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twisted/txaws | txaws/server/schema.py | Structure.format | def format(self, value):
"""
Convert a dictionary of processed values to a dictionary of raw values.
"""
if not isinstance(value, Arguments):
value = value.iteritems()
return dict((k, self.fields[k].format(v)) for k, v in value) | python | def format(self, value):
"""
Convert a dictionary of processed values to a dictionary of raw values.
"""
if not isinstance(value, Arguments):
value = value.iteritems()
return dict((k, self.fields[k].format(v)) for k, v in value) | [
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twisted/txaws | txaws/server/schema.py | Arguments._wrap | def _wrap(self, value):
"""Wrap the given L{tree} with L{Arguments} as necessary.
@param tree: A {dict}, containing L{dict}s and/or leaf values, nested
arbitrarily deep.
"""
if isinstance(value, dict):
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... | python | def _wrap(self, value):
"""Wrap the given L{tree} with L{Arguments} as necessary.
@param tree: A {dict}, containing L{dict}s and/or leaf values, nested
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twisted/txaws | txaws/server/schema.py | Schema.extract | def extract(self, params):
"""Extract parameters from a raw C{dict} according to this schema.
@param params: The raw parameters to parse.
@return: A tuple of an L{Arguments} object holding the extracted
arguments and any unparsed arguments.
"""
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"""Extract parameters from a raw C{dict} according to this schema.
@param params: The raw parameters to parse.
@return: A tuple of an L{Arguments} object holding the extracted
arguments and any unparsed arguments.
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twisted/txaws | txaws/server/schema.py | Schema.bundle | def bundle(self, *arguments, **extra):
"""Bundle the given arguments in a C{dict} with EC2-style format.
@param arguments: L{Arguments} instances to bundle. Keys in
later objects will override those in earlier objects.
@param extra: Any number of additional parameters. These will ov... | python | def bundle(self, *arguments, **extra):
"""Bundle the given arguments in a C{dict} with EC2-style format.
@param arguments: L{Arguments} instances to bundle. Keys in
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twisted/txaws | txaws/server/schema.py | Schema.get_parameter | def get_parameter(self, name):
"""
Get the parameter on this schema with the given C{name}.
"""
for parameter in self._parameters:
if parameter.name == name:
return parameter | python | def get_parameter(self, name):
"""
Get the parameter on this schema with the given C{name}.
"""
for parameter in self._parameters:
if parameter.name == name:
return parameter | [
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twisted/txaws | txaws/server/schema.py | Schema._convert_flat_to_nest | def _convert_flat_to_nest(self, params):
"""
Convert a structure in the form of::
{'foo.1.bar': 'value',
'foo.2.baz': 'value'}
to::
{'foo': {'1': {'bar': 'value'},
'2': {'baz': 'value'}}}
This is intended for use both during p... | python | def _convert_flat_to_nest(self, params):
"""
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{'foo.1.bar': 'value',
'foo.2.baz': 'value'}
to::
{'foo': {'1': {'bar': 'value'},
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twisted/txaws | txaws/server/schema.py | Schema._convert_nest_to_flat | def _convert_nest_to_flat(self, params, _result=None, _prefix=None):
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to::
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This is the inverse of L{_convert_flat_to_n... | python | def _convert_nest_to_flat(self, params, _result=None, _prefix=None):
"""
Convert a data structure that looks like::
{"foo": {"bar": "baz", "shimmy": "sham"}}
to::
{"foo.bar": "baz",
"foo.shimmy": "sham"}
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twisted/txaws | txaws/server/schema.py | Schema.extend | def extend(self, *schema_items, **kwargs):
"""
Add any number of schema items to a new schema.
Takes the same arguments as the constructor, and returns a new
L{Schema} instance.
If parameters, result, or errors is specified, they will be merged with
the existing paramet... | python | def extend(self, *schema_items, **kwargs):
"""
Add any number of schema items to a new schema.
Takes the same arguments as the constructor, and returns a new
L{Schema} instance.
If parameters, result, or errors is specified, they will be merged with
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twisted/txaws | txaws/server/schema.py | Schema._convert_old_schema | def _convert_old_schema(self, parameters):
"""
Convert an ugly old schema, using dotted names, to the hot new schema,
using List and Structure.
The old schema assumes that every other dot implies an array. So a list
of two parameters,
[Integer("foo.bar.baz.quux"), I... | python | def _convert_old_schema(self, parameters):
"""
Convert an ugly old schema, using dotted names, to the hot new schema,
using List and Structure.
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twisted/txaws | txaws/server/schema.py | Schema._inner_convert_old_schema | def _inner_convert_old_schema(self, node, depth):
"""
Internal recursion helper for L{_convert_old_schema}.
@param node: A node in the associative list tree as described in
_convert_old_schema. A two tuple of (name, parameter).
@param depth: The depth that the node is at. Th... | python | def _inner_convert_old_schema(self, node, depth):
"""
Internal recursion helper for L{_convert_old_schema}.
@param node: A node in the associative list tree as described in
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Duke-GCB/DukeDSClient | ddsc/core/util.py | wait_for_processes | def wait_for_processes(processes, size, progress_queue, watcher, item):
"""
Watch progress queue for errors or progress.
Cleanup processes on error or success.
:param processes: [Process]: processes we are waiting to finish downloading a file
:param size: int: how many values we expect to be process... | python | def wait_for_processes(processes, size, progress_queue, watcher, item):
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Watch progress queue for errors or progress.
Cleanup processes on error or success.
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Duke-GCB/DukeDSClient | ddsc/core/util.py | verify_file_private | def verify_file_private(filename):
"""
Raises ValueError the file permissions allow group/other
On windows this never raises due to the implementation of stat.
"""
if platform.system().upper() != 'WINDOWS':
filename = os.path.expanduser(filename)
if os.path.exists(filename):
... | python | def verify_file_private(filename):
"""
Raises ValueError the file permissions allow group/other
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if platform.system().upper() != 'WINDOWS':
filename = os.path.expanduser(filename)
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Duke-GCB/DukeDSClient | ddsc/core/util.py | ProgressPrinter.transferring_item | def transferring_item(self, item, increment_amt=1):
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:param increment_amt: int amount to increase our count(how much progress have we made)
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"""
Update progress that item is about to be transferred.
:param item: LocalFile, LocalFolder, or LocalContent(project) that is about to be sent.
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Duke-GCB/DukeDSClient | ddsc/core/util.py | ProgressPrinter.finished | def finished(self):
"""
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self.progress_bar.show() | python | def finished(self):
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Duke-GCB/DukeDSClient | ddsc/core/util.py | ProgressPrinter.start_waiting | def start_waiting(self):
"""
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Only has an effect if we are in waiting state.
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wait_msg = "Waiting for project to become ready for {}".format(self.msg_verb)
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Duke-GCB/DukeDSClient | ddsc/core/util.py | ProgressPrinter.done_waiting | def done_waiting(self):
"""
Show running progress bar (only has an effect if we are in waiting state).
"""
if self.waiting:
self.waiting = False
self.progress_bar.show_running() | python | def done_waiting(self):
"""
Show running progress bar (only has an effect if we are in waiting state).
"""
if self.waiting:
self.waiting = False
self.progress_bar.show_running() | [
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Duke-GCB/DukeDSClient | ddsc/core/util.py | ProgressBar.show_waiting | def show_waiting(self, wait_msg):
"""
Show waiting progress bar until done_waiting is called.
Only has an effect if we are in waiting state.
:param wait_msg: str: message describing what we are waiting for
"""
self.wait_msg = wait_msg
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"""
Show waiting progress bar until done_waiting is called.
Only has an effect if we are in waiting state.
:param wait_msg: str: message describing what we are waiting for
"""
self.wait_msg = wait_msg
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Duke-GCB/DukeDSClient | ddsc/core/util.py | ProjectWalker._visit_content | def _visit_content(item, parent, visitor):
"""
Recursively visit nodes in the project tree.
:param item: LocalContent/LocalFolder/LocalFile we are traversing down from
:param parent: LocalContent/LocalFolder parent or None
:param visitor: object visiting the tree
"""
... | python | def _visit_content(item, parent, visitor):
"""
Recursively visit nodes in the project tree.
:param item: LocalContent/LocalFolder/LocalFile we are traversing down from
:param parent: LocalContent/LocalFolder parent or None
:param visitor: object visiting the tree
"""
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twisted/txaws | txaws/s3/client.py | s3_url_context | def s3_url_context(service_endpoint, bucket=None, object_name=None):
"""
Create a URL based on the given service endpoint and suitable for
the given bucket or object.
@param service_endpoint: The service endpoint on which to base the
resulting URL.
@type service_endpoint: L{AWSServiceEndpoi... | python | def s3_url_context(service_endpoint, bucket=None, object_name=None):
"""
Create a URL based on the given service endpoint and suitable for
the given bucket or object.
@param service_endpoint: The service endpoint on which to base the
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twisted/txaws | txaws/s3/client.py | S3Client.list_buckets | def list_buckets(self):
"""
List all buckets.
Returns a list of all the buckets owned by the authenticated sender of
the request.
"""
details = self._details(
method=b"GET",
url_context=self._url_context(),
)
query = self._query_fa... | python | def list_buckets(self):
"""
List all buckets.
Returns a list of all the buckets owned by the authenticated sender of
the request.
"""
details = self._details(
method=b"GET",
url_context=self._url_context(),
)
query = self._query_fa... | [
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twisted/txaws | txaws/s3/client.py | S3Client._parse_list_buckets | def _parse_list_buckets(self, (response, xml_bytes)):
"""
Parse XML bucket list response.
"""
root = XML(xml_bytes)
buckets = []
for bucket_data in root.find("Buckets"):
name = bucket_data.findtext("Name")
date_text = bucket_data.findtext("Creation... | python | def _parse_list_buckets(self, (response, xml_bytes)):
"""
Parse XML bucket list response.
"""
root = XML(xml_bytes)
buckets = []
for bucket_data in root.find("Buckets"):
name = bucket_data.findtext("Name")
date_text = bucket_data.findtext("Creation... | [
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twisted/txaws | txaws/s3/client.py | S3Client.create_bucket | def create_bucket(self, bucket):
"""
Create a new bucket.
"""
details = self._details(
method=b"PUT",
url_context=self._url_context(bucket=bucket),
)
query = self._query_factory(details)
return self._submit(query) | python | def create_bucket(self, bucket):
"""
Create a new bucket.
"""
details = self._details(
method=b"PUT",
url_context=self._url_context(bucket=bucket),
)
query = self._query_factory(details)
return self._submit(query) | [
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twisted/txaws | txaws/s3/client.py | S3Client.delete_bucket | def delete_bucket(self, bucket):
"""
Delete a bucket.
The bucket must be empty before it can be deleted.
"""
details = self._details(
method=b"DELETE",
url_context=self._url_context(bucket=bucket),
)
query = self._query_factory(details)
... | python | def delete_bucket(self, bucket):
"""
Delete a bucket.
The bucket must be empty before it can be deleted.
"""
details = self._details(
method=b"DELETE",
url_context=self._url_context(bucket=bucket),
)
query = self._query_factory(details)
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twisted/txaws | txaws/s3/client.py | S3Client.get_bucket | def get_bucket(self, bucket, marker=None, max_keys=None, prefix=None):
"""
Get a list of all the objects in a bucket.
@param bucket: The name of the bucket from which to retrieve objects.
@type bucket: L{unicode}
@param marker: If given, indicate a position in the overall
... | python | def get_bucket(self, bucket, marker=None, max_keys=None, prefix=None):
"""
Get a list of all the objects in a bucket.
@param bucket: The name of the bucket from which to retrieve objects.
@type bucket: L{unicode}
@param marker: If given, indicate a position in the overall
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twisted/txaws | txaws/s3/client.py | S3Client.get_bucket_location | def get_bucket_location(self, bucket):
"""
Get the location (region) of a bucket.
@param bucket: The name of the bucket.
@return: A C{Deferred} that will fire with the bucket's region.
"""
details = self._details(
method=b"GET",
url_context=self._... | python | def get_bucket_location(self, bucket):
"""
Get the location (region) of a bucket.
@param bucket: The name of the bucket.
@return: A C{Deferred} that will fire with the bucket's region.
"""
details = self._details(
method=b"GET",
url_context=self._... | [
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twisted/txaws | txaws/s3/client.py | S3Client.get_bucket_lifecycle | def get_bucket_lifecycle(self, bucket):
"""
Get the lifecycle configuration of a bucket.
@param bucket: The name of the bucket.
@return: A C{Deferred} that will fire with the bucket's lifecycle
configuration.
"""
details = self._details(
method=b"GET"... | python | def get_bucket_lifecycle(self, bucket):
"""
Get the lifecycle configuration of a bucket.
@param bucket: The name of the bucket.
@return: A C{Deferred} that will fire with the bucket's lifecycle
configuration.
"""
details = self._details(
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twisted/txaws | txaws/s3/client.py | S3Client._parse_lifecycle_config | def _parse_lifecycle_config(self, (response, xml_bytes)):
"""Parse a C{LifecycleConfiguration} XML document."""
root = XML(xml_bytes)
rules = []
for content_data in root.findall("Rule"):
id = content_data.findtext("ID")
prefix = content_data.findtext("Prefix")
... | python | def _parse_lifecycle_config(self, (response, xml_bytes)):
"""Parse a C{LifecycleConfiguration} XML document."""
root = XML(xml_bytes)
rules = []
for content_data in root.findall("Rule"):
id = content_data.findtext("ID")
prefix = content_data.findtext("Prefix")
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twisted/txaws | txaws/s3/client.py | S3Client.get_bucket_website_config | def get_bucket_website_config(self, bucket):
"""
Get the website configuration of a bucket.
@param bucket: The name of the bucket.
@return: A C{Deferred} that will fire with the bucket's website
configuration.
"""
details = self._details(
method=b"GET... | python | def get_bucket_website_config(self, bucket):
"""
Get the website configuration of a bucket.
@param bucket: The name of the bucket.
@return: A C{Deferred} that will fire with the bucket's website
configuration.
"""
details = self._details(
method=b"GET... | [
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twisted/txaws | txaws/s3/client.py | S3Client._parse_website_config | def _parse_website_config(self, (response, xml_bytes)):
"""Parse a C{WebsiteConfiguration} XML document."""
root = XML(xml_bytes)
index_suffix = root.findtext("IndexDocument/Suffix")
error_key = root.findtext("ErrorDocument/Key")
return WebsiteConfiguration(index_suffix, error_k... | python | def _parse_website_config(self, (response, xml_bytes)):
"""Parse a C{WebsiteConfiguration} XML document."""
root = XML(xml_bytes)
index_suffix = root.findtext("IndexDocument/Suffix")
error_key = root.findtext("ErrorDocument/Key")
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twisted/txaws | txaws/s3/client.py | S3Client.get_bucket_notification_config | def get_bucket_notification_config(self, bucket):
"""
Get the notification configuration of a bucket.
@param bucket: The name of the bucket.
@return: A C{Deferred} that will request the bucket's notification
configuration.
"""
details = self._details(
... | python | def get_bucket_notification_config(self, bucket):
"""
Get the notification configuration of a bucket.
@param bucket: The name of the bucket.
@return: A C{Deferred} that will request the bucket's notification
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"""
details = self._details(
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twisted/txaws | txaws/s3/client.py | S3Client._parse_notification_config | def _parse_notification_config(self, (response, xml_bytes)):
"""Parse a C{NotificationConfiguration} XML document."""
root = XML(xml_bytes)
topic = root.findtext("TopicConfiguration/Topic")
event = root.findtext("TopicConfiguration/Event")
return NotificationConfiguration(topic,... | python | def _parse_notification_config(self, (response, xml_bytes)):
"""Parse a C{NotificationConfiguration} XML document."""
root = XML(xml_bytes)
topic = root.findtext("TopicConfiguration/Topic")
event = root.findtext("TopicConfiguration/Event")
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twisted/txaws | txaws/s3/client.py | S3Client.get_bucket_versioning_config | def get_bucket_versioning_config(self, bucket):
"""
Get the versioning configuration of a bucket.
@param bucket: The name of the bucket. @return: A C{Deferred} that
will request the bucket's versioning configuration.
"""
details = self._details(
method=b"GET... | python | def get_bucket_versioning_config(self, bucket):
"""
Get the versioning configuration of a bucket.
@param bucket: The name of the bucket. @return: A C{Deferred} that
will request the bucket's versioning configuration.
"""
details = self._details(
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twisted/txaws | txaws/s3/client.py | S3Client._parse_versioning_config | def _parse_versioning_config(self, (response, xml_bytes)):
"""Parse a C{VersioningConfiguration} XML document."""
root = XML(xml_bytes)
mfa_delete = root.findtext("MfaDelete")
status = root.findtext("Status")
return VersioningConfiguration(mfa_delete=mfa_delete, status=status) | python | def _parse_versioning_config(self, (response, xml_bytes)):
"""Parse a C{VersioningConfiguration} XML document."""
root = XML(xml_bytes)
mfa_delete = root.findtext("MfaDelete")
status = root.findtext("Status")
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twisted/txaws | txaws/s3/client.py | S3Client.get_bucket_acl | def get_bucket_acl(self, bucket):
"""
Get the access control policy for a bucket.
"""
details = self._details(
method=b"GET",
url_context=self._url_context(bucket=bucket, object_name="?acl"),
)
d = self._submit(self._query_factory(details))
... | python | def get_bucket_acl(self, bucket):
"""
Get the access control policy for a bucket.
"""
details = self._details(
method=b"GET",
url_context=self._url_context(bucket=bucket, object_name="?acl"),
)
d = self._submit(self._query_factory(details))
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twisted/txaws | txaws/s3/client.py | S3Client.put_object | def put_object(self, bucket, object_name, data=None, content_type=None,
metadata={}, amz_headers={}, body_producer=None):
"""
Put an object in a bucket.
An existing object with the same name will be replaced.
@param bucket: The name of the bucket.
@param obje... | python | def put_object(self, bucket, object_name, data=None, content_type=None,
metadata={}, amz_headers={}, body_producer=None):
"""
Put an object in a bucket.
An existing object with the same name will be replaced.
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twisted/txaws | txaws/s3/client.py | S3Client.copy_object | def copy_object(self, source_bucket, source_object_name, dest_bucket=None,
dest_object_name=None, metadata={}, amz_headers={}):
"""
Copy an object stored in S3 from a source bucket to a destination
bucket.
@param source_bucket: The S3 bucket to copy the object from.
... | python | def copy_object(self, source_bucket, source_object_name, dest_bucket=None,
dest_object_name=None, metadata={}, amz_headers={}):
"""
Copy an object stored in S3 from a source bucket to a destination
bucket.
@param source_bucket: The S3 bucket to copy the object from.
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twisted/txaws | txaws/s3/client.py | S3Client.get_object | def get_object(self, bucket, object_name):
"""
Get an object from a bucket.
"""
details = self._details(
method=b"GET",
url_context=self._url_context(bucket=bucket, object_name=object_name),
)
d = self._submit(self._query_factory(details))
... | python | def get_object(self, bucket, object_name):
"""
Get an object from a bucket.
"""
details = self._details(
method=b"GET",
url_context=self._url_context(bucket=bucket, object_name=object_name),
)
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twisted/txaws | txaws/s3/client.py | S3Client.head_object | def head_object(self, bucket, object_name):
"""
Retrieve object metadata only.
"""
details = self._details(
method=b"HEAD",
url_context=self._url_context(bucket=bucket, object_name=object_name),
)
d = self._submit(self._query_factory(details))
... | python | def head_object(self, bucket, object_name):
"""
Retrieve object metadata only.
"""
details = self._details(
method=b"HEAD",
url_context=self._url_context(bucket=bucket, object_name=object_name),
)
d = self._submit(self._query_factory(details))
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twisted/txaws | txaws/s3/client.py | S3Client.delete_object | def delete_object(self, bucket, object_name):
"""
Delete an object from a bucket.
Once deleted, there is no method to restore or undelete an object.
"""
details = self._details(
method=b"DELETE",
url_context=self._url_context(bucket=bucket, object_name=ob... | python | def delete_object(self, bucket, object_name):
"""
Delete an object from a bucket.
Once deleted, there is no method to restore or undelete an object.
"""
details = self._details(
method=b"DELETE",
url_context=self._url_context(bucket=bucket, object_name=ob... | [
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twisted/txaws | txaws/s3/client.py | S3Client.put_object_acl | def put_object_acl(self, bucket, object_name, access_control_policy):
"""
Set access control policy on an object.
"""
data = access_control_policy.to_xml()
details = self._details(
method=b"PUT",
url_context=self._url_context(
bucket=bucket... | python | def put_object_acl(self, bucket, object_name, access_control_policy):
"""
Set access control policy on an object.
"""
data = access_control_policy.to_xml()
details = self._details(
method=b"PUT",
url_context=self._url_context(
bucket=bucket... | [
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twisted/txaws | txaws/s3/client.py | S3Client.put_request_payment | def put_request_payment(self, bucket, payer):
"""
Set request payment configuration on bucket to payer.
@param bucket: The name of the bucket.
@param payer: The name of the payer.
@return: A C{Deferred} that will fire with the result of the request.
"""
data = Re... | python | def put_request_payment(self, bucket, payer):
"""
Set request payment configuration on bucket to payer.
@param bucket: The name of the bucket.
@param payer: The name of the payer.
@return: A C{Deferred} that will fire with the result of the request.
"""
data = Re... | [
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twisted/txaws | txaws/s3/client.py | S3Client.get_request_payment | def get_request_payment(self, bucket):
"""
Get the request payment configuration on a bucket.
@param bucket: The name of the bucket.
@return: A C{Deferred} that will fire with the name of the payer.
"""
details = self._details(
method=b"GET",
url_... | python | def get_request_payment(self, bucket):
"""
Get the request payment configuration on a bucket.
@param bucket: The name of the bucket.
@return: A C{Deferred} that will fire with the name of the payer.
"""
details = self._details(
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twisted/txaws | txaws/s3/client.py | S3Client.init_multipart_upload | def init_multipart_upload(self, bucket, object_name, content_type=None,
amz_headers={}, metadata={}):
"""
Initiate a multipart upload to a bucket.
@param bucket: The name of the bucket
@param object_name: The object name
@param content_type: The Con... | python | def init_multipart_upload(self, bucket, object_name, content_type=None,
amz_headers={}, metadata={}):
"""
Initiate a multipart upload to a bucket.
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twisted/txaws | txaws/s3/client.py | S3Client.upload_part | def upload_part(self, bucket, object_name, upload_id, part_number,
data=None, content_type=None, metadata={},
body_producer=None):
"""
Upload a part of data corresponding to a multipart upload.
@param bucket: The bucket name
@param object_name: Th... | python | def upload_part(self, bucket, object_name, upload_id, part_number,
data=None, content_type=None, metadata={},
body_producer=None):
"""
Upload a part of data corresponding to a multipart upload.
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twisted/txaws | txaws/s3/client.py | S3Client.complete_multipart_upload | def complete_multipart_upload(self, bucket, object_name, upload_id,
parts_list, content_type=None, metadata={}):
"""
Complete a multipart upload.
N.B. This can be possibly be a slow operation.
@param bucket: The bucket name
@param object_name: ... | python | def complete_multipart_upload(self, bucket, object_name, upload_id,
parts_list, content_type=None, metadata={}):
"""
Complete a multipart upload.
N.B. This can be possibly be a slow operation.
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twisted/txaws | txaws/s3/client.py | Query.set_content_type | def set_content_type(self):
"""
Set the content type based on the file extension used in the object
name.
"""
if self.object_name and not self.content_type:
# XXX nothing is currently done with the encoding... we may
# need to in the future
sel... | python | def set_content_type(self):
"""
Set the content type based on the file extension used in the object
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if self.object_name and not self.content_type:
# XXX nothing is currently done with the encoding... we may
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twisted/txaws | txaws/s3/client.py | Query.get_headers | def get_headers(self, instant):
"""
Build the list of headers needed in order to perform S3 operations.
"""
headers = {'x-amz-date': _auth_v4.makeAMZDate(instant)}
if self.body_producer is None:
data = self.data
if data is None:
data = b""
... | python | def get_headers(self, instant):
"""
Build the list of headers needed in order to perform S3 operations.
"""
headers = {'x-amz-date': _auth_v4.makeAMZDate(instant)}
if self.body_producer is None:
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twisted/txaws | txaws/s3/client.py | Query.sign | def sign(self, headers, data, url_context, instant, method,
region=REGION_US_EAST_1):
"""Sign this query using its built in credentials."""
headers["host"] = url_context.get_encoded_host()
if data is None:
request = _auth_v4._CanonicalRequest.from_request_components(
... | python | def sign(self, headers, data, url_context, instant, method,
region=REGION_US_EAST_1):
"""Sign this query using its built in credentials."""
headers["host"] = url_context.get_encoded_host()
if data is None:
request = _auth_v4._CanonicalRequest.from_request_components(
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twisted/txaws | txaws/s3/client.py | Query.submit | def submit(self, url_context=None, utcnow=datetime.datetime.utcnow):
"""Submit this query.
@return: A deferred from get_page
"""
if not url_context:
url_context = s3_url_context(
self.endpoint, self.bucket, self.object_name)
d = self.get_page(
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"""Submit this query.
@return: A deferred from get_page
"""
if not url_context:
url_context = s3_url_context(
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UUDigitalHumanitieslab/tei_reader | tei_reader/models/element.py | Element.attributes | def attributes(self):
if 'id' in self.node.attrib:
yield PlaceholderAttribute('id', self.node.attrib['id'])
if 'tei-tag' in self.node.attrib:
yield PlaceholderAttribute('tei-tag', self.node.attrib['tei-tag'])
"""Contain attributes applicable to this element"""
f... | python | def attributes(self):
if 'id' in self.node.attrib:
yield PlaceholderAttribute('id', self.node.attrib['id'])
if 'tei-tag' in self.node.attrib:
yield PlaceholderAttribute('tei-tag', self.node.attrib['tei-tag'])
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UUDigitalHumanitieslab/tei_reader | tei_reader/models/element.py | Element.divisions | def divisions(self):
"""
Recursively get all the text divisions directly part of this element. If an element contains parts or text without tag. Those will be returned in order and wrapped with a TextDivision.
"""
from .placeholder_division import PlaceholderDivision
pl... | python | def divisions(self):
"""
Recursively get all the text divisions directly part of this element. If an element contains parts or text without tag. Those will be returned in order and wrapped with a TextDivision.
"""
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UUDigitalHumanitieslab/tei_reader | tei_reader/models/element.py | Element.all_parts | def all_parts(self):
"""
Recursively get the parts flattened and in document order constituting the entire text e.g. if something has emphasis, a footnote or is marked as foreign. Text without a container element will be returned in order and wrapped with a TextPart.
"""
for item in sel... | python | def all_parts(self):
"""
Recursively get the parts flattened and in document order constituting the entire text e.g. if something has emphasis, a footnote or is marked as foreign. Text without a container element will be returned in order and wrapped with a TextPart.
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UUDigitalHumanitieslab/tei_reader | tei_reader/models/element.py | Element.parts | def parts(self):
"""
Get the parts directly below this element.
"""
for item in self.__parts_and_divisions:
if item.tag == 'part':
yield item
else:
# Divisions shouldn't be beneath a part, but here's a fallback
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"""
Get the parts directly below this element.
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for item in self.__parts_and_divisions:
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yield item
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UUDigitalHumanitieslab/tei_reader | tei_reader/models/element.py | Element.__parts_and_divisions | def __parts_and_divisions(self):
"""
The parts and divisions directly part of this element.
"""
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text = self.node.text
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"""
The parts and divisions directly part of this element.
"""
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UUDigitalHumanitieslab/tei_reader | tei_reader/models/element.py | Element.tostring | def tostring(self, inject):
"""
Convert an element to a single string and allow the passed inject method to place content before any
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"""
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pdkit/pdkit | pdkit/models.py | RCL | def RCL(input_shape,
rec_conv_layers,
dense_layers,
output_layer=[1, 'sigmoid'],
padding='same',
optimizer='adam',
loss='binary_crossentropy'):
"""Summary
Args:
input_shape (tuple): The shape of the input layer.
output_nodes (int): Number of... | python | def RCL(input_shape,
rec_conv_layers,
dense_layers,
output_layer=[1, 'sigmoid'],
padding='same',
optimizer='adam',
loss='binary_crossentropy'):
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pdkit/pdkit | pdkit/models.py | VOICE | def VOICE(input_shape,
conv_layers,
dense_layers,
output_layer=[1, 'sigmoid'],
padding='same',
optimizer='adam',
loss='binary_crossentropy'):
"""Conv1D CNN used primarily for voice data.
Args:
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conv_layers,
dense_layers,
output_layer=[1, 'sigmoid'],
padding='same',
optimizer='adam',
loss='binary_crossentropy'):
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pdkit/pdkit | pdkit/models.py | DNN | def DNN(input_shape,
dense_layers,
output_layer=[1, 'sigmoid'],
optimizer='adam',
loss='binary_crossentropy'):
"""Summary
Args:
input_shape (list): The shape of the input layer
targets (int): Number of targets
dense_layers (list): Dense la... | python | def DNN(input_shape,
dense_layers,
output_layer=[1, 'sigmoid'],
optimizer='adam',
loss='binary_crossentropy'):
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targets (int): Number of targets
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T-002/pycast | pycast/errors/baseerrormeasure.py | BaseErrorMeasure.initialize | def initialize(self, originalTimeSeries, calculatedTimeSeries):
"""Initializes the ErrorMeasure.
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:param TimeSeries originalTimeSeries: TimeSeries containing the original data.
:param TimeSeries calcu... | python | def initialize(self, originalTimeSeries, calculatedTimeSeries):
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T-002/pycast | pycast/errors/baseerrormeasure.py | BaseErrorMeasure._get_error_values | def _get_error_values(self, startingPercentage, endPercentage, startDate, endDate):
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Both parameters will be correct at this time.
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T-002/pycast | pycast/errors/baseerrormeasure.py | BaseErrorMeasure.get_error | def get_error(self, startingPercentage=0.0, endPercentage=100.0, startDate=None, endDate=None):
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T-002/pycast | pycast/errors/baseerrormeasure.py | BaseErrorMeasure.confidence_interval | def confidence_interval(self, confidenceLevel):
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smaller than the returned value for overestimations and larger than
the returned va... | python | def confidence_interval(self, confidenceLevel):
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pdkit/pdkit | pdkit/utils.py | load_cloudupdrs_data | def load_cloudupdrs_data(filename, convert_times=1000000000.0):
"""
This method loads data in the cloudupdrs format
Usually the data will be saved in a csv file and it should look like this:
.. code-block:: json
timestamp_0, x_0, y_0, z_0
timestamp_1, x_1... | python | def load_cloudupdrs_data(filename, convert_times=1000000000.0):
"""
This method loads data in the cloudupdrs format
Usually the data will be saved in a csv file and it should look like this:
.. code-block:: json
timestamp_0, x_0, y_0, z_0
timestamp_1, x_1... | [
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pdkit/pdkit | pdkit/utils.py | load_segmented_data | def load_segmented_data(filename):
"""
Helper function to load segmented gait time series data.
:param filename: The full path of the file that contais our data. This should be a comma separated value (csv file).
:type filename: str
:return: The gait time series segmented data, wit... | python | def load_segmented_data(filename):
"""
Helper function to load segmented gait time series data.
:param filename: The full path of the file that contais our data. This should be a comma separated value (csv file).
:type filename: str
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pdkit/pdkit | pdkit/utils.py | load_mpower_data | def load_mpower_data(filename, convert_times=1000000000.0):
"""
This method loads data in the `mpower <https://www.synapse.org/#!Synapse:syn4993293/wiki/247859>`_ format
The format is like:
.. code-block:: json
[
{
"timestamp":... | python | def load_mpower_data(filename, convert_times=1000000000.0):
"""
This method loads data in the `mpower <https://www.synapse.org/#!Synapse:syn4993293/wiki/247859>`_ format
The format is like:
.. code-block:: json
[
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pdkit/pdkit | pdkit/utils.py | load_finger_tapping_cloudupdrs_data | def load_finger_tapping_cloudupdrs_data(filename, convert_times=1000.0):
"""
This method loads data in the cloudupdrs format for the finger tapping processor
Usually the data will be saved in a csv file and it should look like this:
.. code-block:: json
timestamp_0, . , action_ty... | python | def load_finger_tapping_cloudupdrs_data(filename, convert_times=1000.0):
"""
This method loads data in the cloudupdrs format for the finger tapping processor
Usually the data will be saved in a csv file and it should look like this:
.. code-block:: json
timestamp_0, . , action_ty... | [
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Usually the data will be saved in a csv file and it should look like this:
.. code-block:: json
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pdkit/pdkit | pdkit/utils.py | load_finger_tapping_mpower_data | def load_finger_tapping_mpower_data(filename, button_left_rect, button_right_rect, convert_times=1000.0):
"""
This method loads data in the `mpower <https://www.synapse.org/#!Synapse:syn4993293/wiki/247859>`_ format
"""
raw_data = pd.read_json(filename)
date_times = pd.to_datetime(raw_data.TapTi... | python | def load_finger_tapping_mpower_data(filename, button_left_rect, button_right_rect, convert_times=1000.0):
"""
This method loads data in the `mpower <https://www.synapse.org/#!Synapse:syn4993293/wiki/247859>`_ format
"""
raw_data = pd.read_json(filename)
date_times = pd.to_datetime(raw_data.TapTi... | [
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pdkit/pdkit | pdkit/utils.py | load_data | def load_data(filename, format_file='cloudupdrs', button_left_rect=None, button_right_rect=None):
"""
This is a general load data method where the format of data to load can be passed as a parameter,
:param filename: The path to load data from
:type filename: str
:param format_file:... | python | def load_data(filename, format_file='cloudupdrs', button_left_rect=None, button_right_rect=None):
"""
This is a general load data method where the format of data to load can be passed as a parameter,
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pdkit/pdkit | pdkit/utils.py | numerical_integration | def numerical_integration(signal, sampling_frequency):
"""
Numerically integrate a signal with it's sampling frequency.
:param signal: A 1-dimensional array or list (the signal).
:type signal: array
:param sampling_frequency: The sampling frequency for the signal.
:type samp... | python | def numerical_integration(signal, sampling_frequency):
"""
Numerically integrate a signal with it's sampling frequency.
:param signal: A 1-dimensional array or list (the signal).
:type signal: array
:param sampling_frequency: The sampling frequency for the signal.
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pdkit/pdkit | pdkit/utils.py | autocorrelation | def autocorrelation(signal):
"""
The `correlation <https://en.wikipedia.org/wiki/Autocorrelation#Estimation>`_ of a signal with a delayed copy of itself.
:param signal: A 1-dimensional array or list (the signal).
:type signal: array
:return: The autocorrelated signal.
:rtyp... | python | def autocorrelation(signal):
"""
The `correlation <https://en.wikipedia.org/wiki/Autocorrelation#Estimation>`_ of a signal with a delayed copy of itself.
:param signal: A 1-dimensional array or list (the signal).
:type signal: array
:return: The autocorrelated signal.
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pdkit/pdkit | pdkit/utils.py | peakdet | def peakdet(signal, delta, x=None):
"""
Find the local maxima and minima (peaks) in a 1-dimensional signal.
Converted from MATLAB script <http://billauer.co.il/peakdet.html>
:param array signal: A 1-dimensional array or list (the signal).
:type signal: array
:param delta: Th... | python | def peakdet(signal, delta, x=None):
"""
Find the local maxima and minima (peaks) in a 1-dimensional signal.
Converted from MATLAB script <http://billauer.co.il/peakdet.html>
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pdkit/pdkit | pdkit/utils.py | compute_interpeak | def compute_interpeak(data, sample_rate):
"""
Compute number of samples between signal peaks using the real part of FFT.
:param data: 1-dimensional time series data.
:type data: array
:param sample_rate: Sample rate of accelerometer reading (Hz)
:type sample_rate: float
... | python | def compute_interpeak(data, sample_rate):
"""
Compute number of samples between signal peaks using the real part of FFT.
:param data: 1-dimensional time series data.
:type data: array
:param sample_rate: Sample rate of accelerometer reading (Hz)
:type sample_rate: float
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pdkit/pdkit | pdkit/utils.py | butter_lowpass_filter | def butter_lowpass_filter(data, sample_rate, cutoff=10, order=4, plot=False):
"""
`Low-pass filter <http://stackoverflow.com/questions/25191620/
creating-lowpass-filter-in-scipy-understanding-methods-and-units>`_ data by the [order]th order zero lag Butterworth filter
whose cut frequency is ... | python | def butter_lowpass_filter(data, sample_rate, cutoff=10, order=4, plot=False):
"""
`Low-pass filter <http://stackoverflow.com/questions/25191620/
creating-lowpass-filter-in-scipy-understanding-methods-and-units>`_ data by the [order]th order zero lag Butterworth filter
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pdkit/pdkit | pdkit/utils.py | crossings_nonzero_pos2neg | def crossings_nonzero_pos2neg(data):
"""
Find `indices of zero crossings from positive to negative values <http://stackoverflow.com/questions/3843017/efficiently-detect-sign-changes-in-python>`_.
:param data: numpy array of floats
:type data: numpy array of floats
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"""
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pdkit/pdkit | pdkit/utils.py | autocorrelate | def autocorrelate(data, unbias=2, normalize=2):
"""
Compute the autocorrelation coefficients for time series data.
Here we use scipy.signal.correlate, but the results are the same as in
Yang, et al., 2012 for unbias=1:
"The autocorrelation coefficient refers to the correlation of a... | python | def autocorrelate(data, unbias=2, normalize=2):
"""
Compute the autocorrelation coefficients for time series data.
Here we use scipy.signal.correlate, but the results are the same as in
Yang, et al., 2012 for unbias=1:
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pdkit/pdkit | pdkit/utils.py | get_signal_peaks_and_prominences | def get_signal_peaks_and_prominences(data):
""" Get the signal peaks and peak prominences.
:param data array: One-dimensional array.
:return peaks array: The peaks of our signal.
:return prominences array: The prominences of the peaks.
"""
peaks, _ = sig.find_peaks(... | python | def get_signal_peaks_and_prominences(data):
""" Get the signal peaks and peak prominences.
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:param 1d-array peaks: Peaks of the data.
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pdkit/pdkit | pdkit/utils.py | non_zero_index | def non_zero_index(arr):
"""
Raises:
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>>> arr = array([])
>>> non_zero_index(arr)
1. Array with zero values raises.
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... | python | def non_zero_index(arr):
"""
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ValueError: If no-non-zero rows can be found.
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pdkit/pdkit | pdkit/utils.py | window_features | def window_features(idx, window_size=100, overlap=10):
""" Generate indexes for a sliding window with overlap
:param array idx: The indexes that need to be windowed.
:param int window_size: The size of the window.
:param int overlap: How much should each window overlap.
... | python | def window_features(idx, window_size=100, overlap=10):
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Duke-GCB/DukeDSClient | ddsc/versioncheck.py | get_pypi_version | def get_pypi_version():
"""
Returns the version info from pypi for this app.
"""
try:
response = requests.get(PYPI_URL, timeout=HALF_SECOND_TIMEOUT)
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"""
Returns the version info from pypi for this app.
"""
try:
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Duke-GCB/DukeDSClient | ddsc/sdk/client.py | DDSConnection.get_project_by_id | def get_project_by_id(self, project_id):
"""
Get details about project with the specified uuid
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... | python | def get_project_by_id(self, project_id):
"""
Get details about project with the specified uuid
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:return: Project
"""
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Duke-GCB/DukeDSClient | ddsc/sdk/client.py | DDSConnection.create_project | def create_project(self, name, description):
"""
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:param name: str: name of the project to create
:param description: str: description of the project to create
:return: Project
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Duke-GCB/DukeDSClient | ddsc/sdk/client.py | DDSConnection.get_project_children | def get_project_children(self, project_id, name_contains=None):
"""
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:param project_id: str: uuid of the project to list contents
:param name_contains: str: filter children based on a pattern
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"""
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Duke-GCB/DukeDSClient | ddsc/sdk/client.py | DDSConnection.get_folder_children | def get_folder_children(self, folder_id, name_contains=None):
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:param name_contains: str: filter children based on a pattern
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Duke-GCB/DukeDSClient | ddsc/sdk/client.py | DDSConnection.get_file_download | def get_file_download(self, file_id):
"""
Get a file download object that contains temporary url settings needed to download the contents of a file.
:param file_id: str: uuid of the file
:return: FileDownload
"""
return self._create_item_response(
self.data_se... | python | def get_file_download(self, file_id):
"""
Get a file download object that contains temporary url settings needed to download the contents of a file.
:param file_id: str: uuid of the file
:return: FileDownload
"""
return self._create_item_response(
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Duke-GCB/DukeDSClient | ddsc/sdk/client.py | DDSConnection.upload_file | def upload_file(self, local_path, project_id, parent_data, existing_file_id=None, remote_filename=None):
"""
Upload a file under a specific location in DDSConnection possibly replacing an existing file.
:param local_path: str: path to a local file to upload
:param project_id: str: uuid o... | python | def upload_file(self, local_path, project_id, parent_data, existing_file_id=None, remote_filename=None):
"""
Upload a file under a specific location in DDSConnection possibly replacing an existing file.
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Duke-GCB/DukeDSClient | ddsc/sdk/client.py | DDSConnection._folder_or_file_constructor | def _folder_or_file_constructor(dds_connection, data_dict):
"""
Create a File or Folder based on the kind value in data_dict
:param dds_connection: DDSConnection
:param data_dict: dict: payload received from DDSConnection API
:return: File|Folder
"""
kind = data_d... | python | def _folder_or_file_constructor(dds_connection, data_dict):
"""
Create a File or Folder based on the kind value in data_dict
:param dds_connection: DDSConnection
:param data_dict: dict: payload received from DDSConnection API
:return: File|Folder
"""
kind = data_d... | [
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Duke-GCB/DukeDSClient | ddsc/sdk/client.py | DDSConnection.get_folder_by_id | def get_folder_by_id(self, folder_id):
"""
Get folder details for a folder id.
:param folder_id: str: uuid of the folder
:return: Folder
"""
return self._create_item_response(
self.data_service.get_folder(folder_id),
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) | python | def get_folder_by_id(self, folder_id):
"""
Get folder details for a folder id.
:param folder_id: str: uuid of the folder
:return: Folder
"""
return self._create_item_response(
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Duke-GCB/DukeDSClient | ddsc/sdk/client.py | DDSConnection.get_file_by_id | def get_file_by_id(self, file_id):
"""
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:param file_id: str: uuid of the file
:return: File
"""
return self._create_item_response(
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"""
Get folder details for a file id.
:param file_id: str: uuid of the file
:return: File
"""
return self._create_item_response(
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Duke-GCB/DukeDSClient | ddsc/sdk/client.py | FileDownload.save_to_path | def save_to_path(self, file_path, chunk_size=DOWNLOAD_FILE_CHUNK_SIZE):
"""
Save the contents of the remote file to a local path.
:param file_path: str: file path
:param chunk_size: chunk size used to write local file
"""
response = self._get_download_response()
w... | python | def save_to_path(self, file_path, chunk_size=DOWNLOAD_FILE_CHUNK_SIZE):
"""
Save the contents of the remote file to a local path.
:param file_path: str: file path
:param chunk_size: chunk size used to write local file
"""
response = self._get_download_response()
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Duke-GCB/DukeDSClient | ddsc/sdk/client.py | ChildFinder.get_child | def get_child(self):
"""
Find file or folder at the remote_path
:return: File|Folder
"""
path_parts = self.remote_path.split(os.sep)
return self._get_child_recurse(path_parts, self.node) | python | def get_child(self):
"""
Find file or folder at the remote_path
:return: File|Folder
"""
path_parts = self.remote_path.split(os.sep)
return self._get_child_recurse(path_parts, self.node) | [
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Duke-GCB/DukeDSClient | ddsc/core/parallel.py | execute_task_async | def execute_task_async(task_func, task_id, context):
"""
Global function run for Task. multiprocessing requires a top level function.
:param task_func: function: function to run (must be pickle-able)
:param task_id: int: unique id of this task
:param context: object: single argument to task_func (mu... | python | def execute_task_async(task_func, task_id, context):
"""
Global function run for Task. multiprocessing requires a top level function.
:param task_func: function: function to run (must be pickle-able)
:param task_id: int: unique id of this task
:param context: object: single argument to task_func (mu... | [
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:param task_id: int: unique id of this task
:param context: object: single argument to task_func (must be pickle-able)
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Duke-GCB/DukeDSClient | ddsc/core/parallel.py | WaitingTaskList.add | def add(self, task):
"""
Add this task to the lookup based on it's wait_for_task_id property.
:param task: Task: task to add to the list
"""
wait_id = task.wait_for_task_id
task_list = self.wait_id_to_task.get(wait_id, [])
task_list.append(task)
self.wait_... | python | def add(self, task):
"""
Add this task to the lookup based on it's wait_for_task_id property.
:param task: Task: task to add to the list
"""
wait_id = task.wait_for_task_id
task_list = self.wait_id_to_task.get(wait_id, [])
task_list.append(task)
self.wait_... | [
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Duke-GCB/DukeDSClient | ddsc/core/parallel.py | TaskRunner.add | def add(self, parent_task_id, command):
"""
Create a task for the command that will wait for parent_task_id before starting.
:param parent_task_id: int: id of task to wait for or None if it can start immediately
:param command: TaskCommand: contains data function to run
:return: ... | python | def add(self, parent_task_id, command):
"""
Create a task for the command that will wait for parent_task_id before starting.
:param parent_task_id: int: id of task to wait for or None if it can start immediately
:param command: TaskCommand: contains data function to run
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Duke-GCB/DukeDSClient | ddsc/core/parallel.py | TaskRunner.run | def run(self):
"""
Runs all tasks in this runner on the executor.
Blocks until all tasks have been completed.
:return:
"""
for task in self.get_next_tasks(None):
self.executor.add_task(task, None)
while not self.executor.is_done():
done_tas... | python | def run(self):
"""
Runs all tasks in this runner on the executor.
Blocks until all tasks have been completed.
:return:
"""
for task in self.get_next_tasks(None):
self.executor.add_task(task, None)
while not self.executor.is_done():
done_tas... | [
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