._spin_thread is not None: self.stop_spin_thread() self._stop_spinning.clear() self._spin_thread = Thread(target=self._spin_every, args=(interval,)) self._spin_thread.daemon = True self._spin_thread.start()
stop background spin_thread if any
def stop_spin_thread(self): """stop background spin_thread, if any""" if self._spin_thread is not None: self._stop_spinning.set() self._spin_thread.join() self._spin_thread = None
Flush any registration notifications and execution results waiting in the ZMQ queue.
def spin(self): """Flush any registration notifications and execution results waiting in the ZMQ queue. """ if self._notification_socket: self._flush_notifications() if self._iopub_socket: self._flush_iopub(self._iopub_socket) if self._mux_socket: self._flush_results(self._mux_socket) if self._task_socket: self._flush_results(self._task_socket) if self._control_socket: self._flush_control(self._control_socket) if self._query_socket: self._flush_ignored_hub_replies()
waits on one or more jobs for up to timeout seconds.
def wait(self, jobs=None, timeout=-1): """waits on one or more `jobs`, for up to `timeout` seconds. Parameters ---------- jobs : int, str, or list of ints and/or strs, or one or more AsyncResult objects ints are indices to self.history strs are msg_ids default: wait on all outstanding messages timeout : float a time in seconds, after which to give up. default is -1, which means no timeout Returns ------- True : when all msg_ids are done False : timeout reached, some msg_ids still outstanding """ tic = time.time() if jobs is None: theids = self.outstanding else: if isinstance(jobs, (int, basestring, AsyncResult)): jobs = [jobs] theids = set() for job in jobs: if isinstance(job, int): # index access job = self.history[job] elif isinstance(job, AsyncResult): map(theids.add, job.msg_ids) continue theids.add(job) if not theids.intersection(self.outstanding): return True self.spin() while theids.intersection(self.outstanding): if timeout >= 0 and ( time.time()-tic ) > timeout: break time.sleep(1e-3) self.spin() return len(theids.intersection(self.outstanding)) == 0
Clear the namespace in target ( s ).
def clear(self, targets=None, block=None): """Clear the namespace in target(s).""" block = self.block if block is None else block targets = self._build_targets(targets)[0] for t in targets: self.session.send(self._control_socket, 'clear_request', content={}, ident=t) error = False if block: self._flush_ignored_control() for i in range(len(targets)): idents,msg = self.session.recv(self._control_socket,0) if self.debug: pprint(msg) if msg['content']['status'] != 'ok': error = self._unwrap_exception(msg['content']) else: self._ignored_control_replies += len(targets) if error: raise error
Abort specific jobs from the execution queues of target ( s ).
def abort(self, jobs=None, targets=None, block=None): """Abort specific jobs from the execution queues of target(s). This is a mechanism to prevent jobs that have already been submitted from executing. Parameters ---------- jobs : msg_id, list of msg_ids, or AsyncResult The jobs to be aborted If unspecified/None: abort all outstanding jobs. """ block = self.block if block is None else block jobs = jobs if jobs is not None else list(self.outstanding) targets = self._build_targets(targets)[0] msg_ids = [] if isinstance(jobs, (basestring,AsyncResult)): jobs = [jobs] bad_ids = filter(lambda obj: not isinstance(obj, (basestring, AsyncResult)), jobs) if bad_ids: raise TypeError("Invalid msg_id type %r, expected str or AsyncResult"%bad_ids[0]) for j in jobs: if isinstance(j, AsyncResult): msg_ids.extend(j.msg_ids) else: msg_ids.append(j) content = dict(msg_ids=msg_ids) for t in targets: self.session.send(self._control_socket, 'abort_request', content=content, ident=t) error = False if block: self._flush_ignored_control() for i in range(len(targets)): idents,msg = self.session.recv(self._control_socket,0) if self.debug: pprint(msg) if msg['content']['status'] != 'ok': error = self._unwrap_exception(msg['content']) else: self._ignored_control_replies += len(targets) if error: raise error
Terminates one or more engine processes optionally including the hub. Parameters ---------- targets: list of ints or all [ default: all ] Which engines to shutdown. hub: bool [ default: False ] Whether to include the Hub. hub = True implies targets = all. block: bool [ default: self. block ] Whether to wait for clean shutdown replies or not. restart: bool [ default: False ] NOT IMPLEMENTED whether to restart engines after shutting them down.
def shutdown(self, targets='all', restart=False, hub=False, block=None): """Terminates one or more engine processes, optionally including the hub. Parameters ---------- targets: list of ints or 'all' [default: all] Which engines to shutdown. hub: bool [default: False] Whether to include the Hub. hub=True implies targets='all'. block: bool [default: self.block] Whether to wait for clean shutdown replies or not. restart: bool [default: False] NOT IMPLEMENTED whether to restart engines after shutting them down. """ if restart: raise NotImplementedError("Engine restart is not yet implemented") block = self.block if block is None else block if hub: targets = 'all' targets = self._build_targets(targets)[0] for t in targets: self.session.send(self._control_socket, 'shutdown_request', content={'restart':restart},ident=t) error = False if block or hub: self._flush_ignored_control() for i in range(len(targets)): idents,msg = self.session.recv(self._control_socket, 0) if self.debug: pprint(msg) if msg['content']['status'] != 'ok': error = self._unwrap_exception(msg['content']) else: self._ignored_control_replies += len(targets) if hub: time.sleep(0.25) self.session.send(self._query_socket, 'shutdown_request') idents,msg = self.session.recv(self._query_socket, 0) if self.debug: pprint(msg) if msg['content']['status'] != 'ok': error = self._unwrap_exception(msg['content']) if error: raise error
construct and send an apply message via a socket.
def send_apply_request(self, socket, f, args=None, kwargs=None, subheader=None, track=False, ident=None): """construct and send an apply message via a socket. This is the principal method with which all engine execution is performed by views. """ if self._closed: raise RuntimeError("Client cannot be used after its sockets have been closed") # defaults: args = args if args is not None else [] kwargs = kwargs if kwargs is not None else {} subheader = subheader if subheader is not None else {} # validate arguments if not callable(f) and not isinstance(f, Reference): raise TypeError("f must be callable, not %s"%type(f)) if not isinstance(args, (tuple, list)): raise TypeError("args must be tuple or list, not %s"%type(args)) if not isinstance(kwargs, dict): raise TypeError("kwargs must be dict, not %s"%type(kwargs)) if not isinstance(subheader, dict): raise TypeError("subheader must be dict, not %s"%type(subheader)) bufs = util.pack_apply_message(f,args,kwargs) msg = self.session.send(socket, "apply_request", buffers=bufs, ident=ident, subheader=subheader, track=track) msg_id = msg['header']['msg_id'] self.outstanding.add(msg_id) if ident: # possibly routed to a specific engine if isinstance(ident, list): ident = ident[-1] if ident in self._engines.values(): # save for later, in case of engine death self._outstanding_dict[ident].add(msg_id) self.history.append(msg_id) self.metadata[msg_id]['submitted'] = datetime.now() return msg
construct and send an execute request via a socket.
def send_execute_request(self, socket, code, silent=True, subheader=None, ident=None): """construct and send an execute request via a socket. """ if self._closed: raise RuntimeError("Client cannot be used after its sockets have been closed") # defaults: subheader = subheader if subheader is not None else {} # validate arguments if not isinstance(code, basestring): raise TypeError("code must be text, not %s" % type(code)) if not isinstance(subheader, dict): raise TypeError("subheader must be dict, not %s" % type(subheader)) content = dict(code=code, silent=bool(silent), user_variables=[], user_expressions={}) msg = self.session.send(socket, "execute_request", content=content, ident=ident, subheader=subheader) msg_id = msg['header']['msg_id'] self.outstanding.add(msg_id) if ident: # possibly routed to a specific engine if isinstance(ident, list): ident = ident[-1] if ident in self._engines.values(): # save for later, in case of engine death self._outstanding_dict[ident].add(msg_id) self.history.append(msg_id) self.metadata[msg_id]['submitted'] = datetime.now() return msg
construct a DirectView object.
def load_balanced_view(self, targets=None): """construct a DirectView object. If no arguments are specified, create a LoadBalancedView using all engines. Parameters ---------- targets: list,slice,int,etc. [default: use all engines] The subset of engines across which to load-balance """ if targets == 'all': targets = None if targets is not None: targets = self._build_targets(targets)[1] return LoadBalancedView(client=self, socket=self._task_socket, targets=targets)
construct a DirectView object.
def direct_view(self, targets='all'): """construct a DirectView object. If no targets are specified, create a DirectView using all engines. rc.direct_view('all') is distinguished from rc[:] in that 'all' will evaluate the target engines at each execution, whereas rc[:] will connect to all *current* engines, and that list will not change. That is, 'all' will always use all engines, whereas rc[:] will not use engines added after the DirectView is constructed. Parameters ---------- targets: list,slice,int,etc. [default: use all engines] The engines to use for the View """ single = isinstance(targets, int) # allow 'all' to be lazily evaluated at each execution if targets != 'all': targets = self._build_targets(targets)[1] if single: targets = targets[0] return DirectView(client=self, socket=self._mux_socket, targets=targets)
Retrieve a result by msg_id or history index wrapped in an AsyncResult object.
def get_result(self, indices_or_msg_ids=None, block=None): """Retrieve a result by msg_id or history index, wrapped in an AsyncResult object. If the client already has the results, no request to the Hub will be made. This is a convenient way to construct AsyncResult objects, which are wrappers that include metadata about execution, and allow for awaiting results that were not submitted by this Client. It can also be a convenient way to retrieve the metadata associated with blocking execution, since it always retrieves Examples -------- :: In [10]: r = client.apply() Parameters ---------- indices_or_msg_ids : integer history index, str msg_id, or list of either The indices or msg_ids of indices to be retrieved block : bool Whether to wait for the result to be done Returns ------- AsyncResult A single AsyncResult object will always be returned. AsyncHubResult A subclass of AsyncResult that retrieves results from the Hub """ block = self.block if block is None else block if indices_or_msg_ids is None: indices_or_msg_ids = -1 if not isinstance(indices_or_msg_ids, (list,tuple)): indices_or_msg_ids = [indices_or_msg_ids] theids = [] for id in indices_or_msg_ids: if isinstance(id, int): id = self.history[id] if not isinstance(id, basestring): raise TypeError("indices must be str or int, not %r"%id) theids.append(id) local_ids = filter(lambda msg_id: msg_id in self.history or msg_id in self.results, theids) remote_ids = filter(lambda msg_id: msg_id not in local_ids, theids) if remote_ids: ar = AsyncHubResult(self, msg_ids=theids) else: ar = AsyncResult(self, msg_ids=theids) if block: ar.wait() return ar
Resubmit one or more tasks.
def resubmit(self, indices_or_msg_ids=None, subheader=None, block=None): """Resubmit one or more tasks. in-flight tasks may not be resubmitted. Parameters ---------- indices_or_msg_ids : integer history index, str msg_id, or list of either The indices or msg_ids of indices to be retrieved block : bool Whether to wait for the result to be done Returns ------- AsyncHubResult A subclass of AsyncResult that retrieves results from the Hub """ block = self.block if block is None else block if indices_or_msg_ids is None: indices_or_msg_ids = -1 if not isinstance(indices_or_msg_ids, (list,tuple)): indices_or_msg_ids = [indices_or_msg_ids] theids = [] for id in indices_or_msg_ids: if isinstance(id, int): id = self.history[id] if not isinstance(id, basestring): raise TypeError("indices must be str or int, not %r"%id) theids.append(id) content = dict(msg_ids = theids) self.session.send(self._query_socket, 'resubmit_request', content) zmq.select([self._query_socket], [], []) idents,msg = self.session.recv(self._query_socket, zmq.NOBLOCK) if self.debug: pprint(msg) content = msg['content'] if content['status'] != 'ok': raise self._unwrap_exception(content) mapping = content['resubmitted'] new_ids = [ mapping[msg_id] for msg_id in theids ] ar = AsyncHubResult(self, msg_ids=new_ids) if block: ar.wait() return ar
Check on the status of the result ( s ) of the apply request with msg_ids.
def result_status(self, msg_ids, status_only=True): """Check on the status of the result(s) of the apply request with `msg_ids`. If status_only is False, then the actual results will be retrieved, else only the status of the results will be checked. Parameters ---------- msg_ids : list of msg_ids if int: Passed as index to self.history for convenience. status_only : bool (default: True) if False: Retrieve the actual results of completed tasks. Returns ------- results : dict There will always be the keys 'pending' and 'completed', which will be lists of msg_ids that are incomplete or complete. If `status_only` is False, then completed results will be keyed by their `msg_id`. """ if not isinstance(msg_ids, (list,tuple)): msg_ids = [msg_ids] theids = [] for msg_id in msg_ids: if isinstance(msg_id, int): msg_id = self.history[msg_id] if not isinstance(msg_id, basestring): raise TypeError("msg_ids must be str, not %r"%msg_id) theids.append(msg_id) completed = [] local_results = {} # comment this block out to temporarily disable local shortcut: for msg_id in theids: if msg_id in self.results: completed.append(msg_id) local_results[msg_id] = self.results[msg_id] theids.remove(msg_id) if theids: # some not locally cached content = dict(msg_ids=theids, status_only=status_only) msg = self.session.send(self._query_socket, "result_request", content=content) zmq.select([self._query_socket], [], []) idents,msg = self.session.recv(self._query_socket, zmq.NOBLOCK) if self.debug: pprint(msg) content = msg['content'] if content['status'] != 'ok': raise self._unwrap_exception(content) buffers = msg['buffers'] else: content = dict(completed=[],pending=[]) content['completed'].extend(completed) if status_only: return content failures = [] # load cached results into result: content.update(local_results) # update cache with results: for msg_id in sorted(theids): if msg_id in content['completed']: rec = content[msg_id] parent = rec['header'] header = rec['result_header'] rcontent = rec['result_content'] iodict = rec['io'] if isinstance(rcontent, str): rcontent = self.session.unpack(rcontent) md = self.metadata[msg_id] md.update(self._extract_metadata(header, parent, rcontent)) if rec.get('received'): md['received'] = rec['received'] md.update(iodict) if rcontent['status'] == 'ok': if header['msg_type'] == 'apply_reply': res,buffers = util.unserialize_object(buffers) elif header['msg_type'] == 'execute_reply': res = ExecuteReply(msg_id, rcontent, md) else: raise KeyError("unhandled msg type: %r" % header[msg_type]) else: res = self._unwrap_exception(rcontent) failures.append(res) self.results[msg_id] = res content[msg_id] = res if len(theids) == 1 and failures: raise failures[0] error.collect_exceptions(failures, "result_status") return content
Fetch the status of engine queues.
def queue_status(self, targets='all', verbose=False): """Fetch the status of engine queues. Parameters ---------- targets : int/str/list of ints/strs the engines whose states are to be queried. default : all verbose : bool Whether to return lengths only, or lists of ids for each element """ if targets == 'all': # allow 'all' to be evaluated on the engine engine_ids = None else: engine_ids = self._build_targets(targets)[1] content = dict(targets=engine_ids, verbose=verbose) self.session.send(self._query_socket, "queue_request", content=content) idents,msg = self.session.recv(self._query_socket, 0) if self.debug: pprint(msg) content = msg['content'] status = content.pop('status') if status != 'ok': raise self._unwrap_exception(content) content = rekey(content) if isinstance(targets, int): return content[targets] else: return content
Tell the Hub to forget results.
def purge_results(self, jobs=[], targets=[]): """Tell the Hub to forget results. Individual results can be purged by msg_id, or the entire history of specific targets can be purged. Use `purge_results('all')` to scrub everything from the Hub's db. Parameters ---------- jobs : str or list of str or AsyncResult objects the msg_ids whose results should be forgotten. targets : int/str/list of ints/strs The targets, by int_id, whose entire history is to be purged. default : None """ if not targets and not jobs: raise ValueError("Must specify at least one of `targets` and `jobs`") if targets: targets = self._build_targets(targets)[1] # construct msg_ids from jobs if jobs == 'all': msg_ids = jobs else: msg_ids = [] if isinstance(jobs, (basestring,AsyncResult)): jobs = [jobs] bad_ids = filter(lambda obj: not isinstance(obj, (basestring, AsyncResult)), jobs) if bad_ids: raise TypeError("Invalid msg_id type %r, expected str or AsyncResult"%bad_ids[0]) for j in jobs: if isinstance(j, AsyncResult): msg_ids.extend(j.msg_ids) else: msg_ids.append(j) content = dict(engine_ids=targets, msg_ids=msg_ids) self.session.send(self._query_socket, "purge_request", content=content) idents, msg = self.session.recv(self._query_socket, 0) if self.debug: pprint(msg) content = msg['content'] if content['status'] != 'ok': raise self._unwrap_exception(content)
Get the Hub s history
def hub_history(self): """Get the Hub's history Just like the Client, the Hub has a history, which is a list of msg_ids. This will contain the history of all clients, and, depending on configuration, may contain history across multiple cluster sessions. Any msg_id returned here is a valid argument to `get_result`. Returns ------- msg_ids : list of strs list of all msg_ids, ordered by task submission time. """ self.session.send(self._query_socket, "history_request", content={}) idents, msg = self.session.recv(self._query_socket, 0) if self.debug: pprint(msg) content = msg['content'] if content['status'] != 'ok': raise self._unwrap_exception(content) else: return content['history']
Query the Hub s TaskRecord database
def db_query(self, query, keys=None): """Query the Hub's TaskRecord database This will return a list of task record dicts that match `query` Parameters ---------- query : mongodb query dict The search dict. See mongodb query docs for details. keys : list of strs [optional] The subset of keys to be returned. The default is to fetch everything but buffers. 'msg_id' will *always* be included. """ if isinstance(keys, basestring): keys = [keys] content = dict(query=query, keys=keys) self.session.send(self._query_socket, "db_request", content=content) idents, msg = self.session.recv(self._query_socket, 0) if self.debug: pprint(msg) content = msg['content'] if content['status'] != 'ok': raise self._unwrap_exception(content) records = content['records'] buffer_lens = content['buffer_lens'] result_buffer_lens = content['result_buffer_lens'] buffers = msg['buffers'] has_bufs = buffer_lens is not None has_rbufs = result_buffer_lens is not None for i,rec in enumerate(records): # relink buffers if has_bufs: blen = buffer_lens[i] rec['buffers'], buffers = buffers[:blen],buffers[blen:] if has_rbufs: blen = result_buffer_lens[i] rec['result_buffers'], buffers = buffers[:blen],buffers[blen:] return records
Return a set of opcodes by the names in names.
def _opcode_set(*names): """Return a set of opcodes by the names in `names`.""" s = set() for name in names: try: s.add(_opcode(name)) except KeyError: pass return s
Create a ByteParser on demand.
def _get_byte_parser(self): """Create a ByteParser on demand.""" if not self._byte_parser: self._byte_parser = \ ByteParser(text=self.text, filename=self.filename) return self._byte_parser
Find the lines matching one of a list of regexes.
def lines_matching(self, *regexes): """Find the lines matching one of a list of regexes. Returns a set of line numbers, the lines that contain a match for one of the regexes in `regexes`. The entire line needn't match, just a part of it. """ regex_c = re.compile(join_regex(regexes)) matches = set() for i, ltext in enumerate(self.lines): if regex_c.search(ltext): matches.add(i+1) return matches
Parse the source to find the interesting facts about its lines.
def _raw_parse(self): """Parse the source to find the interesting facts about its lines. A handful of member fields are updated. """ # Find lines which match an exclusion pattern. if self.exclude: self.excluded = self.lines_matching(self.exclude) # Tokenize, to find excluded suites, to find docstrings, and to find # multi-line statements. indent = 0 exclude_indent = 0 excluding = False prev_toktype = token.INDENT first_line = None empty = True tokgen = generate_tokens(self.text) for toktype, ttext, (slineno, _), (elineno, _), ltext in tokgen: if self.show_tokens: # pragma: not covered print("%10s %5s %-20r %r" % ( tokenize.tok_name.get(toktype, toktype), nice_pair((slineno, elineno)), ttext, ltext )) if toktype == token.INDENT: indent += 1 elif toktype == token.DEDENT: indent -= 1 elif toktype == token.NAME and ttext == 'class': # Class definitions look like branches in the byte code, so # we need to exclude them. The simplest way is to note the # lines with the 'class' keyword. self.classdefs.add(slineno) elif toktype == token.OP and ttext == ':': if not excluding and elineno in self.excluded: # Start excluding a suite. We trigger off of the colon # token so that the #pragma comment will be recognized on # the same line as the colon. exclude_indent = indent excluding = True elif toktype == token.STRING and prev_toktype == token.INDENT: # Strings that are first on an indented line are docstrings. # (a trick from trace.py in the stdlib.) This works for # 99.9999% of cases. For the rest (!) see: # http://stackoverflow.com/questions/1769332/x/1769794#1769794 self.docstrings.update(range(slineno, elineno+1)) elif toktype == token.NEWLINE: if first_line is not None and elineno != first_line: # We're at the end of a line, and we've ended on a # different line than the first line of the statement, # so record a multi-line range. rng = (first_line, elineno) for l in range(first_line, elineno+1): self.multiline[l] = rng first_line = None if ttext.strip() and toktype != tokenize.COMMENT: # A non-whitespace token. empty = False if first_line is None: # The token is not whitespace, and is the first in a # statement. first_line = slineno # Check whether to end an excluded suite. if excluding and indent <= exclude_indent: excluding = False if excluding: self.excluded.add(elineno) prev_toktype = toktype # Find the starts of the executable statements. if not empty: self.statement_starts.update(self.byte_parser._find_statements())
Return the first line number of the statement including line.
def first_line(self, line): """Return the first line number of the statement including `line`.""" rng = self.multiline.get(line) if rng: first_line = rng[0] else: first_line = line return first_line
Map the line numbers in lines to the correct first line of the statement.
def first_lines(self, lines, *ignores): """Map the line numbers in `lines` to the correct first line of the statement. Skip any line mentioned in any of the sequences in `ignores`. Returns a set of the first lines. """ ignore = set() for ign in ignores: ignore.update(ign) lset = set() for l in lines: if l in ignore: continue new_l = self.first_line(l) if new_l not in ignore: lset.add(new_l) return lset
Parse source text to find executable lines excluded lines etc.
def parse_source(self): """Parse source text to find executable lines, excluded lines, etc. Return values are 1) a set of executable line numbers, and 2) a set of excluded line numbers. Reported line numbers are normalized to the first line of multi-line statements. """ try: self._raw_parse() except (tokenize.TokenError, IndentationError): _, tokerr, _ = sys.exc_info() msg, lineno = tokerr.args raise NotPython( "Couldn't parse '%s' as Python source: '%s' at %s" % (self.filename, msg, lineno) ) excluded_lines = self.first_lines(self.excluded) lines = self.first_lines( self.statement_starts, excluded_lines, self.docstrings ) return lines, excluded_lines
Get information about the arcs available in the code.
def arcs(self): """Get information about the arcs available in the code. Returns a sorted list of line number pairs. Line numbers have been normalized to the first line of multiline statements. """ all_arcs = [] for l1, l2 in self.byte_parser._all_arcs(): fl1 = self.first_line(l1) fl2 = self.first_line(l2) if fl1 != fl2: all_arcs.append((fl1, fl2)) return sorted(all_arcs)
Get a mapping from line numbers to count of exits from that line.
def exit_counts(self): """Get a mapping from line numbers to count of exits from that line. Excluded lines are excluded. """ excluded_lines = self.first_lines(self.excluded) exit_counts = {} for l1, l2 in self.arcs(): if l1 < 0: # Don't ever report -1 as a line number continue if l1 in excluded_lines: # Don't report excluded lines as line numbers. continue if l2 in excluded_lines: # Arcs to excluded lines shouldn't count. continue if l1 not in exit_counts: exit_counts[l1] = 0 exit_counts[l1] += 1 # Class definitions have one extra exit, so remove one for each: for l in self.classdefs: # Ensure key is there: classdefs can include excluded lines. if l in exit_counts: exit_counts[l] -= 1 return exit_counts
Iterate over all the code objects nested within this one.
def child_parsers(self): """Iterate over all the code objects nested within this one. The iteration includes `self` as its first value. """ children = CodeObjects(self.code) return [ByteParser(code=c, text=self.text) for c in children]
Map byte offsets to line numbers in code.
def _bytes_lines(self): """Map byte offsets to line numbers in `code`. Uses co_lnotab described in Python/compile.c to map byte offsets to line numbers. Produces a sequence: (b0, l0), (b1, l1), ... Only byte offsets that correspond to line numbers are included in the results. """ # Adapted from dis.py in the standard library. byte_increments = bytes_to_ints(self.code.co_lnotab[0::2]) line_increments = bytes_to_ints(self.code.co_lnotab[1::2]) last_line_num = None line_num = self.code.co_firstlineno byte_num = 0 for byte_incr, line_incr in zip(byte_increments, line_increments): if byte_incr: if line_num != last_line_num: yield (byte_num, line_num) last_line_num = line_num byte_num += byte_incr line_num += line_incr if line_num != last_line_num: yield (byte_num, line_num)
Find the statements in self. code.
def _find_statements(self): """Find the statements in `self.code`. Produce a sequence of line numbers that start statements. Recurses into all code objects reachable from `self.code`. """ for bp in self.child_parsers(): # Get all of the lineno information from this code. for _, l in bp._bytes_lines(): yield l
Get a string version of block_stack for debugging.
def _block_stack_repr(self, block_stack): """Get a string version of `block_stack`, for debugging.""" blocks = ", ".join( ["(%s, %r)" % (dis.opname[b[0]], b[1]) for b in block_stack] ) return "[" + blocks + "]"