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train | discriminator1 | First part of the discriminator which takes a 32x32 image as input
and output a convolutional feature map, this is required to calculate
the layer loss | example/vae-gan/vaegan_mxnet.py | def discriminator1(ndf, no_bias=True, fix_gamma=True, eps=1e-5 + 1e-12):
'''First part of the discriminator which takes a 32x32 image as input
and output a convolutional feature map, this is required to calculate
the layer loss'''
BatchNorm = mx.sym.BatchNorm
data = mx.sym.Variable('data')
d1 = mx.sym.Convolution(data, name='d1', kernel=(5,5), stride=(2,2), pad=(2,2), num_filter=ndf, no_bias=no_bias)
dact1 = mx.sym.LeakyReLU(d1, name='dact1', act_type='leaky', slope=0.2)
d2 = mx.sym.Convolution(dact1, name='d2', kernel=(5,5), stride=(2,2), pad=(2,2), num_filter=ndf*2, no_bias=no_bias)
dbn2 = BatchNorm(d2, name='dbn2', fix_gamma=fix_gamma, eps=eps)
dact2 = mx.sym.LeakyReLU(dbn2, name='dact2', act_type='leaky', slope=0.2)
d3 = mx.sym.Convolution(dact2, name='d3', kernel=(5,5), stride=(2,2), pad=(2,2), num_filter=ndf*4, no_bias=no_bias)
dbn3 = BatchNorm(d3, name='dbn3', fix_gamma=fix_gamma, eps=eps)
dact3 = mx.sym.LeakyReLU(dbn3, name='dact3', act_type='leaky', slope=0.2)
return dact3 | def discriminator1(ndf, no_bias=True, fix_gamma=True, eps=1e-5 + 1e-12):
'''First part of the discriminator which takes a 32x32 image as input
and output a convolutional feature map, this is required to calculate
the layer loss'''
BatchNorm = mx.sym.BatchNorm
data = mx.sym.Variable('data')
d1 = mx.sym.Convolution(data, name='d1', kernel=(5,5), stride=(2,2), pad=(2,2), num_filter=ndf, no_bias=no_bias)
dact1 = mx.sym.LeakyReLU(d1, name='dact1', act_type='leaky', slope=0.2)
d2 = mx.sym.Convolution(dact1, name='d2', kernel=(5,5), stride=(2,2), pad=(2,2), num_filter=ndf*2, no_bias=no_bias)
dbn2 = BatchNorm(d2, name='dbn2', fix_gamma=fix_gamma, eps=eps)
dact2 = mx.sym.LeakyReLU(dbn2, name='dact2', act_type='leaky', slope=0.2)
d3 = mx.sym.Convolution(dact2, name='d3', kernel=(5,5), stride=(2,2), pad=(2,2), num_filter=ndf*4, no_bias=no_bias)
dbn3 = BatchNorm(d3, name='dbn3', fix_gamma=fix_gamma, eps=eps)
dact3 = mx.sym.LeakyReLU(dbn3, name='dact3', act_type='leaky', slope=0.2)
return dact3 | [
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train | discriminator2 | Second part of the discriminator which takes a 256x8x8 feature map as input
and generates the loss based on whether the input image was a real one or fake one | example/vae-gan/vaegan_mxnet.py | def discriminator2(ndf, no_bias=True, fix_gamma=True, eps=1e-5 + 1e-12):
'''Second part of the discriminator which takes a 256x8x8 feature map as input
and generates the loss based on whether the input image was a real one or fake one'''
BatchNorm = mx.sym.BatchNorm
data = mx.sym.Variable('data')
label = mx.sym.Variable('label')
d4 = mx.sym.Convolution(data, name='d4', kernel=(5,5), stride=(2,2), pad=(2,2), num_filter=ndf*8, no_bias=no_bias)
dbn4 = BatchNorm(d4, name='dbn4', fix_gamma=fix_gamma, eps=eps)
dact4 = mx.sym.LeakyReLU(dbn4, name='dact4', act_type='leaky', slope=0.2)
h = mx.sym.Flatten(dact4)
d5 = mx.sym.FullyConnected(h, num_hidden=1, name="d5")
dloss = mx.sym.LogisticRegressionOutput(data=d5, label=label, name='dloss')
return dloss | def discriminator2(ndf, no_bias=True, fix_gamma=True, eps=1e-5 + 1e-12):
'''Second part of the discriminator which takes a 256x8x8 feature map as input
and generates the loss based on whether the input image was a real one or fake one'''
BatchNorm = mx.sym.BatchNorm
data = mx.sym.Variable('data')
label = mx.sym.Variable('label')
d4 = mx.sym.Convolution(data, name='d4', kernel=(5,5), stride=(2,2), pad=(2,2), num_filter=ndf*8, no_bias=no_bias)
dbn4 = BatchNorm(d4, name='dbn4', fix_gamma=fix_gamma, eps=eps)
dact4 = mx.sym.LeakyReLU(dbn4, name='dact4', act_type='leaky', slope=0.2)
h = mx.sym.Flatten(dact4)
d5 = mx.sym.FullyConnected(h, num_hidden=1, name="d5")
dloss = mx.sym.LogisticRegressionOutput(data=d5, label=label, name='dloss')
return dloss | [
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train | GaussianLogDensity | GaussianLogDensity loss calculation for layer wise loss | example/vae-gan/vaegan_mxnet.py | def GaussianLogDensity(x, mu, log_var, name='GaussianLogDensity', EPSILON = 1e-6):
'''GaussianLogDensity loss calculation for layer wise loss
'''
c = mx.sym.ones_like(log_var)*2.0 * 3.1416
c = mx.symbol.log(c)
var = mx.sym.exp(log_var)
x_mu2 = mx.symbol.square(x - mu) # [Issue] not sure the dim works or not?
x_mu2_over_var = mx.symbol.broadcast_div(x_mu2, var + EPSILON)
log_prob = -0.5 * (c + log_var + x_mu2_over_var)
log_prob = mx.symbol.sum(log_prob, axis=1, name=name) # keep_dims=True,
return log_prob | def GaussianLogDensity(x, mu, log_var, name='GaussianLogDensity', EPSILON = 1e-6):
'''GaussianLogDensity loss calculation for layer wise loss
'''
c = mx.sym.ones_like(log_var)*2.0 * 3.1416
c = mx.symbol.log(c)
var = mx.sym.exp(log_var)
x_mu2 = mx.symbol.square(x - mu) # [Issue] not sure the dim works or not?
x_mu2_over_var = mx.symbol.broadcast_div(x_mu2, var + EPSILON)
log_prob = -0.5 * (c + log_var + x_mu2_over_var)
log_prob = mx.symbol.sum(log_prob, axis=1, name=name) # keep_dims=True,
return log_prob | [
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train | DiscriminatorLayerLoss | Calculate the discriminator layer loss | example/vae-gan/vaegan_mxnet.py | def DiscriminatorLayerLoss():
'''Calculate the discriminator layer loss
'''
data = mx.sym.Variable('data')
label = mx.sym.Variable('label')
data = mx.sym.Flatten(data)
label = mx.sym.Flatten(label)
label = mx.sym.BlockGrad(label)
zeros = mx.sym.zeros_like(data)
output = -GaussianLogDensity(label, data, zeros)
dloss = mx.symbol.MakeLoss(mx.symbol.mean(output),name='lloss')
return dloss | def DiscriminatorLayerLoss():
'''Calculate the discriminator layer loss
'''
data = mx.sym.Variable('data')
label = mx.sym.Variable('label')
data = mx.sym.Flatten(data)
label = mx.sym.Flatten(label)
label = mx.sym.BlockGrad(label)
zeros = mx.sym.zeros_like(data)
output = -GaussianLogDensity(label, data, zeros)
dloss = mx.symbol.MakeLoss(mx.symbol.mean(output),name='lloss')
return dloss | [
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train | KLDivergenceLoss | KLDivergenceLoss loss | example/vae-gan/vaegan_mxnet.py | def KLDivergenceLoss():
'''KLDivergenceLoss loss
'''
data = mx.sym.Variable('data')
mu1, lv1 = mx.sym.split(data, num_outputs=2, axis=0)
mu2 = mx.sym.zeros_like(mu1)
lv2 = mx.sym.zeros_like(lv1)
v1 = mx.sym.exp(lv1)
v2 = mx.sym.exp(lv2)
mu_diff_sq = mx.sym.square(mu1 - mu2)
dimwise_kld = .5 * (
(lv2 - lv1) + mx.symbol.broadcast_div(v1, v2) + mx.symbol.broadcast_div(mu_diff_sq, v2) - 1.)
KL = mx.symbol.sum(dimwise_kld, axis=1)
KLloss = mx.symbol.MakeLoss(mx.symbol.mean(KL),name='KLloss')
return KLloss | def KLDivergenceLoss():
'''KLDivergenceLoss loss
'''
data = mx.sym.Variable('data')
mu1, lv1 = mx.sym.split(data, num_outputs=2, axis=0)
mu2 = mx.sym.zeros_like(mu1)
lv2 = mx.sym.zeros_like(lv1)
v1 = mx.sym.exp(lv1)
v2 = mx.sym.exp(lv2)
mu_diff_sq = mx.sym.square(mu1 - mu2)
dimwise_kld = .5 * (
(lv2 - lv1) + mx.symbol.broadcast_div(v1, v2) + mx.symbol.broadcast_div(mu_diff_sq, v2) - 1.)
KL = mx.symbol.sum(dimwise_kld, axis=1)
KLloss = mx.symbol.MakeLoss(mx.symbol.mean(KL),name='KLloss')
return KLloss | [
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train | get_data | Get the dataset | example/vae-gan/vaegan_mxnet.py | def get_data(path, activation):
'''Get the dataset
'''
data = []
image_names = []
for filename in os.listdir(path):
img = cv2.imread(os.path.join(path,filename), cv2.IMREAD_GRAYSCALE)
image_names.append(filename)
if img is not None:
data.append(img)
data = np.asarray(data)
if activation == 'sigmoid':
data = data.astype(np.float32)/(255.0)
elif activation == 'tanh':
data = data.astype(np.float32)/(255.0/2) - 1.0
data = data.reshape((data.shape[0], 1, data.shape[1], data.shape[2]))
np.random.seed(1234)
p = np.random.permutation(data.shape[0])
X = data[p]
return X, image_names | def get_data(path, activation):
'''Get the dataset
'''
data = []
image_names = []
for filename in os.listdir(path):
img = cv2.imread(os.path.join(path,filename), cv2.IMREAD_GRAYSCALE)
image_names.append(filename)
if img is not None:
data.append(img)
data = np.asarray(data)
if activation == 'sigmoid':
data = data.astype(np.float32)/(255.0)
elif activation == 'tanh':
data = data.astype(np.float32)/(255.0/2) - 1.0
data = data.reshape((data.shape[0], 1, data.shape[1], data.shape[2]))
np.random.seed(1234)
p = np.random.permutation(data.shape[0])
X = data[p]
return X, image_names | [
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train | fill_buf | fill the ith grid of the buffer matrix with the values from the img
buf : buffer matrix
i : serial of the image in the 2D grid
img : image data
shape : ( height width depth ) of image | example/vae-gan/vaegan_mxnet.py | def fill_buf(buf, i, img, shape):
'''fill the ith grid of the buffer matrix with the values from the img
buf : buffer matrix
i : serial of the image in the 2D grid
img : image data
shape : ( height width depth ) of image'''
# grid height is a multiple of individual image height
m = buf.shape[0]/shape[0]
sx = (i%m)*shape[1]
sy = (i//m)*shape[0]
sx = int(sx)
sy = int(sy)
buf[sy:sy+shape[0], sx:sx+shape[1], :] = img | def fill_buf(buf, i, img, shape):
'''fill the ith grid of the buffer matrix with the values from the img
buf : buffer matrix
i : serial of the image in the 2D grid
img : image data
shape : ( height width depth ) of image'''
# grid height is a multiple of individual image height
m = buf.shape[0]/shape[0]
sx = (i%m)*shape[1]
sy = (i//m)*shape[0]
sx = int(sx)
sy = int(sy)
buf[sy:sy+shape[0], sx:sx+shape[1], :] = img | [
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train | visual | create a grid of images and save it as a final image
title : grid image name
X : array of images | example/vae-gan/vaegan_mxnet.py | def visual(title, X, activation):
'''create a grid of images and save it as a final image
title : grid image name
X : array of images
'''
assert len(X.shape) == 4
X = X.transpose((0, 2, 3, 1))
if activation == 'sigmoid':
X = np.clip((X)*(255.0), 0, 255).astype(np.uint8)
elif activation == 'tanh':
X = np.clip((X+1.0)*(255.0/2.0), 0, 255).astype(np.uint8)
n = np.ceil(np.sqrt(X.shape[0]))
buff = np.zeros((int(n*X.shape[1]), int(n*X.shape[2]), int(X.shape[3])), dtype=np.uint8)
for i, img in enumerate(X):
fill_buf(buff, i, img, X.shape[1:3])
cv2.imwrite('%s.jpg' % (title), buff) | def visual(title, X, activation):
'''create a grid of images and save it as a final image
title : grid image name
X : array of images
'''
assert len(X.shape) == 4
X = X.transpose((0, 2, 3, 1))
if activation == 'sigmoid':
X = np.clip((X)*(255.0), 0, 255).astype(np.uint8)
elif activation == 'tanh':
X = np.clip((X+1.0)*(255.0/2.0), 0, 255).astype(np.uint8)
n = np.ceil(np.sqrt(X.shape[0]))
buff = np.zeros((int(n*X.shape[1]), int(n*X.shape[2]), int(X.shape[3])), dtype=np.uint8)
for i, img in enumerate(X):
fill_buf(buff, i, img, X.shape[1:3])
cv2.imwrite('%s.jpg' % (title), buff) | [
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train | train | adversarial training of the VAE | example/vae-gan/vaegan_mxnet.py | def train(dataset, nef, ndf, ngf, nc, batch_size, Z, lr, beta1, epsilon, ctx, check_point, g_dl_weight, output_path, checkpoint_path, data_path, activation,num_epoch, save_after_every, visualize_after_every, show_after_every):
'''adversarial training of the VAE
'''
#encoder
z_mu, z_lv, z = encoder(nef, Z, batch_size)
symE = mx.sym.Group([z_mu, z_lv, z])
#generator
symG = generator(ngf, nc, no_bias=True, fix_gamma=True, eps=1e-5 + 1e-12, z_dim = Z, activation=activation )
#discriminator
h = discriminator1(ndf)
dloss = discriminator2(ndf)
symD1 = h
symD2 = dloss
# ==============data==============
X_train, _ = get_data(data_path, activation)
train_iter = mx.io.NDArrayIter(X_train, batch_size=batch_size, shuffle=True)
rand_iter = RandIter(batch_size, Z)
label = mx.nd.zeros((batch_size,), ctx=ctx)
# =============module E=============
modE = mx.mod.Module(symbol=symE, data_names=('data',), label_names=None, context=ctx)
modE.bind(data_shapes=train_iter.provide_data)
modE.init_params(initializer=mx.init.Normal(0.02))
modE.init_optimizer(
optimizer='adam',
optimizer_params={
'learning_rate': lr,
'wd': 1e-6,
'beta1': beta1,
'epsilon': epsilon,
'rescale_grad': (1.0/batch_size)
})
mods = [modE]
# =============module G=============
modG = mx.mod.Module(symbol=symG, data_names=('rand',), label_names=None, context=ctx)
modG.bind(data_shapes=rand_iter.provide_data, inputs_need_grad=True)
modG.init_params(initializer=mx.init.Normal(0.02))
modG.init_optimizer(
optimizer='adam',
optimizer_params={
'learning_rate': lr,
'wd': 1e-6,
'beta1': beta1,
'epsilon': epsilon,
})
mods.append(modG)
# =============module D=============
modD1 = mx.mod.Module(symD1, label_names=[], context=ctx)
modD2 = mx.mod.Module(symD2, label_names=('label',), context=ctx)
modD = mx.mod.SequentialModule()
modD.add(modD1).add(modD2, take_labels=True, auto_wiring=True)
modD.bind(data_shapes=train_iter.provide_data,
label_shapes=[('label', (batch_size,))],
inputs_need_grad=True)
modD.init_params(initializer=mx.init.Normal(0.02))
modD.init_optimizer(
optimizer='adam',
optimizer_params={
'learning_rate': lr,
'wd': 1e-3,
'beta1': beta1,
'epsilon': epsilon,
'rescale_grad': (1.0/batch_size)
})
mods.append(modD)
# =============module DL=============
symDL = DiscriminatorLayerLoss()
modDL = mx.mod.Module(symbol=symDL, data_names=('data',), label_names=('label',), context=ctx)
modDL.bind(data_shapes=[('data', (batch_size,nef * 4,4,4))], ################################################################################################################################ fix 512 here
label_shapes=[('label', (batch_size,nef * 4,4,4))],
inputs_need_grad=True)
modDL.init_params(initializer=mx.init.Normal(0.02))
modDL.init_optimizer(
optimizer='adam',
optimizer_params={
'learning_rate': lr,
'wd': 0.,
'beta1': beta1,
'epsilon': epsilon,
'rescale_grad': (1.0/batch_size)
})
# =============module KL=============
symKL = KLDivergenceLoss()
modKL = mx.mod.Module(symbol=symKL, data_names=('data',), label_names=None, context=ctx)
modKL.bind(data_shapes=[('data', (batch_size*2,Z))],
inputs_need_grad=True)
modKL.init_params(initializer=mx.init.Normal(0.02))
modKL.init_optimizer(
optimizer='adam',
optimizer_params={
'learning_rate': lr,
'wd': 0.,
'beta1': beta1,
'epsilon': epsilon,
'rescale_grad': (1.0/batch_size)
})
mods.append(modKL)
def norm_stat(d):
return mx.nd.norm(d)/np.sqrt(d.size)
mon = mx.mon.Monitor(10, norm_stat, pattern=".*output|d1_backward_data", sort=True)
mon = None
if mon is not None:
for mod in mods:
pass
def facc(label, pred):
'''calculating prediction accuracy
'''
pred = pred.ravel()
label = label.ravel()
return ((pred > 0.5) == label).mean()
def fentropy(label, pred):
'''calculating binary cross-entropy loss
'''
pred = pred.ravel()
label = label.ravel()
return -(label*np.log(pred+1e-12) + (1.-label)*np.log(1.-pred+1e-12)).mean()
def kldivergence(label, pred):
'''calculating KL divergence loss
'''
mean, log_var = np.split(pred, 2, axis=0)
var = np.exp(log_var)
KLLoss = -0.5 * np.sum(1 + log_var - np.power(mean, 2) - var)
KLLoss = KLLoss / nElements
return KLLoss
mG = mx.metric.CustomMetric(fentropy)
mD = mx.metric.CustomMetric(fentropy)
mE = mx.metric.CustomMetric(kldivergence)
mACC = mx.metric.CustomMetric(facc)
print('Training...')
stamp = datetime.now().strftime('%Y_%m_%d-%H_%M')
# =============train===============
for epoch in range(num_epoch):
train_iter.reset()
for t, batch in enumerate(train_iter):
rbatch = rand_iter.next()
if mon is not None:
mon.tic()
modG.forward(rbatch, is_train=True)
outG = modG.get_outputs()
# update discriminator on fake
label[:] = 0
modD.forward(mx.io.DataBatch(outG, [label]), is_train=True)
modD.backward()
gradD11 = [[grad.copyto(grad.context) for grad in grads] for grads in modD1._exec_group.grad_arrays]
gradD12 = [[grad.copyto(grad.context) for grad in grads] for grads in modD2._exec_group.grad_arrays]
modD.update_metric(mD, [label])
modD.update_metric(mACC, [label])
#update discriminator on decoded
modE.forward(batch, is_train=True)
mu, lv, z = modE.get_outputs()
z = z.reshape((batch_size, Z, 1, 1))
sample = mx.io.DataBatch([z], label=None, provide_data = [('rand', (batch_size, Z, 1, 1))])
modG.forward(sample, is_train=True)
xz = modG.get_outputs()
label[:] = 0
modD.forward(mx.io.DataBatch(xz, [label]), is_train=True)
modD.backward()
#modD.update()
gradD21 = [[grad.copyto(grad.context) for grad in grads] for grads in modD1._exec_group.grad_arrays]
gradD22 = [[grad.copyto(grad.context) for grad in grads] for grads in modD2._exec_group.grad_arrays]
modD.update_metric(mD, [label])
modD.update_metric(mACC, [label])
# update discriminator on real
label[:] = 1
batch.label = [label]
modD.forward(batch, is_train=True)
lx = [out.copyto(out.context) for out in modD1.get_outputs()]
modD.backward()
for gradsr, gradsf, gradsd in zip(modD1._exec_group.grad_arrays, gradD11, gradD21):
for gradr, gradf, gradd in zip(gradsr, gradsf, gradsd):
gradr += 0.5 * (gradf + gradd)
for gradsr, gradsf, gradsd in zip(modD2._exec_group.grad_arrays, gradD12, gradD22):
for gradr, gradf, gradd in zip(gradsr, gradsf, gradsd):
gradr += 0.5 * (gradf + gradd)
modD.update()
modD.update_metric(mD, [label])
modD.update_metric(mACC, [label])
modG.forward(rbatch, is_train=True)
outG = modG.get_outputs()
label[:] = 1
modD.forward(mx.io.DataBatch(outG, [label]), is_train=True)
modD.backward()
diffD = modD1.get_input_grads()
modG.backward(diffD)
gradG1 = [[grad.copyto(grad.context) for grad in grads] for grads in modG._exec_group.grad_arrays]
mG.update([label], modD.get_outputs())
modG.forward(sample, is_train=True)
xz = modG.get_outputs()
label[:] = 1
modD.forward(mx.io.DataBatch(xz, [label]), is_train=True)
modD.backward()
diffD = modD1.get_input_grads()
modG.backward(diffD)
gradG2 = [[grad.copyto(grad.context) for grad in grads] for grads in modG._exec_group.grad_arrays]
mG.update([label], modD.get_outputs())
modG.forward(sample, is_train=True)
xz = modG.get_outputs()
modD1.forward(mx.io.DataBatch(xz, []), is_train=True)
outD1 = modD1.get_outputs()
modDL.forward(mx.io.DataBatch(outD1, lx), is_train=True)
modDL.backward()
dlGrad = modDL.get_input_grads()
modD1.backward(dlGrad)
diffD = modD1.get_input_grads()
modG.backward(diffD)
for grads, gradsG1, gradsG2 in zip(modG._exec_group.grad_arrays, gradG1, gradG2):
for grad, gradg1, gradg2 in zip(grads, gradsG1, gradsG2):
grad = g_dl_weight * grad + 0.5 * (gradg1 + gradg2)
modG.update()
mG.update([label], modD.get_outputs())
modG.forward(rbatch, is_train=True)
outG = modG.get_outputs()
label[:] = 1
modD.forward(mx.io.DataBatch(outG, [label]), is_train=True)
modD.backward()
diffD = modD1.get_input_grads()
modG.backward(diffD)
gradG1 = [[grad.copyto(grad.context) for grad in grads] for grads in modG._exec_group.grad_arrays]
mG.update([label], modD.get_outputs())
modG.forward(sample, is_train=True)
xz = modG.get_outputs()
label[:] = 1
modD.forward(mx.io.DataBatch(xz, [label]), is_train=True)
modD.backward()
diffD = modD1.get_input_grads()
modG.backward(diffD)
gradG2 = [[grad.copyto(grad.context) for grad in grads] for grads in modG._exec_group.grad_arrays]
mG.update([label], modD.get_outputs())
modG.forward(sample, is_train=True)
xz = modG.get_outputs()
modD1.forward(mx.io.DataBatch(xz, []), is_train=True)
outD1 = modD1.get_outputs()
modDL.forward(mx.io.DataBatch(outD1, lx), is_train=True)
modDL.backward()
dlGrad = modDL.get_input_grads()
modD1.backward(dlGrad)
diffD = modD1.get_input_grads()
modG.backward(diffD)
for grads, gradsG1, gradsG2 in zip(modG._exec_group.grad_arrays, gradG1, gradG2):
for grad, gradg1, gradg2 in zip(grads, gradsG1, gradsG2):
grad = g_dl_weight * grad + 0.5 * (gradg1 + gradg2)
modG.update()
mG.update([label], modD.get_outputs())
modG.forward(sample, is_train=True)
xz = modG.get_outputs()
#update generator
modD1.forward(mx.io.DataBatch(xz, []), is_train=True)
outD1 = modD1.get_outputs()
modDL.forward(mx.io.DataBatch(outD1, lx), is_train=True)
DLloss = modDL.get_outputs()
modDL.backward()
dlGrad = modDL.get_input_grads()
modD1.backward(dlGrad)
diffD = modD1.get_input_grads()
modG.backward(diffD)
#update encoder
nElements = batch_size
modKL.forward(mx.io.DataBatch([mx.ndarray.concat(mu,lv, dim=0)]), is_train=True)
KLloss = modKL.get_outputs()
modKL.backward()
gradKLLoss = modKL.get_input_grads()
diffG = modG.get_input_grads()
diffG = diffG[0].reshape((batch_size, Z))
modE.backward(mx.ndarray.split(gradKLLoss[0], num_outputs=2, axis=0) + [diffG])
modE.update()
pred = mx.ndarray.concat(mu,lv, dim=0)
mE.update([pred], [pred])
if mon is not None:
mon.toc_print()
t += 1
if t % show_after_every == 0:
print('epoch:', epoch, 'iter:', t, 'metric:', mACC.get(), mG.get(), mD.get(), mE.get(), KLloss[0].asnumpy(), DLloss[0].asnumpy())
mACC.reset()
mG.reset()
mD.reset()
mE.reset()
if epoch % visualize_after_every == 0:
visual(output_path +'gout'+str(epoch), outG[0].asnumpy(), activation)
visual(output_path + 'data'+str(epoch), batch.data[0].asnumpy(), activation)
if check_point and epoch % save_after_every == 0:
print('Saving...')
modG.save_params(checkpoint_path + '/%s_G-%04d.params'%(dataset, epoch))
modD.save_params(checkpoint_path + '/%s_D-%04d.params'%(dataset, epoch))
modE.save_params(checkpoint_path + '/%s_E-%04d.params'%(dataset, epoch)) | def train(dataset, nef, ndf, ngf, nc, batch_size, Z, lr, beta1, epsilon, ctx, check_point, g_dl_weight, output_path, checkpoint_path, data_path, activation,num_epoch, save_after_every, visualize_after_every, show_after_every):
'''adversarial training of the VAE
'''
#encoder
z_mu, z_lv, z = encoder(nef, Z, batch_size)
symE = mx.sym.Group([z_mu, z_lv, z])
#generator
symG = generator(ngf, nc, no_bias=True, fix_gamma=True, eps=1e-5 + 1e-12, z_dim = Z, activation=activation )
#discriminator
h = discriminator1(ndf)
dloss = discriminator2(ndf)
symD1 = h
symD2 = dloss
# ==============data==============
X_train, _ = get_data(data_path, activation)
train_iter = mx.io.NDArrayIter(X_train, batch_size=batch_size, shuffle=True)
rand_iter = RandIter(batch_size, Z)
label = mx.nd.zeros((batch_size,), ctx=ctx)
# =============module E=============
modE = mx.mod.Module(symbol=symE, data_names=('data',), label_names=None, context=ctx)
modE.bind(data_shapes=train_iter.provide_data)
modE.init_params(initializer=mx.init.Normal(0.02))
modE.init_optimizer(
optimizer='adam',
optimizer_params={
'learning_rate': lr,
'wd': 1e-6,
'beta1': beta1,
'epsilon': epsilon,
'rescale_grad': (1.0/batch_size)
})
mods = [modE]
# =============module G=============
modG = mx.mod.Module(symbol=symG, data_names=('rand',), label_names=None, context=ctx)
modG.bind(data_shapes=rand_iter.provide_data, inputs_need_grad=True)
modG.init_params(initializer=mx.init.Normal(0.02))
modG.init_optimizer(
optimizer='adam',
optimizer_params={
'learning_rate': lr,
'wd': 1e-6,
'beta1': beta1,
'epsilon': epsilon,
})
mods.append(modG)
# =============module D=============
modD1 = mx.mod.Module(symD1, label_names=[], context=ctx)
modD2 = mx.mod.Module(symD2, label_names=('label',), context=ctx)
modD = mx.mod.SequentialModule()
modD.add(modD1).add(modD2, take_labels=True, auto_wiring=True)
modD.bind(data_shapes=train_iter.provide_data,
label_shapes=[('label', (batch_size,))],
inputs_need_grad=True)
modD.init_params(initializer=mx.init.Normal(0.02))
modD.init_optimizer(
optimizer='adam',
optimizer_params={
'learning_rate': lr,
'wd': 1e-3,
'beta1': beta1,
'epsilon': epsilon,
'rescale_grad': (1.0/batch_size)
})
mods.append(modD)
# =============module DL=============
symDL = DiscriminatorLayerLoss()
modDL = mx.mod.Module(symbol=symDL, data_names=('data',), label_names=('label',), context=ctx)
modDL.bind(data_shapes=[('data', (batch_size,nef * 4,4,4))], ################################################################################################################################ fix 512 here
label_shapes=[('label', (batch_size,nef * 4,4,4))],
inputs_need_grad=True)
modDL.init_params(initializer=mx.init.Normal(0.02))
modDL.init_optimizer(
optimizer='adam',
optimizer_params={
'learning_rate': lr,
'wd': 0.,
'beta1': beta1,
'epsilon': epsilon,
'rescale_grad': (1.0/batch_size)
})
# =============module KL=============
symKL = KLDivergenceLoss()
modKL = mx.mod.Module(symbol=symKL, data_names=('data',), label_names=None, context=ctx)
modKL.bind(data_shapes=[('data', (batch_size*2,Z))],
inputs_need_grad=True)
modKL.init_params(initializer=mx.init.Normal(0.02))
modKL.init_optimizer(
optimizer='adam',
optimizer_params={
'learning_rate': lr,
'wd': 0.,
'beta1': beta1,
'epsilon': epsilon,
'rescale_grad': (1.0/batch_size)
})
mods.append(modKL)
def norm_stat(d):
return mx.nd.norm(d)/np.sqrt(d.size)
mon = mx.mon.Monitor(10, norm_stat, pattern=".*output|d1_backward_data", sort=True)
mon = None
if mon is not None:
for mod in mods:
pass
def facc(label, pred):
'''calculating prediction accuracy
'''
pred = pred.ravel()
label = label.ravel()
return ((pred > 0.5) == label).mean()
def fentropy(label, pred):
'''calculating binary cross-entropy loss
'''
pred = pred.ravel()
label = label.ravel()
return -(label*np.log(pred+1e-12) + (1.-label)*np.log(1.-pred+1e-12)).mean()
def kldivergence(label, pred):
'''calculating KL divergence loss
'''
mean, log_var = np.split(pred, 2, axis=0)
var = np.exp(log_var)
KLLoss = -0.5 * np.sum(1 + log_var - np.power(mean, 2) - var)
KLLoss = KLLoss / nElements
return KLLoss
mG = mx.metric.CustomMetric(fentropy)
mD = mx.metric.CustomMetric(fentropy)
mE = mx.metric.CustomMetric(kldivergence)
mACC = mx.metric.CustomMetric(facc)
print('Training...')
stamp = datetime.now().strftime('%Y_%m_%d-%H_%M')
# =============train===============
for epoch in range(num_epoch):
train_iter.reset()
for t, batch in enumerate(train_iter):
rbatch = rand_iter.next()
if mon is not None:
mon.tic()
modG.forward(rbatch, is_train=True)
outG = modG.get_outputs()
# update discriminator on fake
label[:] = 0
modD.forward(mx.io.DataBatch(outG, [label]), is_train=True)
modD.backward()
gradD11 = [[grad.copyto(grad.context) for grad in grads] for grads in modD1._exec_group.grad_arrays]
gradD12 = [[grad.copyto(grad.context) for grad in grads] for grads in modD2._exec_group.grad_arrays]
modD.update_metric(mD, [label])
modD.update_metric(mACC, [label])
#update discriminator on decoded
modE.forward(batch, is_train=True)
mu, lv, z = modE.get_outputs()
z = z.reshape((batch_size, Z, 1, 1))
sample = mx.io.DataBatch([z], label=None, provide_data = [('rand', (batch_size, Z, 1, 1))])
modG.forward(sample, is_train=True)
xz = modG.get_outputs()
label[:] = 0
modD.forward(mx.io.DataBatch(xz, [label]), is_train=True)
modD.backward()
#modD.update()
gradD21 = [[grad.copyto(grad.context) for grad in grads] for grads in modD1._exec_group.grad_arrays]
gradD22 = [[grad.copyto(grad.context) for grad in grads] for grads in modD2._exec_group.grad_arrays]
modD.update_metric(mD, [label])
modD.update_metric(mACC, [label])
# update discriminator on real
label[:] = 1
batch.label = [label]
modD.forward(batch, is_train=True)
lx = [out.copyto(out.context) for out in modD1.get_outputs()]
modD.backward()
for gradsr, gradsf, gradsd in zip(modD1._exec_group.grad_arrays, gradD11, gradD21):
for gradr, gradf, gradd in zip(gradsr, gradsf, gradsd):
gradr += 0.5 * (gradf + gradd)
for gradsr, gradsf, gradsd in zip(modD2._exec_group.grad_arrays, gradD12, gradD22):
for gradr, gradf, gradd in zip(gradsr, gradsf, gradsd):
gradr += 0.5 * (gradf + gradd)
modD.update()
modD.update_metric(mD, [label])
modD.update_metric(mACC, [label])
modG.forward(rbatch, is_train=True)
outG = modG.get_outputs()
label[:] = 1
modD.forward(mx.io.DataBatch(outG, [label]), is_train=True)
modD.backward()
diffD = modD1.get_input_grads()
modG.backward(diffD)
gradG1 = [[grad.copyto(grad.context) for grad in grads] for grads in modG._exec_group.grad_arrays]
mG.update([label], modD.get_outputs())
modG.forward(sample, is_train=True)
xz = modG.get_outputs()
label[:] = 1
modD.forward(mx.io.DataBatch(xz, [label]), is_train=True)
modD.backward()
diffD = modD1.get_input_grads()
modG.backward(diffD)
gradG2 = [[grad.copyto(grad.context) for grad in grads] for grads in modG._exec_group.grad_arrays]
mG.update([label], modD.get_outputs())
modG.forward(sample, is_train=True)
xz = modG.get_outputs()
modD1.forward(mx.io.DataBatch(xz, []), is_train=True)
outD1 = modD1.get_outputs()
modDL.forward(mx.io.DataBatch(outD1, lx), is_train=True)
modDL.backward()
dlGrad = modDL.get_input_grads()
modD1.backward(dlGrad)
diffD = modD1.get_input_grads()
modG.backward(diffD)
for grads, gradsG1, gradsG2 in zip(modG._exec_group.grad_arrays, gradG1, gradG2):
for grad, gradg1, gradg2 in zip(grads, gradsG1, gradsG2):
grad = g_dl_weight * grad + 0.5 * (gradg1 + gradg2)
modG.update()
mG.update([label], modD.get_outputs())
modG.forward(rbatch, is_train=True)
outG = modG.get_outputs()
label[:] = 1
modD.forward(mx.io.DataBatch(outG, [label]), is_train=True)
modD.backward()
diffD = modD1.get_input_grads()
modG.backward(diffD)
gradG1 = [[grad.copyto(grad.context) for grad in grads] for grads in modG._exec_group.grad_arrays]
mG.update([label], modD.get_outputs())
modG.forward(sample, is_train=True)
xz = modG.get_outputs()
label[:] = 1
modD.forward(mx.io.DataBatch(xz, [label]), is_train=True)
modD.backward()
diffD = modD1.get_input_grads()
modG.backward(diffD)
gradG2 = [[grad.copyto(grad.context) for grad in grads] for grads in modG._exec_group.grad_arrays]
mG.update([label], modD.get_outputs())
modG.forward(sample, is_train=True)
xz = modG.get_outputs()
modD1.forward(mx.io.DataBatch(xz, []), is_train=True)
outD1 = modD1.get_outputs()
modDL.forward(mx.io.DataBatch(outD1, lx), is_train=True)
modDL.backward()
dlGrad = modDL.get_input_grads()
modD1.backward(dlGrad)
diffD = modD1.get_input_grads()
modG.backward(diffD)
for grads, gradsG1, gradsG2 in zip(modG._exec_group.grad_arrays, gradG1, gradG2):
for grad, gradg1, gradg2 in zip(grads, gradsG1, gradsG2):
grad = g_dl_weight * grad + 0.5 * (gradg1 + gradg2)
modG.update()
mG.update([label], modD.get_outputs())
modG.forward(sample, is_train=True)
xz = modG.get_outputs()
#update generator
modD1.forward(mx.io.DataBatch(xz, []), is_train=True)
outD1 = modD1.get_outputs()
modDL.forward(mx.io.DataBatch(outD1, lx), is_train=True)
DLloss = modDL.get_outputs()
modDL.backward()
dlGrad = modDL.get_input_grads()
modD1.backward(dlGrad)
diffD = modD1.get_input_grads()
modG.backward(diffD)
#update encoder
nElements = batch_size
modKL.forward(mx.io.DataBatch([mx.ndarray.concat(mu,lv, dim=0)]), is_train=True)
KLloss = modKL.get_outputs()
modKL.backward()
gradKLLoss = modKL.get_input_grads()
diffG = modG.get_input_grads()
diffG = diffG[0].reshape((batch_size, Z))
modE.backward(mx.ndarray.split(gradKLLoss[0], num_outputs=2, axis=0) + [diffG])
modE.update()
pred = mx.ndarray.concat(mu,lv, dim=0)
mE.update([pred], [pred])
if mon is not None:
mon.toc_print()
t += 1
if t % show_after_every == 0:
print('epoch:', epoch, 'iter:', t, 'metric:', mACC.get(), mG.get(), mD.get(), mE.get(), KLloss[0].asnumpy(), DLloss[0].asnumpy())
mACC.reset()
mG.reset()
mD.reset()
mE.reset()
if epoch % visualize_after_every == 0:
visual(output_path +'gout'+str(epoch), outG[0].asnumpy(), activation)
visual(output_path + 'data'+str(epoch), batch.data[0].asnumpy(), activation)
if check_point and epoch % save_after_every == 0:
print('Saving...')
modG.save_params(checkpoint_path + '/%s_G-%04d.params'%(dataset, epoch))
modD.save_params(checkpoint_path + '/%s_D-%04d.params'%(dataset, epoch))
modE.save_params(checkpoint_path + '/%s_E-%04d.params'%(dataset, epoch)) | [
"adversarial",
"training",
"of",
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"VAE"
] | apache/incubator-mxnet | python | https://github.com/apache/incubator-mxnet/blob/1af29e9c060a4c7d60eeaacba32afdb9a7775ba7/example/vae-gan/vaegan_mxnet.py#L288-L613 | [
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train | create_and_validate_dir | Creates/Validates dir | example/vae-gan/vaegan_mxnet.py | def create_and_validate_dir(data_dir):
'''Creates/Validates dir
'''
if data_dir != "":
if not os.path.exists(data_dir):
try:
logging.info('create directory %s', data_dir)
os.makedirs(data_dir)
except OSError as exc:
if exc.errno != errno.EEXIST:
raise OSError('failed to create ' + data_dir) | def create_and_validate_dir(data_dir):
'''Creates/Validates dir
'''
if data_dir != "":
if not os.path.exists(data_dir):
try:
logging.info('create directory %s', data_dir)
os.makedirs(data_dir)
except OSError as exc:
if exc.errno != errno.EEXIST:
raise OSError('failed to create ' + data_dir) | [
"Creates",
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train | parse_args | Parse args | example/vae-gan/vaegan_mxnet.py | def parse_args():
'''Parse args
'''
parser = argparse.ArgumentParser(description='Train and Test an Adversarial Variatiional Encoder')
parser.add_argument('--train', help='train the network', action='store_true')
parser.add_argument('--test', help='test the network', action='store_true')
parser.add_argument('--save_embedding', help='saves the shape embedding of each input image', action='store_true')
parser.add_argument('--dataset', help='dataset name', default='caltech', type=str)
parser.add_argument('--activation', help='activation i.e. sigmoid or tanh', default='sigmoid', type=str)
parser.add_argument('--training_data_path', help='training data path', default='datasets/caltech101/data/images32x32', type=str)
parser.add_argument('--testing_data_path', help='testing data path', default='datasets/caltech101/test_data', type=str)
parser.add_argument('--pretrained_encoder_path', help='pretrained encoder model path', default='checkpoints32x32_sigmoid/caltech_E-0045.params', type=str)
parser.add_argument('--pretrained_generator_path', help='pretrained generator model path', default='checkpoints32x32_sigmoid/caltech_G-0045.params', type=str)
parser.add_argument('--output_path', help='output path for the generated images', default='outputs32x32_sigmoid', type=str)
parser.add_argument('--embedding_path', help='output path for the generated embeddings', default='outputs32x32_sigmoid', type=str)
parser.add_argument('--checkpoint_path', help='checkpoint saving path ', default='checkpoints32x32_sigmoid', type=str)
parser.add_argument('--nef', help='encoder filter count in the first layer', default=64, type=int)
parser.add_argument('--ndf', help='discriminator filter count in the first layer', default=64, type=int)
parser.add_argument('--ngf', help='generator filter count in the second last layer', default=64, type=int)
parser.add_argument('--nc', help='generator filter count in the last layer i.e. 1 for grayscale image, 3 for RGB image', default=1, type=int)
parser.add_argument('--batch_size', help='batch size, keep it 1 during testing', default=64, type=int)
parser.add_argument('--Z', help='embedding size', default=100, type=int)
parser.add_argument('--lr', help='learning rate', default=0.0002, type=float)
parser.add_argument('--beta1', help='beta1 for adam optimizer', default=0.5, type=float)
parser.add_argument('--epsilon', help='epsilon for adam optimizer', default=1e-5, type=float)
parser.add_argument('--g_dl_weight', help='discriminator layer loss weight', default=1e-1, type=float)
parser.add_argument('--gpu', help='gpu index', default=0, type=int)
parser.add_argument('--use_cpu', help='use cpu', action='store_true')
parser.add_argument('--num_epoch', help='number of maximum epochs ', default=45, type=int)
parser.add_argument('--save_after_every', help='save checkpoint after every this number of epochs ', default=5, type=int)
parser.add_argument('--visualize_after_every', help='save output images after every this number of epochs', default=5, type=int)
parser.add_argument('--show_after_every', help='show metrics after this number of iterations', default=10, type=int)
args = parser.parse_args()
return args | def parse_args():
'''Parse args
'''
parser = argparse.ArgumentParser(description='Train and Test an Adversarial Variatiional Encoder')
parser.add_argument('--train', help='train the network', action='store_true')
parser.add_argument('--test', help='test the network', action='store_true')
parser.add_argument('--save_embedding', help='saves the shape embedding of each input image', action='store_true')
parser.add_argument('--dataset', help='dataset name', default='caltech', type=str)
parser.add_argument('--activation', help='activation i.e. sigmoid or tanh', default='sigmoid', type=str)
parser.add_argument('--training_data_path', help='training data path', default='datasets/caltech101/data/images32x32', type=str)
parser.add_argument('--testing_data_path', help='testing data path', default='datasets/caltech101/test_data', type=str)
parser.add_argument('--pretrained_encoder_path', help='pretrained encoder model path', default='checkpoints32x32_sigmoid/caltech_E-0045.params', type=str)
parser.add_argument('--pretrained_generator_path', help='pretrained generator model path', default='checkpoints32x32_sigmoid/caltech_G-0045.params', type=str)
parser.add_argument('--output_path', help='output path for the generated images', default='outputs32x32_sigmoid', type=str)
parser.add_argument('--embedding_path', help='output path for the generated embeddings', default='outputs32x32_sigmoid', type=str)
parser.add_argument('--checkpoint_path', help='checkpoint saving path ', default='checkpoints32x32_sigmoid', type=str)
parser.add_argument('--nef', help='encoder filter count in the first layer', default=64, type=int)
parser.add_argument('--ndf', help='discriminator filter count in the first layer', default=64, type=int)
parser.add_argument('--ngf', help='generator filter count in the second last layer', default=64, type=int)
parser.add_argument('--nc', help='generator filter count in the last layer i.e. 1 for grayscale image, 3 for RGB image', default=1, type=int)
parser.add_argument('--batch_size', help='batch size, keep it 1 during testing', default=64, type=int)
parser.add_argument('--Z', help='embedding size', default=100, type=int)
parser.add_argument('--lr', help='learning rate', default=0.0002, type=float)
parser.add_argument('--beta1', help='beta1 for adam optimizer', default=0.5, type=float)
parser.add_argument('--epsilon', help='epsilon for adam optimizer', default=1e-5, type=float)
parser.add_argument('--g_dl_weight', help='discriminator layer loss weight', default=1e-1, type=float)
parser.add_argument('--gpu', help='gpu index', default=0, type=int)
parser.add_argument('--use_cpu', help='use cpu', action='store_true')
parser.add_argument('--num_epoch', help='number of maximum epochs ', default=45, type=int)
parser.add_argument('--save_after_every', help='save checkpoint after every this number of epochs ', default=5, type=int)
parser.add_argument('--visualize_after_every', help='save output images after every this number of epochs', default=5, type=int)
parser.add_argument('--show_after_every', help='show metrics after this number of iterations', default=10, type=int)
args = parser.parse_args()
return args | [
"Parse",
"args"
] | apache/incubator-mxnet | python | https://github.com/apache/incubator-mxnet/blob/1af29e9c060a4c7d60eeaacba32afdb9a7775ba7/example/vae-gan/vaegan_mxnet.py#L673-L708 | [
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train | get_rmse_log | Gets root mse between the logarithms of the prediction and the truth. | example/gluon/house_prices/kaggle_k_fold_cross_validation.py | def get_rmse_log(net, X_train, y_train):
"""Gets root mse between the logarithms of the prediction and the truth."""
num_train = X_train.shape[0]
clipped_preds = nd.clip(net(X_train), 1, float('inf'))
return np.sqrt(2 * nd.sum(square_loss(
nd.log(clipped_preds), nd.log(y_train))).asscalar() / num_train) | def get_rmse_log(net, X_train, y_train):
"""Gets root mse between the logarithms of the prediction and the truth."""
num_train = X_train.shape[0]
clipped_preds = nd.clip(net(X_train), 1, float('inf'))
return np.sqrt(2 * nd.sum(square_loss(
nd.log(clipped_preds), nd.log(y_train))).asscalar() / num_train) | [
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train | get_net | Gets a neural network. Better results are obtained with modifications. | example/gluon/house_prices/kaggle_k_fold_cross_validation.py | def get_net():
"""Gets a neural network. Better results are obtained with modifications."""
net = gluon.nn.Sequential()
with net.name_scope():
net.add(gluon.nn.Dense(50, activation="relu"))
net.add(gluon.nn.Dense(1))
net.initialize()
return net | def get_net():
"""Gets a neural network. Better results are obtained with modifications."""
net = gluon.nn.Sequential()
with net.name_scope():
net.add(gluon.nn.Dense(50, activation="relu"))
net.add(gluon.nn.Dense(1))
net.initialize()
return net | [
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train | train | Trains the model. | example/gluon/house_prices/kaggle_k_fold_cross_validation.py | def train(net, X_train, y_train, epochs, verbose_epoch, learning_rate,
weight_decay, batch_size):
"""Trains the model."""
dataset_train = gluon.data.ArrayDataset(X_train, y_train)
data_iter_train = gluon.data.DataLoader(dataset_train, batch_size,
shuffle=True)
trainer = gluon.Trainer(net.collect_params(), 'adam',
{'learning_rate': learning_rate,
'wd': weight_decay})
net.initialize(force_reinit=True)
for epoch in range(epochs):
for data, label in data_iter_train:
with autograd.record():
output = net(data)
loss = square_loss(output, label)
loss.backward()
trainer.step(batch_size)
avg_loss = get_rmse_log(net, X_train, y_train)
if epoch > verbose_epoch:
print("Epoch %d, train loss: %f" % (epoch, avg_loss))
return avg_loss | def train(net, X_train, y_train, epochs, verbose_epoch, learning_rate,
weight_decay, batch_size):
"""Trains the model."""
dataset_train = gluon.data.ArrayDataset(X_train, y_train)
data_iter_train = gluon.data.DataLoader(dataset_train, batch_size,
shuffle=True)
trainer = gluon.Trainer(net.collect_params(), 'adam',
{'learning_rate': learning_rate,
'wd': weight_decay})
net.initialize(force_reinit=True)
for epoch in range(epochs):
for data, label in data_iter_train:
with autograd.record():
output = net(data)
loss = square_loss(output, label)
loss.backward()
trainer.step(batch_size)
avg_loss = get_rmse_log(net, X_train, y_train)
if epoch > verbose_epoch:
print("Epoch %d, train loss: %f" % (epoch, avg_loss))
return avg_loss | [
"Trains",
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] | apache/incubator-mxnet | python | https://github.com/apache/incubator-mxnet/blob/1af29e9c060a4c7d60eeaacba32afdb9a7775ba7/example/gluon/house_prices/kaggle_k_fold_cross_validation.py#L82-L102 | [
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train | k_fold_cross_valid | Conducts k-fold cross validation for the model. | example/gluon/house_prices/kaggle_k_fold_cross_validation.py | def k_fold_cross_valid(k, epochs, verbose_epoch, X_train, y_train,
learning_rate, weight_decay, batch_size):
"""Conducts k-fold cross validation for the model."""
assert k > 1
fold_size = X_train.shape[0] // k
train_loss_sum = 0.0
test_loss_sum = 0.0
for test_idx in range(k):
X_val_test = X_train[test_idx * fold_size: (test_idx + 1) *
fold_size, :]
y_val_test = y_train[test_idx * fold_size: (test_idx + 1) * fold_size]
val_train_defined = False
for i in range(k):
if i != test_idx:
X_cur_fold = X_train[i * fold_size: (i + 1) * fold_size, :]
y_cur_fold = y_train[i * fold_size: (i + 1) * fold_size]
if not val_train_defined:
X_val_train = X_cur_fold
y_val_train = y_cur_fold
val_train_defined = True
else:
X_val_train = nd.concat(X_val_train, X_cur_fold, dim=0)
y_val_train = nd.concat(y_val_train, y_cur_fold, dim=0)
net = get_net()
train_loss = train(net, X_val_train, y_val_train, epochs, verbose_epoch,
learning_rate, weight_decay, batch_size)
train_loss_sum += train_loss
test_loss = get_rmse_log(net, X_val_test, y_val_test)
print("Test loss: %f" % test_loss)
test_loss_sum += test_loss
return train_loss_sum / k, test_loss_sum / k | def k_fold_cross_valid(k, epochs, verbose_epoch, X_train, y_train,
learning_rate, weight_decay, batch_size):
"""Conducts k-fold cross validation for the model."""
assert k > 1
fold_size = X_train.shape[0] // k
train_loss_sum = 0.0
test_loss_sum = 0.0
for test_idx in range(k):
X_val_test = X_train[test_idx * fold_size: (test_idx + 1) *
fold_size, :]
y_val_test = y_train[test_idx * fold_size: (test_idx + 1) * fold_size]
val_train_defined = False
for i in range(k):
if i != test_idx:
X_cur_fold = X_train[i * fold_size: (i + 1) * fold_size, :]
y_cur_fold = y_train[i * fold_size: (i + 1) * fold_size]
if not val_train_defined:
X_val_train = X_cur_fold
y_val_train = y_cur_fold
val_train_defined = True
else:
X_val_train = nd.concat(X_val_train, X_cur_fold, dim=0)
y_val_train = nd.concat(y_val_train, y_cur_fold, dim=0)
net = get_net()
train_loss = train(net, X_val_train, y_val_train, epochs, verbose_epoch,
learning_rate, weight_decay, batch_size)
train_loss_sum += train_loss
test_loss = get_rmse_log(net, X_val_test, y_val_test)
print("Test loss: %f" % test_loss)
test_loss_sum += test_loss
return train_loss_sum / k, test_loss_sum / k | [
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train | learn | Trains the model and predicts on the test data set. | example/gluon/house_prices/kaggle_k_fold_cross_validation.py | def learn(epochs, verbose_epoch, X_train, y_train, test, learning_rate,
weight_decay, batch_size):
"""Trains the model and predicts on the test data set."""
net = get_net()
_ = train(net, X_train, y_train, epochs, verbose_epoch, learning_rate,
weight_decay, batch_size)
preds = net(X_test).asnumpy()
test['SalePrice'] = pd.Series(preds.reshape(1, -1)[0])
submission = pd.concat([test['Id'], test['SalePrice']], axis=1)
submission.to_csv('submission.csv', index=False) | def learn(epochs, verbose_epoch, X_train, y_train, test, learning_rate,
weight_decay, batch_size):
"""Trains the model and predicts on the test data set."""
net = get_net()
_ = train(net, X_train, y_train, epochs, verbose_epoch, learning_rate,
weight_decay, batch_size)
preds = net(X_test).asnumpy()
test['SalePrice'] = pd.Series(preds.reshape(1, -1)[0])
submission = pd.concat([test['Id'], test['SalePrice']], axis=1)
submission.to_csv('submission.csv', index=False) | [
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train | capsnet | Create CapsNet | example/capsnet/capsulenet.py | def capsnet(batch_size, n_class, num_routing, recon_loss_weight):
"""Create CapsNet"""
# data.shape = [batch_size, 1, 28, 28]
data = mx.sym.Variable('data')
input_shape = (1, 28, 28)
# Conv2D layer
# net.shape = [batch_size, 256, 20, 20]
conv1 = mx.sym.Convolution(data=data,
num_filter=256,
kernel=(9, 9),
layout='NCHW',
name='conv1')
conv1 = mx.sym.Activation(data=conv1, act_type='relu', name='conv1_act')
# net.shape = [batch_size, 256, 6, 6]
primarycaps = primary_caps(data=conv1,
dim_vector=8,
n_channels=32,
kernel=(9, 9),
strides=[2, 2],
name='primarycaps')
primarycaps.infer_shape(data=(batch_size, 1, 28, 28))
# CapsuleLayer
kernel_initializer = mx.init.Xavier(rnd_type='uniform', factor_type='avg', magnitude=3)
bias_initializer = mx.init.Zero()
digitcaps = CapsuleLayer(num_capsule=10,
dim_vector=16,
batch_size=batch_size,
kernel_initializer=kernel_initializer,
bias_initializer=bias_initializer,
num_routing=num_routing)(primarycaps)
# out_caps : (batch_size, 10)
out_caps = mx.sym.sqrt(data=mx.sym.sum(mx.sym.square(digitcaps), 2))
out_caps.infer_shape(data=(batch_size, 1, 28, 28))
y = mx.sym.Variable('softmax_label', shape=(batch_size,))
y_onehot = mx.sym.one_hot(y, n_class)
y_reshaped = mx.sym.Reshape(data=y_onehot, shape=(batch_size, -4, n_class, -1))
y_reshaped.infer_shape(softmax_label=(batch_size,))
# inputs_masked : (batch_size, 16)
inputs_masked = mx.sym.linalg_gemm2(y_reshaped, digitcaps, transpose_a=True)
inputs_masked = mx.sym.Reshape(data=inputs_masked, shape=(-3, 0))
x_recon = mx.sym.FullyConnected(data=inputs_masked, num_hidden=512, name='x_recon')
x_recon = mx.sym.Activation(data=x_recon, act_type='relu', name='x_recon_act')
x_recon = mx.sym.FullyConnected(data=x_recon, num_hidden=1024, name='x_recon2')
x_recon = mx.sym.Activation(data=x_recon, act_type='relu', name='x_recon_act2')
x_recon = mx.sym.FullyConnected(data=x_recon, num_hidden=np.prod(input_shape), name='x_recon3')
x_recon = mx.sym.Activation(data=x_recon, act_type='sigmoid', name='x_recon_act3')
data_flatten = mx.sym.flatten(data=data)
squared_error = mx.sym.square(x_recon-data_flatten)
recon_error = mx.sym.mean(squared_error)
recon_error_stopped = recon_error
recon_error_stopped = mx.sym.BlockGrad(recon_error_stopped)
loss = mx.symbol.MakeLoss((1-recon_loss_weight)*margin_loss(y_onehot, out_caps)+recon_loss_weight*recon_error)
out_caps_blocked = out_caps
out_caps_blocked = mx.sym.BlockGrad(out_caps_blocked)
return mx.sym.Group([out_caps_blocked, loss, recon_error_stopped]) | def capsnet(batch_size, n_class, num_routing, recon_loss_weight):
"""Create CapsNet"""
# data.shape = [batch_size, 1, 28, 28]
data = mx.sym.Variable('data')
input_shape = (1, 28, 28)
# Conv2D layer
# net.shape = [batch_size, 256, 20, 20]
conv1 = mx.sym.Convolution(data=data,
num_filter=256,
kernel=(9, 9),
layout='NCHW',
name='conv1')
conv1 = mx.sym.Activation(data=conv1, act_type='relu', name='conv1_act')
# net.shape = [batch_size, 256, 6, 6]
primarycaps = primary_caps(data=conv1,
dim_vector=8,
n_channels=32,
kernel=(9, 9),
strides=[2, 2],
name='primarycaps')
primarycaps.infer_shape(data=(batch_size, 1, 28, 28))
# CapsuleLayer
kernel_initializer = mx.init.Xavier(rnd_type='uniform', factor_type='avg', magnitude=3)
bias_initializer = mx.init.Zero()
digitcaps = CapsuleLayer(num_capsule=10,
dim_vector=16,
batch_size=batch_size,
kernel_initializer=kernel_initializer,
bias_initializer=bias_initializer,
num_routing=num_routing)(primarycaps)
# out_caps : (batch_size, 10)
out_caps = mx.sym.sqrt(data=mx.sym.sum(mx.sym.square(digitcaps), 2))
out_caps.infer_shape(data=(batch_size, 1, 28, 28))
y = mx.sym.Variable('softmax_label', shape=(batch_size,))
y_onehot = mx.sym.one_hot(y, n_class)
y_reshaped = mx.sym.Reshape(data=y_onehot, shape=(batch_size, -4, n_class, -1))
y_reshaped.infer_shape(softmax_label=(batch_size,))
# inputs_masked : (batch_size, 16)
inputs_masked = mx.sym.linalg_gemm2(y_reshaped, digitcaps, transpose_a=True)
inputs_masked = mx.sym.Reshape(data=inputs_masked, shape=(-3, 0))
x_recon = mx.sym.FullyConnected(data=inputs_masked, num_hidden=512, name='x_recon')
x_recon = mx.sym.Activation(data=x_recon, act_type='relu', name='x_recon_act')
x_recon = mx.sym.FullyConnected(data=x_recon, num_hidden=1024, name='x_recon2')
x_recon = mx.sym.Activation(data=x_recon, act_type='relu', name='x_recon_act2')
x_recon = mx.sym.FullyConnected(data=x_recon, num_hidden=np.prod(input_shape), name='x_recon3')
x_recon = mx.sym.Activation(data=x_recon, act_type='sigmoid', name='x_recon_act3')
data_flatten = mx.sym.flatten(data=data)
squared_error = mx.sym.square(x_recon-data_flatten)
recon_error = mx.sym.mean(squared_error)
recon_error_stopped = recon_error
recon_error_stopped = mx.sym.BlockGrad(recon_error_stopped)
loss = mx.symbol.MakeLoss((1-recon_loss_weight)*margin_loss(y_onehot, out_caps)+recon_loss_weight*recon_error)
out_caps_blocked = out_caps
out_caps_blocked = mx.sym.BlockGrad(out_caps_blocked)
return mx.sym.Group([out_caps_blocked, loss, recon_error_stopped]) | [
"Create",
"CapsNet"
] | apache/incubator-mxnet | python | https://github.com/apache/incubator-mxnet/blob/1af29e9c060a4c7d60eeaacba32afdb9a7775ba7/example/capsnet/capsulenet.py#L39-L100 | [
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train | do_training | Perform CapsNet training | example/capsnet/capsulenet.py | def do_training(num_epoch, optimizer, kvstore, learning_rate, model_prefix, decay):
"""Perform CapsNet training"""
summary_writer = SummaryWriter(args.tblog_dir)
lr_scheduler = SimpleLRScheduler(learning_rate)
optimizer_params = {'lr_scheduler': lr_scheduler}
module.init_params()
module.init_optimizer(kvstore=kvstore,
optimizer=optimizer,
optimizer_params=optimizer_params)
n_epoch = 0
while True:
if n_epoch >= num_epoch:
break
train_iter.reset()
val_iter.reset()
loss_metric.reset()
for n_batch, data_batch in enumerate(train_iter):
module.forward_backward(data_batch)
module.update()
module.update_metric(loss_metric, data_batch.label)
loss_metric.get_batch_log(n_batch)
train_acc, train_loss, train_recon_err = loss_metric.get_name_value()
loss_metric.reset()
for n_batch, data_batch in enumerate(val_iter):
module.forward(data_batch)
module.update_metric(loss_metric, data_batch.label)
loss_metric.get_batch_log(n_batch)
val_acc, val_loss, val_recon_err = loss_metric.get_name_value()
summary_writer.add_scalar('train_acc', train_acc, n_epoch)
summary_writer.add_scalar('train_loss', train_loss, n_epoch)
summary_writer.add_scalar('train_recon_err', train_recon_err, n_epoch)
summary_writer.add_scalar('val_acc', val_acc, n_epoch)
summary_writer.add_scalar('val_loss', val_loss, n_epoch)
summary_writer.add_scalar('val_recon_err', val_recon_err, n_epoch)
print('Epoch[%d] train acc: %.4f loss: %.6f recon_err: %.6f' % (n_epoch, train_acc, train_loss,
train_recon_err))
print('Epoch[%d] val acc: %.4f loss: %.6f recon_err: %.6f' % (n_epoch, val_acc, val_loss, val_recon_err))
print('SAVE CHECKPOINT')
module.save_checkpoint(prefix=model_prefix, epoch=n_epoch)
n_epoch += 1
lr_scheduler.learning_rate = learning_rate * (decay ** n_epoch) | def do_training(num_epoch, optimizer, kvstore, learning_rate, model_prefix, decay):
"""Perform CapsNet training"""
summary_writer = SummaryWriter(args.tblog_dir)
lr_scheduler = SimpleLRScheduler(learning_rate)
optimizer_params = {'lr_scheduler': lr_scheduler}
module.init_params()
module.init_optimizer(kvstore=kvstore,
optimizer=optimizer,
optimizer_params=optimizer_params)
n_epoch = 0
while True:
if n_epoch >= num_epoch:
break
train_iter.reset()
val_iter.reset()
loss_metric.reset()
for n_batch, data_batch in enumerate(train_iter):
module.forward_backward(data_batch)
module.update()
module.update_metric(loss_metric, data_batch.label)
loss_metric.get_batch_log(n_batch)
train_acc, train_loss, train_recon_err = loss_metric.get_name_value()
loss_metric.reset()
for n_batch, data_batch in enumerate(val_iter):
module.forward(data_batch)
module.update_metric(loss_metric, data_batch.label)
loss_metric.get_batch_log(n_batch)
val_acc, val_loss, val_recon_err = loss_metric.get_name_value()
summary_writer.add_scalar('train_acc', train_acc, n_epoch)
summary_writer.add_scalar('train_loss', train_loss, n_epoch)
summary_writer.add_scalar('train_recon_err', train_recon_err, n_epoch)
summary_writer.add_scalar('val_acc', val_acc, n_epoch)
summary_writer.add_scalar('val_loss', val_loss, n_epoch)
summary_writer.add_scalar('val_recon_err', val_recon_err, n_epoch)
print('Epoch[%d] train acc: %.4f loss: %.6f recon_err: %.6f' % (n_epoch, train_acc, train_loss,
train_recon_err))
print('Epoch[%d] val acc: %.4f loss: %.6f recon_err: %.6f' % (n_epoch, val_acc, val_loss, val_recon_err))
print('SAVE CHECKPOINT')
module.save_checkpoint(prefix=model_prefix, epoch=n_epoch)
n_epoch += 1
lr_scheduler.learning_rate = learning_rate * (decay ** n_epoch) | [
"Perform",
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] | apache/incubator-mxnet | python | https://github.com/apache/incubator-mxnet/blob/1af29e9c060a4c7d60eeaacba32afdb9a7775ba7/example/capsnet/capsulenet.py#L195-L238 | [
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train | _shuffle | Shuffle the data. | example/capsnet/capsulenet.py | def _shuffle(data, idx):
"""Shuffle the data."""
shuffle_data = []
for idx_k, idx_v in data:
shuffle_data.append((idx_k, mx.ndarray.array(idx_v.asnumpy()[idx], idx_v.context)))
return shuffle_data | def _shuffle(data, idx):
"""Shuffle the data."""
shuffle_data = []
for idx_k, idx_v in data:
shuffle_data.append((idx_k, mx.ndarray.array(idx_v.asnumpy()[idx], idx_v.context)))
return shuffle_data | [
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train | LossMetric.update | Update the hyper-parameters and loss of CapsNet | example/capsnet/capsulenet.py | def update(self, labels, preds):
"""Update the hyper-parameters and loss of CapsNet"""
batch_sum_metric = 0
batch_num_inst = 0
for label, pred_outcaps in zip(labels[0], preds[0]):
label_np = int(label.asnumpy())
pred_label = int(np.argmax(pred_outcaps.asnumpy()))
batch_sum_metric += int(label_np == pred_label)
batch_num_inst += 1
batch_loss = preds[1].asnumpy()
recon_loss = preds[2].asnumpy()
self.sum_metric += batch_sum_metric
self.num_inst += batch_num_inst
self.loss += batch_loss
self.recon_loss += recon_loss
self.batch_sum_metric = batch_sum_metric
self.batch_num_inst = batch_num_inst
self.batch_loss = batch_loss
self.n_batch += 1 | def update(self, labels, preds):
"""Update the hyper-parameters and loss of CapsNet"""
batch_sum_metric = 0
batch_num_inst = 0
for label, pred_outcaps in zip(labels[0], preds[0]):
label_np = int(label.asnumpy())
pred_label = int(np.argmax(pred_outcaps.asnumpy()))
batch_sum_metric += int(label_np == pred_label)
batch_num_inst += 1
batch_loss = preds[1].asnumpy()
recon_loss = preds[2].asnumpy()
self.sum_metric += batch_sum_metric
self.num_inst += batch_num_inst
self.loss += batch_loss
self.recon_loss += recon_loss
self.batch_sum_metric = batch_sum_metric
self.batch_num_inst = batch_num_inst
self.batch_loss = batch_loss
self.n_batch += 1 | [
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train | MNISTCustomIter.reset | Reset class MNISTCustomIter(mx.io.NDArrayIter): | example/capsnet/capsulenet.py | def reset(self):
"""Reset class MNISTCustomIter(mx.io.NDArrayIter):"""
# shuffle data
if self.is_train:
np.random.shuffle(self.idx)
self.data = _shuffle(self.data, self.idx)
self.label = _shuffle(self.label, self.idx)
if self.last_batch_handle == 'roll_over' and self.cursor > self.num_data:
self.cursor = -self.batch_size + (self.cursor % self.num_data) % self.batch_size
else:
self.cursor = -self.batch_size | def reset(self):
"""Reset class MNISTCustomIter(mx.io.NDArrayIter):"""
# shuffle data
if self.is_train:
np.random.shuffle(self.idx)
self.data = _shuffle(self.data, self.idx)
self.label = _shuffle(self.label, self.idx)
if self.last_batch_handle == 'roll_over' and self.cursor > self.num_data:
self.cursor = -self.batch_size + (self.cursor % self.num_data) % self.batch_size
else:
self.cursor = -self.batch_size | [
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train | MNISTCustomIter.next | Generate next of iterator | example/capsnet/capsulenet.py | def next(self):
"""Generate next of iterator"""
if self.iter_next():
if self.is_train:
data_raw_list = self.getdata()
data_shifted = []
for data_raw in data_raw_list[0]:
data_shifted.append(random_shift(data_raw.asnumpy(), 0.1, 0.1))
return mx.io.DataBatch(data=[mx.nd.array(data_shifted)], label=self.getlabel(),
pad=self.getpad(), index=None)
else:
return mx.io.DataBatch(data=self.getdata(), label=self.getlabel(), pad=self.getpad(), index=None)
else:
raise StopIteration | def next(self):
"""Generate next of iterator"""
if self.iter_next():
if self.is_train:
data_raw_list = self.getdata()
data_shifted = []
for data_raw in data_raw_list[0]:
data_shifted.append(random_shift(data_raw.asnumpy(), 0.1, 0.1))
return mx.io.DataBatch(data=[mx.nd.array(data_shifted)], label=self.getlabel(),
pad=self.getpad(), index=None)
else:
return mx.io.DataBatch(data=self.getdata(), label=self.getlabel(), pad=self.getpad(), index=None)
else:
raise StopIteration | [
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] | apache/incubator-mxnet | python | https://github.com/apache/incubator-mxnet/blob/1af29e9c060a4c7d60eeaacba32afdb9a7775ba7/example/capsnet/capsulenet.py#L304-L318 | [
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train | AttrScope.get | Get the attribute dict given the attribute set by the symbol.
Parameters
----------
attr : dict of string to string
The attribute passed in by user during symbol creation.
Returns
-------
attr : dict of string to string
Updated attributes to add other scope related attributes. | python/mxnet/attribute.py | def get(self, attr):
"""
Get the attribute dict given the attribute set by the symbol.
Parameters
----------
attr : dict of string to string
The attribute passed in by user during symbol creation.
Returns
-------
attr : dict of string to string
Updated attributes to add other scope related attributes.
"""
if self._attr:
ret = self._attr.copy()
if attr:
ret.update(attr)
return ret
else:
return attr if attr else {} | def get(self, attr):
"""
Get the attribute dict given the attribute set by the symbol.
Parameters
----------
attr : dict of string to string
The attribute passed in by user during symbol creation.
Returns
-------
attr : dict of string to string
Updated attributes to add other scope related attributes.
"""
if self._attr:
ret = self._attr.copy()
if attr:
ret.update(attr)
return ret
else:
return attr if attr else {} | [
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train | _create_sparse_kvstore | Create kvstore assuming some parameters' storage types are row_sparse.
Parameters
----------
kvstore : KVStore or str
The kvstore.
Returns
-------
kvstore : KVStore
update_on_kvstore : bool. Always True. | python/mxnet/model.py | def _create_sparse_kvstore(kvstore):
"""Create kvstore assuming some parameters' storage types are row_sparse.
Parameters
----------
kvstore : KVStore or str
The kvstore.
Returns
-------
kvstore : KVStore
update_on_kvstore : bool. Always True.
"""
# always update on kvstore
update_on_kvstore = True
if isinstance(kvstore, kvs.KVStore):
kv = kvstore
elif isinstance(kvstore, str):
kv = kvs.create(kvstore)
else:
raise TypeError("Cannot create '%s' KVStore with row_sparse parameters. "
"The type must be KVStore or str." % kvstore)
return (kv, update_on_kvstore) | def _create_sparse_kvstore(kvstore):
"""Create kvstore assuming some parameters' storage types are row_sparse.
Parameters
----------
kvstore : KVStore or str
The kvstore.
Returns
-------
kvstore : KVStore
update_on_kvstore : bool. Always True.
"""
# always update on kvstore
update_on_kvstore = True
if isinstance(kvstore, kvs.KVStore):
kv = kvstore
elif isinstance(kvstore, str):
kv = kvs.create(kvstore)
else:
raise TypeError("Cannot create '%s' KVStore with row_sparse parameters. "
"The type must be KVStore or str." % kvstore)
return (kv, update_on_kvstore) | [
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train | _create_kvstore | Create kvstore
This function select and create a proper kvstore if given the kvstore type.
Parameters
----------
kvstore : KVStore or str
The kvstore.
num_device : int
The number of devices
arg_params : dict of str to `NDArray`.
Model parameter, dict of name to `NDArray` of net's weights. | python/mxnet/model.py | def _create_kvstore(kvstore, num_device, arg_params):
"""Create kvstore
This function select and create a proper kvstore if given the kvstore type.
Parameters
----------
kvstore : KVStore or str
The kvstore.
num_device : int
The number of devices
arg_params : dict of str to `NDArray`.
Model parameter, dict of name to `NDArray` of net's weights.
"""
update_on_kvstore = bool(int(os.getenv('MXNET_UPDATE_ON_KVSTORE', "1")))
if kvstore is None:
kv = None
elif isinstance(kvstore, kvs.KVStore):
kv = kvstore
elif isinstance(kvstore, str):
# create kvstore using the string type
if num_device == 1 and 'dist' not in kvstore:
# no need to use kv for single device and single machine
kv = None
else:
kv = kvs.create(kvstore)
if kvstore == 'local':
# automatically select a proper local
max_size = max(np.prod(param.shape) for param in
arg_params.values())
if max_size > 1024 * 1024 * 16:
update_on_kvstore = False
else:
raise TypeError('kvstore must be KVStore, str or None')
if kv is None:
update_on_kvstore = False
return (kv, update_on_kvstore) | def _create_kvstore(kvstore, num_device, arg_params):
"""Create kvstore
This function select and create a proper kvstore if given the kvstore type.
Parameters
----------
kvstore : KVStore or str
The kvstore.
num_device : int
The number of devices
arg_params : dict of str to `NDArray`.
Model parameter, dict of name to `NDArray` of net's weights.
"""
update_on_kvstore = bool(int(os.getenv('MXNET_UPDATE_ON_KVSTORE', "1")))
if kvstore is None:
kv = None
elif isinstance(kvstore, kvs.KVStore):
kv = kvstore
elif isinstance(kvstore, str):
# create kvstore using the string type
if num_device == 1 and 'dist' not in kvstore:
# no need to use kv for single device and single machine
kv = None
else:
kv = kvs.create(kvstore)
if kvstore == 'local':
# automatically select a proper local
max_size = max(np.prod(param.shape) for param in
arg_params.values())
if max_size > 1024 * 1024 * 16:
update_on_kvstore = False
else:
raise TypeError('kvstore must be KVStore, str or None')
if kv is None:
update_on_kvstore = False
return (kv, update_on_kvstore) | [
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train | _initialize_kvstore | Initialize kvstore | python/mxnet/model.py | def _initialize_kvstore(kvstore, param_arrays, arg_params, param_names, update_on_kvstore):
"""Initialize kvstore"""
for idx, param_on_devs in enumerate(param_arrays):
name = param_names[idx]
kvstore.init(name, arg_params[name])
if update_on_kvstore:
kvstore.pull(name, param_on_devs, priority=-idx) | def _initialize_kvstore(kvstore, param_arrays, arg_params, param_names, update_on_kvstore):
"""Initialize kvstore"""
for idx, param_on_devs in enumerate(param_arrays):
name = param_names[idx]
kvstore.init(name, arg_params[name])
if update_on_kvstore:
kvstore.pull(name, param_on_devs, priority=-idx) | [
"Initialize",
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train | _update_params_on_kvstore_nccl | Perform update of param_arrays from grad_arrays on NCCL kvstore. | python/mxnet/model.py | def _update_params_on_kvstore_nccl(param_arrays, grad_arrays, kvstore, param_names):
"""Perform update of param_arrays from grad_arrays on NCCL kvstore."""
valid_indices = [index for index, grad_list in
enumerate(grad_arrays) if grad_list[0] is not None]
valid_grad_arrays = [grad_arrays[i] for i in valid_indices]
valid_param_arrays = [param_arrays[i] for i in valid_indices]
valid_param_names = [param_names[i] for i in valid_indices]
size = len(valid_grad_arrays)
start = 0
# Use aggregation by default only with NCCL
default_batch = '16'
batch = int(os.getenv('MXNET_UPDATE_AGGREGATION_SIZE', default_batch))
while start < size:
end = start + batch if start + batch < size else size
# push gradient, priority is negative index
kvstore.push(valid_param_names[start:end], valid_grad_arrays[start:end], priority=-start)
# pull back the weights
kvstore.pull(valid_param_names[start:end], valid_param_arrays[start:end], priority=-start)
start = end | def _update_params_on_kvstore_nccl(param_arrays, grad_arrays, kvstore, param_names):
"""Perform update of param_arrays from grad_arrays on NCCL kvstore."""
valid_indices = [index for index, grad_list in
enumerate(grad_arrays) if grad_list[0] is not None]
valid_grad_arrays = [grad_arrays[i] for i in valid_indices]
valid_param_arrays = [param_arrays[i] for i in valid_indices]
valid_param_names = [param_names[i] for i in valid_indices]
size = len(valid_grad_arrays)
start = 0
# Use aggregation by default only with NCCL
default_batch = '16'
batch = int(os.getenv('MXNET_UPDATE_AGGREGATION_SIZE', default_batch))
while start < size:
end = start + batch if start + batch < size else size
# push gradient, priority is negative index
kvstore.push(valid_param_names[start:end], valid_grad_arrays[start:end], priority=-start)
# pull back the weights
kvstore.pull(valid_param_names[start:end], valid_param_arrays[start:end], priority=-start)
start = end | [
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train | _update_params_on_kvstore | Perform update of param_arrays from grad_arrays on kvstore. | python/mxnet/model.py | def _update_params_on_kvstore(param_arrays, grad_arrays, kvstore, param_names):
"""Perform update of param_arrays from grad_arrays on kvstore."""
for index, pair in enumerate(zip(param_arrays, grad_arrays)):
arg_list, grad_list = pair
if grad_list[0] is None:
continue
name = param_names[index]
# push gradient, priority is negative index
kvstore.push(name, grad_list, priority=-index)
# pull back the weights
kvstore.pull(name, arg_list, priority=-index) | def _update_params_on_kvstore(param_arrays, grad_arrays, kvstore, param_names):
"""Perform update of param_arrays from grad_arrays on kvstore."""
for index, pair in enumerate(zip(param_arrays, grad_arrays)):
arg_list, grad_list = pair
if grad_list[0] is None:
continue
name = param_names[index]
# push gradient, priority is negative index
kvstore.push(name, grad_list, priority=-index)
# pull back the weights
kvstore.pull(name, arg_list, priority=-index) | [
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train | _update_params | Perform update of param_arrays from grad_arrays not on kvstore. | python/mxnet/model.py | def _update_params(param_arrays, grad_arrays, updater, num_device,
kvstore=None, param_names=None):
"""Perform update of param_arrays from grad_arrays not on kvstore."""
updates = [[] for _ in range(num_device)]
for i, pair in enumerate(zip(param_arrays, grad_arrays)):
arg_list, grad_list = pair
if grad_list[0] is None:
continue
index = i
if kvstore:
name = param_names[index]
# push gradient, priority is negative index
kvstore.push(name, grad_list, priority=-index)
# pull back the sum gradients, to the same locations.
kvstore.pull(name, grad_list, priority=-index)
for k, p in enumerate(zip(arg_list, grad_list)):
# faked an index here, to make optimizer create diff
# state for the same index but on diff devs, TODO(mli)
# use a better solution later
w, g = p
updates[k].append((index*num_device+k, g, w))
for dev_updates in updates:
# update params if param_arrays and grad_arrays are not empty
if dev_updates:
i, w, g = zip(*dev_updates)
updater(i, w, g) | def _update_params(param_arrays, grad_arrays, updater, num_device,
kvstore=None, param_names=None):
"""Perform update of param_arrays from grad_arrays not on kvstore."""
updates = [[] for _ in range(num_device)]
for i, pair in enumerate(zip(param_arrays, grad_arrays)):
arg_list, grad_list = pair
if grad_list[0] is None:
continue
index = i
if kvstore:
name = param_names[index]
# push gradient, priority is negative index
kvstore.push(name, grad_list, priority=-index)
# pull back the sum gradients, to the same locations.
kvstore.pull(name, grad_list, priority=-index)
for k, p in enumerate(zip(arg_list, grad_list)):
# faked an index here, to make optimizer create diff
# state for the same index but on diff devs, TODO(mli)
# use a better solution later
w, g = p
updates[k].append((index*num_device+k, g, w))
for dev_updates in updates:
# update params if param_arrays and grad_arrays are not empty
if dev_updates:
i, w, g = zip(*dev_updates)
updater(i, w, g) | [
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train | _multiple_callbacks | Sends args and kwargs to any configured callbacks.
This handles the cases where the 'callbacks' variable
is ``None``, a single function, or a list. | python/mxnet/model.py | def _multiple_callbacks(callbacks, *args, **kwargs):
"""Sends args and kwargs to any configured callbacks.
This handles the cases where the 'callbacks' variable
is ``None``, a single function, or a list.
"""
if isinstance(callbacks, list):
for cb in callbacks:
cb(*args, **kwargs)
return
if callbacks:
callbacks(*args, **kwargs) | def _multiple_callbacks(callbacks, *args, **kwargs):
"""Sends args and kwargs to any configured callbacks.
This handles the cases where the 'callbacks' variable
is ``None``, a single function, or a list.
"""
if isinstance(callbacks, list):
for cb in callbacks:
cb(*args, **kwargs)
return
if callbacks:
callbacks(*args, **kwargs) | [
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train | _train_multi_device | Internal training function on multiple devices.
This function will also work for single device as well.
Parameters
----------
symbol : Symbol
The network configuration.
ctx : list of Context
The training devices.
arg_names: list of str
Name of all arguments of the network.
param_names: list of str
Name of all trainable parameters of the network.
aux_names: list of str
Name of all auxiliary states of the network.
arg_params : dict of str to NDArray
Model parameter, dict of name to NDArray of net's weights.
aux_params : dict of str to NDArray
Model parameter, dict of name to NDArray of net's auxiliary states.
begin_epoch : int
The begining training epoch.
end_epoch : int
The end training epoch.
epoch_size : int, optional
Number of batches in a epoch. In default, it is set to
``ceil(num_train_examples / batch_size)``.
optimizer : Optimizer
The optimization algorithm
train_data : DataIter
Training data iterator.
eval_data : DataIter
Validation data iterator.
eval_metric : EvalMetric
An evaluation function or a list of evaluation functions.
epoch_end_callback : callable(epoch, symbol, arg_params, aux_states)
A callback that is invoked at end of each epoch.
This can be used to checkpoint model each epoch.
batch_end_callback : callable(BatchEndParams)
A callback that is invoked at end of each batch.
This can be used to measure speed, get result from evaluation metric. etc.
kvstore : KVStore
The KVStore.
update_on_kvstore : bool
Whether or not perform weight updating on kvstore.
logger : logging logger
When not specified, default logger will be used.
work_load_list : list of float or int, optional
The list of work load for different devices,
in the same order as ``ctx``.
monitor : Monitor, optional
Monitor installed to executor,
for monitoring outputs, weights, and gradients for debugging.
Notes
-----
- This function will inplace update the NDArrays in `arg_params` and `aux_states`. | python/mxnet/model.py | def _train_multi_device(symbol, ctx, arg_names, param_names, aux_names,
arg_params, aux_params,
begin_epoch, end_epoch, epoch_size, optimizer,
kvstore, update_on_kvstore,
train_data, eval_data=None, eval_metric=None,
epoch_end_callback=None, batch_end_callback=None,
logger=None, work_load_list=None, monitor=None,
eval_end_callback=None,
eval_batch_end_callback=None, sym_gen=None):
"""Internal training function on multiple devices.
This function will also work for single device as well.
Parameters
----------
symbol : Symbol
The network configuration.
ctx : list of Context
The training devices.
arg_names: list of str
Name of all arguments of the network.
param_names: list of str
Name of all trainable parameters of the network.
aux_names: list of str
Name of all auxiliary states of the network.
arg_params : dict of str to NDArray
Model parameter, dict of name to NDArray of net's weights.
aux_params : dict of str to NDArray
Model parameter, dict of name to NDArray of net's auxiliary states.
begin_epoch : int
The begining training epoch.
end_epoch : int
The end training epoch.
epoch_size : int, optional
Number of batches in a epoch. In default, it is set to
``ceil(num_train_examples / batch_size)``.
optimizer : Optimizer
The optimization algorithm
train_data : DataIter
Training data iterator.
eval_data : DataIter
Validation data iterator.
eval_metric : EvalMetric
An evaluation function or a list of evaluation functions.
epoch_end_callback : callable(epoch, symbol, arg_params, aux_states)
A callback that is invoked at end of each epoch.
This can be used to checkpoint model each epoch.
batch_end_callback : callable(BatchEndParams)
A callback that is invoked at end of each batch.
This can be used to measure speed, get result from evaluation metric. etc.
kvstore : KVStore
The KVStore.
update_on_kvstore : bool
Whether or not perform weight updating on kvstore.
logger : logging logger
When not specified, default logger will be used.
work_load_list : list of float or int, optional
The list of work load for different devices,
in the same order as ``ctx``.
monitor : Monitor, optional
Monitor installed to executor,
for monitoring outputs, weights, and gradients for debugging.
Notes
-----
- This function will inplace update the NDArrays in `arg_params` and `aux_states`.
"""
if logger is None:
logger = logging
executor_manager = DataParallelExecutorManager(symbol=symbol,
sym_gen=sym_gen,
ctx=ctx,
train_data=train_data,
param_names=param_names,
arg_names=arg_names,
aux_names=aux_names,
work_load_list=work_load_list,
logger=logger)
if monitor:
executor_manager.install_monitor(monitor)
executor_manager.set_params(arg_params, aux_params)
if not update_on_kvstore:
updater = get_updater(optimizer)
else:
kvstore.set_optimizer(optimizer)
if kvstore:
_initialize_kvstore(kvstore=kvstore,
param_arrays=executor_manager.param_arrays,
arg_params=arg_params,
param_names=executor_manager.param_names,
update_on_kvstore=update_on_kvstore)
# Now start training
train_data.reset()
for epoch in range(begin_epoch, end_epoch):
# Training phase
tic = time.time()
eval_metric.reset()
nbatch = 0
# Iterate over training data.
while True:
do_reset = True
for data_batch in train_data:
executor_manager.load_data_batch(data_batch)
if monitor is not None:
monitor.tic()
executor_manager.forward(is_train=True)
executor_manager.backward()
if update_on_kvstore:
if 'nccl' in kvstore.type:
_update_params_on_kvstore_nccl(executor_manager.param_arrays,
executor_manager.grad_arrays,
kvstore, executor_manager.param_names)
else:
_update_params_on_kvstore(executor_manager.param_arrays,
executor_manager.grad_arrays,
kvstore, executor_manager.param_names)
else:
_update_params(executor_manager.param_arrays,
executor_manager.grad_arrays,
updater=updater,
num_device=len(ctx),
kvstore=kvstore,
param_names=executor_manager.param_names)
if monitor is not None:
monitor.toc_print()
# evaluate at end, so we can lazy copy
executor_manager.update_metric(eval_metric, data_batch.label)
nbatch += 1
# batch callback (for print purpose)
if batch_end_callback is not None:
batch_end_params = BatchEndParam(epoch=epoch,
nbatch=nbatch,
eval_metric=eval_metric,
locals=locals())
_multiple_callbacks(batch_end_callback, batch_end_params)
# this epoch is done possibly earlier
if epoch_size is not None and nbatch >= epoch_size:
do_reset = False
break
if do_reset:
logger.info('Epoch[%d] Resetting Data Iterator', epoch)
train_data.reset()
# this epoch is done
if epoch_size is None or nbatch >= epoch_size:
break
toc = time.time()
logger.info('Epoch[%d] Time cost=%.3f', epoch, (toc - tic))
if epoch_end_callback or epoch + 1 == end_epoch:
executor_manager.copy_to(arg_params, aux_params)
_multiple_callbacks(epoch_end_callback, epoch, symbol, arg_params, aux_params)
# evaluation
if eval_data:
eval_metric.reset()
eval_data.reset()
total_num_batch = 0
for i, eval_batch in enumerate(eval_data):
executor_manager.load_data_batch(eval_batch)
executor_manager.forward(is_train=False)
executor_manager.update_metric(eval_metric, eval_batch.label)
if eval_batch_end_callback is not None:
batch_end_params = BatchEndParam(epoch=epoch,
nbatch=i,
eval_metric=eval_metric,
locals=locals())
_multiple_callbacks(eval_batch_end_callback, batch_end_params)
total_num_batch += 1
if eval_end_callback is not None:
eval_end_params = BatchEndParam(epoch=epoch,
nbatch=total_num_batch,
eval_metric=eval_metric,
locals=locals())
_multiple_callbacks(eval_end_callback, eval_end_params)
eval_data.reset() | def _train_multi_device(symbol, ctx, arg_names, param_names, aux_names,
arg_params, aux_params,
begin_epoch, end_epoch, epoch_size, optimizer,
kvstore, update_on_kvstore,
train_data, eval_data=None, eval_metric=None,
epoch_end_callback=None, batch_end_callback=None,
logger=None, work_load_list=None, monitor=None,
eval_end_callback=None,
eval_batch_end_callback=None, sym_gen=None):
"""Internal training function on multiple devices.
This function will also work for single device as well.
Parameters
----------
symbol : Symbol
The network configuration.
ctx : list of Context
The training devices.
arg_names: list of str
Name of all arguments of the network.
param_names: list of str
Name of all trainable parameters of the network.
aux_names: list of str
Name of all auxiliary states of the network.
arg_params : dict of str to NDArray
Model parameter, dict of name to NDArray of net's weights.
aux_params : dict of str to NDArray
Model parameter, dict of name to NDArray of net's auxiliary states.
begin_epoch : int
The begining training epoch.
end_epoch : int
The end training epoch.
epoch_size : int, optional
Number of batches in a epoch. In default, it is set to
``ceil(num_train_examples / batch_size)``.
optimizer : Optimizer
The optimization algorithm
train_data : DataIter
Training data iterator.
eval_data : DataIter
Validation data iterator.
eval_metric : EvalMetric
An evaluation function or a list of evaluation functions.
epoch_end_callback : callable(epoch, symbol, arg_params, aux_states)
A callback that is invoked at end of each epoch.
This can be used to checkpoint model each epoch.
batch_end_callback : callable(BatchEndParams)
A callback that is invoked at end of each batch.
This can be used to measure speed, get result from evaluation metric. etc.
kvstore : KVStore
The KVStore.
update_on_kvstore : bool
Whether or not perform weight updating on kvstore.
logger : logging logger
When not specified, default logger will be used.
work_load_list : list of float or int, optional
The list of work load for different devices,
in the same order as ``ctx``.
monitor : Monitor, optional
Monitor installed to executor,
for monitoring outputs, weights, and gradients for debugging.
Notes
-----
- This function will inplace update the NDArrays in `arg_params` and `aux_states`.
"""
if logger is None:
logger = logging
executor_manager = DataParallelExecutorManager(symbol=symbol,
sym_gen=sym_gen,
ctx=ctx,
train_data=train_data,
param_names=param_names,
arg_names=arg_names,
aux_names=aux_names,
work_load_list=work_load_list,
logger=logger)
if monitor:
executor_manager.install_monitor(monitor)
executor_manager.set_params(arg_params, aux_params)
if not update_on_kvstore:
updater = get_updater(optimizer)
else:
kvstore.set_optimizer(optimizer)
if kvstore:
_initialize_kvstore(kvstore=kvstore,
param_arrays=executor_manager.param_arrays,
arg_params=arg_params,
param_names=executor_manager.param_names,
update_on_kvstore=update_on_kvstore)
# Now start training
train_data.reset()
for epoch in range(begin_epoch, end_epoch):
# Training phase
tic = time.time()
eval_metric.reset()
nbatch = 0
# Iterate over training data.
while True:
do_reset = True
for data_batch in train_data:
executor_manager.load_data_batch(data_batch)
if monitor is not None:
monitor.tic()
executor_manager.forward(is_train=True)
executor_manager.backward()
if update_on_kvstore:
if 'nccl' in kvstore.type:
_update_params_on_kvstore_nccl(executor_manager.param_arrays,
executor_manager.grad_arrays,
kvstore, executor_manager.param_names)
else:
_update_params_on_kvstore(executor_manager.param_arrays,
executor_manager.grad_arrays,
kvstore, executor_manager.param_names)
else:
_update_params(executor_manager.param_arrays,
executor_manager.grad_arrays,
updater=updater,
num_device=len(ctx),
kvstore=kvstore,
param_names=executor_manager.param_names)
if monitor is not None:
monitor.toc_print()
# evaluate at end, so we can lazy copy
executor_manager.update_metric(eval_metric, data_batch.label)
nbatch += 1
# batch callback (for print purpose)
if batch_end_callback is not None:
batch_end_params = BatchEndParam(epoch=epoch,
nbatch=nbatch,
eval_metric=eval_metric,
locals=locals())
_multiple_callbacks(batch_end_callback, batch_end_params)
# this epoch is done possibly earlier
if epoch_size is not None and nbatch >= epoch_size:
do_reset = False
break
if do_reset:
logger.info('Epoch[%d] Resetting Data Iterator', epoch)
train_data.reset()
# this epoch is done
if epoch_size is None or nbatch >= epoch_size:
break
toc = time.time()
logger.info('Epoch[%d] Time cost=%.3f', epoch, (toc - tic))
if epoch_end_callback or epoch + 1 == end_epoch:
executor_manager.copy_to(arg_params, aux_params)
_multiple_callbacks(epoch_end_callback, epoch, symbol, arg_params, aux_params)
# evaluation
if eval_data:
eval_metric.reset()
eval_data.reset()
total_num_batch = 0
for i, eval_batch in enumerate(eval_data):
executor_manager.load_data_batch(eval_batch)
executor_manager.forward(is_train=False)
executor_manager.update_metric(eval_metric, eval_batch.label)
if eval_batch_end_callback is not None:
batch_end_params = BatchEndParam(epoch=epoch,
nbatch=i,
eval_metric=eval_metric,
locals=locals())
_multiple_callbacks(eval_batch_end_callback, batch_end_params)
total_num_batch += 1
if eval_end_callback is not None:
eval_end_params = BatchEndParam(epoch=epoch,
nbatch=total_num_batch,
eval_metric=eval_metric,
locals=locals())
_multiple_callbacks(eval_end_callback, eval_end_params)
eval_data.reset() | [
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train | save_checkpoint | Checkpoint the model data into file.
Parameters
----------
prefix : str
Prefix of model name.
epoch : int
The epoch number of the model.
symbol : Symbol
The input Symbol.
arg_params : dict of str to NDArray
Model parameter, dict of name to NDArray of net's weights.
aux_params : dict of str to NDArray
Model parameter, dict of name to NDArray of net's auxiliary states.
Notes
-----
- ``prefix-symbol.json`` will be saved for symbol.
- ``prefix-epoch.params`` will be saved for parameters. | python/mxnet/model.py | def save_checkpoint(prefix, epoch, symbol, arg_params, aux_params):
"""Checkpoint the model data into file.
Parameters
----------
prefix : str
Prefix of model name.
epoch : int
The epoch number of the model.
symbol : Symbol
The input Symbol.
arg_params : dict of str to NDArray
Model parameter, dict of name to NDArray of net's weights.
aux_params : dict of str to NDArray
Model parameter, dict of name to NDArray of net's auxiliary states.
Notes
-----
- ``prefix-symbol.json`` will be saved for symbol.
- ``prefix-epoch.params`` will be saved for parameters.
"""
if symbol is not None:
symbol.save('%s-symbol.json' % prefix)
save_dict = {('arg:%s' % k) : v.as_in_context(cpu()) for k, v in arg_params.items()}
save_dict.update({('aux:%s' % k) : v.as_in_context(cpu()) for k, v in aux_params.items()})
param_name = '%s-%04d.params' % (prefix, epoch)
nd.save(param_name, save_dict)
logging.info('Saved checkpoint to \"%s\"', param_name) | def save_checkpoint(prefix, epoch, symbol, arg_params, aux_params):
"""Checkpoint the model data into file.
Parameters
----------
prefix : str
Prefix of model name.
epoch : int
The epoch number of the model.
symbol : Symbol
The input Symbol.
arg_params : dict of str to NDArray
Model parameter, dict of name to NDArray of net's weights.
aux_params : dict of str to NDArray
Model parameter, dict of name to NDArray of net's auxiliary states.
Notes
-----
- ``prefix-symbol.json`` will be saved for symbol.
- ``prefix-epoch.params`` will be saved for parameters.
"""
if symbol is not None:
symbol.save('%s-symbol.json' % prefix)
save_dict = {('arg:%s' % k) : v.as_in_context(cpu()) for k, v in arg_params.items()}
save_dict.update({('aux:%s' % k) : v.as_in_context(cpu()) for k, v in aux_params.items()})
param_name = '%s-%04d.params' % (prefix, epoch)
nd.save(param_name, save_dict)
logging.info('Saved checkpoint to \"%s\"', param_name) | [
"Checkpoint",
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] | apache/incubator-mxnet | python | https://github.com/apache/incubator-mxnet/blob/1af29e9c060a4c7d60eeaacba32afdb9a7775ba7/python/mxnet/model.py#L394-L421 | [
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train | load_checkpoint | Load model checkpoint from file.
Parameters
----------
prefix : str
Prefix of model name.
epoch : int
Epoch number of model we would like to load.
Returns
-------
symbol : Symbol
The symbol configuration of computation network.
arg_params : dict of str to NDArray
Model parameter, dict of name to NDArray of net's weights.
aux_params : dict of str to NDArray
Model parameter, dict of name to NDArray of net's auxiliary states.
Notes
-----
- Symbol will be loaded from ``prefix-symbol.json``.
- Parameters will be loaded from ``prefix-epoch.params``. | python/mxnet/model.py | def load_checkpoint(prefix, epoch):
"""Load model checkpoint from file.
Parameters
----------
prefix : str
Prefix of model name.
epoch : int
Epoch number of model we would like to load.
Returns
-------
symbol : Symbol
The symbol configuration of computation network.
arg_params : dict of str to NDArray
Model parameter, dict of name to NDArray of net's weights.
aux_params : dict of str to NDArray
Model parameter, dict of name to NDArray of net's auxiliary states.
Notes
-----
- Symbol will be loaded from ``prefix-symbol.json``.
- Parameters will be loaded from ``prefix-epoch.params``.
"""
symbol = sym.load('%s-symbol.json' % prefix)
save_dict = nd.load('%s-%04d.params' % (prefix, epoch))
arg_params = {}
aux_params = {}
for k, v in save_dict.items():
tp, name = k.split(':', 1)
if tp == 'arg':
arg_params[name] = v
if tp == 'aux':
aux_params[name] = v
return (symbol, arg_params, aux_params) | def load_checkpoint(prefix, epoch):
"""Load model checkpoint from file.
Parameters
----------
prefix : str
Prefix of model name.
epoch : int
Epoch number of model we would like to load.
Returns
-------
symbol : Symbol
The symbol configuration of computation network.
arg_params : dict of str to NDArray
Model parameter, dict of name to NDArray of net's weights.
aux_params : dict of str to NDArray
Model parameter, dict of name to NDArray of net's auxiliary states.
Notes
-----
- Symbol will be loaded from ``prefix-symbol.json``.
- Parameters will be loaded from ``prefix-epoch.params``.
"""
symbol = sym.load('%s-symbol.json' % prefix)
save_dict = nd.load('%s-%04d.params' % (prefix, epoch))
arg_params = {}
aux_params = {}
for k, v in save_dict.items():
tp, name = k.split(':', 1)
if tp == 'arg':
arg_params[name] = v
if tp == 'aux':
aux_params[name] = v
return (symbol, arg_params, aux_params) | [
"Load",
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] | apache/incubator-mxnet | python | https://github.com/apache/incubator-mxnet/blob/1af29e9c060a4c7d60eeaacba32afdb9a7775ba7/python/mxnet/model.py#L424-L458 | [
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train | FeedForward._check_arguments | verify the argument of the default symbol and user provided parameters | python/mxnet/model.py | def _check_arguments(self):
"""verify the argument of the default symbol and user provided parameters"""
if self.argument_checked:
return
assert(self.symbol is not None)
self.argument_checked = True
# check if symbol contain duplicated names.
_check_arguments(self.symbol)
# rematch parameters to delete useless ones
if self.allow_extra_params:
if self.arg_params:
arg_names = set(self.symbol.list_arguments())
self.arg_params = {k : v for k, v in self.arg_params.items()
if k in arg_names}
if self.aux_params:
aux_names = set(self.symbol.list_auxiliary_states())
self.aux_params = {k : v for k, v in self.aux_params.items()
if k in aux_names} | def _check_arguments(self):
"""verify the argument of the default symbol and user provided parameters"""
if self.argument_checked:
return
assert(self.symbol is not None)
self.argument_checked = True
# check if symbol contain duplicated names.
_check_arguments(self.symbol)
# rematch parameters to delete useless ones
if self.allow_extra_params:
if self.arg_params:
arg_names = set(self.symbol.list_arguments())
self.arg_params = {k : v for k, v in self.arg_params.items()
if k in arg_names}
if self.aux_params:
aux_names = set(self.symbol.list_auxiliary_states())
self.aux_params = {k : v for k, v in self.aux_params.items()
if k in aux_names} | [
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train | FeedForward._init_params | Initialize weight parameters and auxiliary states. | python/mxnet/model.py | def _init_params(self, inputs, overwrite=False):
"""Initialize weight parameters and auxiliary states."""
inputs = [x if isinstance(x, DataDesc) else DataDesc(*x) for x in inputs]
input_shapes = {item.name: item.shape for item in inputs}
arg_shapes, _, aux_shapes = self.symbol.infer_shape(**input_shapes)
assert arg_shapes is not None
input_dtypes = {item.name: item.dtype for item in inputs}
arg_dtypes, _, aux_dtypes = self.symbol.infer_type(**input_dtypes)
assert arg_dtypes is not None
arg_names = self.symbol.list_arguments()
input_names = input_shapes.keys()
param_names = [key for key in arg_names if key not in input_names]
aux_names = self.symbol.list_auxiliary_states()
param_name_attrs = [x for x in zip(arg_names, arg_shapes, arg_dtypes)
if x[0] in param_names]
arg_params = {k : nd.zeros(shape=s, dtype=t)
for k, s, t in param_name_attrs}
aux_name_attrs = [x for x in zip(aux_names, aux_shapes, aux_dtypes)
if x[0] in aux_names]
aux_params = {k : nd.zeros(shape=s, dtype=t)
for k, s, t in aux_name_attrs}
for k, v in arg_params.items():
if self.arg_params and k in self.arg_params and (not overwrite):
arg_params[k][:] = self.arg_params[k][:]
else:
self.initializer(k, v)
for k, v in aux_params.items():
if self.aux_params and k in self.aux_params and (not overwrite):
aux_params[k][:] = self.aux_params[k][:]
else:
self.initializer(k, v)
self.arg_params = arg_params
self.aux_params = aux_params
return (arg_names, list(param_names), aux_names) | def _init_params(self, inputs, overwrite=False):
"""Initialize weight parameters and auxiliary states."""
inputs = [x if isinstance(x, DataDesc) else DataDesc(*x) for x in inputs]
input_shapes = {item.name: item.shape for item in inputs}
arg_shapes, _, aux_shapes = self.symbol.infer_shape(**input_shapes)
assert arg_shapes is not None
input_dtypes = {item.name: item.dtype for item in inputs}
arg_dtypes, _, aux_dtypes = self.symbol.infer_type(**input_dtypes)
assert arg_dtypes is not None
arg_names = self.symbol.list_arguments()
input_names = input_shapes.keys()
param_names = [key for key in arg_names if key not in input_names]
aux_names = self.symbol.list_auxiliary_states()
param_name_attrs = [x for x in zip(arg_names, arg_shapes, arg_dtypes)
if x[0] in param_names]
arg_params = {k : nd.zeros(shape=s, dtype=t)
for k, s, t in param_name_attrs}
aux_name_attrs = [x for x in zip(aux_names, aux_shapes, aux_dtypes)
if x[0] in aux_names]
aux_params = {k : nd.zeros(shape=s, dtype=t)
for k, s, t in aux_name_attrs}
for k, v in arg_params.items():
if self.arg_params and k in self.arg_params and (not overwrite):
arg_params[k][:] = self.arg_params[k][:]
else:
self.initializer(k, v)
for k, v in aux_params.items():
if self.aux_params and k in self.aux_params and (not overwrite):
aux_params[k][:] = self.aux_params[k][:]
else:
self.initializer(k, v)
self.arg_params = arg_params
self.aux_params = aux_params
return (arg_names, list(param_names), aux_names) | [
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train | FeedForward._init_predictor | Initialize the predictor module for running prediction. | python/mxnet/model.py | def _init_predictor(self, input_shapes, type_dict=None):
"""Initialize the predictor module for running prediction."""
shapes = {name: self.arg_params[name].shape for name in self.arg_params}
shapes.update(dict(input_shapes))
if self._pred_exec is not None:
arg_shapes, _, _ = self.symbol.infer_shape(**shapes)
assert arg_shapes is not None, "Incomplete input shapes"
pred_shapes = [x.shape for x in self._pred_exec.arg_arrays]
if arg_shapes == pred_shapes:
return
# for now only use the first device
pred_exec = self.symbol.simple_bind(
self.ctx[0], grad_req='null', type_dict=type_dict, **shapes)
pred_exec.copy_params_from(self.arg_params, self.aux_params)
_check_arguments(self.symbol)
self._pred_exec = pred_exec | def _init_predictor(self, input_shapes, type_dict=None):
"""Initialize the predictor module for running prediction."""
shapes = {name: self.arg_params[name].shape for name in self.arg_params}
shapes.update(dict(input_shapes))
if self._pred_exec is not None:
arg_shapes, _, _ = self.symbol.infer_shape(**shapes)
assert arg_shapes is not None, "Incomplete input shapes"
pred_shapes = [x.shape for x in self._pred_exec.arg_arrays]
if arg_shapes == pred_shapes:
return
# for now only use the first device
pred_exec = self.symbol.simple_bind(
self.ctx[0], grad_req='null', type_dict=type_dict, **shapes)
pred_exec.copy_params_from(self.arg_params, self.aux_params)
_check_arguments(self.symbol)
self._pred_exec = pred_exec | [
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train | FeedForward._init_iter | Initialize the iterator given input. | python/mxnet/model.py | def _init_iter(self, X, y, is_train):
"""Initialize the iterator given input."""
if isinstance(X, (np.ndarray, nd.NDArray)):
if y is None:
if is_train:
raise ValueError('y must be specified when X is numpy.ndarray')
else:
y = np.zeros(X.shape[0])
if not isinstance(y, (np.ndarray, nd.NDArray)):
raise TypeError('y must be ndarray when X is numpy.ndarray')
if X.shape[0] != y.shape[0]:
raise ValueError("The numbers of data points and labels not equal")
if y.ndim == 2 and y.shape[1] == 1:
y = y.flatten()
if y.ndim != 1:
raise ValueError("Label must be 1D or 2D (with 2nd dimension being 1)")
if is_train:
return io.NDArrayIter(X, y, min(X.shape[0], self.numpy_batch_size),
shuffle=is_train, last_batch_handle='roll_over')
else:
return io.NDArrayIter(X, y, min(X.shape[0], self.numpy_batch_size), shuffle=False)
if not isinstance(X, io.DataIter):
raise TypeError('X must be DataIter, NDArray or numpy.ndarray')
return X | def _init_iter(self, X, y, is_train):
"""Initialize the iterator given input."""
if isinstance(X, (np.ndarray, nd.NDArray)):
if y is None:
if is_train:
raise ValueError('y must be specified when X is numpy.ndarray')
else:
y = np.zeros(X.shape[0])
if not isinstance(y, (np.ndarray, nd.NDArray)):
raise TypeError('y must be ndarray when X is numpy.ndarray')
if X.shape[0] != y.shape[0]:
raise ValueError("The numbers of data points and labels not equal")
if y.ndim == 2 and y.shape[1] == 1:
y = y.flatten()
if y.ndim != 1:
raise ValueError("Label must be 1D or 2D (with 2nd dimension being 1)")
if is_train:
return io.NDArrayIter(X, y, min(X.shape[0], self.numpy_batch_size),
shuffle=is_train, last_batch_handle='roll_over')
else:
return io.NDArrayIter(X, y, min(X.shape[0], self.numpy_batch_size), shuffle=False)
if not isinstance(X, io.DataIter):
raise TypeError('X must be DataIter, NDArray or numpy.ndarray')
return X | [
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] | apache/incubator-mxnet | python | https://github.com/apache/incubator-mxnet/blob/1af29e9c060a4c7d60eeaacba32afdb9a7775ba7/python/mxnet/model.py#L639-L662 | [
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train | FeedForward._init_eval_iter | Initialize the iterator given eval_data. | python/mxnet/model.py | def _init_eval_iter(self, eval_data):
"""Initialize the iterator given eval_data."""
if eval_data is None:
return eval_data
if isinstance(eval_data, (tuple, list)) and len(eval_data) == 2:
if eval_data[0] is not None:
if eval_data[1] is None and isinstance(eval_data[0], io.DataIter):
return eval_data[0]
input_data = (np.array(eval_data[0]) if isinstance(eval_data[0], list)
else eval_data[0])
input_label = (np.array(eval_data[1]) if isinstance(eval_data[1], list)
else eval_data[1])
return self._init_iter(input_data, input_label, is_train=True)
else:
raise ValueError("Eval data is NONE")
if not isinstance(eval_data, io.DataIter):
raise TypeError('Eval data must be DataIter, or ' \
'NDArray/numpy.ndarray/list pair (i.e. tuple/list of length 2)')
return eval_data | def _init_eval_iter(self, eval_data):
"""Initialize the iterator given eval_data."""
if eval_data is None:
return eval_data
if isinstance(eval_data, (tuple, list)) and len(eval_data) == 2:
if eval_data[0] is not None:
if eval_data[1] is None and isinstance(eval_data[0], io.DataIter):
return eval_data[0]
input_data = (np.array(eval_data[0]) if isinstance(eval_data[0], list)
else eval_data[0])
input_label = (np.array(eval_data[1]) if isinstance(eval_data[1], list)
else eval_data[1])
return self._init_iter(input_data, input_label, is_train=True)
else:
raise ValueError("Eval data is NONE")
if not isinstance(eval_data, io.DataIter):
raise TypeError('Eval data must be DataIter, or ' \
'NDArray/numpy.ndarray/list pair (i.e. tuple/list of length 2)')
return eval_data | [
"Initialize",
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"."
] | apache/incubator-mxnet | python | https://github.com/apache/incubator-mxnet/blob/1af29e9c060a4c7d60eeaacba32afdb9a7775ba7/python/mxnet/model.py#L664-L682 | [
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"... | 1af29e9c060a4c7d60eeaacba32afdb9a7775ba7 |
train | FeedForward.predict | Run the prediction, always only use one device.
Parameters
----------
X : mxnet.DataIter
num_batch : int or None
The number of batch to run. Go though all batches if ``None``.
Returns
-------
y : numpy.ndarray or a list of numpy.ndarray if the network has multiple outputs.
The predicted value of the output. | python/mxnet/model.py | def predict(self, X, num_batch=None, return_data=False, reset=True):
"""Run the prediction, always only use one device.
Parameters
----------
X : mxnet.DataIter
num_batch : int or None
The number of batch to run. Go though all batches if ``None``.
Returns
-------
y : numpy.ndarray or a list of numpy.ndarray if the network has multiple outputs.
The predicted value of the output.
"""
X = self._init_iter(X, None, is_train=False)
if reset:
X.reset()
data_shapes = X.provide_data
data_names = [x[0] for x in data_shapes]
type_dict = dict((key, value.dtype) for (key, value) in self.arg_params.items())
for x in X.provide_data:
if isinstance(x, DataDesc):
type_dict[x.name] = x.dtype
else:
type_dict[x[0]] = mx_real_t
self._init_predictor(data_shapes, type_dict)
batch_size = X.batch_size
data_arrays = [self._pred_exec.arg_dict[name] for name in data_names]
output_list = [[] for _ in range(len(self._pred_exec.outputs))]
if return_data:
data_list = [[] for _ in X.provide_data]
label_list = [[] for _ in X.provide_label]
i = 0
for batch in X:
_load_data(batch, data_arrays)
self._pred_exec.forward(is_train=False)
padded = batch.pad
real_size = batch_size - padded
for o_list, o_nd in zip(output_list, self._pred_exec.outputs):
o_list.append(o_nd[0:real_size].asnumpy())
if return_data:
for j, x in enumerate(batch.data):
data_list[j].append(x[0:real_size].asnumpy())
for j, x in enumerate(batch.label):
label_list[j].append(x[0:real_size].asnumpy())
i += 1
if num_batch is not None and i == num_batch:
break
outputs = [np.concatenate(x) for x in output_list]
if len(outputs) == 1:
outputs = outputs[0]
if return_data:
data = [np.concatenate(x) for x in data_list]
label = [np.concatenate(x) for x in label_list]
if len(data) == 1:
data = data[0]
if len(label) == 1:
label = label[0]
return outputs, data, label
else:
return outputs | def predict(self, X, num_batch=None, return_data=False, reset=True):
"""Run the prediction, always only use one device.
Parameters
----------
X : mxnet.DataIter
num_batch : int or None
The number of batch to run. Go though all batches if ``None``.
Returns
-------
y : numpy.ndarray or a list of numpy.ndarray if the network has multiple outputs.
The predicted value of the output.
"""
X = self._init_iter(X, None, is_train=False)
if reset:
X.reset()
data_shapes = X.provide_data
data_names = [x[0] for x in data_shapes]
type_dict = dict((key, value.dtype) for (key, value) in self.arg_params.items())
for x in X.provide_data:
if isinstance(x, DataDesc):
type_dict[x.name] = x.dtype
else:
type_dict[x[0]] = mx_real_t
self._init_predictor(data_shapes, type_dict)
batch_size = X.batch_size
data_arrays = [self._pred_exec.arg_dict[name] for name in data_names]
output_list = [[] for _ in range(len(self._pred_exec.outputs))]
if return_data:
data_list = [[] for _ in X.provide_data]
label_list = [[] for _ in X.provide_label]
i = 0
for batch in X:
_load_data(batch, data_arrays)
self._pred_exec.forward(is_train=False)
padded = batch.pad
real_size = batch_size - padded
for o_list, o_nd in zip(output_list, self._pred_exec.outputs):
o_list.append(o_nd[0:real_size].asnumpy())
if return_data:
for j, x in enumerate(batch.data):
data_list[j].append(x[0:real_size].asnumpy())
for j, x in enumerate(batch.label):
label_list[j].append(x[0:real_size].asnumpy())
i += 1
if num_batch is not None and i == num_batch:
break
outputs = [np.concatenate(x) for x in output_list]
if len(outputs) == 1:
outputs = outputs[0]
if return_data:
data = [np.concatenate(x) for x in data_list]
label = [np.concatenate(x) for x in label_list]
if len(data) == 1:
data = data[0]
if len(label) == 1:
label = label[0]
return outputs, data, label
else:
return outputs | [
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] | apache/incubator-mxnet | python | https://github.com/apache/incubator-mxnet/blob/1af29e9c060a4c7d60eeaacba32afdb9a7775ba7/python/mxnet/model.py#L684-L751 | [
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"... | 1af29e9c060a4c7d60eeaacba32afdb9a7775ba7 |
train | FeedForward.score | Run the model given an input and calculate the score
as assessed by an evaluation metric.
Parameters
----------
X : mxnet.DataIter
eval_metric : metric.metric
The metric for calculating score.
num_batch : int or None
The number of batches to run. Go though all batches if ``None``.
Returns
-------
s : float
The final score. | python/mxnet/model.py | def score(self, X, eval_metric='acc', num_batch=None, batch_end_callback=None, reset=True):
"""Run the model given an input and calculate the score
as assessed by an evaluation metric.
Parameters
----------
X : mxnet.DataIter
eval_metric : metric.metric
The metric for calculating score.
num_batch : int or None
The number of batches to run. Go though all batches if ``None``.
Returns
-------
s : float
The final score.
"""
# setup metric
if not isinstance(eval_metric, metric.EvalMetric):
eval_metric = metric.create(eval_metric)
X = self._init_iter(X, None, is_train=False)
if reset:
X.reset()
data_shapes = X.provide_data
data_names = [x[0] for x in data_shapes]
type_dict = dict((key, value.dtype) for (key, value) in self.arg_params.items())
for x in X.provide_data:
if isinstance(x, DataDesc):
type_dict[x.name] = x.dtype
else:
type_dict[x[0]] = mx_real_t
self._init_predictor(data_shapes, type_dict)
data_arrays = [self._pred_exec.arg_dict[name] for name in data_names]
for i, batch in enumerate(X):
if num_batch is not None and i == num_batch:
break
_load_data(batch, data_arrays)
self._pred_exec.forward(is_train=False)
eval_metric.update(batch.label, self._pred_exec.outputs)
if batch_end_callback is not None:
batch_end_params = BatchEndParam(epoch=0,
nbatch=i,
eval_metric=eval_metric,
locals=locals())
_multiple_callbacks(batch_end_callback, batch_end_params)
return eval_metric.get()[1] | def score(self, X, eval_metric='acc', num_batch=None, batch_end_callback=None, reset=True):
"""Run the model given an input and calculate the score
as assessed by an evaluation metric.
Parameters
----------
X : mxnet.DataIter
eval_metric : metric.metric
The metric for calculating score.
num_batch : int or None
The number of batches to run. Go though all batches if ``None``.
Returns
-------
s : float
The final score.
"""
# setup metric
if not isinstance(eval_metric, metric.EvalMetric):
eval_metric = metric.create(eval_metric)
X = self._init_iter(X, None, is_train=False)
if reset:
X.reset()
data_shapes = X.provide_data
data_names = [x[0] for x in data_shapes]
type_dict = dict((key, value.dtype) for (key, value) in self.arg_params.items())
for x in X.provide_data:
if isinstance(x, DataDesc):
type_dict[x.name] = x.dtype
else:
type_dict[x[0]] = mx_real_t
self._init_predictor(data_shapes, type_dict)
data_arrays = [self._pred_exec.arg_dict[name] for name in data_names]
for i, batch in enumerate(X):
if num_batch is not None and i == num_batch:
break
_load_data(batch, data_arrays)
self._pred_exec.forward(is_train=False)
eval_metric.update(batch.label, self._pred_exec.outputs)
if batch_end_callback is not None:
batch_end_params = BatchEndParam(epoch=0,
nbatch=i,
eval_metric=eval_metric,
locals=locals())
_multiple_callbacks(batch_end_callback, batch_end_params)
return eval_metric.get()[1] | [
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] | apache/incubator-mxnet | python | https://github.com/apache/incubator-mxnet/blob/1af29e9c060a4c7d60eeaacba32afdb9a7775ba7/python/mxnet/model.py#L753-L802 | [
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"me... | 1af29e9c060a4c7d60eeaacba32afdb9a7775ba7 |
train | FeedForward.fit | Fit the model.
Parameters
----------
X : DataIter, or numpy.ndarray/NDArray
Training data. If `X` is a `DataIter`, the name or (if name not available)
the position of its outputs should match the corresponding variable
names defined in the symbolic graph.
y : numpy.ndarray/NDArray, optional
Training set label.
If X is ``numpy.ndarray`` or `NDArray`, `y` is required to be set.
While y can be 1D or 2D (with 2nd dimension as 1), its first dimension must be
the same as `X`, i.e. the number of data points and labels should be equal.
eval_data : DataIter or numpy.ndarray/list/NDArray pair
If eval_data is numpy.ndarray/list/NDArray pair,
it should be ``(valid_data, valid_label)``.
eval_metric : metric.EvalMetric or str or callable
The evaluation metric. This could be the name of evaluation metric
or a custom evaluation function that returns statistics
based on a minibatch.
epoch_end_callback : callable(epoch, symbol, arg_params, aux_states)
A callback that is invoked at end of each epoch.
This can be used to checkpoint model each epoch.
batch_end_callback: callable(epoch)
A callback that is invoked at end of each batch for purposes of printing.
kvstore: KVStore or str, optional
The KVStore or a string kvstore type: 'local', 'dist_sync', 'dist_async'
In default uses 'local', often no need to change for single machiine.
logger : logging logger, optional
When not specified, default logger will be used.
work_load_list : float or int, optional
The list of work load for different devices,
in the same order as `ctx`.
Note
----
KVStore behavior
- 'local', multi-devices on a single machine, will automatically choose best type.
- 'dist_sync', multiple machines communicating via BSP.
- 'dist_async', multiple machines with asynchronous communication. | python/mxnet/model.py | def fit(self, X, y=None, eval_data=None, eval_metric='acc',
epoch_end_callback=None, batch_end_callback=None, kvstore='local', logger=None,
work_load_list=None, monitor=None, eval_end_callback=LogValidationMetricsCallback(),
eval_batch_end_callback=None):
"""Fit the model.
Parameters
----------
X : DataIter, or numpy.ndarray/NDArray
Training data. If `X` is a `DataIter`, the name or (if name not available)
the position of its outputs should match the corresponding variable
names defined in the symbolic graph.
y : numpy.ndarray/NDArray, optional
Training set label.
If X is ``numpy.ndarray`` or `NDArray`, `y` is required to be set.
While y can be 1D or 2D (with 2nd dimension as 1), its first dimension must be
the same as `X`, i.e. the number of data points and labels should be equal.
eval_data : DataIter or numpy.ndarray/list/NDArray pair
If eval_data is numpy.ndarray/list/NDArray pair,
it should be ``(valid_data, valid_label)``.
eval_metric : metric.EvalMetric or str or callable
The evaluation metric. This could be the name of evaluation metric
or a custom evaluation function that returns statistics
based on a minibatch.
epoch_end_callback : callable(epoch, symbol, arg_params, aux_states)
A callback that is invoked at end of each epoch.
This can be used to checkpoint model each epoch.
batch_end_callback: callable(epoch)
A callback that is invoked at end of each batch for purposes of printing.
kvstore: KVStore or str, optional
The KVStore or a string kvstore type: 'local', 'dist_sync', 'dist_async'
In default uses 'local', often no need to change for single machiine.
logger : logging logger, optional
When not specified, default logger will be used.
work_load_list : float or int, optional
The list of work load for different devices,
in the same order as `ctx`.
Note
----
KVStore behavior
- 'local', multi-devices on a single machine, will automatically choose best type.
- 'dist_sync', multiple machines communicating via BSP.
- 'dist_async', multiple machines with asynchronous communication.
"""
data = self._init_iter(X, y, is_train=True)
eval_data = self._init_eval_iter(eval_data)
if self.sym_gen:
self.symbol = self.sym_gen(data.default_bucket_key) # pylint: disable=no-member
self._check_arguments()
self.kwargs["sym"] = self.symbol
arg_names, param_names, aux_names = \
self._init_params(data.provide_data+data.provide_label)
# setup metric
if not isinstance(eval_metric, metric.EvalMetric):
eval_metric = metric.create(eval_metric)
# create kvstore
(kvstore, update_on_kvstore) = _create_kvstore(
kvstore, len(self.ctx), self.arg_params)
param_idx2name = {}
if update_on_kvstore:
param_idx2name.update(enumerate(param_names))
else:
for i, n in enumerate(param_names):
for k in range(len(self.ctx)):
param_idx2name[i*len(self.ctx)+k] = n
self.kwargs["param_idx2name"] = param_idx2name
# init optmizer
if isinstance(self.optimizer, str):
batch_size = data.batch_size
if kvstore and 'dist' in kvstore.type and '_async' not in kvstore.type:
batch_size *= kvstore.num_workers
optimizer = opt.create(self.optimizer,
rescale_grad=(1.0/batch_size),
**(self.kwargs))
elif isinstance(self.optimizer, opt.Optimizer):
if not optimizer.idx2name:
optimizer.idx2name = param_idx2name.copy()
optimizer = self.optimizer
# do training
_train_multi_device(self.symbol, self.ctx, arg_names, param_names, aux_names,
self.arg_params, self.aux_params,
begin_epoch=self.begin_epoch, end_epoch=self.num_epoch,
epoch_size=self.epoch_size,
optimizer=optimizer,
train_data=data, eval_data=eval_data,
eval_metric=eval_metric,
epoch_end_callback=epoch_end_callback,
batch_end_callback=batch_end_callback,
kvstore=kvstore, update_on_kvstore=update_on_kvstore,
logger=logger, work_load_list=work_load_list, monitor=monitor,
eval_end_callback=eval_end_callback,
eval_batch_end_callback=eval_batch_end_callback,
sym_gen=self.sym_gen) | def fit(self, X, y=None, eval_data=None, eval_metric='acc',
epoch_end_callback=None, batch_end_callback=None, kvstore='local', logger=None,
work_load_list=None, monitor=None, eval_end_callback=LogValidationMetricsCallback(),
eval_batch_end_callback=None):
"""Fit the model.
Parameters
----------
X : DataIter, or numpy.ndarray/NDArray
Training data. If `X` is a `DataIter`, the name or (if name not available)
the position of its outputs should match the corresponding variable
names defined in the symbolic graph.
y : numpy.ndarray/NDArray, optional
Training set label.
If X is ``numpy.ndarray`` or `NDArray`, `y` is required to be set.
While y can be 1D or 2D (with 2nd dimension as 1), its first dimension must be
the same as `X`, i.e. the number of data points and labels should be equal.
eval_data : DataIter or numpy.ndarray/list/NDArray pair
If eval_data is numpy.ndarray/list/NDArray pair,
it should be ``(valid_data, valid_label)``.
eval_metric : metric.EvalMetric or str or callable
The evaluation metric. This could be the name of evaluation metric
or a custom evaluation function that returns statistics
based on a minibatch.
epoch_end_callback : callable(epoch, symbol, arg_params, aux_states)
A callback that is invoked at end of each epoch.
This can be used to checkpoint model each epoch.
batch_end_callback: callable(epoch)
A callback that is invoked at end of each batch for purposes of printing.
kvstore: KVStore or str, optional
The KVStore or a string kvstore type: 'local', 'dist_sync', 'dist_async'
In default uses 'local', often no need to change for single machiine.
logger : logging logger, optional
When not specified, default logger will be used.
work_load_list : float or int, optional
The list of work load for different devices,
in the same order as `ctx`.
Note
----
KVStore behavior
- 'local', multi-devices on a single machine, will automatically choose best type.
- 'dist_sync', multiple machines communicating via BSP.
- 'dist_async', multiple machines with asynchronous communication.
"""
data = self._init_iter(X, y, is_train=True)
eval_data = self._init_eval_iter(eval_data)
if self.sym_gen:
self.symbol = self.sym_gen(data.default_bucket_key) # pylint: disable=no-member
self._check_arguments()
self.kwargs["sym"] = self.symbol
arg_names, param_names, aux_names = \
self._init_params(data.provide_data+data.provide_label)
# setup metric
if not isinstance(eval_metric, metric.EvalMetric):
eval_metric = metric.create(eval_metric)
# create kvstore
(kvstore, update_on_kvstore) = _create_kvstore(
kvstore, len(self.ctx), self.arg_params)
param_idx2name = {}
if update_on_kvstore:
param_idx2name.update(enumerate(param_names))
else:
for i, n in enumerate(param_names):
for k in range(len(self.ctx)):
param_idx2name[i*len(self.ctx)+k] = n
self.kwargs["param_idx2name"] = param_idx2name
# init optmizer
if isinstance(self.optimizer, str):
batch_size = data.batch_size
if kvstore and 'dist' in kvstore.type and '_async' not in kvstore.type:
batch_size *= kvstore.num_workers
optimizer = opt.create(self.optimizer,
rescale_grad=(1.0/batch_size),
**(self.kwargs))
elif isinstance(self.optimizer, opt.Optimizer):
if not optimizer.idx2name:
optimizer.idx2name = param_idx2name.copy()
optimizer = self.optimizer
# do training
_train_multi_device(self.symbol, self.ctx, arg_names, param_names, aux_names,
self.arg_params, self.aux_params,
begin_epoch=self.begin_epoch, end_epoch=self.num_epoch,
epoch_size=self.epoch_size,
optimizer=optimizer,
train_data=data, eval_data=eval_data,
eval_metric=eval_metric,
epoch_end_callback=epoch_end_callback,
batch_end_callback=batch_end_callback,
kvstore=kvstore, update_on_kvstore=update_on_kvstore,
logger=logger, work_load_list=work_load_list, monitor=monitor,
eval_end_callback=eval_end_callback,
eval_batch_end_callback=eval_batch_end_callback,
sym_gen=self.sym_gen) | [
"Fit",
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"."
] | apache/incubator-mxnet | python | https://github.com/apache/incubator-mxnet/blob/1af29e9c060a4c7d60eeaacba32afdb9a7775ba7/python/mxnet/model.py#L804-L905 | [
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... | 1af29e9c060a4c7d60eeaacba32afdb9a7775ba7 |
train | FeedForward.save | Checkpoint the model checkpoint into file.
You can also use `pickle` to do the job if you only work on Python.
The advantage of `load` and `save` (as compared to `pickle`) is that
the resulting file can be loaded from other MXNet language bindings.
One can also directly `load`/`save` from/to cloud storage(S3, HDFS)
Parameters
----------
prefix : str
Prefix of model name.
Notes
-----
- ``prefix-symbol.json`` will be saved for symbol.
- ``prefix-epoch.params`` will be saved for parameters. | python/mxnet/model.py | def save(self, prefix, epoch=None):
"""Checkpoint the model checkpoint into file.
You can also use `pickle` to do the job if you only work on Python.
The advantage of `load` and `save` (as compared to `pickle`) is that
the resulting file can be loaded from other MXNet language bindings.
One can also directly `load`/`save` from/to cloud storage(S3, HDFS)
Parameters
----------
prefix : str
Prefix of model name.
Notes
-----
- ``prefix-symbol.json`` will be saved for symbol.
- ``prefix-epoch.params`` will be saved for parameters.
"""
if epoch is None:
epoch = self.num_epoch
assert epoch is not None
save_checkpoint(prefix, epoch, self.symbol, self.arg_params, self.aux_params) | def save(self, prefix, epoch=None):
"""Checkpoint the model checkpoint into file.
You can also use `pickle` to do the job if you only work on Python.
The advantage of `load` and `save` (as compared to `pickle`) is that
the resulting file can be loaded from other MXNet language bindings.
One can also directly `load`/`save` from/to cloud storage(S3, HDFS)
Parameters
----------
prefix : str
Prefix of model name.
Notes
-----
- ``prefix-symbol.json`` will be saved for symbol.
- ``prefix-epoch.params`` will be saved for parameters.
"""
if epoch is None:
epoch = self.num_epoch
assert epoch is not None
save_checkpoint(prefix, epoch, self.symbol, self.arg_params, self.aux_params) | [
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... | apache/incubator-mxnet | python | https://github.com/apache/incubator-mxnet/blob/1af29e9c060a4c7d60eeaacba32afdb9a7775ba7/python/mxnet/model.py#L908-L928 | [
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train | FeedForward.load | Load model checkpoint from file.
Parameters
----------
prefix : str
Prefix of model name.
epoch : int
epoch number of model we would like to load.
ctx : Context or list of Context, optional
The device context of training and prediction.
kwargs : dict
Other parameters for model, including `num_epoch`, optimizer and `numpy_batch_size`.
Returns
-------
model : FeedForward
The loaded model that can be used for prediction.
Notes
-----
- ``prefix-symbol.json`` will be saved for symbol.
- ``prefix-epoch.params`` will be saved for parameters. | python/mxnet/model.py | def load(prefix, epoch, ctx=None, **kwargs):
"""Load model checkpoint from file.
Parameters
----------
prefix : str
Prefix of model name.
epoch : int
epoch number of model we would like to load.
ctx : Context or list of Context, optional
The device context of training and prediction.
kwargs : dict
Other parameters for model, including `num_epoch`, optimizer and `numpy_batch_size`.
Returns
-------
model : FeedForward
The loaded model that can be used for prediction.
Notes
-----
- ``prefix-symbol.json`` will be saved for symbol.
- ``prefix-epoch.params`` will be saved for parameters.
"""
symbol, arg_params, aux_params = load_checkpoint(prefix, epoch)
return FeedForward(symbol, ctx=ctx,
arg_params=arg_params, aux_params=aux_params,
begin_epoch=epoch,
**kwargs) | def load(prefix, epoch, ctx=None, **kwargs):
"""Load model checkpoint from file.
Parameters
----------
prefix : str
Prefix of model name.
epoch : int
epoch number of model we would like to load.
ctx : Context or list of Context, optional
The device context of training and prediction.
kwargs : dict
Other parameters for model, including `num_epoch`, optimizer and `numpy_batch_size`.
Returns
-------
model : FeedForward
The loaded model that can be used for prediction.
Notes
-----
- ``prefix-symbol.json`` will be saved for symbol.
- ``prefix-epoch.params`` will be saved for parameters.
"""
symbol, arg_params, aux_params = load_checkpoint(prefix, epoch)
return FeedForward(symbol, ctx=ctx,
arg_params=arg_params, aux_params=aux_params,
begin_epoch=epoch,
**kwargs) | [
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train | FeedForward.create | Functional style to create a model.
This function is more consistent with functional
languages such as R, where mutation is not allowed.
Parameters
----------
symbol : Symbol
The symbol configuration of a computation network.
X : DataIter
Training data.
y : numpy.ndarray, optional
If `X` is a ``numpy.ndarray``, `y` must be set.
ctx : Context or list of Context, optional
The device context of training and prediction.
To use multi-GPU training, pass in a list of GPU contexts.
num_epoch : int, optional
The number of training epochs(epochs).
epoch_size : int, optional
Number of batches in a epoch. In default, it is set to
``ceil(num_train_examples / batch_size)``.
optimizer : str or Optimizer, optional
The name of the chosen optimizer, or an optimizer object, used for training.
initializer : initializer function, optional
The initialization scheme used.
eval_data : DataIter or numpy.ndarray pair
If `eval_set` is ``numpy.ndarray`` pair, it should
be (`valid_data`, `valid_label`).
eval_metric : metric.EvalMetric or str or callable
The evaluation metric. Can be the name of an evaluation metric
or a custom evaluation function that returns statistics
based on a minibatch.
epoch_end_callback : callable(epoch, symbol, arg_params, aux_states)
A callback that is invoked at end of each epoch.
This can be used to checkpoint model each epoch.
batch_end_callback: callable(epoch)
A callback that is invoked at end of each batch for print purposes.
kvstore: KVStore or str, optional
The KVStore or a string kvstore type: 'local', 'dist_sync', 'dis_async'.
Defaults to 'local', often no need to change for single machine.
logger : logging logger, optional
When not specified, default logger will be used.
work_load_list : list of float or int, optional
The list of work load for different devices,
in the same order as `ctx`. | python/mxnet/model.py | def create(symbol, X, y=None, ctx=None,
num_epoch=None, epoch_size=None, optimizer='sgd', initializer=Uniform(0.01),
eval_data=None, eval_metric='acc',
epoch_end_callback=None, batch_end_callback=None,
kvstore='local', logger=None, work_load_list=None,
eval_end_callback=LogValidationMetricsCallback(),
eval_batch_end_callback=None, **kwargs):
"""Functional style to create a model.
This function is more consistent with functional
languages such as R, where mutation is not allowed.
Parameters
----------
symbol : Symbol
The symbol configuration of a computation network.
X : DataIter
Training data.
y : numpy.ndarray, optional
If `X` is a ``numpy.ndarray``, `y` must be set.
ctx : Context or list of Context, optional
The device context of training and prediction.
To use multi-GPU training, pass in a list of GPU contexts.
num_epoch : int, optional
The number of training epochs(epochs).
epoch_size : int, optional
Number of batches in a epoch. In default, it is set to
``ceil(num_train_examples / batch_size)``.
optimizer : str or Optimizer, optional
The name of the chosen optimizer, or an optimizer object, used for training.
initializer : initializer function, optional
The initialization scheme used.
eval_data : DataIter or numpy.ndarray pair
If `eval_set` is ``numpy.ndarray`` pair, it should
be (`valid_data`, `valid_label`).
eval_metric : metric.EvalMetric or str or callable
The evaluation metric. Can be the name of an evaluation metric
or a custom evaluation function that returns statistics
based on a minibatch.
epoch_end_callback : callable(epoch, symbol, arg_params, aux_states)
A callback that is invoked at end of each epoch.
This can be used to checkpoint model each epoch.
batch_end_callback: callable(epoch)
A callback that is invoked at end of each batch for print purposes.
kvstore: KVStore or str, optional
The KVStore or a string kvstore type: 'local', 'dist_sync', 'dis_async'.
Defaults to 'local', often no need to change for single machine.
logger : logging logger, optional
When not specified, default logger will be used.
work_load_list : list of float or int, optional
The list of work load for different devices,
in the same order as `ctx`.
"""
model = FeedForward(symbol, ctx=ctx, num_epoch=num_epoch,
epoch_size=epoch_size,
optimizer=optimizer, initializer=initializer, **kwargs)
model.fit(X, y, eval_data=eval_data, eval_metric=eval_metric,
epoch_end_callback=epoch_end_callback,
batch_end_callback=batch_end_callback,
kvstore=kvstore,
logger=logger,
work_load_list=work_load_list,
eval_end_callback=eval_end_callback,
eval_batch_end_callback=eval_batch_end_callback)
return model | def create(symbol, X, y=None, ctx=None,
num_epoch=None, epoch_size=None, optimizer='sgd', initializer=Uniform(0.01),
eval_data=None, eval_metric='acc',
epoch_end_callback=None, batch_end_callback=None,
kvstore='local', logger=None, work_load_list=None,
eval_end_callback=LogValidationMetricsCallback(),
eval_batch_end_callback=None, **kwargs):
"""Functional style to create a model.
This function is more consistent with functional
languages such as R, where mutation is not allowed.
Parameters
----------
symbol : Symbol
The symbol configuration of a computation network.
X : DataIter
Training data.
y : numpy.ndarray, optional
If `X` is a ``numpy.ndarray``, `y` must be set.
ctx : Context or list of Context, optional
The device context of training and prediction.
To use multi-GPU training, pass in a list of GPU contexts.
num_epoch : int, optional
The number of training epochs(epochs).
epoch_size : int, optional
Number of batches in a epoch. In default, it is set to
``ceil(num_train_examples / batch_size)``.
optimizer : str or Optimizer, optional
The name of the chosen optimizer, or an optimizer object, used for training.
initializer : initializer function, optional
The initialization scheme used.
eval_data : DataIter or numpy.ndarray pair
If `eval_set` is ``numpy.ndarray`` pair, it should
be (`valid_data`, `valid_label`).
eval_metric : metric.EvalMetric or str or callable
The evaluation metric. Can be the name of an evaluation metric
or a custom evaluation function that returns statistics
based on a minibatch.
epoch_end_callback : callable(epoch, symbol, arg_params, aux_states)
A callback that is invoked at end of each epoch.
This can be used to checkpoint model each epoch.
batch_end_callback: callable(epoch)
A callback that is invoked at end of each batch for print purposes.
kvstore: KVStore or str, optional
The KVStore or a string kvstore type: 'local', 'dist_sync', 'dis_async'.
Defaults to 'local', often no need to change for single machine.
logger : logging logger, optional
When not specified, default logger will be used.
work_load_list : list of float or int, optional
The list of work load for different devices,
in the same order as `ctx`.
"""
model = FeedForward(symbol, ctx=ctx, num_epoch=num_epoch,
epoch_size=epoch_size,
optimizer=optimizer, initializer=initializer, **kwargs)
model.fit(X, y, eval_data=eval_data, eval_metric=eval_metric,
epoch_end_callback=epoch_end_callback,
batch_end_callback=batch_end_callback,
kvstore=kvstore,
logger=logger,
work_load_list=work_load_list,
eval_end_callback=eval_end_callback,
eval_batch_end_callback=eval_batch_end_callback)
return model | [
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train | build_save_containers | Entry point to build and upload all built dockerimages in parallel
:param platforms: List of platforms
:param registry: Docker registry name
:param load_cache: Load cache before building
:return: 1 if error occurred, 0 otherwise | ci/docker_cache.py | def build_save_containers(platforms, registry, load_cache) -> int:
"""
Entry point to build and upload all built dockerimages in parallel
:param platforms: List of platforms
:param registry: Docker registry name
:param load_cache: Load cache before building
:return: 1 if error occurred, 0 otherwise
"""
from joblib import Parallel, delayed
if len(platforms) == 0:
return 0
platform_results = Parallel(n_jobs=PARALLEL_BUILDS, backend="multiprocessing")(
delayed(_build_save_container)(platform, registry, load_cache)
for platform in platforms)
is_error = False
for platform_result in platform_results:
if platform_result is not None:
logging.error('Failed to generate %s', platform_result)
is_error = True
return 1 if is_error else 0 | def build_save_containers(platforms, registry, load_cache) -> int:
"""
Entry point to build and upload all built dockerimages in parallel
:param platforms: List of platforms
:param registry: Docker registry name
:param load_cache: Load cache before building
:return: 1 if error occurred, 0 otherwise
"""
from joblib import Parallel, delayed
if len(platforms) == 0:
return 0
platform_results = Parallel(n_jobs=PARALLEL_BUILDS, backend="multiprocessing")(
delayed(_build_save_container)(platform, registry, load_cache)
for platform in platforms)
is_error = False
for platform_result in platform_results:
if platform_result is not None:
logging.error('Failed to generate %s', platform_result)
is_error = True
return 1 if is_error else 0 | [
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train | _build_save_container | Build image for passed platform and upload the cache to the specified S3 bucket
:param platform: Platform
:param registry: Docker registry name
:param load_cache: Load cache before building
:return: Platform if failed, None otherwise | ci/docker_cache.py | def _build_save_container(platform, registry, load_cache) -> Optional[str]:
"""
Build image for passed platform and upload the cache to the specified S3 bucket
:param platform: Platform
:param registry: Docker registry name
:param load_cache: Load cache before building
:return: Platform if failed, None otherwise
"""
docker_tag = build_util.get_docker_tag(platform=platform, registry=registry)
# Preload cache
if load_cache:
load_docker_cache(registry=registry, docker_tag=docker_tag)
# Start building
logging.debug('Building %s as %s', platform, docker_tag)
try:
# Increase the number of retries for building the cache.
image_id = build_util.build_docker(docker_binary='docker', platform=platform, registry=registry, num_retries=10, no_cache=False)
logging.info('Built %s as %s', docker_tag, image_id)
# Push cache to registry
_upload_image(registry=registry, docker_tag=docker_tag, image_id=image_id)
return None
except Exception:
logging.exception('Unexpected exception during build of %s', docker_tag)
return platform | def _build_save_container(platform, registry, load_cache) -> Optional[str]:
"""
Build image for passed platform and upload the cache to the specified S3 bucket
:param platform: Platform
:param registry: Docker registry name
:param load_cache: Load cache before building
:return: Platform if failed, None otherwise
"""
docker_tag = build_util.get_docker_tag(platform=platform, registry=registry)
# Preload cache
if load_cache:
load_docker_cache(registry=registry, docker_tag=docker_tag)
# Start building
logging.debug('Building %s as %s', platform, docker_tag)
try:
# Increase the number of retries for building the cache.
image_id = build_util.build_docker(docker_binary='docker', platform=platform, registry=registry, num_retries=10, no_cache=False)
logging.info('Built %s as %s', docker_tag, image_id)
# Push cache to registry
_upload_image(registry=registry, docker_tag=docker_tag, image_id=image_id)
return None
except Exception:
logging.exception('Unexpected exception during build of %s', docker_tag)
return platform | [
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train | _upload_image | Upload the passed image by id, tag it with docker tag and upload to S3 bucket
:param registry: Docker registry name
:param docker_tag: Docker tag
:param image_id: Image id
:return: None | ci/docker_cache.py | def _upload_image(registry, docker_tag, image_id) -> None:
"""
Upload the passed image by id, tag it with docker tag and upload to S3 bucket
:param registry: Docker registry name
:param docker_tag: Docker tag
:param image_id: Image id
:return: None
"""
# We don't have to retag the image since it is already in the right format
logging.info('Uploading %s (%s) to %s', docker_tag, image_id, registry)
push_cmd = ['docker', 'push', docker_tag]
subprocess.check_call(push_cmd) | def _upload_image(registry, docker_tag, image_id) -> None:
"""
Upload the passed image by id, tag it with docker tag and upload to S3 bucket
:param registry: Docker registry name
:param docker_tag: Docker tag
:param image_id: Image id
:return: None
"""
# We don't have to retag the image since it is already in the right format
logging.info('Uploading %s (%s) to %s', docker_tag, image_id, registry)
push_cmd = ['docker', 'push', docker_tag]
subprocess.check_call(push_cmd) | [
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train | _login_dockerhub | Login to the Docker Hub account
:return: None | ci/docker_cache.py | def _login_dockerhub():
"""
Login to the Docker Hub account
:return: None
"""
dockerhub_credentials = _get_dockerhub_credentials()
logging.info('Logging in to DockerHub')
# We use password-stdin instead of --password to avoid leaking passwords in case of an error.
# This method will produce the following output:
# > WARNING! Your password will be stored unencrypted in /home/jenkins_slave/.docker/config.json.
# > Configure a credential helper to remove this warning. See
# > https://docs.docker.com/engine/reference/commandline/login/#credentials-store
# Since we consider the restricted slaves a secure environment, that's fine. Also, using this will require
# third party applications which would need a review first as well.
p = subprocess.run(['docker', 'login', '--username', dockerhub_credentials['username'], '--password-stdin'],
stdout=subprocess.PIPE, input=str.encode(dockerhub_credentials['password']))
logging.info(p.stdout)
logging.info('Successfully logged in to DockerHub') | def _login_dockerhub():
"""
Login to the Docker Hub account
:return: None
"""
dockerhub_credentials = _get_dockerhub_credentials()
logging.info('Logging in to DockerHub')
# We use password-stdin instead of --password to avoid leaking passwords in case of an error.
# This method will produce the following output:
# > WARNING! Your password will be stored unencrypted in /home/jenkins_slave/.docker/config.json.
# > Configure a credential helper to remove this warning. See
# > https://docs.docker.com/engine/reference/commandline/login/#credentials-store
# Since we consider the restricted slaves a secure environment, that's fine. Also, using this will require
# third party applications which would need a review first as well.
p = subprocess.run(['docker', 'login', '--username', dockerhub_credentials['username'], '--password-stdin'],
stdout=subprocess.PIPE, input=str.encode(dockerhub_credentials['password']))
logging.info(p.stdout)
logging.info('Successfully logged in to DockerHub') | [
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train | load_docker_cache | Load the precompiled docker cache from the registry
:param registry: Docker registry name
:param docker_tag: Docker tag to load
:return: None | ci/docker_cache.py | def load_docker_cache(registry, docker_tag) -> None:
"""
Load the precompiled docker cache from the registry
:param registry: Docker registry name
:param docker_tag: Docker tag to load
:return: None
"""
# We don't have to retag the image since it's already in the right format
if not registry:
return
assert docker_tag
logging.info('Loading Docker cache for %s from %s', docker_tag, registry)
pull_cmd = ['docker', 'pull', docker_tag]
# Don't throw an error if the image does not exist
subprocess.run(pull_cmd, timeout=DOCKER_CACHE_TIMEOUT_MINS*60)
logging.info('Successfully pulled docker cache') | def load_docker_cache(registry, docker_tag) -> None:
"""
Load the precompiled docker cache from the registry
:param registry: Docker registry name
:param docker_tag: Docker tag to load
:return: None
"""
# We don't have to retag the image since it's already in the right format
if not registry:
return
assert docker_tag
logging.info('Loading Docker cache for %s from %s', docker_tag, registry)
pull_cmd = ['docker', 'pull', docker_tag]
# Don't throw an error if the image does not exist
subprocess.run(pull_cmd, timeout=DOCKER_CACHE_TIMEOUT_MINS*60)
logging.info('Successfully pulled docker cache') | [
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] | apache/incubator-mxnet | python | https://github.com/apache/incubator-mxnet/blob/1af29e9c060a4c7d60eeaacba32afdb9a7775ba7/ci/docker_cache.py#L149-L166 | [
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train | delete_local_docker_cache | Delete the local docker cache for the entire docker image chain
:param docker_tag: Docker tag
:return: None | ci/docker_cache.py | def delete_local_docker_cache(docker_tag):
"""
Delete the local docker cache for the entire docker image chain
:param docker_tag: Docker tag
:return: None
"""
history_cmd = ['docker', 'history', '-q', docker_tag]
try:
image_ids_b = subprocess.check_output(history_cmd)
image_ids_str = image_ids_b.decode('utf-8').strip()
layer_ids = [id.strip() for id in image_ids_str.split('\n') if id != '<missing>']
delete_cmd = ['docker', 'image', 'rm', '--force']
delete_cmd.extend(layer_ids)
subprocess.check_call(delete_cmd)
except subprocess.CalledProcessError as error:
# Could be caused by the image not being present
logging.debug('Error during local cache deletion %s', error) | def delete_local_docker_cache(docker_tag):
"""
Delete the local docker cache for the entire docker image chain
:param docker_tag: Docker tag
:return: None
"""
history_cmd = ['docker', 'history', '-q', docker_tag]
try:
image_ids_b = subprocess.check_output(history_cmd)
image_ids_str = image_ids_b.decode('utf-8').strip()
layer_ids = [id.strip() for id in image_ids_str.split('\n') if id != '<missing>']
delete_cmd = ['docker', 'image', 'rm', '--force']
delete_cmd.extend(layer_ids)
subprocess.check_call(delete_cmd)
except subprocess.CalledProcessError as error:
# Could be caused by the image not being present
logging.debug('Error during local cache deletion %s', error) | [
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train | main | Utility to create and publish the Docker cache to Docker Hub
:return: | ci/docker_cache.py | def main() -> int:
"""
Utility to create and publish the Docker cache to Docker Hub
:return:
"""
# We need to be in the same directory than the script so the commands in the dockerfiles work as
# expected. But the script can be invoked from a different path
base = os.path.split(os.path.realpath(__file__))[0]
os.chdir(base)
logging.getLogger().setLevel(logging.DEBUG)
logging.getLogger('botocore').setLevel(logging.INFO)
logging.getLogger('boto3').setLevel(logging.INFO)
logging.getLogger('urllib3').setLevel(logging.INFO)
logging.getLogger('s3transfer').setLevel(logging.INFO)
def script_name() -> str:
return os.path.split(sys.argv[0])[1]
logging.basicConfig(format='{}: %(asctime)-15s %(message)s'.format(script_name()))
parser = argparse.ArgumentParser(description="Utility for preserving and loading Docker cache", epilog="")
parser.add_argument("--docker-registry",
help="Docker hub registry name",
type=str,
required=True)
args = parser.parse_args()
platforms = build_util.get_platforms()
try:
_login_dockerhub()
return build_save_containers(platforms=platforms, registry=args.docker_registry, load_cache=True)
finally:
_logout_dockerhub() | def main() -> int:
"""
Utility to create and publish the Docker cache to Docker Hub
:return:
"""
# We need to be in the same directory than the script so the commands in the dockerfiles work as
# expected. But the script can be invoked from a different path
base = os.path.split(os.path.realpath(__file__))[0]
os.chdir(base)
logging.getLogger().setLevel(logging.DEBUG)
logging.getLogger('botocore').setLevel(logging.INFO)
logging.getLogger('boto3').setLevel(logging.INFO)
logging.getLogger('urllib3').setLevel(logging.INFO)
logging.getLogger('s3transfer').setLevel(logging.INFO)
def script_name() -> str:
return os.path.split(sys.argv[0])[1]
logging.basicConfig(format='{}: %(asctime)-15s %(message)s'.format(script_name()))
parser = argparse.ArgumentParser(description="Utility for preserving and loading Docker cache", epilog="")
parser.add_argument("--docker-registry",
help="Docker hub registry name",
type=str,
required=True)
args = parser.parse_args()
platforms = build_util.get_platforms()
try:
_login_dockerhub()
return build_save_containers(platforms=platforms, registry=args.docker_registry, load_cache=True)
finally:
_logout_dockerhub() | [
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train | get_chinese_text | Download the chinese_text dataset and unzip it | example/cnn_chinese_text_classification/data_helpers.py | def get_chinese_text():
"""Download the chinese_text dataset and unzip it"""
if not os.path.isdir("data/"):
os.system("mkdir data/")
if (not os.path.exists('data/pos.txt')) or \
(not os.path.exists('data/neg')):
os.system("wget -q https://raw.githubusercontent.com/dmlc/web-data/master/mxnet/example/chinese_text.zip "
"-P data/")
os.chdir("./data")
os.system("unzip -u chinese_text.zip")
os.chdir("..") | def get_chinese_text():
"""Download the chinese_text dataset and unzip it"""
if not os.path.isdir("data/"):
os.system("mkdir data/")
if (not os.path.exists('data/pos.txt')) or \
(not os.path.exists('data/neg')):
os.system("wget -q https://raw.githubusercontent.com/dmlc/web-data/master/mxnet/example/chinese_text.zip "
"-P data/")
os.chdir("./data")
os.system("unzip -u chinese_text.zip")
os.chdir("..") | [
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] | apache/incubator-mxnet | python | https://github.com/apache/incubator-mxnet/blob/1af29e9c060a4c7d60eeaacba32afdb9a7775ba7/example/cnn_chinese_text_classification/data_helpers.py#L51-L61 | [
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train | load_data_and_labels | Loads MR polarity data from files, splits the data into words and generates labels.
Returns split sentences and labels. | example/cnn_chinese_text_classification/data_helpers.py | def load_data_and_labels():
"""Loads MR polarity data from files, splits the data into words and generates labels.
Returns split sentences and labels.
"""
# download dataset
get_chinese_text()
# Load data from files
positive_examples = list(codecs.open("./data/pos.txt", "r", "utf-8").readlines())
positive_examples = [s.strip() for s in positive_examples]
positive_examples = [pe for pe in positive_examples if len(pe) < 100]
negative_examples = list(codecs.open("./data/neg.txt", "r", "utf-8").readlines())
negative_examples = [s.strip() for s in negative_examples]
negative_examples = [ne for ne in negative_examples if len(ne) < 100]
# Split by words
x_text = positive_examples + negative_examples
# x_text = [clean_str(sent) for sent in x_text]
x_text = [list(s) for s in x_text]
# Generate labels
positive_labels = [[0, 1] for _ in positive_examples]
negative_labels = [[1, 0] for _ in negative_examples]
y = np.concatenate([positive_labels, negative_labels], 0)
return [x_text, y] | def load_data_and_labels():
"""Loads MR polarity data from files, splits the data into words and generates labels.
Returns split sentences and labels.
"""
# download dataset
get_chinese_text()
# Load data from files
positive_examples = list(codecs.open("./data/pos.txt", "r", "utf-8").readlines())
positive_examples = [s.strip() for s in positive_examples]
positive_examples = [pe for pe in positive_examples if len(pe) < 100]
negative_examples = list(codecs.open("./data/neg.txt", "r", "utf-8").readlines())
negative_examples = [s.strip() for s in negative_examples]
negative_examples = [ne for ne in negative_examples if len(ne) < 100]
# Split by words
x_text = positive_examples + negative_examples
# x_text = [clean_str(sent) for sent in x_text]
x_text = [list(s) for s in x_text]
# Generate labels
positive_labels = [[0, 1] for _ in positive_examples]
negative_labels = [[1, 0] for _ in negative_examples]
y = np.concatenate([positive_labels, negative_labels], 0)
return [x_text, y] | [
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train | MultiBoxMetric.reset | override reset behavior | example/ssd/train/metric.py | def reset(self):
"""
override reset behavior
"""
if getattr(self, 'num', None) is None:
self.num_inst = 0
self.sum_metric = 0.0
else:
self.num_inst = [0] * self.num
self.sum_metric = [0.0] * self.num | def reset(self):
"""
override reset behavior
"""
if getattr(self, 'num', None) is None:
self.num_inst = 0
self.sum_metric = 0.0
else:
self.num_inst = [0] * self.num
self.sum_metric = [0.0] * self.num | [
"override",
"reset",
"behavior"
] | apache/incubator-mxnet | python | https://github.com/apache/incubator-mxnet/blob/1af29e9c060a4c7d60eeaacba32afdb9a7775ba7/example/ssd/train/metric.py#L31-L40 | [
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train | MultiBoxMetric.reset_local | override reset behavior | example/ssd/train/metric.py | def reset_local(self):
"""
override reset behavior
"""
if getattr(self, 'num', None) is None:
self.num_inst = 0
self.sum_metric = 0.0
else:
self.num_inst = [0] * self.num
self.sum_metric = [0.0] * self.num | def reset_local(self):
"""
override reset behavior
"""
if getattr(self, 'num', None) is None:
self.num_inst = 0
self.sum_metric = 0.0
else:
self.num_inst = [0] * self.num
self.sum_metric = [0.0] * self.num | [
"override",
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] | apache/incubator-mxnet | python | https://github.com/apache/incubator-mxnet/blob/1af29e9c060a4c7d60eeaacba32afdb9a7775ba7/example/ssd/train/metric.py#L42-L51 | [
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train | MultiBoxMetric.update | Implementation of updating metrics | example/ssd/train/metric.py | def update(self, labels, preds):
"""
Implementation of updating metrics
"""
# get generated multi label from network
cls_prob = preds[0].asnumpy()
loc_loss = preds[1].asnumpy()
cls_label = preds[2].asnumpy()
valid_count = np.sum(cls_label >= 0)
# overall accuracy & object accuracy
label = cls_label.flatten()
mask = np.where(label >= 0)[0]
indices = np.int64(label[mask])
prob = cls_prob.transpose((0, 2, 1)).reshape((-1, cls_prob.shape[1]))
prob = prob[mask, indices]
self.sum_metric[0] += (-np.log(prob + self.eps)).sum()
self.num_inst[0] += valid_count
# smoothl1loss
self.sum_metric[1] += np.sum(loc_loss)
self.num_inst[1] += valid_count | def update(self, labels, preds):
"""
Implementation of updating metrics
"""
# get generated multi label from network
cls_prob = preds[0].asnumpy()
loc_loss = preds[1].asnumpy()
cls_label = preds[2].asnumpy()
valid_count = np.sum(cls_label >= 0)
# overall accuracy & object accuracy
label = cls_label.flatten()
mask = np.where(label >= 0)[0]
indices = np.int64(label[mask])
prob = cls_prob.transpose((0, 2, 1)).reshape((-1, cls_prob.shape[1]))
prob = prob[mask, indices]
self.sum_metric[0] += (-np.log(prob + self.eps)).sum()
self.num_inst[0] += valid_count
# smoothl1loss
self.sum_metric[1] += np.sum(loc_loss)
self.num_inst[1] += valid_count | [
"Implementation",
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] | apache/incubator-mxnet | python | https://github.com/apache/incubator-mxnet/blob/1af29e9c060a4c7d60eeaacba32afdb9a7775ba7/example/ssd/train/metric.py#L53-L72 | [
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train | MultiBoxMetric.get | Get the current evaluation result.
Override the default behavior
Returns
-------
name : str
Name of the metric.
value : float
Value of the evaluation. | example/ssd/train/metric.py | def get(self):
"""Get the current evaluation result.
Override the default behavior
Returns
-------
name : str
Name of the metric.
value : float
Value of the evaluation.
"""
if self.num is None:
if self.num_inst == 0:
return (self.name, float('nan'))
else:
return (self.name, self.sum_metric / self.num_inst)
else:
names = ['%s'%(self.name[i]) for i in range(self.num)]
values = [x / y if y != 0 else float('nan') \
for x, y in zip(self.sum_metric, self.num_inst)]
return (names, values) | def get(self):
"""Get the current evaluation result.
Override the default behavior
Returns
-------
name : str
Name of the metric.
value : float
Value of the evaluation.
"""
if self.num is None:
if self.num_inst == 0:
return (self.name, float('nan'))
else:
return (self.name, self.sum_metric / self.num_inst)
else:
names = ['%s'%(self.name[i]) for i in range(self.num)]
values = [x / y if y != 0 else float('nan') \
for x, y in zip(self.sum_metric, self.num_inst)]
return (names, values) | [
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] | apache/incubator-mxnet | python | https://github.com/apache/incubator-mxnet/blob/1af29e9c060a4c7d60eeaacba32afdb9a7775ba7/example/ssd/train/metric.py#L74-L94 | [
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train | dqn_sym_nips | Structure of the Deep Q Network in the NIPS 2013 workshop paper:
Playing Atari with Deep Reinforcement Learning (https://www.cs.toronto.edu/~vmnih/docs/dqn.pdf)
Parameters
----------
action_num : int
data : mxnet.sym.Symbol, optional
name : str, optional | example/reinforcement-learning/dqn/operators.py | def dqn_sym_nips(action_num, data=None, name='dqn'):
"""Structure of the Deep Q Network in the NIPS 2013 workshop paper:
Playing Atari with Deep Reinforcement Learning (https://www.cs.toronto.edu/~vmnih/docs/dqn.pdf)
Parameters
----------
action_num : int
data : mxnet.sym.Symbol, optional
name : str, optional
"""
if data is None:
net = mx.symbol.Variable('data')
else:
net = data
net = mx.symbol.Convolution(data=net, name='conv1', kernel=(8, 8), stride=(4, 4), num_filter=16)
net = mx.symbol.Activation(data=net, name='relu1', act_type="relu")
net = mx.symbol.Convolution(data=net, name='conv2', kernel=(4, 4), stride=(2, 2), num_filter=32)
net = mx.symbol.Activation(data=net, name='relu2', act_type="relu")
net = mx.symbol.Flatten(data=net)
net = mx.symbol.FullyConnected(data=net, name='fc3', num_hidden=256)
net = mx.symbol.Activation(data=net, name='relu3', act_type="relu")
net = mx.symbol.FullyConnected(data=net, name='fc4', num_hidden=action_num)
net = mx.symbol.Custom(data=net, name=name, op_type='DQNOutput')
return net | def dqn_sym_nips(action_num, data=None, name='dqn'):
"""Structure of the Deep Q Network in the NIPS 2013 workshop paper:
Playing Atari with Deep Reinforcement Learning (https://www.cs.toronto.edu/~vmnih/docs/dqn.pdf)
Parameters
----------
action_num : int
data : mxnet.sym.Symbol, optional
name : str, optional
"""
if data is None:
net = mx.symbol.Variable('data')
else:
net = data
net = mx.symbol.Convolution(data=net, name='conv1', kernel=(8, 8), stride=(4, 4), num_filter=16)
net = mx.symbol.Activation(data=net, name='relu1', act_type="relu")
net = mx.symbol.Convolution(data=net, name='conv2', kernel=(4, 4), stride=(2, 2), num_filter=32)
net = mx.symbol.Activation(data=net, name='relu2', act_type="relu")
net = mx.symbol.Flatten(data=net)
net = mx.symbol.FullyConnected(data=net, name='fc3', num_hidden=256)
net = mx.symbol.Activation(data=net, name='relu3', act_type="relu")
net = mx.symbol.FullyConnected(data=net, name='fc4', num_hidden=action_num)
net = mx.symbol.Custom(data=net, name=name, op_type='DQNOutput')
return net | [
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train | _monitor_callback_wrapper | A wrapper for the user-defined handle. | python/mxnet/executor.py | def _monitor_callback_wrapper(callback):
"""A wrapper for the user-defined handle."""
def callback_handle(name, array, _):
""" ctypes function """
callback(name, array)
return callback_handle | def _monitor_callback_wrapper(callback):
"""A wrapper for the user-defined handle."""
def callback_handle(name, array, _):
""" ctypes function """
callback(name, array)
return callback_handle | [
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train | Executor._get_dict | Get the dictionary given name and ndarray pairs. | python/mxnet/executor.py | def _get_dict(names, ndarrays):
"""Get the dictionary given name and ndarray pairs."""
nset = set()
for nm in names:
if nm in nset:
raise ValueError('Duplicate names detected, %s' % str(names))
nset.add(nm)
return dict(zip(names, ndarrays)) | def _get_dict(names, ndarrays):
"""Get the dictionary given name and ndarray pairs."""
nset = set()
for nm in names:
if nm in nset:
raise ValueError('Duplicate names detected, %s' % str(names))
nset.add(nm)
return dict(zip(names, ndarrays)) | [
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train | Executor._get_outputs | List all the output NDArray.
Returns
-------
A list of ndarray bound to the heads of executor. | python/mxnet/executor.py | def _get_outputs(self):
"""List all the output NDArray.
Returns
-------
A list of ndarray bound to the heads of executor.
"""
out_size = mx_uint()
handles = ctypes.POINTER(NDArrayHandle)()
check_call(_LIB.MXExecutorOutputs(self.handle,
ctypes.byref(out_size), ctypes.byref(handles)))
num_output = out_size.value
outputs = [_ndarray_cls(NDArrayHandle(handles[i])) for i in range(num_output)]
return outputs | def _get_outputs(self):
"""List all the output NDArray.
Returns
-------
A list of ndarray bound to the heads of executor.
"""
out_size = mx_uint()
handles = ctypes.POINTER(NDArrayHandle)()
check_call(_LIB.MXExecutorOutputs(self.handle,
ctypes.byref(out_size), ctypes.byref(handles)))
num_output = out_size.value
outputs = [_ndarray_cls(NDArrayHandle(handles[i])) for i in range(num_output)]
return outputs | [
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train | Executor.forward | Calculate the outputs specified by the bound symbol.
Parameters
----------
is_train: bool, optional
Whether this forward is for evaluation purpose. If True,
a backward call is expected to follow.
**kwargs
Additional specification of input arguments.
Examples
--------
>>> # doing forward by specifying data
>>> texec.forward(is_train=True, data=mydata)
>>> # doing forward by not specifying things, but copy to the executor before hand
>>> mydata.copyto(texec.arg_dict['data'])
>>> texec.forward(is_train=True)
>>> # doing forward by specifying data and get outputs
>>> outputs = texec.forward(is_train=True, data=mydata)
>>> print(outputs[0].asnumpy()) | python/mxnet/executor.py | def forward(self, is_train=False, **kwargs):
"""Calculate the outputs specified by the bound symbol.
Parameters
----------
is_train: bool, optional
Whether this forward is for evaluation purpose. If True,
a backward call is expected to follow.
**kwargs
Additional specification of input arguments.
Examples
--------
>>> # doing forward by specifying data
>>> texec.forward(is_train=True, data=mydata)
>>> # doing forward by not specifying things, but copy to the executor before hand
>>> mydata.copyto(texec.arg_dict['data'])
>>> texec.forward(is_train=True)
>>> # doing forward by specifying data and get outputs
>>> outputs = texec.forward(is_train=True, data=mydata)
>>> print(outputs[0].asnumpy())
"""
if len(kwargs) != 0:
arg_dict = self.arg_dict
for name, array in kwargs.items():
if not isinstance(array, (NDArray, np.ndarray)):
raise ValueError('only accept keyword argument of NDArrays and numpy.ndarray')
if name not in arg_dict:
raise TypeError('Unknown argument %s' % name)
if arg_dict[name].shape != array.shape:
raise ValueError('Shape not match! Argument %s, need: %s, received: %s'
%(name, str(arg_dict[name].shape), str(array.shape)))
arg_dict[name][:] = array
check_call(_LIB.MXExecutorForward(
self.handle,
ctypes.c_int(int(is_train))))
return self.outputs | def forward(self, is_train=False, **kwargs):
"""Calculate the outputs specified by the bound symbol.
Parameters
----------
is_train: bool, optional
Whether this forward is for evaluation purpose. If True,
a backward call is expected to follow.
**kwargs
Additional specification of input arguments.
Examples
--------
>>> # doing forward by specifying data
>>> texec.forward(is_train=True, data=mydata)
>>> # doing forward by not specifying things, but copy to the executor before hand
>>> mydata.copyto(texec.arg_dict['data'])
>>> texec.forward(is_train=True)
>>> # doing forward by specifying data and get outputs
>>> outputs = texec.forward(is_train=True, data=mydata)
>>> print(outputs[0].asnumpy())
"""
if len(kwargs) != 0:
arg_dict = self.arg_dict
for name, array in kwargs.items():
if not isinstance(array, (NDArray, np.ndarray)):
raise ValueError('only accept keyword argument of NDArrays and numpy.ndarray')
if name not in arg_dict:
raise TypeError('Unknown argument %s' % name)
if arg_dict[name].shape != array.shape:
raise ValueError('Shape not match! Argument %s, need: %s, received: %s'
%(name, str(arg_dict[name].shape), str(array.shape)))
arg_dict[name][:] = array
check_call(_LIB.MXExecutorForward(
self.handle,
ctypes.c_int(int(is_train))))
return self.outputs | [
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train | Executor.backward | Do backward pass to get the gradient of arguments.
Parameters
----------
out_grads : NDArray or list of NDArray or dict of str to NDArray, optional
Gradient on the outputs to be propagated back.
This parameter is only needed when bind is called
on outputs that are not a loss function.
is_train : bool, default True
Whether this backward is for training or inference. Note that in rare
cases you want to call backward with is_train=False to get gradient
during inference.
Examples
--------
>>> # Example for binding on loss function symbol, which gives the loss value of the model.
>>> # Equivalently it gives the head gradient for backward pass.
>>> # In this example the built-in SoftmaxOutput is used as loss function.
>>> # MakeLoss can be used to define customized loss function symbol.
>>> net = mx.sym.Variable('data')
>>> net = mx.sym.FullyConnected(net, name='fc', num_hidden=6)
>>> net = mx.sym.Activation(net, name='relu', act_type="relu")
>>> net = mx.sym.SoftmaxOutput(net, name='softmax')
>>> args = {'data': mx.nd.ones((1, 4)), 'fc_weight': mx.nd.ones((6, 4)),
>>> 'fc_bias': mx.nd.array((1, 4, 4, 4, 5, 6)), 'softmax_label': mx.nd.ones((1))}
>>> args_grad = {'fc_weight': mx.nd.zeros((6, 4)), 'fc_bias': mx.nd.zeros((6))}
>>> texec = net.bind(ctx=mx.cpu(), args=args, args_grad=args_grad)
>>> out = texec.forward(is_train=True)[0].copy()
>>> print out.asnumpy()
[[ 0.00378404 0.07600445 0.07600445 0.07600445 0.20660152 0.5616011 ]]
>>> texec.backward()
>>> print(texec.grad_arrays[1].asnumpy())
[[ 0.00378404 0.00378404 0.00378404 0.00378404]
[-0.92399555 -0.92399555 -0.92399555 -0.92399555]
[ 0.07600445 0.07600445 0.07600445 0.07600445]
[ 0.07600445 0.07600445 0.07600445 0.07600445]
[ 0.20660152 0.20660152 0.20660152 0.20660152]
[ 0.5616011 0.5616011 0.5616011 0.5616011 ]]
>>>
>>> # Example for binding on non-loss function symbol.
>>> # Here the binding symbol is neither built-in loss function
>>> # nor customized loss created by MakeLoss.
>>> # As a result the head gradient is not automatically provided.
>>> a = mx.sym.Variable('a')
>>> b = mx.sym.Variable('b')
>>> # c is not a loss function symbol
>>> c = 2 * a + b
>>> args = {'a': mx.nd.array([1,2]), 'b':mx.nd.array([2,3])}
>>> args_grad = {'a': mx.nd.zeros((2)), 'b': mx.nd.zeros((2))}
>>> texec = c.bind(ctx=mx.cpu(), args=args, args_grad=args_grad)
>>> out = texec.forward(is_train=True)[0].copy()
>>> print(out.asnumpy())
[ 4. 7.]
>>> # out_grads is the head gradient in backward pass.
>>> # Here we define 'c' as loss function.
>>> # Then 'out' is passed as head gradient of backward pass.
>>> texec.backward(out)
>>> print(texec.grad_arrays[0].asnumpy())
[ 8. 14.]
>>> print(texec.grad_arrays[1].asnumpy())
[ 4. 7.] | python/mxnet/executor.py | def backward(self, out_grads=None, is_train=True):
"""Do backward pass to get the gradient of arguments.
Parameters
----------
out_grads : NDArray or list of NDArray or dict of str to NDArray, optional
Gradient on the outputs to be propagated back.
This parameter is only needed when bind is called
on outputs that are not a loss function.
is_train : bool, default True
Whether this backward is for training or inference. Note that in rare
cases you want to call backward with is_train=False to get gradient
during inference.
Examples
--------
>>> # Example for binding on loss function symbol, which gives the loss value of the model.
>>> # Equivalently it gives the head gradient for backward pass.
>>> # In this example the built-in SoftmaxOutput is used as loss function.
>>> # MakeLoss can be used to define customized loss function symbol.
>>> net = mx.sym.Variable('data')
>>> net = mx.sym.FullyConnected(net, name='fc', num_hidden=6)
>>> net = mx.sym.Activation(net, name='relu', act_type="relu")
>>> net = mx.sym.SoftmaxOutput(net, name='softmax')
>>> args = {'data': mx.nd.ones((1, 4)), 'fc_weight': mx.nd.ones((6, 4)),
>>> 'fc_bias': mx.nd.array((1, 4, 4, 4, 5, 6)), 'softmax_label': mx.nd.ones((1))}
>>> args_grad = {'fc_weight': mx.nd.zeros((6, 4)), 'fc_bias': mx.nd.zeros((6))}
>>> texec = net.bind(ctx=mx.cpu(), args=args, args_grad=args_grad)
>>> out = texec.forward(is_train=True)[0].copy()
>>> print out.asnumpy()
[[ 0.00378404 0.07600445 0.07600445 0.07600445 0.20660152 0.5616011 ]]
>>> texec.backward()
>>> print(texec.grad_arrays[1].asnumpy())
[[ 0.00378404 0.00378404 0.00378404 0.00378404]
[-0.92399555 -0.92399555 -0.92399555 -0.92399555]
[ 0.07600445 0.07600445 0.07600445 0.07600445]
[ 0.07600445 0.07600445 0.07600445 0.07600445]
[ 0.20660152 0.20660152 0.20660152 0.20660152]
[ 0.5616011 0.5616011 0.5616011 0.5616011 ]]
>>>
>>> # Example for binding on non-loss function symbol.
>>> # Here the binding symbol is neither built-in loss function
>>> # nor customized loss created by MakeLoss.
>>> # As a result the head gradient is not automatically provided.
>>> a = mx.sym.Variable('a')
>>> b = mx.sym.Variable('b')
>>> # c is not a loss function symbol
>>> c = 2 * a + b
>>> args = {'a': mx.nd.array([1,2]), 'b':mx.nd.array([2,3])}
>>> args_grad = {'a': mx.nd.zeros((2)), 'b': mx.nd.zeros((2))}
>>> texec = c.bind(ctx=mx.cpu(), args=args, args_grad=args_grad)
>>> out = texec.forward(is_train=True)[0].copy()
>>> print(out.asnumpy())
[ 4. 7.]
>>> # out_grads is the head gradient in backward pass.
>>> # Here we define 'c' as loss function.
>>> # Then 'out' is passed as head gradient of backward pass.
>>> texec.backward(out)
>>> print(texec.grad_arrays[0].asnumpy())
[ 8. 14.]
>>> print(texec.grad_arrays[1].asnumpy())
[ 4. 7.]
"""
if out_grads is None:
out_grads = []
elif isinstance(out_grads, NDArray):
out_grads = [out_grads]
elif isinstance(out_grads, dict):
out_grads = [out_grads[k] for k in self._symbol.list_outputs()]
for obj in out_grads:
if not isinstance(obj, NDArray):
raise TypeError("inputs must be NDArray")
ndarray = c_handle_array(out_grads)
check_call(_LIB.MXExecutorBackwardEx(
self.handle,
mx_uint(len(out_grads)),
ndarray,
ctypes.c_int(is_train))) | def backward(self, out_grads=None, is_train=True):
"""Do backward pass to get the gradient of arguments.
Parameters
----------
out_grads : NDArray or list of NDArray or dict of str to NDArray, optional
Gradient on the outputs to be propagated back.
This parameter is only needed when bind is called
on outputs that are not a loss function.
is_train : bool, default True
Whether this backward is for training or inference. Note that in rare
cases you want to call backward with is_train=False to get gradient
during inference.
Examples
--------
>>> # Example for binding on loss function symbol, which gives the loss value of the model.
>>> # Equivalently it gives the head gradient for backward pass.
>>> # In this example the built-in SoftmaxOutput is used as loss function.
>>> # MakeLoss can be used to define customized loss function symbol.
>>> net = mx.sym.Variable('data')
>>> net = mx.sym.FullyConnected(net, name='fc', num_hidden=6)
>>> net = mx.sym.Activation(net, name='relu', act_type="relu")
>>> net = mx.sym.SoftmaxOutput(net, name='softmax')
>>> args = {'data': mx.nd.ones((1, 4)), 'fc_weight': mx.nd.ones((6, 4)),
>>> 'fc_bias': mx.nd.array((1, 4, 4, 4, 5, 6)), 'softmax_label': mx.nd.ones((1))}
>>> args_grad = {'fc_weight': mx.nd.zeros((6, 4)), 'fc_bias': mx.nd.zeros((6))}
>>> texec = net.bind(ctx=mx.cpu(), args=args, args_grad=args_grad)
>>> out = texec.forward(is_train=True)[0].copy()
>>> print out.asnumpy()
[[ 0.00378404 0.07600445 0.07600445 0.07600445 0.20660152 0.5616011 ]]
>>> texec.backward()
>>> print(texec.grad_arrays[1].asnumpy())
[[ 0.00378404 0.00378404 0.00378404 0.00378404]
[-0.92399555 -0.92399555 -0.92399555 -0.92399555]
[ 0.07600445 0.07600445 0.07600445 0.07600445]
[ 0.07600445 0.07600445 0.07600445 0.07600445]
[ 0.20660152 0.20660152 0.20660152 0.20660152]
[ 0.5616011 0.5616011 0.5616011 0.5616011 ]]
>>>
>>> # Example for binding on non-loss function symbol.
>>> # Here the binding symbol is neither built-in loss function
>>> # nor customized loss created by MakeLoss.
>>> # As a result the head gradient is not automatically provided.
>>> a = mx.sym.Variable('a')
>>> b = mx.sym.Variable('b')
>>> # c is not a loss function symbol
>>> c = 2 * a + b
>>> args = {'a': mx.nd.array([1,2]), 'b':mx.nd.array([2,3])}
>>> args_grad = {'a': mx.nd.zeros((2)), 'b': mx.nd.zeros((2))}
>>> texec = c.bind(ctx=mx.cpu(), args=args, args_grad=args_grad)
>>> out = texec.forward(is_train=True)[0].copy()
>>> print(out.asnumpy())
[ 4. 7.]
>>> # out_grads is the head gradient in backward pass.
>>> # Here we define 'c' as loss function.
>>> # Then 'out' is passed as head gradient of backward pass.
>>> texec.backward(out)
>>> print(texec.grad_arrays[0].asnumpy())
[ 8. 14.]
>>> print(texec.grad_arrays[1].asnumpy())
[ 4. 7.]
"""
if out_grads is None:
out_grads = []
elif isinstance(out_grads, NDArray):
out_grads = [out_grads]
elif isinstance(out_grads, dict):
out_grads = [out_grads[k] for k in self._symbol.list_outputs()]
for obj in out_grads:
if not isinstance(obj, NDArray):
raise TypeError("inputs must be NDArray")
ndarray = c_handle_array(out_grads)
check_call(_LIB.MXExecutorBackwardEx(
self.handle,
mx_uint(len(out_grads)),
ndarray,
ctypes.c_int(is_train))) | [
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train | Executor.set_monitor_callback | Install callback for monitor.
Parameters
----------
callback : function
Takes a string and an NDArrayHandle.
monitor_all : bool, default False
If true, monitor both input and output, otherwise monitor output only.
Examples
--------
>>> def mon_callback(*args, **kwargs):
>>> print("Do your stuff here.")
>>>
>>> texe.set_monitor_callback(mon_callback) | python/mxnet/executor.py | def set_monitor_callback(self, callback, monitor_all=False):
"""Install callback for monitor.
Parameters
----------
callback : function
Takes a string and an NDArrayHandle.
monitor_all : bool, default False
If true, monitor both input and output, otherwise monitor output only.
Examples
--------
>>> def mon_callback(*args, **kwargs):
>>> print("Do your stuff here.")
>>>
>>> texe.set_monitor_callback(mon_callback)
"""
cb_type = ctypes.CFUNCTYPE(None, ctypes.c_char_p, NDArrayHandle, ctypes.c_void_p)
self._monitor_callback = cb_type(_monitor_callback_wrapper(callback))
check_call(_LIB.MXExecutorSetMonitorCallbackEX(
self.handle,
self._monitor_callback,
None,
ctypes.c_int(monitor_all))) | def set_monitor_callback(self, callback, monitor_all=False):
"""Install callback for monitor.
Parameters
----------
callback : function
Takes a string and an NDArrayHandle.
monitor_all : bool, default False
If true, monitor both input and output, otherwise monitor output only.
Examples
--------
>>> def mon_callback(*args, **kwargs):
>>> print("Do your stuff here.")
>>>
>>> texe.set_monitor_callback(mon_callback)
"""
cb_type = ctypes.CFUNCTYPE(None, ctypes.c_char_p, NDArrayHandle, ctypes.c_void_p)
self._monitor_callback = cb_type(_monitor_callback_wrapper(callback))
check_call(_LIB.MXExecutorSetMonitorCallbackEX(
self.handle,
self._monitor_callback,
None,
ctypes.c_int(monitor_all))) | [
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train | Executor.arg_dict | Get dictionary representation of argument arrrays.
Returns
-------
arg_dict : dict of str to NDArray
The dictionary that maps the names of arguments to NDArrays.
Raises
------
ValueError : if there are duplicated names in the arguments. | python/mxnet/executor.py | def arg_dict(self):
"""Get dictionary representation of argument arrrays.
Returns
-------
arg_dict : dict of str to NDArray
The dictionary that maps the names of arguments to NDArrays.
Raises
------
ValueError : if there are duplicated names in the arguments.
"""
if self._arg_dict is None:
self._arg_dict = Executor._get_dict(
self._symbol.list_arguments(), self.arg_arrays)
return self._arg_dict | def arg_dict(self):
"""Get dictionary representation of argument arrrays.
Returns
-------
arg_dict : dict of str to NDArray
The dictionary that maps the names of arguments to NDArrays.
Raises
------
ValueError : if there are duplicated names in the arguments.
"""
if self._arg_dict is None:
self._arg_dict = Executor._get_dict(
self._symbol.list_arguments(), self.arg_arrays)
return self._arg_dict | [
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train | Executor.grad_dict | Get dictionary representation of gradient arrays.
Returns
-------
grad_dict : dict of str to NDArray
The dictionary that maps name of arguments to gradient arrays. | python/mxnet/executor.py | def grad_dict(self):
"""Get dictionary representation of gradient arrays.
Returns
-------
grad_dict : dict of str to NDArray
The dictionary that maps name of arguments to gradient arrays.
"""
if self._grad_dict is None:
self._grad_dict = Executor._get_dict(
self._symbol.list_arguments(), self.grad_arrays)
return self._grad_dict | def grad_dict(self):
"""Get dictionary representation of gradient arrays.
Returns
-------
grad_dict : dict of str to NDArray
The dictionary that maps name of arguments to gradient arrays.
"""
if self._grad_dict is None:
self._grad_dict = Executor._get_dict(
self._symbol.list_arguments(), self.grad_arrays)
return self._grad_dict | [
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train | Executor.aux_dict | Get dictionary representation of auxiliary states arrays.
Returns
-------
aux_dict : dict of str to NDArray
The dictionary that maps name of auxiliary states to NDArrays.
Raises
------
ValueError : if there are duplicated names in the auxiliary states. | python/mxnet/executor.py | def aux_dict(self):
"""Get dictionary representation of auxiliary states arrays.
Returns
-------
aux_dict : dict of str to NDArray
The dictionary that maps name of auxiliary states to NDArrays.
Raises
------
ValueError : if there are duplicated names in the auxiliary states.
"""
if self._aux_dict is None:
self._aux_dict = Executor._get_dict(
self._symbol.list_auxiliary_states(), self.aux_arrays)
return self._aux_dict | def aux_dict(self):
"""Get dictionary representation of auxiliary states arrays.
Returns
-------
aux_dict : dict of str to NDArray
The dictionary that maps name of auxiliary states to NDArrays.
Raises
------
ValueError : if there are duplicated names in the auxiliary states.
"""
if self._aux_dict is None:
self._aux_dict = Executor._get_dict(
self._symbol.list_auxiliary_states(), self.aux_arrays)
return self._aux_dict | [
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train | Executor.output_dict | Get dictionary representation of output arrays.
Returns
-------
output_dict : dict of str to NDArray
The dictionary that maps name of output names to NDArrays.
Raises
------
ValueError : if there are duplicated names in the outputs. | python/mxnet/executor.py | def output_dict(self):
"""Get dictionary representation of output arrays.
Returns
-------
output_dict : dict of str to NDArray
The dictionary that maps name of output names to NDArrays.
Raises
------
ValueError : if there are duplicated names in the outputs.
"""
if self._output_dict is None:
self._output_dict = Executor._get_dict(
self._symbol.list_outputs(), self.outputs)
return self._output_dict | def output_dict(self):
"""Get dictionary representation of output arrays.
Returns
-------
output_dict : dict of str to NDArray
The dictionary that maps name of output names to NDArrays.
Raises
------
ValueError : if there are duplicated names in the outputs.
"""
if self._output_dict is None:
self._output_dict = Executor._get_dict(
self._symbol.list_outputs(), self.outputs)
return self._output_dict | [
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train | Executor.copy_params_from | Copy parameters from arg_params, aux_params into executor's internal array.
Parameters
----------
arg_params : dict of str to NDArray
Parameters, dict of name to NDArray of arguments.
aux_params : dict of str to NDArray, optional
Parameters, dict of name to NDArray of auxiliary states.
allow_extra_params : boolean, optional
Whether allow extra parameters that are not needed by symbol.
If this is True, no error will be thrown when arg_params or aux_params
contain extra parameters that is not needed by the executor.
Raises
------
ValueError
If there is additional parameters in the dict but ``allow_extra_params=False``.
Examples
--------
>>> # set parameters with existing model checkpoint
>>> model_prefix = 'mx_mlp'
>>> sym, arg_params, aux_params = mx.model.load_checkpoint(model_prefix, 0)
>>> texec.copy_params_from(arg_params, aux_params) | python/mxnet/executor.py | def copy_params_from(self, arg_params, aux_params=None, allow_extra_params=False):
"""Copy parameters from arg_params, aux_params into executor's internal array.
Parameters
----------
arg_params : dict of str to NDArray
Parameters, dict of name to NDArray of arguments.
aux_params : dict of str to NDArray, optional
Parameters, dict of name to NDArray of auxiliary states.
allow_extra_params : boolean, optional
Whether allow extra parameters that are not needed by symbol.
If this is True, no error will be thrown when arg_params or aux_params
contain extra parameters that is not needed by the executor.
Raises
------
ValueError
If there is additional parameters in the dict but ``allow_extra_params=False``.
Examples
--------
>>> # set parameters with existing model checkpoint
>>> model_prefix = 'mx_mlp'
>>> sym, arg_params, aux_params = mx.model.load_checkpoint(model_prefix, 0)
>>> texec.copy_params_from(arg_params, aux_params)
"""
for name, array in arg_params.items():
if name in self.arg_dict:
dst = self.arg_dict[name]
array.astype(dst.dtype).copyto(dst)
elif not allow_extra_params:
raise ValueError('Find name \"%s\" that is not in the arguments' % name)
if aux_params is None:
return
for name, array in aux_params.items():
if name in self.aux_dict:
dst = self.aux_dict[name]
array.astype(dst.dtype).copyto(dst)
elif not allow_extra_params:
raise ValueError('Find name %s that is not in the auxiliary states' % name) | def copy_params_from(self, arg_params, aux_params=None, allow_extra_params=False):
"""Copy parameters from arg_params, aux_params into executor's internal array.
Parameters
----------
arg_params : dict of str to NDArray
Parameters, dict of name to NDArray of arguments.
aux_params : dict of str to NDArray, optional
Parameters, dict of name to NDArray of auxiliary states.
allow_extra_params : boolean, optional
Whether allow extra parameters that are not needed by symbol.
If this is True, no error will be thrown when arg_params or aux_params
contain extra parameters that is not needed by the executor.
Raises
------
ValueError
If there is additional parameters in the dict but ``allow_extra_params=False``.
Examples
--------
>>> # set parameters with existing model checkpoint
>>> model_prefix = 'mx_mlp'
>>> sym, arg_params, aux_params = mx.model.load_checkpoint(model_prefix, 0)
>>> texec.copy_params_from(arg_params, aux_params)
"""
for name, array in arg_params.items():
if name in self.arg_dict:
dst = self.arg_dict[name]
array.astype(dst.dtype).copyto(dst)
elif not allow_extra_params:
raise ValueError('Find name \"%s\" that is not in the arguments' % name)
if aux_params is None:
return
for name, array in aux_params.items():
if name in self.aux_dict:
dst = self.aux_dict[name]
array.astype(dst.dtype).copyto(dst)
elif not allow_extra_params:
raise ValueError('Find name %s that is not in the auxiliary states' % name) | [
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train | Executor.reshape | Return a new executor with the same symbol and shared memory,
but different input/output shapes.
For runtime reshaping, variable length sequences, etc.
The returned executor shares state with the current one,
and cannot be used in parallel with it.
Parameters
----------
partial_shaping : bool
Whether to allow changing the shape of unspecified arguments.
allow_up_sizing : bool
Whether to allow allocating new ndarrays that's larger than the original.
kwargs : dict of string to tuple of int
New shape for arguments.
Returns
-------
exec : Executor
A new executor that shares memory with self.
Examples
--------
>>> a = mx.sym.Variable('a')
>>> b = mx.sym.Variable('b')
>>> c = 2 * a + b
>>> texec = c.bind(mx.cpu(), {'a': mx.nd.zeros((2, 1)), 'b': mx.nd.ones((2,1))})
>>> new_shape = {'a': (4, 2), 'b': (4, 2)}
>>> texec.reshape(allow_up_sizing=True, **new_shape) | python/mxnet/executor.py | def reshape(self, partial_shaping=False, allow_up_sizing=False, **kwargs):
"""Return a new executor with the same symbol and shared memory,
but different input/output shapes.
For runtime reshaping, variable length sequences, etc.
The returned executor shares state with the current one,
and cannot be used in parallel with it.
Parameters
----------
partial_shaping : bool
Whether to allow changing the shape of unspecified arguments.
allow_up_sizing : bool
Whether to allow allocating new ndarrays that's larger than the original.
kwargs : dict of string to tuple of int
New shape for arguments.
Returns
-------
exec : Executor
A new executor that shares memory with self.
Examples
--------
>>> a = mx.sym.Variable('a')
>>> b = mx.sym.Variable('b')
>>> c = 2 * a + b
>>> texec = c.bind(mx.cpu(), {'a': mx.nd.zeros((2, 1)), 'b': mx.nd.ones((2,1))})
>>> new_shape = {'a': (4, 2), 'b': (4, 2)}
>>> texec.reshape(allow_up_sizing=True, **new_shape)
"""
# pylint: disable=too-many-branches
provided_arg_shape_data = [] # shape data
# argument shape index in sdata,
# e.g. [sdata[indptr[0]], sdata[indptr[1]]) is the shape of the first arg
provided_arg_shape_idx = [0]
provided_arg_shape_names = [] # provided argument names
for k, v in kwargs.items():
if isinstance(v, tuple):
provided_arg_shape_names.append(k)
provided_arg_shape_data.extend(v)
provided_arg_shape_idx.append(len(provided_arg_shape_data))
ctx_map_keys = []
ctx_map_dev_types = []
ctx_map_dev_ids = []
if self._group2ctx:
for key, val in self._group2ctx.items():
ctx_map_keys.append(key)
ctx_map_dev_types.append(val.device_typeid)
ctx_map_dev_ids.append(val.device_id)
handle = ExecutorHandle()
shared_handle = self.handle
num_in_args = ctypes.c_uint()
in_arg_handles = ctypes.POINTER(NDArrayHandle)()
arg_grad_handles = ctypes.POINTER(NDArrayHandle)()
num_aux_states = ctypes.c_uint()
aux_state_handles = ctypes.POINTER(NDArrayHandle)()
check_call(_LIB.MXExecutorReshapeEx(ctypes.c_int(int(partial_shaping)),
ctypes.c_int(int(allow_up_sizing)),
ctypes.c_int(self._ctx.device_typeid),
ctypes.c_int(self._ctx.device_id),
mx_uint(len(ctx_map_keys)),
c_str_array(ctx_map_keys),
c_array_buf(ctypes.c_int,
py_array('i', ctx_map_dev_types)),
c_array_buf(ctypes.c_int,
py_array('i', ctx_map_dev_ids)),
mx_uint(len(provided_arg_shape_names)),
c_str_array(provided_arg_shape_names),
c_array_buf(mx_int,
py_array('i', provided_arg_shape_data)),
c_array_buf(mx_uint,
py_array('I', provided_arg_shape_idx)),
ctypes.byref(num_in_args),
ctypes.byref(in_arg_handles),
ctypes.byref(arg_grad_handles),
ctypes.byref(num_aux_states),
ctypes.byref(aux_state_handles),
shared_handle,
ctypes.byref(handle)))
arg_arrays = [_ndarray_cls(NDArrayHandle(in_arg_handles[i]))
for i in range(num_in_args.value)]
grad_arrays = [_ndarray_cls(NDArrayHandle(arg_grad_handles[i]))
if arg_grad_handles[i] is not None
else None for i in range(num_in_args.value)]
aux_arrays = [_ndarray_cls(NDArrayHandle(aux_state_handles[i]))
for i in range(num_aux_states.value)]
executor = Executor(handle, self._symbol, self._ctx, self._grad_req, self._group2ctx)
executor.arg_arrays = arg_arrays
executor.grad_arrays = grad_arrays
executor.aux_arrays = aux_arrays
return executor | def reshape(self, partial_shaping=False, allow_up_sizing=False, **kwargs):
"""Return a new executor with the same symbol and shared memory,
but different input/output shapes.
For runtime reshaping, variable length sequences, etc.
The returned executor shares state with the current one,
and cannot be used in parallel with it.
Parameters
----------
partial_shaping : bool
Whether to allow changing the shape of unspecified arguments.
allow_up_sizing : bool
Whether to allow allocating new ndarrays that's larger than the original.
kwargs : dict of string to tuple of int
New shape for arguments.
Returns
-------
exec : Executor
A new executor that shares memory with self.
Examples
--------
>>> a = mx.sym.Variable('a')
>>> b = mx.sym.Variable('b')
>>> c = 2 * a + b
>>> texec = c.bind(mx.cpu(), {'a': mx.nd.zeros((2, 1)), 'b': mx.nd.ones((2,1))})
>>> new_shape = {'a': (4, 2), 'b': (4, 2)}
>>> texec.reshape(allow_up_sizing=True, **new_shape)
"""
# pylint: disable=too-many-branches
provided_arg_shape_data = [] # shape data
# argument shape index in sdata,
# e.g. [sdata[indptr[0]], sdata[indptr[1]]) is the shape of the first arg
provided_arg_shape_idx = [0]
provided_arg_shape_names = [] # provided argument names
for k, v in kwargs.items():
if isinstance(v, tuple):
provided_arg_shape_names.append(k)
provided_arg_shape_data.extend(v)
provided_arg_shape_idx.append(len(provided_arg_shape_data))
ctx_map_keys = []
ctx_map_dev_types = []
ctx_map_dev_ids = []
if self._group2ctx:
for key, val in self._group2ctx.items():
ctx_map_keys.append(key)
ctx_map_dev_types.append(val.device_typeid)
ctx_map_dev_ids.append(val.device_id)
handle = ExecutorHandle()
shared_handle = self.handle
num_in_args = ctypes.c_uint()
in_arg_handles = ctypes.POINTER(NDArrayHandle)()
arg_grad_handles = ctypes.POINTER(NDArrayHandle)()
num_aux_states = ctypes.c_uint()
aux_state_handles = ctypes.POINTER(NDArrayHandle)()
check_call(_LIB.MXExecutorReshapeEx(ctypes.c_int(int(partial_shaping)),
ctypes.c_int(int(allow_up_sizing)),
ctypes.c_int(self._ctx.device_typeid),
ctypes.c_int(self._ctx.device_id),
mx_uint(len(ctx_map_keys)),
c_str_array(ctx_map_keys),
c_array_buf(ctypes.c_int,
py_array('i', ctx_map_dev_types)),
c_array_buf(ctypes.c_int,
py_array('i', ctx_map_dev_ids)),
mx_uint(len(provided_arg_shape_names)),
c_str_array(provided_arg_shape_names),
c_array_buf(mx_int,
py_array('i', provided_arg_shape_data)),
c_array_buf(mx_uint,
py_array('I', provided_arg_shape_idx)),
ctypes.byref(num_in_args),
ctypes.byref(in_arg_handles),
ctypes.byref(arg_grad_handles),
ctypes.byref(num_aux_states),
ctypes.byref(aux_state_handles),
shared_handle,
ctypes.byref(handle)))
arg_arrays = [_ndarray_cls(NDArrayHandle(in_arg_handles[i]))
for i in range(num_in_args.value)]
grad_arrays = [_ndarray_cls(NDArrayHandle(arg_grad_handles[i]))
if arg_grad_handles[i] is not None
else None for i in range(num_in_args.value)]
aux_arrays = [_ndarray_cls(NDArrayHandle(aux_state_handles[i]))
for i in range(num_aux_states.value)]
executor = Executor(handle, self._symbol, self._ctx, self._grad_req, self._group2ctx)
executor.arg_arrays = arg_arrays
executor.grad_arrays = grad_arrays
executor.aux_arrays = aux_arrays
return executor | [
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train | Executor.debug_str | Get a debug string about internal execution plan.
Returns
-------
debug_str : string
Debug string of the executor.
Examples
--------
>>> a = mx.sym.Variable('a')
>>> b = mx.sym.sin(a)
>>> c = 2 * a + b
>>> texec = c.bind(mx.cpu(), {'a': mx.nd.array([1,2]), 'b':mx.nd.array([2,3])})
>>> print(texec.debug_str())
Symbol Outputs:
output[0]=_plus0(0)
Variable:a
--------------------
Op:_mul_scalar, Name=_mulscalar0
Inputs:
arg[0]=a(0) version=0
Attrs:
scalar=2
--------------------
Op:sin, Name=sin0
Inputs:
arg[0]=a(0) version=0
--------------------
Op:elemwise_add, Name=_plus0
Inputs:
arg[0]=_mulscalar0(0)
arg[1]=sin0(0)
Total 0 MB allocated
Total 11 TempSpace resource requested | python/mxnet/executor.py | def debug_str(self):
"""Get a debug string about internal execution plan.
Returns
-------
debug_str : string
Debug string of the executor.
Examples
--------
>>> a = mx.sym.Variable('a')
>>> b = mx.sym.sin(a)
>>> c = 2 * a + b
>>> texec = c.bind(mx.cpu(), {'a': mx.nd.array([1,2]), 'b':mx.nd.array([2,3])})
>>> print(texec.debug_str())
Symbol Outputs:
output[0]=_plus0(0)
Variable:a
--------------------
Op:_mul_scalar, Name=_mulscalar0
Inputs:
arg[0]=a(0) version=0
Attrs:
scalar=2
--------------------
Op:sin, Name=sin0
Inputs:
arg[0]=a(0) version=0
--------------------
Op:elemwise_add, Name=_plus0
Inputs:
arg[0]=_mulscalar0(0)
arg[1]=sin0(0)
Total 0 MB allocated
Total 11 TempSpace resource requested
"""
debug_str = ctypes.c_char_p()
check_call(_LIB.MXExecutorPrint(
self.handle, ctypes.byref(debug_str)))
return py_str(debug_str.value) | def debug_str(self):
"""Get a debug string about internal execution plan.
Returns
-------
debug_str : string
Debug string of the executor.
Examples
--------
>>> a = mx.sym.Variable('a')
>>> b = mx.sym.sin(a)
>>> c = 2 * a + b
>>> texec = c.bind(mx.cpu(), {'a': mx.nd.array([1,2]), 'b':mx.nd.array([2,3])})
>>> print(texec.debug_str())
Symbol Outputs:
output[0]=_plus0(0)
Variable:a
--------------------
Op:_mul_scalar, Name=_mulscalar0
Inputs:
arg[0]=a(0) version=0
Attrs:
scalar=2
--------------------
Op:sin, Name=sin0
Inputs:
arg[0]=a(0) version=0
--------------------
Op:elemwise_add, Name=_plus0
Inputs:
arg[0]=_mulscalar0(0)
arg[1]=sin0(0)
Total 0 MB allocated
Total 11 TempSpace resource requested
"""
debug_str = ctypes.c_char_p()
check_call(_LIB.MXExecutorPrint(
self.handle, ctypes.byref(debug_str)))
return py_str(debug_str.value) | [
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train | parse_voc_rec | parse pascal voc record into a dictionary
:param filename: xml file path
:return: list of dict | example/ssd/evaluate/eval_voc.py | def parse_voc_rec(filename):
"""
parse pascal voc record into a dictionary
:param filename: xml file path
:return: list of dict
"""
import xml.etree.ElementTree as ET
tree = ET.parse(filename)
objects = []
for obj in tree.findall('object'):
obj_dict = dict()
obj_dict['name'] = obj.find('name').text
obj_dict['difficult'] = int(obj.find('difficult').text)
bbox = obj.find('bndbox')
obj_dict['bbox'] = [int(bbox.find('xmin').text),
int(bbox.find('ymin').text),
int(bbox.find('xmax').text),
int(bbox.find('ymax').text)]
objects.append(obj_dict)
return objects | def parse_voc_rec(filename):
"""
parse pascal voc record into a dictionary
:param filename: xml file path
:return: list of dict
"""
import xml.etree.ElementTree as ET
tree = ET.parse(filename)
objects = []
for obj in tree.findall('object'):
obj_dict = dict()
obj_dict['name'] = obj.find('name').text
obj_dict['difficult'] = int(obj.find('difficult').text)
bbox = obj.find('bndbox')
obj_dict['bbox'] = [int(bbox.find('xmin').text),
int(bbox.find('ymin').text),
int(bbox.find('xmax').text),
int(bbox.find('ymax').text)]
objects.append(obj_dict)
return objects | [
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train | voc_eval | pascal voc evaluation
:param detpath: detection results detpath.format(classname)
:param annopath: annotations annopath.format(classname)
:param imageset_file: text file containing list of images
:param classname: category name
:param cache_dir: caching annotations
:param ovthresh: overlap threshold
:param use_07_metric: whether to use voc07's 11 point ap computation
:return: rec, prec, ap | example/ssd/evaluate/eval_voc.py | def voc_eval(detpath, annopath, imageset_file, classname, cache_dir, ovthresh=0.5, use_07_metric=False):
"""
pascal voc evaluation
:param detpath: detection results detpath.format(classname)
:param annopath: annotations annopath.format(classname)
:param imageset_file: text file containing list of images
:param classname: category name
:param cache_dir: caching annotations
:param ovthresh: overlap threshold
:param use_07_metric: whether to use voc07's 11 point ap computation
:return: rec, prec, ap
"""
if not os.path.isdir(cache_dir):
os.mkdir(cache_dir)
cache_file = os.path.join(cache_dir, 'annotations.pkl')
with open(imageset_file, 'r') as f:
lines = f.readlines()
image_filenames = [x.strip() for x in lines]
# load annotations from cache
if not os.path.isfile(cache_file):
recs = {}
for ind, image_filename in enumerate(image_filenames):
recs[image_filename] = parse_voc_rec(annopath.format(image_filename))
if ind % 100 == 0:
print('reading annotations for {:d}/{:d}'.format(ind + 1, len(image_filenames)))
print('saving annotations cache to {:s}'.format(cache_file))
with open(cache_file, 'wb') as f:
pickle.dump(recs, f)
else:
with open(cache_file, 'rb') as f:
recs = pickle.load(f)
# extract objects in :param classname:
class_recs = {}
npos = 0
for image_filename in image_filenames:
objects = [obj for obj in recs[image_filename] if obj['name'] == classname]
bbox = np.array([x['bbox'] for x in objects])
difficult = np.array([x['difficult'] for x in objects]).astype(np.bool)
det = [False] * len(objects) # stand for detected
npos = npos + sum(~difficult)
class_recs[image_filename] = {'bbox': bbox,
'difficult': difficult,
'det': det}
# read detections
detfile = detpath.format(classname)
with open(detfile, 'r') as f:
lines = f.readlines()
splitlines = [x.strip().split(' ') for x in lines]
image_ids = [x[0] for x in splitlines]
confidence = np.array([float(x[1]) for x in splitlines])
bbox = np.array([[float(z) for z in x[2:]] for x in splitlines])
# sort by confidence
sorted_inds = np.argsort(-confidence)
sorted_scores = np.sort(-confidence)
bbox = bbox[sorted_inds, :]
image_ids = [image_ids[x] for x in sorted_inds]
# go down detections and mark true positives and false positives
nd = len(image_ids)
tp = np.zeros(nd)
fp = np.zeros(nd)
for d in range(nd):
r = class_recs[image_ids[d]]
bb = bbox[d, :].astype(float)
ovmax = -np.inf
bbgt = r['bbox'].astype(float)
if bbgt.size > 0:
# compute overlaps
# intersection
ixmin = np.maximum(bbgt[:, 0], bb[0])
iymin = np.maximum(bbgt[:, 1], bb[1])
ixmax = np.minimum(bbgt[:, 2], bb[2])
iymax = np.minimum(bbgt[:, 3], bb[3])
iw = np.maximum(ixmax - ixmin + 1., 0.)
ih = np.maximum(iymax - iymin + 1., 0.)
inters = iw * ih
# union
uni = ((bb[2] - bb[0] + 1.) * (bb[3] - bb[1] + 1.) +
(bbgt[:, 2] - bbgt[:, 0] + 1.) *
(bbgt[:, 3] - bbgt[:, 1] + 1.) - inters)
overlaps = inters / uni
ovmax = np.max(overlaps)
jmax = np.argmax(overlaps)
if ovmax > ovthresh:
if not r['difficult'][jmax]:
if not r['det'][jmax]:
tp[d] = 1.
r['det'][jmax] = 1
else:
fp[d] = 1.
else:
fp[d] = 1.
# compute precision recall
fp = np.cumsum(fp)
tp = np.cumsum(tp)
rec = tp / float(npos)
# avoid division by zero in case first detection matches a difficult ground ruth
prec = tp / np.maximum(tp + fp, np.finfo(np.float64).eps)
ap = voc_ap(rec, prec, use_07_metric)
return rec, prec, ap | def voc_eval(detpath, annopath, imageset_file, classname, cache_dir, ovthresh=0.5, use_07_metric=False):
"""
pascal voc evaluation
:param detpath: detection results detpath.format(classname)
:param annopath: annotations annopath.format(classname)
:param imageset_file: text file containing list of images
:param classname: category name
:param cache_dir: caching annotations
:param ovthresh: overlap threshold
:param use_07_metric: whether to use voc07's 11 point ap computation
:return: rec, prec, ap
"""
if not os.path.isdir(cache_dir):
os.mkdir(cache_dir)
cache_file = os.path.join(cache_dir, 'annotations.pkl')
with open(imageset_file, 'r') as f:
lines = f.readlines()
image_filenames = [x.strip() for x in lines]
# load annotations from cache
if not os.path.isfile(cache_file):
recs = {}
for ind, image_filename in enumerate(image_filenames):
recs[image_filename] = parse_voc_rec(annopath.format(image_filename))
if ind % 100 == 0:
print('reading annotations for {:d}/{:d}'.format(ind + 1, len(image_filenames)))
print('saving annotations cache to {:s}'.format(cache_file))
with open(cache_file, 'wb') as f:
pickle.dump(recs, f)
else:
with open(cache_file, 'rb') as f:
recs = pickle.load(f)
# extract objects in :param classname:
class_recs = {}
npos = 0
for image_filename in image_filenames:
objects = [obj for obj in recs[image_filename] if obj['name'] == classname]
bbox = np.array([x['bbox'] for x in objects])
difficult = np.array([x['difficult'] for x in objects]).astype(np.bool)
det = [False] * len(objects) # stand for detected
npos = npos + sum(~difficult)
class_recs[image_filename] = {'bbox': bbox,
'difficult': difficult,
'det': det}
# read detections
detfile = detpath.format(classname)
with open(detfile, 'r') as f:
lines = f.readlines()
splitlines = [x.strip().split(' ') for x in lines]
image_ids = [x[0] for x in splitlines]
confidence = np.array([float(x[1]) for x in splitlines])
bbox = np.array([[float(z) for z in x[2:]] for x in splitlines])
# sort by confidence
sorted_inds = np.argsort(-confidence)
sorted_scores = np.sort(-confidence)
bbox = bbox[sorted_inds, :]
image_ids = [image_ids[x] for x in sorted_inds]
# go down detections and mark true positives and false positives
nd = len(image_ids)
tp = np.zeros(nd)
fp = np.zeros(nd)
for d in range(nd):
r = class_recs[image_ids[d]]
bb = bbox[d, :].astype(float)
ovmax = -np.inf
bbgt = r['bbox'].astype(float)
if bbgt.size > 0:
# compute overlaps
# intersection
ixmin = np.maximum(bbgt[:, 0], bb[0])
iymin = np.maximum(bbgt[:, 1], bb[1])
ixmax = np.minimum(bbgt[:, 2], bb[2])
iymax = np.minimum(bbgt[:, 3], bb[3])
iw = np.maximum(ixmax - ixmin + 1., 0.)
ih = np.maximum(iymax - iymin + 1., 0.)
inters = iw * ih
# union
uni = ((bb[2] - bb[0] + 1.) * (bb[3] - bb[1] + 1.) +
(bbgt[:, 2] - bbgt[:, 0] + 1.) *
(bbgt[:, 3] - bbgt[:, 1] + 1.) - inters)
overlaps = inters / uni
ovmax = np.max(overlaps)
jmax = np.argmax(overlaps)
if ovmax > ovthresh:
if not r['difficult'][jmax]:
if not r['det'][jmax]:
tp[d] = 1.
r['det'][jmax] = 1
else:
fp[d] = 1.
else:
fp[d] = 1.
# compute precision recall
fp = np.cumsum(fp)
tp = np.cumsum(tp)
rec = tp / float(npos)
# avoid division by zero in case first detection matches a difficult ground ruth
prec = tp / np.maximum(tp + fp, np.finfo(np.float64).eps)
ap = voc_ap(rec, prec, use_07_metric)
return rec, prec, ap | [
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train | MXNetGraph.register | Register operators | python/mxnet/contrib/onnx/mx2onnx/export_onnx.py | def register(op_name):
"""Register operators"""
def wrapper(func):
"""Helper function to map functions"""
try:
import onnx as _
MXNetGraph.registry_[op_name] = func
except ImportError:
pass
return func
return wrapper | def register(op_name):
"""Register operators"""
def wrapper(func):
"""Helper function to map functions"""
try:
import onnx as _
MXNetGraph.registry_[op_name] = func
except ImportError:
pass
return func
return wrapper | [
"Register",
"operators"
] | apache/incubator-mxnet | python | https://github.com/apache/incubator-mxnet/blob/1af29e9c060a4c7d60eeaacba32afdb9a7775ba7/python/mxnet/contrib/onnx/mx2onnx/export_onnx.py#L72-L83 | [
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train | MXNetGraph.convert_layer | Convert MXNet layer to ONNX | python/mxnet/contrib/onnx/mx2onnx/export_onnx.py | def convert_layer(node, **kwargs):
"""Convert MXNet layer to ONNX"""
op = str(node["op"])
if op not in MXNetGraph.registry_:
raise AttributeError("No conversion function registered for op type %s yet." % op)
convert_func = MXNetGraph.registry_[op]
return convert_func(node, **kwargs) | def convert_layer(node, **kwargs):
"""Convert MXNet layer to ONNX"""
op = str(node["op"])
if op not in MXNetGraph.registry_:
raise AttributeError("No conversion function registered for op type %s yet." % op)
convert_func = MXNetGraph.registry_[op]
return convert_func(node, **kwargs) | [
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train | MXNetGraph.split_params | Helper function to split params dictionary into args and aux params
Parameters
----------
sym : :class:`~mxnet.symbol.Symbol`
MXNet symbol object
params : dict of ``str`` to :class:`~mxnet.ndarray.NDArray`
Dict of converted parameters stored in ``mxnet.ndarray.NDArray`` format
Returns
-------
arg_params : dict of ``str`` to :class:`~mxnet.ndarray.NDArray`
Dict of converted parameters stored in ``mxnet.ndarray.NDArray`` format
aux_params : dict of ``str`` to :class:`~mxnet.ndarray.NDArray`
Dict of converted parameters stored in ``mxnet.ndarray.NDArray`` format | python/mxnet/contrib/onnx/mx2onnx/export_onnx.py | def split_params(sym, params):
"""Helper function to split params dictionary into args and aux params
Parameters
----------
sym : :class:`~mxnet.symbol.Symbol`
MXNet symbol object
params : dict of ``str`` to :class:`~mxnet.ndarray.NDArray`
Dict of converted parameters stored in ``mxnet.ndarray.NDArray`` format
Returns
-------
arg_params : dict of ``str`` to :class:`~mxnet.ndarray.NDArray`
Dict of converted parameters stored in ``mxnet.ndarray.NDArray`` format
aux_params : dict of ``str`` to :class:`~mxnet.ndarray.NDArray`
Dict of converted parameters stored in ``mxnet.ndarray.NDArray`` format
"""
arg_params = {}
aux_params = {}
for args in sym.list_arguments():
if args in params:
arg_params.update({args: nd.array(params[args])})
for aux in sym.list_auxiliary_states():
if aux in params:
aux_params.update({aux: nd.array(params[aux])})
return arg_params, aux_params | def split_params(sym, params):
"""Helper function to split params dictionary into args and aux params
Parameters
----------
sym : :class:`~mxnet.symbol.Symbol`
MXNet symbol object
params : dict of ``str`` to :class:`~mxnet.ndarray.NDArray`
Dict of converted parameters stored in ``mxnet.ndarray.NDArray`` format
Returns
-------
arg_params : dict of ``str`` to :class:`~mxnet.ndarray.NDArray`
Dict of converted parameters stored in ``mxnet.ndarray.NDArray`` format
aux_params : dict of ``str`` to :class:`~mxnet.ndarray.NDArray`
Dict of converted parameters stored in ``mxnet.ndarray.NDArray`` format
"""
arg_params = {}
aux_params = {}
for args in sym.list_arguments():
if args in params:
arg_params.update({args: nd.array(params[args])})
for aux in sym.list_auxiliary_states():
if aux in params:
aux_params.update({aux: nd.array(params[aux])})
return arg_params, aux_params | [
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train | MXNetGraph.get_outputs | Infer output shapes and return dictionary of output name to shape
:param :class:`~mxnet.symbol.Symbol` sym: symbol to perform infer shape on
:param dic of (str, nd.NDArray) params:
:param list of tuple(int, ...) in_shape: list of all input shapes
:param in_label: name of label typically used in loss that may be left in graph. This name is
removed from list of inputs required by symbol
:return: dictionary of output name to shape
:rtype: dict of (str, tuple(int, ...)) | python/mxnet/contrib/onnx/mx2onnx/export_onnx.py | def get_outputs(sym, params, in_shape, in_label):
""" Infer output shapes and return dictionary of output name to shape
:param :class:`~mxnet.symbol.Symbol` sym: symbol to perform infer shape on
:param dic of (str, nd.NDArray) params:
:param list of tuple(int, ...) in_shape: list of all input shapes
:param in_label: name of label typically used in loss that may be left in graph. This name is
removed from list of inputs required by symbol
:return: dictionary of output name to shape
:rtype: dict of (str, tuple(int, ...))
"""
# remove any input listed in params from sym.list_inputs() and bind them to the input shapes provided
# by user. Also remove in_label, which is the name of the label symbol that may have been used
# as the label for loss during training.
inputs = {n: tuple(s) for n, s in zip([n for n in sym.list_inputs() if n not in params and n != in_label],
in_shape)}
# Add params and their shape to list of inputs
inputs.update({n: v.shape for n, v in params.items() if n in sym.list_inputs()})
# Provide input data as well as input params to infer_shape()
_, out_shapes, _ = sym.infer_shape(**inputs)
out_names = list()
for name in sym.list_outputs():
if name.endswith('_output'):
out_names.append(name[:-len('_output')])
else:
logging.info("output '%s' does not end with '_output'", name)
out_names.append(name)
assert len(out_shapes) == len(out_names)
# bind output shapes with output names
graph_outputs = {n: s for n, s in zip(out_names, out_shapes)}
return graph_outputs | def get_outputs(sym, params, in_shape, in_label):
""" Infer output shapes and return dictionary of output name to shape
:param :class:`~mxnet.symbol.Symbol` sym: symbol to perform infer shape on
:param dic of (str, nd.NDArray) params:
:param list of tuple(int, ...) in_shape: list of all input shapes
:param in_label: name of label typically used in loss that may be left in graph. This name is
removed from list of inputs required by symbol
:return: dictionary of output name to shape
:rtype: dict of (str, tuple(int, ...))
"""
# remove any input listed in params from sym.list_inputs() and bind them to the input shapes provided
# by user. Also remove in_label, which is the name of the label symbol that may have been used
# as the label for loss during training.
inputs = {n: tuple(s) for n, s in zip([n for n in sym.list_inputs() if n not in params and n != in_label],
in_shape)}
# Add params and their shape to list of inputs
inputs.update({n: v.shape for n, v in params.items() if n in sym.list_inputs()})
# Provide input data as well as input params to infer_shape()
_, out_shapes, _ = sym.infer_shape(**inputs)
out_names = list()
for name in sym.list_outputs():
if name.endswith('_output'):
out_names.append(name[:-len('_output')])
else:
logging.info("output '%s' does not end with '_output'", name)
out_names.append(name)
assert len(out_shapes) == len(out_names)
# bind output shapes with output names
graph_outputs = {n: s for n, s in zip(out_names, out_shapes)}
return graph_outputs | [
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train | MXNetGraph.convert_weights_to_numpy | Convert weights to numpy | python/mxnet/contrib/onnx/mx2onnx/export_onnx.py | def convert_weights_to_numpy(weights_dict):
"""Convert weights to numpy"""
return dict([(k.replace("arg:", "").replace("aux:", ""), v.asnumpy())
for k, v in weights_dict.items()]) | def convert_weights_to_numpy(weights_dict):
"""Convert weights to numpy"""
return dict([(k.replace("arg:", "").replace("aux:", ""), v.asnumpy())
for k, v in weights_dict.items()]) | [
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train | MXNetGraph.create_onnx_graph_proto | Convert MXNet graph to ONNX graph
Parameters
----------
sym : :class:`~mxnet.symbol.Symbol`
MXNet symbol object
params : dict of ``str`` to :class:`~mxnet.ndarray.NDArray`
Dict of converted parameters stored in ``mxnet.ndarray.NDArray`` format
in_shape : List of tuple
Input shape of the model e.g [(1,3,224,224)]
in_type : data type
Input data type e.g. np.float32
verbose : Boolean
If true will print logs of the model conversion
Returns
-------
graph : GraphProto
ONNX graph | python/mxnet/contrib/onnx/mx2onnx/export_onnx.py | def create_onnx_graph_proto(self, sym, params, in_shape, in_type, verbose=False):
"""Convert MXNet graph to ONNX graph
Parameters
----------
sym : :class:`~mxnet.symbol.Symbol`
MXNet symbol object
params : dict of ``str`` to :class:`~mxnet.ndarray.NDArray`
Dict of converted parameters stored in ``mxnet.ndarray.NDArray`` format
in_shape : List of tuple
Input shape of the model e.g [(1,3,224,224)]
in_type : data type
Input data type e.g. np.float32
verbose : Boolean
If true will print logs of the model conversion
Returns
-------
graph : GraphProto
ONNX graph
"""
try:
from onnx import (checker, helper, NodeProto, ValueInfoProto, TensorProto)
from onnx.helper import make_tensor_value_info
except ImportError:
raise ImportError("Onnx and protobuf need to be installed. "
+ "Instructions to install - https://github.com/onnx/onnx")
# When MXNet model is saved to json file , MXNet adds a node for label.
# The name of this node is, name of the last node + "_label" ( i.e if last node
# name is "Softmax", this node will have a name "Softmax_label". Also, the new node
# will always be second last node in the json graph.
# Deriving the output_label name.
output_label = sym.get_internals()[len(sym.get_internals()) - 1].name + "_label"
weights = MXNetGraph.convert_weights_to_numpy(params)
mx_graph = json.loads(sym.tojson())["nodes"]
initializer = []
all_processed_nodes = []
onnx_processed_nodes = []
onnx_processed_inputs = []
onnx_processed_outputs = []
index_lookup = []
# Determine output shape
graph_outputs = MXNetGraph.get_outputs(sym, params, in_shape, output_label)
graph_input_idx = 0
for idx, node in enumerate(mx_graph):
op = node["op"]
name = node["name"]
if verbose:
logging.info("Converting idx: %d, op: %s, name: %s", idx, op, name)
# A node is an input node if its op_name is "null" and is not
# in params dict
if op == "null" and name not in params:
# Handling graph input
# Skipping output_label node, as this node is not part of graph
# Refer "output_label" assignment above for more details.
if name == output_label:
continue
converted = MXNetGraph.convert_layer(
node,
is_input=True,
mx_graph=mx_graph,
weights=weights,
in_shape=in_shape[graph_input_idx],
in_type=in_type,
proc_nodes=all_processed_nodes,
initializer=initializer,
index_lookup=index_lookup)
graph_input_idx += 1
else:
# Handling graph layers
converted = MXNetGraph.convert_layer(
node,
is_input=False,
mx_graph=mx_graph,
weights=weights,
in_shape=in_shape,
in_type=in_type,
proc_nodes=all_processed_nodes,
initializer=initializer,
index_lookup=index_lookup,
idx=idx
)
if isinstance(converted, list):
# Iterate for all converted nodes
for converted_node in converted:
# If converted node is ValueInfoProto, add it in inputs
if isinstance(converted_node, ValueInfoProto):
onnx_processed_inputs.append(converted_node)
# If converted node is NodeProto, add it in processed nodes list
elif isinstance(converted_node, NodeProto):
onnx_processed_nodes.append(converted_node)
# some operators have multiple outputs,
# therefore, check all output node names
node_names = list(converted_node.output)
for nodename in node_names:
if nodename in graph_outputs:
onnx_processed_outputs.append(
make_tensor_value_info(
name=nodename,
elem_type=in_type,
shape=graph_outputs[nodename]
)
)
if verbose:
logging.info("Output node is: %s", nodename)
elif isinstance(converted_node, TensorProto):
raise ValueError("Did not expect TensorProto")
else:
raise ValueError("node is of an unrecognized type: %s" % type(node))
all_processed_nodes.append(converted_node)
if idx > 0:
# Handling extra node added to the graph if the MXNet model was
# saved to json file,
# refer "output_label" initialization above for more details.
# if extra node was added then prev_index to the last node is adjusted.
if idx == (len(mx_graph) - 1) and \
mx_graph[len(mx_graph)-2]["name"] == output_label:
prev_index = index_lookup[idx - 2]
else:
prev_index = index_lookup[idx - 1]
index_lookup.append(prev_index+len(converted))
else:
index_lookup.append(len(converted) - 1)
else:
logging.info("Operator converter function should always return a list")
graph = helper.make_graph(
onnx_processed_nodes,
"mxnet_converted_model",
onnx_processed_inputs,
onnx_processed_outputs
)
graph.initializer.extend(initializer)
checker.check_graph(graph)
return graph | def create_onnx_graph_proto(self, sym, params, in_shape, in_type, verbose=False):
"""Convert MXNet graph to ONNX graph
Parameters
----------
sym : :class:`~mxnet.symbol.Symbol`
MXNet symbol object
params : dict of ``str`` to :class:`~mxnet.ndarray.NDArray`
Dict of converted parameters stored in ``mxnet.ndarray.NDArray`` format
in_shape : List of tuple
Input shape of the model e.g [(1,3,224,224)]
in_type : data type
Input data type e.g. np.float32
verbose : Boolean
If true will print logs of the model conversion
Returns
-------
graph : GraphProto
ONNX graph
"""
try:
from onnx import (checker, helper, NodeProto, ValueInfoProto, TensorProto)
from onnx.helper import make_tensor_value_info
except ImportError:
raise ImportError("Onnx and protobuf need to be installed. "
+ "Instructions to install - https://github.com/onnx/onnx")
# When MXNet model is saved to json file , MXNet adds a node for label.
# The name of this node is, name of the last node + "_label" ( i.e if last node
# name is "Softmax", this node will have a name "Softmax_label". Also, the new node
# will always be second last node in the json graph.
# Deriving the output_label name.
output_label = sym.get_internals()[len(sym.get_internals()) - 1].name + "_label"
weights = MXNetGraph.convert_weights_to_numpy(params)
mx_graph = json.loads(sym.tojson())["nodes"]
initializer = []
all_processed_nodes = []
onnx_processed_nodes = []
onnx_processed_inputs = []
onnx_processed_outputs = []
index_lookup = []
# Determine output shape
graph_outputs = MXNetGraph.get_outputs(sym, params, in_shape, output_label)
graph_input_idx = 0
for idx, node in enumerate(mx_graph):
op = node["op"]
name = node["name"]
if verbose:
logging.info("Converting idx: %d, op: %s, name: %s", idx, op, name)
# A node is an input node if its op_name is "null" and is not
# in params dict
if op == "null" and name not in params:
# Handling graph input
# Skipping output_label node, as this node is not part of graph
# Refer "output_label" assignment above for more details.
if name == output_label:
continue
converted = MXNetGraph.convert_layer(
node,
is_input=True,
mx_graph=mx_graph,
weights=weights,
in_shape=in_shape[graph_input_idx],
in_type=in_type,
proc_nodes=all_processed_nodes,
initializer=initializer,
index_lookup=index_lookup)
graph_input_idx += 1
else:
# Handling graph layers
converted = MXNetGraph.convert_layer(
node,
is_input=False,
mx_graph=mx_graph,
weights=weights,
in_shape=in_shape,
in_type=in_type,
proc_nodes=all_processed_nodes,
initializer=initializer,
index_lookup=index_lookup,
idx=idx
)
if isinstance(converted, list):
# Iterate for all converted nodes
for converted_node in converted:
# If converted node is ValueInfoProto, add it in inputs
if isinstance(converted_node, ValueInfoProto):
onnx_processed_inputs.append(converted_node)
# If converted node is NodeProto, add it in processed nodes list
elif isinstance(converted_node, NodeProto):
onnx_processed_nodes.append(converted_node)
# some operators have multiple outputs,
# therefore, check all output node names
node_names = list(converted_node.output)
for nodename in node_names:
if nodename in graph_outputs:
onnx_processed_outputs.append(
make_tensor_value_info(
name=nodename,
elem_type=in_type,
shape=graph_outputs[nodename]
)
)
if verbose:
logging.info("Output node is: %s", nodename)
elif isinstance(converted_node, TensorProto):
raise ValueError("Did not expect TensorProto")
else:
raise ValueError("node is of an unrecognized type: %s" % type(node))
all_processed_nodes.append(converted_node)
if idx > 0:
# Handling extra node added to the graph if the MXNet model was
# saved to json file,
# refer "output_label" initialization above for more details.
# if extra node was added then prev_index to the last node is adjusted.
if idx == (len(mx_graph) - 1) and \
mx_graph[len(mx_graph)-2]["name"] == output_label:
prev_index = index_lookup[idx - 2]
else:
prev_index = index_lookup[idx - 1]
index_lookup.append(prev_index+len(converted))
else:
index_lookup.append(len(converted) - 1)
else:
logging.info("Operator converter function should always return a list")
graph = helper.make_graph(
onnx_processed_nodes,
"mxnet_converted_model",
onnx_processed_inputs,
onnx_processed_outputs
)
graph.initializer.extend(initializer)
checker.check_graph(graph)
return graph | [
"Convert",
"MXNet",
"graph",
"to",
"ONNX",
"graph"
] | apache/incubator-mxnet | python | https://github.com/apache/incubator-mxnet/blob/1af29e9c060a4c7d60eeaacba32afdb9a7775ba7/python/mxnet/contrib/onnx/mx2onnx/export_onnx.py#L164-L313 | [
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"ValueInfoProto",... | 1af29e9c060a4c7d60eeaacba32afdb9a7775ba7 |
train | get_lr_scheduler | Compute learning rate and refactor scheduler
Parameters:
---------
learning_rate : float
original learning rate
lr_refactor_step : comma separated str
epochs to change learning rate
lr_refactor_ratio : float
lr *= ratio at certain steps
num_example : int
number of training images, used to estimate the iterations given epochs
batch_size : int
training batch size
begin_epoch : int
starting epoch
Returns:
---------
(learning_rate, mx.lr_scheduler) as tuple | example/ssd/train/train_net.py | def get_lr_scheduler(learning_rate, lr_refactor_step, lr_refactor_ratio,
num_example, batch_size, begin_epoch):
"""
Compute learning rate and refactor scheduler
Parameters:
---------
learning_rate : float
original learning rate
lr_refactor_step : comma separated str
epochs to change learning rate
lr_refactor_ratio : float
lr *= ratio at certain steps
num_example : int
number of training images, used to estimate the iterations given epochs
batch_size : int
training batch size
begin_epoch : int
starting epoch
Returns:
---------
(learning_rate, mx.lr_scheduler) as tuple
"""
assert lr_refactor_ratio > 0
iter_refactor = [int(r) for r in lr_refactor_step.split(',') if r.strip()]
if lr_refactor_ratio >= 1:
return (learning_rate, None)
else:
lr = learning_rate
epoch_size = num_example // batch_size
for s in iter_refactor:
if begin_epoch >= s:
lr *= lr_refactor_ratio
if lr != learning_rate:
logging.getLogger().info("Adjusted learning rate to {} for epoch {}".format(lr, begin_epoch))
steps = [epoch_size * (x - begin_epoch) for x in iter_refactor if x > begin_epoch]
if not steps:
return (lr, None)
lr_scheduler = mx.lr_scheduler.MultiFactorScheduler(step=steps, factor=lr_refactor_ratio)
return (lr, lr_scheduler) | def get_lr_scheduler(learning_rate, lr_refactor_step, lr_refactor_ratio,
num_example, batch_size, begin_epoch):
"""
Compute learning rate and refactor scheduler
Parameters:
---------
learning_rate : float
original learning rate
lr_refactor_step : comma separated str
epochs to change learning rate
lr_refactor_ratio : float
lr *= ratio at certain steps
num_example : int
number of training images, used to estimate the iterations given epochs
batch_size : int
training batch size
begin_epoch : int
starting epoch
Returns:
---------
(learning_rate, mx.lr_scheduler) as tuple
"""
assert lr_refactor_ratio > 0
iter_refactor = [int(r) for r in lr_refactor_step.split(',') if r.strip()]
if lr_refactor_ratio >= 1:
return (learning_rate, None)
else:
lr = learning_rate
epoch_size = num_example // batch_size
for s in iter_refactor:
if begin_epoch >= s:
lr *= lr_refactor_ratio
if lr != learning_rate:
logging.getLogger().info("Adjusted learning rate to {} for epoch {}".format(lr, begin_epoch))
steps = [epoch_size * (x - begin_epoch) for x in iter_refactor if x > begin_epoch]
if not steps:
return (lr, None)
lr_scheduler = mx.lr_scheduler.MultiFactorScheduler(step=steps, factor=lr_refactor_ratio)
return (lr, lr_scheduler) | [
"Compute",
"learning",
"rate",
"and",
"refactor",
"scheduler"
] | apache/incubator-mxnet | python | https://github.com/apache/incubator-mxnet/blob/1af29e9c060a4c7d60eeaacba32afdb9a7775ba7/example/ssd/train/train_net.py#L48-L88 | [
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"fo... | 1af29e9c060a4c7d60eeaacba32afdb9a7775ba7 |
train | train_net | Wrapper for training phase.
Parameters:
----------
net : str
symbol name for the network structure
train_path : str
record file path for training
num_classes : int
number of object classes, not including background
batch_size : int
training batch-size
data_shape : int or tuple
width/height as integer or (3, height, width) tuple
mean_pixels : tuple of floats
mean pixel values for red, green and blue
resume : int
resume from previous checkpoint if > 0
finetune : int
fine-tune from previous checkpoint if > 0
pretrained : str
prefix of pretrained model, including path
epoch : int
load epoch of either resume/finetune/pretrained model
prefix : str
prefix for saving checkpoints
ctx : [mx.cpu()] or [mx.gpu(x)]
list of mxnet contexts
begin_epoch : int
starting epoch for training, should be 0 if not otherwise specified
end_epoch : int
end epoch of training
frequent : int
frequency to print out training status
learning_rate : float
training learning rate
momentum : float
trainig momentum
weight_decay : float
training weight decay param
lr_refactor_ratio : float
multiplier for reducing learning rate
lr_refactor_step : comma separated integers
at which epoch to rescale learning rate, e.g. '30, 60, 90'
freeze_layer_pattern : str
regex pattern for layers need to be fixed
num_example : int
number of training images
label_pad_width : int
force padding training and validation labels to sync their label widths
nms_thresh : float
non-maximum suppression threshold for validation
force_nms : boolean
suppress overlaped objects from different classes
train_list : str
list file path for training, this will replace the embeded labels in record
val_path : str
record file path for validation
val_list : str
list file path for validation, this will replace the embeded labels in record
iter_monitor : int
monitor internal stats in networks if > 0, specified by monitor_pattern
monitor_pattern : str
regex pattern for monitoring network stats
log_file : str
log to file if enabled | example/ssd/train/train_net.py | def train_net(net, train_path, num_classes, batch_size,
data_shape, mean_pixels, resume, finetune, pretrained, epoch,
prefix, ctx, begin_epoch, end_epoch, frequent, learning_rate,
momentum, weight_decay, lr_refactor_step, lr_refactor_ratio,
freeze_layer_pattern='',
num_example=10000, label_pad_width=350,
nms_thresh=0.45, force_nms=False, ovp_thresh=0.5,
use_difficult=False, class_names=None,
voc07_metric=False, nms_topk=400, force_suppress=False,
train_list="", val_path="", val_list="", iter_monitor=0,
monitor_pattern=".*", log_file=None, kv_store=None):
"""
Wrapper for training phase.
Parameters:
----------
net : str
symbol name for the network structure
train_path : str
record file path for training
num_classes : int
number of object classes, not including background
batch_size : int
training batch-size
data_shape : int or tuple
width/height as integer or (3, height, width) tuple
mean_pixels : tuple of floats
mean pixel values for red, green and blue
resume : int
resume from previous checkpoint if > 0
finetune : int
fine-tune from previous checkpoint if > 0
pretrained : str
prefix of pretrained model, including path
epoch : int
load epoch of either resume/finetune/pretrained model
prefix : str
prefix for saving checkpoints
ctx : [mx.cpu()] or [mx.gpu(x)]
list of mxnet contexts
begin_epoch : int
starting epoch for training, should be 0 if not otherwise specified
end_epoch : int
end epoch of training
frequent : int
frequency to print out training status
learning_rate : float
training learning rate
momentum : float
trainig momentum
weight_decay : float
training weight decay param
lr_refactor_ratio : float
multiplier for reducing learning rate
lr_refactor_step : comma separated integers
at which epoch to rescale learning rate, e.g. '30, 60, 90'
freeze_layer_pattern : str
regex pattern for layers need to be fixed
num_example : int
number of training images
label_pad_width : int
force padding training and validation labels to sync their label widths
nms_thresh : float
non-maximum suppression threshold for validation
force_nms : boolean
suppress overlaped objects from different classes
train_list : str
list file path for training, this will replace the embeded labels in record
val_path : str
record file path for validation
val_list : str
list file path for validation, this will replace the embeded labels in record
iter_monitor : int
monitor internal stats in networks if > 0, specified by monitor_pattern
monitor_pattern : str
regex pattern for monitoring network stats
log_file : str
log to file if enabled
"""
# set up logger
logging.basicConfig()
logger = logging.getLogger()
logger.setLevel(logging.INFO)
if log_file:
fh = logging.FileHandler(log_file)
logger.addHandler(fh)
# check args
if isinstance(data_shape, int):
data_shape = (3, data_shape, data_shape)
assert len(data_shape) == 3 and data_shape[0] == 3
prefix += '_' + net + '_' + str(data_shape[1])
if isinstance(mean_pixels, (int, float)):
mean_pixels = [mean_pixels, mean_pixels, mean_pixels]
assert len(mean_pixels) == 3, "must provide all RGB mean values"
train_iter = DetRecordIter(train_path, batch_size, data_shape, mean_pixels=mean_pixels,
label_pad_width=label_pad_width, path_imglist=train_list, **cfg.train)
if val_path:
val_iter = DetRecordIter(val_path, batch_size, data_shape, mean_pixels=mean_pixels,
label_pad_width=label_pad_width, path_imglist=val_list, **cfg.valid)
else:
val_iter = None
# load symbol
net = get_symbol_train(net, data_shape[1], num_classes=num_classes,
nms_thresh=nms_thresh, force_suppress=force_suppress, nms_topk=nms_topk)
# define layers with fixed weight/bias
if freeze_layer_pattern.strip():
re_prog = re.compile(freeze_layer_pattern)
fixed_param_names = [name for name in net.list_arguments() if re_prog.match(name)]
else:
fixed_param_names = None
# load pretrained or resume from previous state
ctx_str = '('+ ','.join([str(c) for c in ctx]) + ')'
if resume > 0:
logger.info("Resume training with {} from epoch {}"
.format(ctx_str, resume))
_, args, auxs = mx.model.load_checkpoint(prefix, resume)
begin_epoch = resume
elif finetune > 0:
logger.info("Start finetuning with {} from epoch {}"
.format(ctx_str, finetune))
_, args, auxs = mx.model.load_checkpoint(prefix, finetune)
begin_epoch = finetune
# the prediction convolution layers name starts with relu, so it's fine
fixed_param_names = [name for name in net.list_arguments() \
if name.startswith('conv')]
elif pretrained:
logger.info("Start training with {} from pretrained model {}"
.format(ctx_str, pretrained))
_, args, auxs = mx.model.load_checkpoint(pretrained, epoch)
args = convert_pretrained(pretrained, args)
else:
logger.info("Experimental: start training from scratch with {}"
.format(ctx_str))
args = None
auxs = None
fixed_param_names = None
# helper information
if fixed_param_names:
logger.info("Freezed parameters: [" + ','.join(fixed_param_names) + ']')
# init training module
mod = mx.mod.Module(net, label_names=('label',), logger=logger, context=ctx,
fixed_param_names=fixed_param_names)
# fit parameters
batch_end_callback = mx.callback.Speedometer(train_iter.batch_size, frequent=frequent)
epoch_end_callback = mx.callback.do_checkpoint(prefix)
learning_rate, lr_scheduler = get_lr_scheduler(learning_rate, lr_refactor_step,
lr_refactor_ratio, num_example, batch_size, begin_epoch)
optimizer_params={'learning_rate':learning_rate,
'momentum':momentum,
'wd':weight_decay,
'lr_scheduler':lr_scheduler,
'clip_gradient':None,
'rescale_grad': 1.0 / len(ctx) if len(ctx) > 0 else 1.0 }
monitor = mx.mon.Monitor(iter_monitor, pattern=monitor_pattern) if iter_monitor > 0 else None
# run fit net, every n epochs we run evaluation network to get mAP
if voc07_metric:
valid_metric = VOC07MApMetric(ovp_thresh, use_difficult, class_names, pred_idx=3)
else:
valid_metric = MApMetric(ovp_thresh, use_difficult, class_names, pred_idx=3)
# create kvstore when there are gpus
kv = mx.kvstore.create(kv_store) if kv_store else None
mod.fit(train_iter,
val_iter,
eval_metric=MultiBoxMetric(),
validation_metric=valid_metric,
batch_end_callback=batch_end_callback,
epoch_end_callback=epoch_end_callback,
optimizer='sgd',
optimizer_params=optimizer_params,
begin_epoch=begin_epoch,
num_epoch=end_epoch,
initializer=mx.init.Xavier(),
arg_params=args,
aux_params=auxs,
allow_missing=True,
monitor=monitor,
kvstore=kv) | def train_net(net, train_path, num_classes, batch_size,
data_shape, mean_pixels, resume, finetune, pretrained, epoch,
prefix, ctx, begin_epoch, end_epoch, frequent, learning_rate,
momentum, weight_decay, lr_refactor_step, lr_refactor_ratio,
freeze_layer_pattern='',
num_example=10000, label_pad_width=350,
nms_thresh=0.45, force_nms=False, ovp_thresh=0.5,
use_difficult=False, class_names=None,
voc07_metric=False, nms_topk=400, force_suppress=False,
train_list="", val_path="", val_list="", iter_monitor=0,
monitor_pattern=".*", log_file=None, kv_store=None):
"""
Wrapper for training phase.
Parameters:
----------
net : str
symbol name for the network structure
train_path : str
record file path for training
num_classes : int
number of object classes, not including background
batch_size : int
training batch-size
data_shape : int or tuple
width/height as integer or (3, height, width) tuple
mean_pixels : tuple of floats
mean pixel values for red, green and blue
resume : int
resume from previous checkpoint if > 0
finetune : int
fine-tune from previous checkpoint if > 0
pretrained : str
prefix of pretrained model, including path
epoch : int
load epoch of either resume/finetune/pretrained model
prefix : str
prefix for saving checkpoints
ctx : [mx.cpu()] or [mx.gpu(x)]
list of mxnet contexts
begin_epoch : int
starting epoch for training, should be 0 if not otherwise specified
end_epoch : int
end epoch of training
frequent : int
frequency to print out training status
learning_rate : float
training learning rate
momentum : float
trainig momentum
weight_decay : float
training weight decay param
lr_refactor_ratio : float
multiplier for reducing learning rate
lr_refactor_step : comma separated integers
at which epoch to rescale learning rate, e.g. '30, 60, 90'
freeze_layer_pattern : str
regex pattern for layers need to be fixed
num_example : int
number of training images
label_pad_width : int
force padding training and validation labels to sync their label widths
nms_thresh : float
non-maximum suppression threshold for validation
force_nms : boolean
suppress overlaped objects from different classes
train_list : str
list file path for training, this will replace the embeded labels in record
val_path : str
record file path for validation
val_list : str
list file path for validation, this will replace the embeded labels in record
iter_monitor : int
monitor internal stats in networks if > 0, specified by monitor_pattern
monitor_pattern : str
regex pattern for monitoring network stats
log_file : str
log to file if enabled
"""
# set up logger
logging.basicConfig()
logger = logging.getLogger()
logger.setLevel(logging.INFO)
if log_file:
fh = logging.FileHandler(log_file)
logger.addHandler(fh)
# check args
if isinstance(data_shape, int):
data_shape = (3, data_shape, data_shape)
assert len(data_shape) == 3 and data_shape[0] == 3
prefix += '_' + net + '_' + str(data_shape[1])
if isinstance(mean_pixels, (int, float)):
mean_pixels = [mean_pixels, mean_pixels, mean_pixels]
assert len(mean_pixels) == 3, "must provide all RGB mean values"
train_iter = DetRecordIter(train_path, batch_size, data_shape, mean_pixels=mean_pixels,
label_pad_width=label_pad_width, path_imglist=train_list, **cfg.train)
if val_path:
val_iter = DetRecordIter(val_path, batch_size, data_shape, mean_pixels=mean_pixels,
label_pad_width=label_pad_width, path_imglist=val_list, **cfg.valid)
else:
val_iter = None
# load symbol
net = get_symbol_train(net, data_shape[1], num_classes=num_classes,
nms_thresh=nms_thresh, force_suppress=force_suppress, nms_topk=nms_topk)
# define layers with fixed weight/bias
if freeze_layer_pattern.strip():
re_prog = re.compile(freeze_layer_pattern)
fixed_param_names = [name for name in net.list_arguments() if re_prog.match(name)]
else:
fixed_param_names = None
# load pretrained or resume from previous state
ctx_str = '('+ ','.join([str(c) for c in ctx]) + ')'
if resume > 0:
logger.info("Resume training with {} from epoch {}"
.format(ctx_str, resume))
_, args, auxs = mx.model.load_checkpoint(prefix, resume)
begin_epoch = resume
elif finetune > 0:
logger.info("Start finetuning with {} from epoch {}"
.format(ctx_str, finetune))
_, args, auxs = mx.model.load_checkpoint(prefix, finetune)
begin_epoch = finetune
# the prediction convolution layers name starts with relu, so it's fine
fixed_param_names = [name for name in net.list_arguments() \
if name.startswith('conv')]
elif pretrained:
logger.info("Start training with {} from pretrained model {}"
.format(ctx_str, pretrained))
_, args, auxs = mx.model.load_checkpoint(pretrained, epoch)
args = convert_pretrained(pretrained, args)
else:
logger.info("Experimental: start training from scratch with {}"
.format(ctx_str))
args = None
auxs = None
fixed_param_names = None
# helper information
if fixed_param_names:
logger.info("Freezed parameters: [" + ','.join(fixed_param_names) + ']')
# init training module
mod = mx.mod.Module(net, label_names=('label',), logger=logger, context=ctx,
fixed_param_names=fixed_param_names)
# fit parameters
batch_end_callback = mx.callback.Speedometer(train_iter.batch_size, frequent=frequent)
epoch_end_callback = mx.callback.do_checkpoint(prefix)
learning_rate, lr_scheduler = get_lr_scheduler(learning_rate, lr_refactor_step,
lr_refactor_ratio, num_example, batch_size, begin_epoch)
optimizer_params={'learning_rate':learning_rate,
'momentum':momentum,
'wd':weight_decay,
'lr_scheduler':lr_scheduler,
'clip_gradient':None,
'rescale_grad': 1.0 / len(ctx) if len(ctx) > 0 else 1.0 }
monitor = mx.mon.Monitor(iter_monitor, pattern=monitor_pattern) if iter_monitor > 0 else None
# run fit net, every n epochs we run evaluation network to get mAP
if voc07_metric:
valid_metric = VOC07MApMetric(ovp_thresh, use_difficult, class_names, pred_idx=3)
else:
valid_metric = MApMetric(ovp_thresh, use_difficult, class_names, pred_idx=3)
# create kvstore when there are gpus
kv = mx.kvstore.create(kv_store) if kv_store else None
mod.fit(train_iter,
val_iter,
eval_metric=MultiBoxMetric(),
validation_metric=valid_metric,
batch_end_callback=batch_end_callback,
epoch_end_callback=epoch_end_callback,
optimizer='sgd',
optimizer_params=optimizer_params,
begin_epoch=begin_epoch,
num_epoch=end_epoch,
initializer=mx.init.Xavier(),
arg_params=args,
aux_params=auxs,
allow_missing=True,
monitor=monitor,
kvstore=kv) | [
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] | apache/incubator-mxnet | python | https://github.com/apache/incubator-mxnet/blob/1af29e9c060a4c7d60eeaacba32afdb9a7775ba7/example/ssd/train/train_net.py#L90-L279 | [
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train | imagenet50 | This is a set of 50 images representative of ImageNet images.
This dataset was collected by randomly finding a working ImageNet link and then pasting the
original ImageNet image into Google image search restricted to images licensed for reuse. A
similar image (now with rights to reuse) was downloaded as a rough replacment for the original
ImageNet image. The point is to have a random sample of ImageNet for use as a background
distribution for explaining models trained on ImageNet data.
Note that because the images are only rough replacements the labels might no longer be correct. | shap/datasets.py | def imagenet50(display=False, resolution=224):
""" This is a set of 50 images representative of ImageNet images.
This dataset was collected by randomly finding a working ImageNet link and then pasting the
original ImageNet image into Google image search restricted to images licensed for reuse. A
similar image (now with rights to reuse) was downloaded as a rough replacment for the original
ImageNet image. The point is to have a random sample of ImageNet for use as a background
distribution for explaining models trained on ImageNet data.
Note that because the images are only rough replacements the labels might no longer be correct.
"""
prefix = github_data_url + "imagenet50_"
X = np.load(cache(prefix + "%sx%s.npy" % (resolution, resolution))).astype(np.float32)
y = np.loadtxt(cache(prefix + "labels.csv"))
return X, y | def imagenet50(display=False, resolution=224):
""" This is a set of 50 images representative of ImageNet images.
This dataset was collected by randomly finding a working ImageNet link and then pasting the
original ImageNet image into Google image search restricted to images licensed for reuse. A
similar image (now with rights to reuse) was downloaded as a rough replacment for the original
ImageNet image. The point is to have a random sample of ImageNet for use as a background
distribution for explaining models trained on ImageNet data.
Note that because the images are only rough replacements the labels might no longer be correct.
"""
prefix = github_data_url + "imagenet50_"
X = np.load(cache(prefix + "%sx%s.npy" % (resolution, resolution))).astype(np.float32)
y = np.loadtxt(cache(prefix + "labels.csv"))
return X, y | [
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] | slundberg/shap | python | https://github.com/slundberg/shap/blob/b280cb81d498b9d98565cad8dd16fc88ae52649f/shap/datasets.py#L13-L28 | [
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train | boston | Return the boston housing data in a nice package. | shap/datasets.py | def boston(display=False):
""" Return the boston housing data in a nice package. """
d = sklearn.datasets.load_boston()
df = pd.DataFrame(data=d.data, columns=d.feature_names) # pylint: disable=E1101
return df, d.target | def boston(display=False):
""" Return the boston housing data in a nice package. """
d = sklearn.datasets.load_boston()
df = pd.DataFrame(data=d.data, columns=d.feature_names) # pylint: disable=E1101
return df, d.target | [
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] | slundberg/shap | python | https://github.com/slundberg/shap/blob/b280cb81d498b9d98565cad8dd16fc88ae52649f/shap/datasets.py#L30-L35 | [
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train | imdb | Return the clssic IMDB sentiment analysis training data in a nice package.
Full data is at: http://ai.stanford.edu/~amaas/data/sentiment/aclImdb_v1.tar.gz
Paper to cite when using the data is: http://www.aclweb.org/anthology/P11-1015 | shap/datasets.py | def imdb(display=False):
""" Return the clssic IMDB sentiment analysis training data in a nice package.
Full data is at: http://ai.stanford.edu/~amaas/data/sentiment/aclImdb_v1.tar.gz
Paper to cite when using the data is: http://www.aclweb.org/anthology/P11-1015
"""
with open(cache(github_data_url + "imdb_train.txt")) as f:
data = f.readlines()
y = np.ones(25000, dtype=np.bool)
y[:12500] = 0
return data, y | def imdb(display=False):
""" Return the clssic IMDB sentiment analysis training data in a nice package.
Full data is at: http://ai.stanford.edu/~amaas/data/sentiment/aclImdb_v1.tar.gz
Paper to cite when using the data is: http://www.aclweb.org/anthology/P11-1015
"""
with open(cache(github_data_url + "imdb_train.txt")) as f:
data = f.readlines()
y = np.ones(25000, dtype=np.bool)
y[:12500] = 0
return data, y | [
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train | communitiesandcrime | Predict total number of non-violent crimes per 100K popuation.
This dataset is from the classic UCI Machine Learning repository:
https://archive.ics.uci.edu/ml/datasets/Communities+and+Crime+Unnormalized | shap/datasets.py | def communitiesandcrime(display=False):
""" Predict total number of non-violent crimes per 100K popuation.
This dataset is from the classic UCI Machine Learning repository:
https://archive.ics.uci.edu/ml/datasets/Communities+and+Crime+Unnormalized
"""
raw_data = pd.read_csv(
cache(github_data_url + "CommViolPredUnnormalizedData.txt"),
na_values="?"
)
# find the indices where the total violent crimes are known
valid_inds = np.where(np.invert(np.isnan(raw_data.iloc[:,-2])))[0]
y = np.array(raw_data.iloc[valid_inds,-2], dtype=np.float)
# extract the predictive features and remove columns with missing values
X = raw_data.iloc[valid_inds,5:-18]
valid_cols = np.where(np.isnan(X.values).sum(0) == 0)[0]
X = X.iloc[:,valid_cols]
return X, y | def communitiesandcrime(display=False):
""" Predict total number of non-violent crimes per 100K popuation.
This dataset is from the classic UCI Machine Learning repository:
https://archive.ics.uci.edu/ml/datasets/Communities+and+Crime+Unnormalized
"""
raw_data = pd.read_csv(
cache(github_data_url + "CommViolPredUnnormalizedData.txt"),
na_values="?"
)
# find the indices where the total violent crimes are known
valid_inds = np.where(np.invert(np.isnan(raw_data.iloc[:,-2])))[0]
y = np.array(raw_data.iloc[valid_inds,-2], dtype=np.float)
# extract the predictive features and remove columns with missing values
X = raw_data.iloc[valid_inds,5:-18]
valid_cols = np.where(np.isnan(X.values).sum(0) == 0)[0]
X = X.iloc[:,valid_cols]
return X, y | [
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] | slundberg/shap | python | https://github.com/slundberg/shap/blob/b280cb81d498b9d98565cad8dd16fc88ae52649f/shap/datasets.py#L50-L71 | [
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train | diabetes | Return the diabetes data in a nice package. | shap/datasets.py | def diabetes(display=False):
""" Return the diabetes data in a nice package. """
d = sklearn.datasets.load_diabetes()
df = pd.DataFrame(data=d.data, columns=d.feature_names) # pylint: disable=E1101
return df, d.target | def diabetes(display=False):
""" Return the diabetes data in a nice package. """
d = sklearn.datasets.load_diabetes()
df = pd.DataFrame(data=d.data, columns=d.feature_names) # pylint: disable=E1101
return df, d.target | [
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train | iris | Return the classic iris data in a nice package. | shap/datasets.py | def iris(display=False):
""" Return the classic iris data in a nice package. """
d = sklearn.datasets.load_iris()
df = pd.DataFrame(data=d.data, columns=d.feature_names) # pylint: disable=E1101
if display:
return df, [d.target_names[v] for v in d.target] # pylint: disable=E1101
else:
return df, d.target | def iris(display=False):
""" Return the classic iris data in a nice package. """
d = sklearn.datasets.load_iris()
df = pd.DataFrame(data=d.data, columns=d.feature_names) # pylint: disable=E1101
if display:
return df, [d.target_names[v] for v in d.target] # pylint: disable=E1101
else:
return df, d.target | [
"Return",
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] | slundberg/shap | python | https://github.com/slundberg/shap/blob/b280cb81d498b9d98565cad8dd16fc88ae52649f/shap/datasets.py#L81-L89 | [
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train | adult | Return the Adult census data in a nice package. | shap/datasets.py | def adult(display=False):
""" Return the Adult census data in a nice package. """
dtypes = [
("Age", "float32"), ("Workclass", "category"), ("fnlwgt", "float32"),
("Education", "category"), ("Education-Num", "float32"), ("Marital Status", "category"),
("Occupation", "category"), ("Relationship", "category"), ("Race", "category"),
("Sex", "category"), ("Capital Gain", "float32"), ("Capital Loss", "float32"),
("Hours per week", "float32"), ("Country", "category"), ("Target", "category")
]
raw_data = pd.read_csv(
cache(github_data_url + "adult.data"),
names=[d[0] for d in dtypes],
na_values="?",
dtype=dict(dtypes)
)
data = raw_data.drop(["Education"], axis=1) # redundant with Education-Num
filt_dtypes = list(filter(lambda x: not (x[0] in ["Target", "Education"]), dtypes))
data["Target"] = data["Target"] == " >50K"
rcode = {
"Not-in-family": 0,
"Unmarried": 1,
"Other-relative": 2,
"Own-child": 3,
"Husband": 4,
"Wife": 5
}
for k, dtype in filt_dtypes:
if dtype == "category":
if k == "Relationship":
data[k] = np.array([rcode[v.strip()] for v in data[k]])
else:
data[k] = data[k].cat.codes
if display:
return raw_data.drop(["Education", "Target", "fnlwgt"], axis=1), data["Target"].values
else:
return data.drop(["Target", "fnlwgt"], axis=1), data["Target"].values | def adult(display=False):
""" Return the Adult census data in a nice package. """
dtypes = [
("Age", "float32"), ("Workclass", "category"), ("fnlwgt", "float32"),
("Education", "category"), ("Education-Num", "float32"), ("Marital Status", "category"),
("Occupation", "category"), ("Relationship", "category"), ("Race", "category"),
("Sex", "category"), ("Capital Gain", "float32"), ("Capital Loss", "float32"),
("Hours per week", "float32"), ("Country", "category"), ("Target", "category")
]
raw_data = pd.read_csv(
cache(github_data_url + "adult.data"),
names=[d[0] for d in dtypes],
na_values="?",
dtype=dict(dtypes)
)
data = raw_data.drop(["Education"], axis=1) # redundant with Education-Num
filt_dtypes = list(filter(lambda x: not (x[0] in ["Target", "Education"]), dtypes))
data["Target"] = data["Target"] == " >50K"
rcode = {
"Not-in-family": 0,
"Unmarried": 1,
"Other-relative": 2,
"Own-child": 3,
"Husband": 4,
"Wife": 5
}
for k, dtype in filt_dtypes:
if dtype == "category":
if k == "Relationship":
data[k] = np.array([rcode[v.strip()] for v in data[k]])
else:
data[k] = data[k].cat.codes
if display:
return raw_data.drop(["Education", "Target", "fnlwgt"], axis=1), data["Target"].values
else:
return data.drop(["Target", "fnlwgt"], axis=1), data["Target"].values | [
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train | nhanesi | A nicely packaged version of NHANES I data with surivival times as labels. | shap/datasets.py | def nhanesi(display=False):
""" A nicely packaged version of NHANES I data with surivival times as labels.
"""
X = pd.read_csv(cache(github_data_url + "NHANESI_subset_X.csv"))
y = pd.read_csv(cache(github_data_url + "NHANESI_subset_y.csv"))["y"]
if display:
X_display = X.copy()
X_display["Sex"] = ["Male" if v == 1 else "Female" for v in X["Sex"]]
return X_display, np.array(y)
else:
return X, np.array(y) | def nhanesi(display=False):
""" A nicely packaged version of NHANES I data with surivival times as labels.
"""
X = pd.read_csv(cache(github_data_url + "NHANESI_subset_X.csv"))
y = pd.read_csv(cache(github_data_url + "NHANESI_subset_y.csv"))["y"]
if display:
X_display = X.copy()
X_display["Sex"] = ["Male" if v == 1 else "Female" for v in X["Sex"]]
return X_display, np.array(y)
else:
return X, np.array(y) | [
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] | slundberg/shap | python | https://github.com/slundberg/shap/blob/b280cb81d498b9d98565cad8dd16fc88ae52649f/shap/datasets.py#L131-L141 | [
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train | cric | A nicely packaged version of CRIC data with progression to ESRD within 4 years as the label. | shap/datasets.py | def cric(display=False):
""" A nicely packaged version of CRIC data with progression to ESRD within 4 years as the label.
"""
X = pd.read_csv(cache(github_data_url + "CRIC_time_4yearESRD_X.csv"))
y = np.loadtxt(cache(github_data_url + "CRIC_time_4yearESRD_y.csv"))
if display:
X_display = X.copy()
return X_display, y
else:
return X, y | def cric(display=False):
""" A nicely packaged version of CRIC data with progression to ESRD within 4 years as the label.
"""
X = pd.read_csv(cache(github_data_url + "CRIC_time_4yearESRD_X.csv"))
y = np.loadtxt(cache(github_data_url + "CRIC_time_4yearESRD_y.csv"))
if display:
X_display = X.copy()
return X_display, y
else:
return X, y | [
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] | slundberg/shap | python | https://github.com/slundberg/shap/blob/b280cb81d498b9d98565cad8dd16fc88ae52649f/shap/datasets.py#L143-L152 | [
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train | corrgroups60 | Correlated Groups 60
A simulated dataset with tight correlations among distinct groups of features. | shap/datasets.py | def corrgroups60(display=False):
""" Correlated Groups 60
A simulated dataset with tight correlations among distinct groups of features.
"""
# set a constant seed
old_seed = np.random.seed()
np.random.seed(0)
# generate dataset with known correlation
N = 1000
M = 60
# set one coefficent from each group of 3 to 1
beta = np.zeros(M)
beta[0:30:3] = 1
# build a correlation matrix with groups of 3 tightly correlated features
C = np.eye(M)
for i in range(0,30,3):
C[i,i+1] = C[i+1,i] = 0.99
C[i,i+2] = C[i+2,i] = 0.99
C[i+1,i+2] = C[i+2,i+1] = 0.99
f = lambda X: np.matmul(X, beta)
# Make sure the sample correlation is a perfect match
X_start = np.random.randn(N, M)
X_centered = X_start - X_start.mean(0)
Sigma = np.matmul(X_centered.T, X_centered) / X_centered.shape[0]
W = np.linalg.cholesky(np.linalg.inv(Sigma)).T
X_white = np.matmul(X_centered, W.T)
assert np.linalg.norm(np.corrcoef(np.matmul(X_centered, W.T).T) - np.eye(M)) < 1e-6 # ensure this decorrelates the data
# create the final data
X_final = np.matmul(X_white, np.linalg.cholesky(C).T)
X = X_final
y = f(X) + np.random.randn(N) * 1e-2
# restore the previous numpy random seed
np.random.seed(old_seed)
return pd.DataFrame(X), y | def corrgroups60(display=False):
""" Correlated Groups 60
A simulated dataset with tight correlations among distinct groups of features.
"""
# set a constant seed
old_seed = np.random.seed()
np.random.seed(0)
# generate dataset with known correlation
N = 1000
M = 60
# set one coefficent from each group of 3 to 1
beta = np.zeros(M)
beta[0:30:3] = 1
# build a correlation matrix with groups of 3 tightly correlated features
C = np.eye(M)
for i in range(0,30,3):
C[i,i+1] = C[i+1,i] = 0.99
C[i,i+2] = C[i+2,i] = 0.99
C[i+1,i+2] = C[i+2,i+1] = 0.99
f = lambda X: np.matmul(X, beta)
# Make sure the sample correlation is a perfect match
X_start = np.random.randn(N, M)
X_centered = X_start - X_start.mean(0)
Sigma = np.matmul(X_centered.T, X_centered) / X_centered.shape[0]
W = np.linalg.cholesky(np.linalg.inv(Sigma)).T
X_white = np.matmul(X_centered, W.T)
assert np.linalg.norm(np.corrcoef(np.matmul(X_centered, W.T).T) - np.eye(M)) < 1e-6 # ensure this decorrelates the data
# create the final data
X_final = np.matmul(X_white, np.linalg.cholesky(C).T)
X = X_final
y = f(X) + np.random.randn(N) * 1e-2
# restore the previous numpy random seed
np.random.seed(old_seed)
return pd.DataFrame(X), y | [
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train | independentlinear60 | A simulated dataset with tight correlations among distinct groups of features. | shap/datasets.py | def independentlinear60(display=False):
""" A simulated dataset with tight correlations among distinct groups of features.
"""
# set a constant seed
old_seed = np.random.seed()
np.random.seed(0)
# generate dataset with known correlation
N = 1000
M = 60
# set one coefficent from each group of 3 to 1
beta = np.zeros(M)
beta[0:30:3] = 1
f = lambda X: np.matmul(X, beta)
# Make sure the sample correlation is a perfect match
X_start = np.random.randn(N, M)
X = X_start - X_start.mean(0)
y = f(X) + np.random.randn(N) * 1e-2
# restore the previous numpy random seed
np.random.seed(old_seed)
return pd.DataFrame(X), y | def independentlinear60(display=False):
""" A simulated dataset with tight correlations among distinct groups of features.
"""
# set a constant seed
old_seed = np.random.seed()
np.random.seed(0)
# generate dataset with known correlation
N = 1000
M = 60
# set one coefficent from each group of 3 to 1
beta = np.zeros(M)
beta[0:30:3] = 1
f = lambda X: np.matmul(X, beta)
# Make sure the sample correlation is a perfect match
X_start = np.random.randn(N, M)
X = X_start - X_start.mean(0)
y = f(X) + np.random.randn(N) * 1e-2
# restore the previous numpy random seed
np.random.seed(old_seed)
return pd.DataFrame(X), y | [
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] | slundberg/shap | python | https://github.com/slundberg/shap/blob/b280cb81d498b9d98565cad8dd16fc88ae52649f/shap/datasets.py#L200-L225 | [
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train | rank | Ranking datasets from lightgbm repository. | shap/datasets.py | def rank():
""" Ranking datasets from lightgbm repository.
"""
rank_data_url = 'https://raw.githubusercontent.com/Microsoft/LightGBM/master/examples/lambdarank/'
x_train, y_train = sklearn.datasets.load_svmlight_file(cache(rank_data_url + 'rank.train'))
x_test, y_test = sklearn.datasets.load_svmlight_file(cache(rank_data_url + 'rank.test'))
q_train = np.loadtxt(cache(rank_data_url + 'rank.train.query'))
q_test = np.loadtxt(cache(rank_data_url + 'rank.test.query'))
return x_train, y_train, x_test, y_test, q_train, q_test | def rank():
""" Ranking datasets from lightgbm repository.
"""
rank_data_url = 'https://raw.githubusercontent.com/Microsoft/LightGBM/master/examples/lambdarank/'
x_train, y_train = sklearn.datasets.load_svmlight_file(cache(rank_data_url + 'rank.train'))
x_test, y_test = sklearn.datasets.load_svmlight_file(cache(rank_data_url + 'rank.test'))
q_train = np.loadtxt(cache(rank_data_url + 'rank.train.query'))
q_test = np.loadtxt(cache(rank_data_url + 'rank.test.query'))
return x_train, y_train, x_test, y_test, q_train, q_test | [
"Ranking",
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] | slundberg/shap | python | https://github.com/slundberg/shap/blob/b280cb81d498b9d98565cad8dd16fc88ae52649f/shap/datasets.py#L234-L242 | [
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train | batch_remove_retrain | An approximation of holdout that only retraines the model once.
This is alse called ROAR (RemOve And Retrain) in work by Google. It is much more computationally
efficient that the holdout method because it masks the most important features in every sample
and then retrains the model once, instead of retraining the model for every test sample like
the holdout metric. | shap/benchmark/measures.py | def batch_remove_retrain(nmask_train, nmask_test, X_train, y_train, X_test, y_test, attr_train, attr_test, model_generator, metric):
""" An approximation of holdout that only retraines the model once.
This is alse called ROAR (RemOve And Retrain) in work by Google. It is much more computationally
efficient that the holdout method because it masks the most important features in every sample
and then retrains the model once, instead of retraining the model for every test sample like
the holdout metric.
"""
warnings.warn("The retrain based measures can incorrectly evaluate models in some cases!")
X_train, X_test = to_array(X_train, X_test)
# how many features to mask
assert X_train.shape[1] == X_test.shape[1]
# mask nmask top features for each explanation
X_train_tmp = X_train.copy()
X_train_mean = X_train.mean(0)
tie_breaking_noise = const_rand(X_train.shape[1]) * 1e-6
for i in range(len(y_train)):
if nmask_train[i] > 0:
ordering = np.argsort(-attr_train[i, :] + tie_breaking_noise)
X_train_tmp[i, ordering[:nmask_train[i]]] = X_train_mean[ordering[:nmask_train[i]]]
X_test_tmp = X_test.copy()
for i in range(len(y_test)):
if nmask_test[i] > 0:
ordering = np.argsort(-attr_test[i, :] + tie_breaking_noise)
X_test_tmp[i, ordering[:nmask_test[i]]] = X_train_mean[ordering[:nmask_test[i]]]
# train the model with all the given features masked
model_masked = model_generator()
model_masked.fit(X_train_tmp, y_train)
yp_test_masked = model_masked.predict(X_test_tmp)
return metric(y_test, yp_test_masked) | def batch_remove_retrain(nmask_train, nmask_test, X_train, y_train, X_test, y_test, attr_train, attr_test, model_generator, metric):
""" An approximation of holdout that only retraines the model once.
This is alse called ROAR (RemOve And Retrain) in work by Google. It is much more computationally
efficient that the holdout method because it masks the most important features in every sample
and then retrains the model once, instead of retraining the model for every test sample like
the holdout metric.
"""
warnings.warn("The retrain based measures can incorrectly evaluate models in some cases!")
X_train, X_test = to_array(X_train, X_test)
# how many features to mask
assert X_train.shape[1] == X_test.shape[1]
# mask nmask top features for each explanation
X_train_tmp = X_train.copy()
X_train_mean = X_train.mean(0)
tie_breaking_noise = const_rand(X_train.shape[1]) * 1e-6
for i in range(len(y_train)):
if nmask_train[i] > 0:
ordering = np.argsort(-attr_train[i, :] + tie_breaking_noise)
X_train_tmp[i, ordering[:nmask_train[i]]] = X_train_mean[ordering[:nmask_train[i]]]
X_test_tmp = X_test.copy()
for i in range(len(y_test)):
if nmask_test[i] > 0:
ordering = np.argsort(-attr_test[i, :] + tie_breaking_noise)
X_test_tmp[i, ordering[:nmask_test[i]]] = X_train_mean[ordering[:nmask_test[i]]]
# train the model with all the given features masked
model_masked = model_generator()
model_masked.fit(X_train_tmp, y_train)
yp_test_masked = model_masked.predict(X_test_tmp)
return metric(y_test, yp_test_masked) | [
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] | slundberg/shap | python | https://github.com/slundberg/shap/blob/b280cb81d498b9d98565cad8dd16fc88ae52649f/shap/benchmark/measures.py#L158-L193 | [
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train | keep_retrain | The model is retrained for each test sample with the non-important features set to a constant.
If you want to know how important a set of features is you can ask how the model would be
different if only those features had existed. To determine this we can mask the other features
across the entire training and test datasets, then retrain the model. If we apply compare the
output of this retrained model to the original model we can see the effect produced by only
knowning the important features. Since for individualized explanation methods each test sample
has a different set of most important features we need to retrain the model for every test sample
to get the change in model performance when a specified fraction of the most important features
are retained. | shap/benchmark/measures.py | def keep_retrain(nkeep, X_train, y_train, X_test, y_test, attr_test, model_generator, metric, trained_model, random_state):
""" The model is retrained for each test sample with the non-important features set to a constant.
If you want to know how important a set of features is you can ask how the model would be
different if only those features had existed. To determine this we can mask the other features
across the entire training and test datasets, then retrain the model. If we apply compare the
output of this retrained model to the original model we can see the effect produced by only
knowning the important features. Since for individualized explanation methods each test sample
has a different set of most important features we need to retrain the model for every test sample
to get the change in model performance when a specified fraction of the most important features
are retained.
"""
warnings.warn("The retrain based measures can incorrectly evaluate models in some cases!")
# see if we match the last cached call
global _keep_cache
args = (X_train, y_train, X_test, y_test, model_generator, metric)
cache_match = False
if "args" in _keep_cache:
if all(a is b for a,b in zip(_keep_cache["args"], args)) and np.all(_keep_cache["attr_test"] == attr_test):
cache_match = True
X_train, X_test = to_array(X_train, X_test)
# how many features to mask
assert X_train.shape[1] == X_test.shape[1]
# this is the model we will retrain many times
model_masked = model_generator()
# keep nkeep top features and re-train the model for each test explanation
X_train_tmp = np.zeros(X_train.shape)
X_test_tmp = np.zeros(X_test.shape)
yp_masked_test = np.zeros(y_test.shape)
tie_breaking_noise = const_rand(X_train.shape[1]) * 1e-6
last_nkeep = _keep_cache.get("nkeep", None)
last_yp_masked_test = _keep_cache.get("yp_masked_test", None)
for i in tqdm(range(len(y_test)), "Retraining for the 'keep' metric"):
if cache_match and last_nkeep[i] == nkeep[i]:
yp_masked_test[i] = last_yp_masked_test[i]
elif nkeep[i] == attr_test.shape[1]:
yp_masked_test[i] = trained_model.predict(X_test[i:i+1])[0]
else:
# mask out the most important features for this test instance
X_train_tmp[:] = X_train
X_test_tmp[:] = X_test
ordering = np.argsort(-attr_test[i,:] + tie_breaking_noise)
X_train_tmp[:,ordering[nkeep[i]:]] = X_train[:,ordering[nkeep[i]:]].mean()
X_test_tmp[i,ordering[nkeep[i]:]] = X_train[:,ordering[nkeep[i]:]].mean()
# retrain the model and make a prediction
model_masked.fit(X_train_tmp, y_train)
yp_masked_test[i] = model_masked.predict(X_test_tmp[i:i+1])[0]
# save our results so the next call to us can be faster when there is redundancy
_keep_cache["nkeep"] = nkeep
_keep_cache["yp_masked_test"] = yp_masked_test
_keep_cache["attr_test"] = attr_test
_keep_cache["args"] = args
return metric(y_test, yp_masked_test) | def keep_retrain(nkeep, X_train, y_train, X_test, y_test, attr_test, model_generator, metric, trained_model, random_state):
""" The model is retrained for each test sample with the non-important features set to a constant.
If you want to know how important a set of features is you can ask how the model would be
different if only those features had existed. To determine this we can mask the other features
across the entire training and test datasets, then retrain the model. If we apply compare the
output of this retrained model to the original model we can see the effect produced by only
knowning the important features. Since for individualized explanation methods each test sample
has a different set of most important features we need to retrain the model for every test sample
to get the change in model performance when a specified fraction of the most important features
are retained.
"""
warnings.warn("The retrain based measures can incorrectly evaluate models in some cases!")
# see if we match the last cached call
global _keep_cache
args = (X_train, y_train, X_test, y_test, model_generator, metric)
cache_match = False
if "args" in _keep_cache:
if all(a is b for a,b in zip(_keep_cache["args"], args)) and np.all(_keep_cache["attr_test"] == attr_test):
cache_match = True
X_train, X_test = to_array(X_train, X_test)
# how many features to mask
assert X_train.shape[1] == X_test.shape[1]
# this is the model we will retrain many times
model_masked = model_generator()
# keep nkeep top features and re-train the model for each test explanation
X_train_tmp = np.zeros(X_train.shape)
X_test_tmp = np.zeros(X_test.shape)
yp_masked_test = np.zeros(y_test.shape)
tie_breaking_noise = const_rand(X_train.shape[1]) * 1e-6
last_nkeep = _keep_cache.get("nkeep", None)
last_yp_masked_test = _keep_cache.get("yp_masked_test", None)
for i in tqdm(range(len(y_test)), "Retraining for the 'keep' metric"):
if cache_match and last_nkeep[i] == nkeep[i]:
yp_masked_test[i] = last_yp_masked_test[i]
elif nkeep[i] == attr_test.shape[1]:
yp_masked_test[i] = trained_model.predict(X_test[i:i+1])[0]
else:
# mask out the most important features for this test instance
X_train_tmp[:] = X_train
X_test_tmp[:] = X_test
ordering = np.argsort(-attr_test[i,:] + tie_breaking_noise)
X_train_tmp[:,ordering[nkeep[i]:]] = X_train[:,ordering[nkeep[i]:]].mean()
X_test_tmp[i,ordering[nkeep[i]:]] = X_train[:,ordering[nkeep[i]:]].mean()
# retrain the model and make a prediction
model_masked.fit(X_train_tmp, y_train)
yp_masked_test[i] = model_masked.predict(X_test_tmp[i:i+1])[0]
# save our results so the next call to us can be faster when there is redundancy
_keep_cache["nkeep"] = nkeep
_keep_cache["yp_masked_test"] = yp_masked_test
_keep_cache["attr_test"] = attr_test
_keep_cache["args"] = args
return metric(y_test, yp_masked_test) | [
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train | keep_mask | The model is revaluated for each test sample with the non-important features set to their mean. | shap/benchmark/measures.py | def keep_mask(nkeep, X_train, y_train, X_test, y_test, attr_test, model_generator, metric, trained_model, random_state):
""" The model is revaluated for each test sample with the non-important features set to their mean.
"""
X_train, X_test = to_array(X_train, X_test)
# how many features to mask
assert X_train.shape[1] == X_test.shape[1]
# keep nkeep top features for each test explanation
X_test_tmp = X_test.copy()
yp_masked_test = np.zeros(y_test.shape)
tie_breaking_noise = const_rand(X_train.shape[1], random_state) * 1e-6
mean_vals = X_train.mean(0)
for i in range(len(y_test)):
if nkeep[i] < X_test.shape[1]:
ordering = np.argsort(-attr_test[i,:] + tie_breaking_noise)
X_test_tmp[i,ordering[nkeep[i]:]] = mean_vals[ordering[nkeep[i]:]]
yp_masked_test = trained_model.predict(X_test_tmp)
return metric(y_test, yp_masked_test) | def keep_mask(nkeep, X_train, y_train, X_test, y_test, attr_test, model_generator, metric, trained_model, random_state):
""" The model is revaluated for each test sample with the non-important features set to their mean.
"""
X_train, X_test = to_array(X_train, X_test)
# how many features to mask
assert X_train.shape[1] == X_test.shape[1]
# keep nkeep top features for each test explanation
X_test_tmp = X_test.copy()
yp_masked_test = np.zeros(y_test.shape)
tie_breaking_noise = const_rand(X_train.shape[1], random_state) * 1e-6
mean_vals = X_train.mean(0)
for i in range(len(y_test)):
if nkeep[i] < X_test.shape[1]:
ordering = np.argsort(-attr_test[i,:] + tie_breaking_noise)
X_test_tmp[i,ordering[nkeep[i]:]] = mean_vals[ordering[nkeep[i]:]]
yp_masked_test = trained_model.predict(X_test_tmp)
return metric(y_test, yp_masked_test) | [
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] | slundberg/shap | python | https://github.com/slundberg/shap/blob/b280cb81d498b9d98565cad8dd16fc88ae52649f/shap/benchmark/measures.py#L260-L281 | [
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"X... | b280cb81d498b9d98565cad8dd16fc88ae52649f |
train | keep_impute | The model is revaluated for each test sample with the non-important features set to an imputed value.
Note that the imputation is done using a multivariate normality assumption on the dataset. This depends on
being able to estimate the full data covariance matrix (and inverse) accuractly. So X_train.shape[0] should
be significantly bigger than X_train.shape[1]. | shap/benchmark/measures.py | def keep_impute(nkeep, X_train, y_train, X_test, y_test, attr_test, model_generator, metric, trained_model, random_state):
""" The model is revaluated for each test sample with the non-important features set to an imputed value.
Note that the imputation is done using a multivariate normality assumption on the dataset. This depends on
being able to estimate the full data covariance matrix (and inverse) accuractly. So X_train.shape[0] should
be significantly bigger than X_train.shape[1].
"""
X_train, X_test = to_array(X_train, X_test)
# how many features to mask
assert X_train.shape[1] == X_test.shape[1]
# keep nkeep top features for each test explanation
C = np.cov(X_train.T)
C += np.eye(C.shape[0]) * 1e-6
X_test_tmp = X_test.copy()
yp_masked_test = np.zeros(y_test.shape)
tie_breaking_noise = const_rand(X_train.shape[1], random_state) * 1e-6
mean_vals = X_train.mean(0)
for i in range(len(y_test)):
if nkeep[i] < X_test.shape[1]:
ordering = np.argsort(-attr_test[i,:] + tie_breaking_noise)
observe_inds = ordering[:nkeep[i]]
impute_inds = ordering[nkeep[i]:]
# impute missing data assuming it follows a multivariate normal distribution
Coo_inv = np.linalg.inv(C[observe_inds,:][:,observe_inds])
Cio = C[impute_inds,:][:,observe_inds]
impute = mean_vals[impute_inds] + Cio @ Coo_inv @ (X_test[i, observe_inds] - mean_vals[observe_inds])
X_test_tmp[i, impute_inds] = impute
yp_masked_test = trained_model.predict(X_test_tmp)
return metric(y_test, yp_masked_test) | def keep_impute(nkeep, X_train, y_train, X_test, y_test, attr_test, model_generator, metric, trained_model, random_state):
""" The model is revaluated for each test sample with the non-important features set to an imputed value.
Note that the imputation is done using a multivariate normality assumption on the dataset. This depends on
being able to estimate the full data covariance matrix (and inverse) accuractly. So X_train.shape[0] should
be significantly bigger than X_train.shape[1].
"""
X_train, X_test = to_array(X_train, X_test)
# how many features to mask
assert X_train.shape[1] == X_test.shape[1]
# keep nkeep top features for each test explanation
C = np.cov(X_train.T)
C += np.eye(C.shape[0]) * 1e-6
X_test_tmp = X_test.copy()
yp_masked_test = np.zeros(y_test.shape)
tie_breaking_noise = const_rand(X_train.shape[1], random_state) * 1e-6
mean_vals = X_train.mean(0)
for i in range(len(y_test)):
if nkeep[i] < X_test.shape[1]:
ordering = np.argsort(-attr_test[i,:] + tie_breaking_noise)
observe_inds = ordering[:nkeep[i]]
impute_inds = ordering[nkeep[i]:]
# impute missing data assuming it follows a multivariate normal distribution
Coo_inv = np.linalg.inv(C[observe_inds,:][:,observe_inds])
Cio = C[impute_inds,:][:,observe_inds]
impute = mean_vals[impute_inds] + Cio @ Coo_inv @ (X_test[i, observe_inds] - mean_vals[observe_inds])
X_test_tmp[i, impute_inds] = impute
yp_masked_test = trained_model.predict(X_test_tmp)
return metric(y_test, yp_masked_test) | [
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] | slundberg/shap | python | https://github.com/slundberg/shap/blob/b280cb81d498b9d98565cad8dd16fc88ae52649f/shap/benchmark/measures.py#L283-L318 | [
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... | b280cb81d498b9d98565cad8dd16fc88ae52649f |
train | keep_resample | The model is revaluated for each test sample with the non-important features set to resample background values. | shap/benchmark/measures.py | def keep_resample(nkeep, X_train, y_train, X_test, y_test, attr_test, model_generator, metric, trained_model, random_state):
""" The model is revaluated for each test sample with the non-important features set to resample background values.
""" # why broken? overwriting?
X_train, X_test = to_array(X_train, X_test)
# how many features to mask
assert X_train.shape[1] == X_test.shape[1]
# how many samples to take
nsamples = 100
# keep nkeep top features for each test explanation
N,M = X_test.shape
X_test_tmp = np.tile(X_test, [1, nsamples]).reshape(nsamples * N, M)
tie_breaking_noise = const_rand(M) * 1e-6
inds = sklearn.utils.resample(np.arange(N), n_samples=nsamples, random_state=random_state)
for i in range(N):
if nkeep[i] < M:
ordering = np.argsort(-attr_test[i,:] + tie_breaking_noise)
X_test_tmp[i*nsamples:(i+1)*nsamples, ordering[nkeep[i]:]] = X_train[inds, :][:, ordering[nkeep[i]:]]
yp_masked_test = trained_model.predict(X_test_tmp)
yp_masked_test = np.reshape(yp_masked_test, (N, nsamples)).mean(1) # take the mean output over all samples
return metric(y_test, yp_masked_test) | def keep_resample(nkeep, X_train, y_train, X_test, y_test, attr_test, model_generator, metric, trained_model, random_state):
""" The model is revaluated for each test sample with the non-important features set to resample background values.
""" # why broken? overwriting?
X_train, X_test = to_array(X_train, X_test)
# how many features to mask
assert X_train.shape[1] == X_test.shape[1]
# how many samples to take
nsamples = 100
# keep nkeep top features for each test explanation
N,M = X_test.shape
X_test_tmp = np.tile(X_test, [1, nsamples]).reshape(nsamples * N, M)
tie_breaking_noise = const_rand(M) * 1e-6
inds = sklearn.utils.resample(np.arange(N), n_samples=nsamples, random_state=random_state)
for i in range(N):
if nkeep[i] < M:
ordering = np.argsort(-attr_test[i,:] + tie_breaking_noise)
X_test_tmp[i*nsamples:(i+1)*nsamples, ordering[nkeep[i]:]] = X_train[inds, :][:, ordering[nkeep[i]:]]
yp_masked_test = trained_model.predict(X_test_tmp)
yp_masked_test = np.reshape(yp_masked_test, (N, nsamples)).mean(1) # take the mean output over all samples
return metric(y_test, yp_masked_test) | [
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"-",
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"features",
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"resample",
"background",
"values",
"."
] | slundberg/shap | python | https://github.com/slundberg/shap/blob/b280cb81d498b9d98565cad8dd16fc88ae52649f/shap/benchmark/measures.py#L320-L345 | [
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",",
"X_tes... | b280cb81d498b9d98565cad8dd16fc88ae52649f |
train | local_accuracy | The how well do the features plus a constant base rate sum up to the model output. | shap/benchmark/measures.py | def local_accuracy(X_train, y_train, X_test, y_test, attr_test, model_generator, metric, trained_model):
""" The how well do the features plus a constant base rate sum up to the model output.
"""
X_train, X_test = to_array(X_train, X_test)
# how many features to mask
assert X_train.shape[1] == X_test.shape[1]
# keep nkeep top features and re-train the model for each test explanation
yp_test = trained_model.predict(X_test)
return metric(yp_test, strip_list(attr_test).sum(1)) | def local_accuracy(X_train, y_train, X_test, y_test, attr_test, model_generator, metric, trained_model):
""" The how well do the features plus a constant base rate sum up to the model output.
"""
X_train, X_test = to_array(X_train, X_test)
# how many features to mask
assert X_train.shape[1] == X_test.shape[1]
# keep nkeep top features and re-train the model for each test explanation
yp_test = trained_model.predict(X_test)
return metric(yp_test, strip_list(attr_test).sum(1)) | [
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"a",
"constant",
"base",
"rate",
"sum",
"up",
"to",
"the",
"model",
"output",
"."
] | slundberg/shap | python | https://github.com/slundberg/shap/blob/b280cb81d498b9d98565cad8dd16fc88ae52649f/shap/benchmark/measures.py#L384-L396 | [
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"(",
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")",
"... | b280cb81d498b9d98565cad8dd16fc88ae52649f |
train | const_rand | Generate a random array with a fixed seed. | shap/benchmark/measures.py | def const_rand(size, seed=23980):
""" Generate a random array with a fixed seed.
"""
old_seed = np.random.seed()
np.random.seed(seed)
out = np.random.rand(size)
np.random.seed(old_seed)
return out | def const_rand(size, seed=23980):
""" Generate a random array with a fixed seed.
"""
old_seed = np.random.seed()
np.random.seed(seed)
out = np.random.rand(size)
np.random.seed(old_seed)
return out | [
"Generate",
"a",
"random",
"array",
"with",
"a",
"fixed",
"seed",
"."
] | slundberg/shap | python | https://github.com/slundberg/shap/blob/b280cb81d498b9d98565cad8dd16fc88ae52649f/shap/benchmark/measures.py#L401-L408 | [
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"... | b280cb81d498b9d98565cad8dd16fc88ae52649f |
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