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Sean1708/HipPy
hippy/parser.py
Parser._parse_comma_list
def _parse_comma_list(self): """Parse a comma seperated list.""" if self._cur_token['type'] not in self._literals: raise Exception( "Parser failed, _parse_comma_list was called on non-literal" " {} on line {}.".format( repr(self._cur_token[...
python
def _parse_comma_list(self): """Parse a comma seperated list.""" if self._cur_token['type'] not in self._literals: raise Exception( "Parser failed, _parse_comma_list was called on non-literal" " {} on line {}.".format( repr(self._cur_token[...
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Parse a comma seperated list.
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train
https://github.com/Sean1708/HipPy/blob/d0ea8fb1e417f1fedaa8e215e3d420b90c4de691/hippy/parser.py#L239-L263
Sean1708/HipPy
hippy/parser.py
Parser._parse_newline_list
def _parse_newline_list(self, indent): """Parse a newline seperated list.""" if self._cur_token['type'] not in self._literals: raise Exception( "Parser failed, _parse_newline_list was called on non-literal" " {} on line {}.".format( repr(se...
python
def _parse_newline_list(self, indent): """Parse a newline seperated list.""" if self._cur_token['type'] not in self._literals: raise Exception( "Parser failed, _parse_newline_list was called on non-literal" " {} on line {}.".format( repr(se...
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Parse a newline seperated list.
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https://github.com/Sean1708/HipPy/blob/d0ea8fb1e417f1fedaa8e215e3d420b90c4de691/hippy/parser.py#L265-L330
xtrementl/focus
focus/environment/cli.py
FocusArgParser.exit
def exit(self, status=0, message=None): """ Handle general message exits (e.g. version). """ if message: raise HelpBanner(message.strip(), code=status)
python
def exit(self, status=0, message=None): """ Handle general message exits (e.g. version). """ if message: raise HelpBanner(message.strip(), code=status)
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Handle general message exits (e.g. version).
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xtrementl/focus
focus/environment/cli.py
FocusArgParser.format_help
def format_help(self): """ Strip out { } redundant subcommand section. """ help_msg = super(FocusArgParser, self).format_help() return re.sub(r'\{.+\}', '', help_msg)
python
def format_help(self): """ Strip out { } redundant subcommand section. """ help_msg = super(FocusArgParser, self).format_help() return re.sub(r'\{.+\}', '', help_msg)
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Strip out { } redundant subcommand section.
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train
https://github.com/xtrementl/focus/blob/cbbbc0b49a7409f9e0dc899de5b7e057f50838e4/focus/environment/cli.py#L37-L41
xtrementl/focus
focus/environment/cli.py
CLI._handle_help
def _handle_help(self, env, args): """ Handles showing help information for arguments provided. `env` Runtime ``Environment`` instance. `args` List of argument strings passed. Returns ``False`` if nothing handled. * Raises ``Help...
python
def _handle_help(self, env, args): """ Handles showing help information for arguments provided. `env` Runtime ``Environment`` instance. `args` List of argument strings passed. Returns ``False`` if nothing handled. * Raises ``Help...
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train
https://github.com/xtrementl/focus/blob/cbbbc0b49a7409f9e0dc899de5b7e057f50838e4/focus/environment/cli.py#L59-L82
xtrementl/focus
focus/environment/cli.py
CLI._handle_command
def _handle_command(self, command, env, args): """ Handles calling appropriate command plugin based on the arguments provided. `command` Command string. `env` Runtime ``Environment`` instance. `args` List of argumen...
python
def _handle_command(self, command, env, args): """ Handles calling appropriate command plugin based on the arguments provided. `command` Command string. `env` Runtime ``Environment`` instance. `args` List of argumen...
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xtrementl/focus
focus/environment/cli.py
CLI._get_parser
def _get_parser(self, env): """ Creates base argument parser. `env` Runtime ``Environment`` instance. * Raises ``HelpBanner`` exception when certain conditions apply. Returns ``FocusArgumentParser`` object. """ version_str = 'focus vers...
python
def _get_parser(self, env): """ Creates base argument parser. `env` Runtime ``Environment`` instance. * Raises ``HelpBanner`` exception when certain conditions apply. Returns ``FocusArgumentParser`` object. """ version_str = 'focus vers...
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train
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xtrementl/focus
focus/environment/cli.py
CLI._get_plugin_parser
def _get_plugin_parser(self, plugin_obj): """ Creates a plugin argument parser. `plugin_obj` ``Plugin`` object. Returns ``FocusArgParser`` object. """ prog_name = 'focus ' + plugin_obj.command desc = (plugin_obj.__doc__ or '').strip() ...
python
def _get_plugin_parser(self, plugin_obj): """ Creates a plugin argument parser. `plugin_obj` ``Plugin`` object. Returns ``FocusArgParser`` object. """ prog_name = 'focus ' + plugin_obj.command desc = (plugin_obj.__doc__ or '').strip() ...
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train
https://github.com/xtrementl/focus/blob/cbbbc0b49a7409f9e0dc899de5b7e057f50838e4/focus/environment/cli.py#L194-L209
xtrementl/focus
focus/environment/cli.py
CLI.execute
def execute(self, env): """ Executes basic flags and command plugins. `env` Runtime ``Environment`` instance. * Raises ``FocusError`` exception when certain conditions apply. """ # parse args parser = self._get_parser(env) parsed_arg...
python
def execute(self, env): """ Executes basic flags and command plugins. `env` Runtime ``Environment`` instance. * Raises ``FocusError`` exception when certain conditions apply. """ # parse args parser = self._get_parser(env) parsed_arg...
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mbarakaja/braulio
braulio/files.py
_split_chglog
def _split_chglog(path, title): """Split a RST file text in two parts. The title argument determine the split point. The given title goes in the bottom part. If the title is not found everything goes in the top part. Return a tuple with the top and bottom parts. """ with path.open() as f: ...
python
def _split_chglog(path, title): """Split a RST file text in two parts. The title argument determine the split point. The given title goes in the bottom part. If the title is not found everything goes in the top part. Return a tuple with the top and bottom parts. """ with path.open() as f: ...
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Split a RST file text in two parts. The title argument determine the split point. The given title goes in the bottom part. If the title is not found everything goes in the top part. Return a tuple with the top and bottom parts.
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smartmob-project/procfile
procfile/__init__.py
loads
def loads(content): """Load a Procfile from a string.""" lines = _group_lines(line for line in content.split('\n')) lines = [ (i, _parse_procfile_line(line)) for i, line in lines if line.strip() ] errors = [] # Reject files with duplicate process types (no sane default). dupl...
python
def loads(content): """Load a Procfile from a string.""" lines = _group_lines(line for line in content.split('\n')) lines = [ (i, _parse_procfile_line(line)) for i, line in lines if line.strip() ] errors = [] # Reject files with duplicate process types (no sane default). dupl...
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Load a Procfile from a string.
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train
https://github.com/smartmob-project/procfile/blob/338756d5b645f17aa2366c34afa3b7a58d880796/procfile/__init__.py#L70-L99
fred49/linshare-api
linshareapi/user/authentication.py
Authentication.update
def update(self, data): """ Update a list.""" # if self.debug >= 2: # self.debug(data) url = "{base}/change_password".format( base=self.local_base_url ) self._check(data) res = self.core.create(url, data) self.log.debug("result: %s", res) ...
python
def update(self, data): """ Update a list.""" # if self.debug >= 2: # self.debug(data) url = "{base}/change_password".format( base=self.local_base_url ) self._check(data) res = self.core.create(url, data) self.log.debug("result: %s", res) ...
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Update a list.
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OpenVolunteeringPlatform/django-ovp-core
ovp_core/helpers/__init__.py
is_email_enabled
def is_email_enabled(email): """ Emails are activated by default. Returns false if an email has been disabled in settings.py """ s = get_settings(string="OVP_EMAILS") email_settings = s.get(email, {}) enabled = True if email_settings.get("disabled", False): enabled = False return enabled
python
def is_email_enabled(email): """ Emails are activated by default. Returns false if an email has been disabled in settings.py """ s = get_settings(string="OVP_EMAILS") email_settings = s.get(email, {}) enabled = True if email_settings.get("disabled", False): enabled = False return enabled
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OpenVolunteeringPlatform/django-ovp-core
ovp_core/helpers/__init__.py
get_email_subject
def get_email_subject(email, default): """ Allows for email subject overriding from settings.py """ s = get_settings(string="OVP_EMAILS") email_settings = s.get(email, {}) title = email_settings.get("subject", default) return _(title)
python
def get_email_subject(email, default): """ Allows for email subject overriding from settings.py """ s = get_settings(string="OVP_EMAILS") email_settings = s.get(email, {}) title = email_settings.get("subject", default) return _(title)
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AKSW/SemanticPingbackPy
semanticpingback.py
SemanticPingbackReceiver._load
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python
def _load(self, graph, source): """from https://rdflib.readthedocs.io/en/stable/_modules/rdflib/plugins/sparql/sparql.html""" try: return graph.load(source) except: pass try: return graph.load(source, format='n3') except: pass ...
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from https://rdflib.readthedocs.io/en/stable/_modules/rdflib/plugins/sparql/sparql.html
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AguaClara/aide_document-DEPRECATED
aide_document/convert.py
md_to_pdf
def md_to_pdf(input_name, output_name): """ Converts an input MarkDown file to a PDF of the given output name. Parameters ========== input_name : String Relative file location of the input file to where this function is being called. output_name : String Relative file location of the o...
python
def md_to_pdf(input_name, output_name): """ Converts an input MarkDown file to a PDF of the given output name. Parameters ========== input_name : String Relative file location of the input file to where this function is being called. output_name : String Relative file location of the o...
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AguaClara/aide_document-DEPRECATED
aide_document/convert.py
docx_to_md
def docx_to_md(input_name, output_name): """ Converts an input docx file to MarkDown file of the given output name. Parameters ========== input_name : String Relative file location of the input file to where this function is being called. output_name : String Relative file location of ...
python
def docx_to_md(input_name, output_name): """ Converts an input docx file to MarkDown file of the given output name. Parameters ========== input_name : String Relative file location of the input file to where this function is being called. output_name : String Relative file location of ...
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MrKriss/vigilance
vigilance/vigilance.py
expect
def expect(*exprs): """Tests given sequence of conditions and stores results. Parameters ---------- exprs: bool or tuple of (bool, str) Variable number of expressions evaluated. If a tuple first element is expression evaluated, second is the message displayed on failure in the repo...
python
def expect(*exprs): """Tests given sequence of conditions and stores results. Parameters ---------- exprs: bool or tuple of (bool, str) Variable number of expressions evaluated. If a tuple first element is expression evaluated, second is the message displayed on failure in the repo...
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MrKriss/vigilance
vigilance/vigilance.py
report_failures
def report_failures(error=False, display=True, clear=True): """ Print details of logged failures in expect function If no failures are detected, None is returned by the function. Parameters ---------- error:bool If true, will raise an Expectation of type 'FaliedValidationError' instead of ...
python
def report_failures(error=False, display=True, clear=True): """ Print details of logged failures in expect function If no failures are detected, None is returned by the function. Parameters ---------- error:bool If true, will raise an Expectation of type 'FaliedValidationError' instead of ...
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train
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MrKriss/vigilance
vigilance/vigilance.py
_log_failure
def _log_failure(arg_num, msg=None): """ Retrace stack and log the failed expresion information """ # stack() returns a list of frame records # 0 is the _log_failure() function # 1 is the expect() function # 2 is the function that called expect(), that's what we want # # a frame reco...
python
def _log_failure(arg_num, msg=None): """ Retrace stack and log the failed expresion information """ # stack() returns a list of frame records # 0 is the _log_failure() function # 1 is the expect() function # 2 is the function that called expect(), that's what we want # # a frame reco...
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Retrace stack and log the failed expresion information
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train
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rinocloud/rinocloud-python
rinocloud/collection.py
Collection.set_name
def set_name(self, name, create_dir=False): """ Sets the name of the file to be saved. @params name - the name to the file increment - whether or not to increment the filename if there is an existing file ie test.txt => test1.txt overwrite - whether or not to...
python
def set_name(self, name, create_dir=False): """ Sets the name of the file to be saved. @params name - the name to the file increment - whether or not to increment the filename if there is an existing file ie test.txt => test1.txt overwrite - whether or not to...
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Sets the name of the file to be saved. @params name - the name to the file increment - whether or not to increment the filename if there is an existing file ie test.txt => test1.txt overwrite - whether or not to overwrite existing local file, renders increment redundant
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train
https://github.com/rinocloud/rinocloud-python/blob/7c4bf994a518f961cffedb7260fc1e4fa1838b38/rinocloud/collection.py#L14-L32
hapylestat/apputils
apputils/utils/import_tools/import_tools.py
ModuleArgumentsBuilder.add_argument
def add_argument(self, name, value_type, item_help, default=None): """ :type name str :type value_type Type :type item_help str :type default Type :rtype ModuleArgumentsBuilder """ if value_type and value_type not in self.__restricted_types: raise ArgumentException("Named argument ...
python
def add_argument(self, name, value_type, item_help, default=None): """ :type name str :type value_type Type :type item_help str :type default Type :rtype ModuleArgumentsBuilder """ if value_type and value_type not in self.__restricted_types: raise ArgumentException("Named argument ...
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hapylestat/apputils
apputils/utils/import_tools/import_tools.py
ModuleArgumentsBuilder.default_arguments
def default_arguments(self): """ :rtype dict :rtype dict """ d = OrderedDict() for arg in self._default_args: d.update({arg.name: arg}) return d
python
def default_arguments(self): """ :rtype dict :rtype dict """ d = OrderedDict() for arg in self._default_args: d.update({arg.name: arg}) return d
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train
https://github.com/hapylestat/apputils/blob/5d185616feda27e6e21273307161471ef11a3518/apputils/utils/import_tools/import_tools.py#L53-L63
hapylestat/apputils
apputils/utils/import_tools/import_tools.py
ModuleArgumentsBuilder.add_default_argument
def add_default_argument(self, name, value_type, item_help, default=None): """ :type name str :type value_type Type :type item_help str :type default Type :rtype ModuleArgumentsBuilder """ if value_type not in self.__restricted_default_types: raise ArgumentException("Positional(def...
python
def add_default_argument(self, name, value_type, item_help, default=None): """ :type name str :type value_type Type :type item_help str :type default Type :rtype ModuleArgumentsBuilder """ if value_type not in self.__restricted_default_types: raise ArgumentException("Positional(def...
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hapylestat/apputils
apputils/utils/import_tools/import_tools.py
ModuleMetaInfo.parse_default_arguments
def parse_default_arguments(self, default_args_sample): """ :type default_args_sample list :rtype dict """ parsed_arguments_dict = {} default_arguments = list(self._arguments.default_arguments.values()) expected_length = len(default_arguments) real_length = len(default_args_sample) ...
python
def parse_default_arguments(self, default_args_sample): """ :type default_args_sample list :rtype dict """ parsed_arguments_dict = {} default_arguments = list(self._arguments.default_arguments.values()) expected_length = len(default_arguments) real_length = len(default_args_sample) ...
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train
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hapylestat/apputils
apputils/utils/import_tools/import_tools.py
ModuleMetaInfo.parse_arguments
def parse_arguments(self, conf): """ :type conf apputils.settings.Configuration|dict """ parsed_arguments_dict = {} arguments = self._arguments.arguments for arg_name in arguments: arg_meta = arguments[arg_name] """:type arg_meta ModuleArgumentItem""" try: if arg_meta....
python
def parse_arguments(self, conf): """ :type conf apputils.settings.Configuration|dict """ parsed_arguments_dict = {} arguments = self._arguments.arguments for arg_name in arguments: arg_meta = arguments[arg_name] """:type arg_meta ModuleArgumentItem""" try: if arg_meta....
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train
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hapylestat/apputils
apputils/utils/import_tools/import_tools.py
ModulesDiscovery.generate_help
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python
def generate_help(self, filename="", command=""): """ :type command str """ "{} [{}]\n\n".format(filename, "|".join(self.available_command_list)) help_str = """Available commands: """ command_list = self.available_command_list if command == "" else [command] for command in command_lis...
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hapylestat/apputils
apputils/utils/import_tools/import_tools.py
ModulesDiscovery.execute_command
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python
def execute_command(self, default_arg_list=None, **kwargs): """ :type default_arg_list list :type kwargs dict """ _custom_func_arguments = set() if default_arg_list is None or len(default_arg_list) == 0: raise NoCommandException("No command passed, unable to continue") command_name =...
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hapylestat/apputils
apputils/utils/import_tools/import_tools.py
ModulesDiscovery.main
def main(self, configuration): """ :type configuration Configuration """ _custom_func_arguments = {"conf"} filename = os.path.basename(os.path.abspath(sys.argv[0])) default_arg_list = [item for item in configuration.get("default") if len(item.strip()) != 0] if len(default_arg_list) == 0: ...
python
def main(self, configuration): """ :type configuration Configuration """ _custom_func_arguments = {"conf"} filename = os.path.basename(os.path.abspath(sys.argv[0])) default_arg_list = [item for item in configuration.get("default") if len(item.strip()) != 0] if len(default_arg_list) == 0: ...
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hephs/dispatk
dispatk.py
dispatk
def dispatk(keyer): """This is the decorator for the generic function and it accepts only one argument *keyer*, it'll be called with the same arguments of the function call and it must return an hashable object (int, tuple, etc.). Rhe generic function has a *register* method used to decorate the ...
python
def dispatk(keyer): """This is the decorator for the generic function and it accepts only one argument *keyer*, it'll be called with the same arguments of the function call and it must return an hashable object (int, tuple, etc.). Rhe generic function has a *register* method used to decorate the ...
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opinkerfi/nago
nago/extensions/agent.py
start
def start(debug=False, host='127.0.0.1'): """ starts a nago agent (daemon) process """ if debug: debug = True nago.protocols.httpserver.app.run(debug=debug, host=host)
python
def start(debug=False, host='127.0.0.1'): """ starts a nago agent (daemon) process """ if debug: debug = True nago.protocols.httpserver.app.run(debug=debug, host=host)
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ylogx/far
far/main.py
parse_known_args
def parse_known_args(): """ Parse command line arguments """ parser = argparse.ArgumentParser() parser.add_argument('-V', '--version', action='store_true', dest='version', help='Print the version number and exit') mutually_exclu...
python
def parse_known_args(): """ Parse command line arguments """ parser = argparse.ArgumentParser() parser.add_argument('-V', '--version', action='store_true', dest='version', help='Print the version number and exit') mutually_exclu...
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ylogx/far
far/main.py
main
def main(): """ Main """ args, otherthings = parse_known_args() if args.version: print_version() return 0 verbosity = 0 if args.verbose: verbosity = 1 far = Far(verbosity=verbosity) if args.dry_run: far.dry_run(old=args.old) else: far.find_...
python
def main(): """ Main """ args, otherthings = parse_known_args() if args.version: print_version() return 0 verbosity = 0 if args.verbose: verbosity = 1 far = Far(verbosity=verbosity) if args.dry_run: far.dry_run(old=args.old) else: far.find_...
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testing-cabal/systemfixtures
systemfixtures/filesystem.py
FakeFilesystem.add
def add(self, path): """Add a path to the overlay filesytem. Any filesystem operation involving the this path or any sub-paths of it will be transparently redirected to temporary root dir. @path: An absolute path string. """ if not path.startswith(os.sep): r...
python
def add(self, path): """Add a path to the overlay filesytem. Any filesystem operation involving the this path or any sub-paths of it will be transparently redirected to temporary root dir. @path: An absolute path string. """ if not path.startswith(os.sep): r...
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testing-cabal/systemfixtures
systemfixtures/filesystem.py
FakeFilesystem._fchown
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python
def _fchown(self, real, fileno, uid, gid): """Run fake fchown code if fileno points to a sub-path of our tree. The ownership set with this fake fchown can be inspected by looking at the self.uid/self.gid dictionaries. """ path = self._fake_path(self._path_from_fd(fileno)) ...
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Run fake fchown code if fileno points to a sub-path of our tree. The ownership set with this fake fchown can be inspected by looking at the self.uid/self.gid dictionaries.
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anovelmous-dev-squad/anovelmous-grammar
grammar/__init__.py
GrammarFilter.get_grammatically_correct_vocabulary_subset
def get_grammatically_correct_vocabulary_subset(self, text, sent_filter='combined'): """ Returns a subset of a given vocabulary based on whether its terms are "grammatically correct". """ tokens = word_tokenize(text) sen...
python
def get_grammatically_correct_vocabulary_subset(self, text, sent_filter='combined'): """ Returns a subset of a given vocabulary based on whether its terms are "grammatically correct". """ tokens = word_tokenize(text) sen...
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dlancer/django-pages-cms
pages/managers/pagemanager.py
PageManager.get_queryset
def get_queryset(self, *args, **kwargs): """ Ensures that this manager always returns nodes in tree order. """ qs = super(TreeManager, self).get_queryset(*args, **kwargs) # Restrict operations to pages on the current site if needed if settings.PAGES_HIDE_SITES and settin...
python
def get_queryset(self, *args, **kwargs): """ Ensures that this manager always returns nodes in tree order. """ qs = super(TreeManager, self).get_queryset(*args, **kwargs) # Restrict operations to pages on the current site if needed if settings.PAGES_HIDE_SITES and settin...
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dlancer/django-pages-cms
pages/managers/pagemanager.py
PageManager.on_site
def on_site(self, site_id=None): """Return a :class:`QuerySet` of pages that are published on the site defined by the ``SITE_ID`` setting. :param site_id: specify the id of the site object to filter with. """ if settings.PAGES_USE_SITE_ID: if not site_id: ...
python
def on_site(self, site_id=None): """Return a :class:`QuerySet` of pages that are published on the site defined by the ``SITE_ID`` setting. :param site_id: specify the id of the site object to filter with. """ if settings.PAGES_USE_SITE_ID: if not site_id: ...
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FujiMakoto/IPS-Vagrant
ips_vagrant/installer/__init__.py
installer
def installer(cv, ctx, site, force=False): """ Installer factory @param cv: Current version (The version of IPS we are installing) @type cv: ips_vagrant.common.version.Version @type ctx: ips_vagrant.cli.Context @param site: The IPS Site we are installing @type site: ip...
python
def installer(cv, ctx, site, force=False): """ Installer factory @param cv: Current version (The version of IPS we are installing) @type cv: ips_vagrant.common.version.Version @type ctx: ips_vagrant.cli.Context @param site: The IPS Site we are installing @type site: ip...
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pjuren/pyokit
src/pyokit/scripts/conservationProfile.py
center_start
def center_start(r, window_size): """ Center a region on its start and expand it to window_size bases. :return: the new region. """ res = copy.copy(r) res.end = res.start + window_size / 2 res.start = res.end - window_size return res
python
def center_start(r, window_size): """ Center a region on its start and expand it to window_size bases. :return: the new region. """ res = copy.copy(r) res.end = res.start + window_size / 2 res.start = res.end - window_size return res
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pjuren/pyokit
src/pyokit/scripts/conservationProfile.py
center_end
def center_end(r, window_size): """ Center a region on its end and expand it to window_size bases. :return: the new region. """ res = copy.copy(r) res.start = res.end - window_size / 2 res.end = res.start + window_size return res
python
def center_end(r, window_size): """ Center a region on its end and expand it to window_size bases. :return: the new region. """ res = copy.copy(r) res.start = res.end - window_size / 2 res.end = res.start + window_size return res
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train
https://github.com/pjuren/pyokit/blob/fddae123b5d817daa39496183f19c000d9c3791f/src/pyokit/scripts/conservationProfile.py#L96-L105
pjuren/pyokit
src/pyokit/scripts/conservationProfile.py
center_middle
def center_middle(r, window_size): """ Center a region on its middle and expand it to window_size bases. :return: the new region. """ res = copy.copy(r) mid = res.start + (len(res) / 2) res.start = mid - (window_size / 2) res.end = res.start + window_size return res
python
def center_middle(r, window_size): """ Center a region on its middle and expand it to window_size bases. :return: the new region. """ res = copy.copy(r) mid = res.start + (len(res) / 2) res.start = mid - (window_size / 2) res.end = res.start + window_size return res
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train
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pjuren/pyokit
src/pyokit/scripts/conservationProfile.py
transform_locus
def transform_locus(region, window_center, window_size): """ transform an input genomic region into one suitable for the profile. :param region: input region to transform. :param window_center: which part of the input region to center on. :param window_size: how large the resultant region should ...
python
def transform_locus(region, window_center, window_size): """ transform an input genomic region into one suitable for the profile. :param region: input region to transform. :param window_center: which part of the input region to center on. :param window_size: how large the resultant region should ...
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train
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pjuren/pyokit
src/pyokit/scripts/conservationProfile.py
pid
def pid(col, ignore_gaps=False): """ Compute the percent identity of a an alignment column. Define PID as the frequency of the most frequent nucleotide in the column. :param col: an alignment column; a dictionary where keys are seq. names and values are the nucleotide in the colu...
python
def pid(col, ignore_gaps=False): """ Compute the percent identity of a an alignment column. Define PID as the frequency of the most frequent nucleotide in the column. :param col: an alignment column; a dictionary where keys are seq. names and values are the nucleotide in the colu...
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pjuren/pyokit
src/pyokit/scripts/conservationProfile.py
conservtion_profile_pid
def conservtion_profile_pid(region, genome_alignment, mi_seqs=MissingSequenceHandler.TREAT_AS_ALL_GAPS, species=None): """ build a conservation profile for the given region using the genome alignment. The scores in the profile will be the percent of bases i...
python
def conservtion_profile_pid(region, genome_alignment, mi_seqs=MissingSequenceHandler.TREAT_AS_ALL_GAPS, species=None): """ build a conservation profile for the given region using the genome alignment. The scores in the profile will be the percent of bases i...
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build a conservation profile for the given region using the genome alignment. The scores in the profile will be the percent of bases identical to the reference sequence. :param miss_seqs: how to treat sequence with no actual sequence data for the column. :return: a list of the same length ...
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train
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pjuren/pyokit
src/pyokit/scripts/conservationProfile.py
merge_profile
def merge_profile(mean_profile, new_profile): """Add a new list of values to a list of rolling means.""" for i in range(0, len(mean_profile)): if new_profile[i] is None: continue mean_profile[i].add(new_profile[i])
python
def merge_profile(mean_profile, new_profile): """Add a new list of values to a list of rolling means.""" for i in range(0, len(mean_profile)): if new_profile[i] is None: continue mean_profile[i].add(new_profile[i])
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train
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pjuren/pyokit
src/pyokit/scripts/conservationProfile.py
processBED
def processBED(fh, genome_alig, window_size, window_centre, mi_seqs=MissingSequenceHandler.TREAT_AS_ALL_GAPS, species=None, verbose=False): """ Process BED file, produce profile of conservation using whole genome alig. :param fh: :param genome_alig: the whole-genome alignment to...
python
def processBED(fh, genome_alig, window_size, window_centre, mi_seqs=MissingSequenceHandler.TREAT_AS_ALL_GAPS, species=None, verbose=False): """ Process BED file, produce profile of conservation using whole genome alig. :param fh: :param genome_alig: the whole-genome alignment to...
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Process BED file, produce profile of conservation using whole genome alig. :param fh: :param genome_alig: the whole-genome alignment to use to compute conservation scores :param window_size: length of the profile. :param window_center: which part of each interval to place at the cen...
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train
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pjuren/pyokit
src/pyokit/scripts/conservationProfile.py
getUI
def getUI(prog_name, args): """Build and return user interface object for this script.""" longDescription = "Given a set of BED intervals, compute a profile of " +\ "conservation by averaging over all intervals using a " +\ "whole genome alignment to a set of relevent species...
python
def getUI(prog_name, args): """Build and return user interface object for this script.""" longDescription = "Given a set of BED intervals, compute a profile of " +\ "conservation by averaging over all intervals using a " +\ "whole genome alignment to a set of relevent species...
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Build and return user interface object for this script.
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pjuren/pyokit
src/pyokit/scripts/conservationProfile.py
main
def main(args, prog_name): """Process the command line arguments of this script and dispatch.""" # get options and arguments ui = getUI(prog_name, args) if ui.optionIsSet("test"): # just run unit tests unittest.main(argv=[sys.argv[0]]) elif ui.optionIsSet("help"): # just show help ui.usage() ...
python
def main(args, prog_name): """Process the command line arguments of this script and dispatch.""" # get options and arguments ui = getUI(prog_name, args) if ui.optionIsSet("test"): # just run unit tests unittest.main(argv=[sys.argv[0]]) elif ui.optionIsSet("help"): # just show help ui.usage() ...
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etcher-be/elib_run
elib_run/_run/_run.py
check_error
def check_error(context: RunContext) -> int: """ Runs after a sub-process exits Checks the return code; if it is different than 0, then a few things happen: - if the process was muted ("mute" is True), the process output is printed anyway - if "failure_ok" is True (default), then a SystemE...
python
def check_error(context: RunContext) -> int: """ Runs after a sub-process exits Checks the return code; if it is different than 0, then a few things happen: - if the process was muted ("mute" is True), the process output is printed anyway - if "failure_ok" is True (default), then a SystemE...
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train
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etcher-be/elib_run
elib_run/_run/_run.py
run
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python
def run(cmd: str, *paths: str, cwd: str = '.', mute: bool = False, filters: typing.Optional[typing.Union[typing.Iterable[str], str]] = None, failure_ok: bool = False, timeout: float = _DEFAULT_PROCESS_TIMEOUT, ) -> typing.Tuple[str, int]: """ Executes a co...
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Executes a command and returns the result Args: cmd: command to execute paths: paths to search executable in cwd: working directory (defaults to ".") mute: if true, output will not be printed filters: gives a list of partial strings to filter out from the output (stdout or s...
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train
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fred49/linshare-api
linshareapi/admin/jwt.py
Jwt.list
def list(self, domain=None): """Workaround: data is automatically filtered by domain.""" # pylint: disable=arguments-differ if domain: return self._list(domain) url = "{base}".format( base="domains" ) domains = self.core.get(url) res = [] ...
python
def list(self, domain=None): """Workaround: data is automatically filtered by domain.""" # pylint: disable=arguments-differ if domain: return self._list(domain) url = "{base}".format( base="domains" ) domains = self.core.get(url) res = [] ...
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Workaround: data is automatically filtered by domain.
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train
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sys-git/certifiable
certifiable/cli_impl/complex/certify_dict.py
cli_certify_complex_dict
def cli_certify_complex_dict( config, schema, key_certifier, value_certifier, allow_extra, include_collections, value, ): """Console script for certify_dict.""" schema = load_json_pickle(schema, config) key_certifier = create_certifier(load_json_pickle(key_certifier, config)) value_certifier = c...
python
def cli_certify_complex_dict( config, schema, key_certifier, value_certifier, allow_extra, include_collections, value, ): """Console script for certify_dict.""" schema = load_json_pickle(schema, config) key_certifier = create_certifier(load_json_pickle(key_certifier, config)) value_certifier = c...
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Console script for certify_dict.
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train
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monkeython/scriba
scriba/schemes/scriba_https.py
write
def write(url, content, **args): """Put the object/collection into a file URL.""" with HTTPSResource(url, **args) as resource: resource.write(content)
python
def write(url, content, **args): """Put the object/collection into a file URL.""" with HTTPSResource(url, **args) as resource: resource.write(content)
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train
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usc-isi-i2/dig-sparkutil
digSparkUtil/fileUtil.py
main
def main(argv=None): '''TEST ONLY: this is called if run from command line''' parser = argparse.ArgumentParser() parser.add_argument('-i','--input_file', required=True) parser.add_argument('--input_file_format', default='sequence') parser.add_argument('--input_data_type', default='json') parser...
python
def main(argv=None): '''TEST ONLY: this is called if run from command line''' parser = argparse.ArgumentParser() parser.add_argument('-i','--input_file', required=True) parser.add_argument('--input_file_format', default='sequence') parser.add_argument('--input_data_type', default='json') parser...
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TEST ONLY: this is called if run from command line
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usc-isi-i2/dig-sparkutil
digSparkUtil/fileUtil.py
FileUtil._load_text_csv_file
def _load_text_csv_file(self, filename, separator=',', **kwargs): """Return a pair RDD where key is taken from first column, remaining columns are named after their column id as string""" rdd_input = self.sc.textFile(filename) def load_csv_record(line): input_stream = StringIO.Strin...
python
def _load_text_csv_file(self, filename, separator=',', **kwargs): """Return a pair RDD where key is taken from first column, remaining columns are named after their column id as string""" rdd_input = self.sc.textFile(filename) def load_csv_record(line): input_stream = StringIO.Strin...
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train
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usc-isi-i2/dig-sparkutil
digSparkUtil/fileUtil.py
FileUtil.get_config
def get_config(config_spec): """Like get_json_config but does not parse result as JSON""" config_file = None if config_spec.startswith("http"): # URL: fetch it config_file = urllib.urlopen(config_spec) else: # string: open file with that name ...
python
def get_config(config_spec): """Like get_json_config but does not parse result as JSON""" config_file = None if config_spec.startswith("http"): # URL: fetch it config_file = urllib.urlopen(config_spec) else: # string: open file with that name ...
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Like get_json_config but does not parse result as JSON
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train
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cirruscluster/cirruscluster
cirruscluster/ext/ansible/runner/lookup_plugins/sequence.py
LookupModule.reset
def reset(self): """set sensible defaults""" self.start = 1 self.count = None self.end = None self.stride = 1 self.format = "%d"
python
def reset(self): """set sensible defaults""" self.start = 1 self.count = None self.end = None self.stride = 1 self.format = "%d"
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set sensible defaults
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train
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cirruscluster/cirruscluster
cirruscluster/ext/ansible/runner/lookup_plugins/sequence.py
LookupModule.parse_kv_args
def parse_kv_args(self, args): """parse key-value style arguments""" for arg in ["start", "end", "count", "stride"]: try: arg_raw = args.pop(arg, None) if arg_raw is None: continue arg_cooked = int(arg_raw, 0) ...
python
def parse_kv_args(self, args): """parse key-value style arguments""" for arg in ["start", "end", "count", "stride"]: try: arg_raw = args.pop(arg, None) if arg_raw is None: continue arg_cooked = int(arg_raw, 0) ...
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parse key-value style arguments
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train
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cirruscluster/cirruscluster
cirruscluster/ext/ansible/runner/lookup_plugins/sequence.py
LookupModule.parse_simple_args
def parse_simple_args(self, term): """parse the shortcut forms, return True/False""" match = SHORTCUT.match(term) if not match: return False _, start, end, _, stride, _, format = match.groups() if start is not None: try: start = int(start...
python
def parse_simple_args(self, term): """parse the shortcut forms, return True/False""" match = SHORTCUT.match(term) if not match: return False _, start, end, _, stride, _, format = match.groups() if start is not None: try: start = int(start...
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parse the shortcut forms, return True/False
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train
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coghost/izen
izen/crawler.py
ParseHeaderFromFile.parse_headers
def parse_headers(self, use_cookies, raw): """ analyze headers from file or raw messages :return: (url, dat) :rtype: """ if not raw: packet = helper.to_str(helper.read_file(self.fpth)) else: packet = raw dat = {} pks = [x ...
python
def parse_headers(self, use_cookies, raw): """ analyze headers from file or raw messages :return: (url, dat) :rtype: """ if not raw: packet = helper.to_str(helper.read_file(self.fpth)) else: packet = raw dat = {} pks = [x ...
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analyze headers from file or raw messages :return: (url, dat) :rtype:
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train
https://github.com/coghost/izen/blob/432db017f99dd2ba809e1ba1792145ab6510263d/izen/crawler.py#L82-L113
coghost/izen
izen/crawler.py
ParseHeaderFromFile.fmt_cookies
def fmt_cookies(self, ck): """ :param ck: :type ck: :return: :rtype: """ cks = {} for c in ck.split(';'): a = c.split('=') if len(a) != 2: continue cks[a[0].replace(' ', '')] = a[1].replace(' ', '') ...
python
def fmt_cookies(self, ck): """ :param ck: :type ck: :return: :rtype: """ cks = {} for c in ck.split(';'): a = c.split('=') if len(a) != 2: continue cks[a[0].replace(' ', '')] = a[1].replace(' ', '') ...
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:param ck: :type ck: :return: :rtype:
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train
https://github.com/coghost/izen/blob/432db017f99dd2ba809e1ba1792145ab6510263d/izen/crawler.py#L115-L128
coghost/izen
izen/crawler.py
Crawler.spawn
def spawn(self, url, force_spawn=False): """use the url for creation of domain and fetch cookies - init cache dir by the url domain as ``<base>/domain`` - save the cookies to file ``<base>/domain/cookie.txt`` - init ``headers.get/post/json`` with response info - init ``site_dir/...
python
def spawn(self, url, force_spawn=False): """use the url for creation of domain and fetch cookies - init cache dir by the url domain as ``<base>/domain`` - save the cookies to file ``<base>/domain/cookie.txt`` - init ``headers.get/post/json`` with response info - init ``site_dir/...
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train
https://github.com/coghost/izen/blob/432db017f99dd2ba809e1ba1792145ab6510263d/izen/crawler.py#L179-L227
coghost/izen
izen/crawler.py
Crawler.get_domain_home_from_url
def get_domain_home_from_url(self, url): """ parse url for domain and homepage :param url: the req url :type url: str :return: (homepage, domain) :rtype: """ p = parse.urlparse(url) if p.netloc: self.domain = p.netloc self.homepage...
python
def get_domain_home_from_url(self, url): """ parse url for domain and homepage :param url: the req url :type url: str :return: (homepage, domain) :rtype: """ p = parse.urlparse(url) if p.netloc: self.domain = p.netloc self.homepage...
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parse url for domain and homepage :param url: the req url :type url: str :return: (homepage, domain) :rtype:
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train
https://github.com/coghost/izen/blob/432db017f99dd2ba809e1ba1792145ab6510263d/izen/crawler.py#L229-L243
coghost/izen
izen/crawler.py
Crawler.map_url_to_cache_id
def map_url_to_cache_id(self, url): """use of the url resource location as cached id e.g.: ``<domain>/foo/bar/a.html => <base>/domain/foo/bar/a.html`` - map the url to local file :param url: :type url: :return: :rtype: """ base, _ = self.get_dom...
python
def map_url_to_cache_id(self, url): """use of the url resource location as cached id e.g.: ``<domain>/foo/bar/a.html => <base>/domain/foo/bar/a.html`` - map the url to local file :param url: :type url: :return: :rtype: """ base, _ = self.get_dom...
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train
https://github.com/coghost/izen/blob/432db017f99dd2ba809e1ba1792145ab6510263d/izen/crawler.py#L264-L293
coghost/izen
izen/crawler.py
Crawler.gen_tasks
def gen_tasks(self, urls): """ according the urls gen {name:'', url:''} dict. :param urls: :type urls: :return: :rtype: """ tasks = [] if isinstance(urls, list): for url in urls: dat = { 'url': url, ...
python
def gen_tasks(self, urls): """ according the urls gen {name:'', url:''} dict. :param urls: :type urls: :return: :rtype: """ tasks = [] if isinstance(urls, list): for url in urls: dat = { 'url': url, ...
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train
https://github.com/coghost/izen/blob/432db017f99dd2ba809e1ba1792145ab6510263d/izen/crawler.py#L301-L332
coghost/izen
izen/crawler.py
CommonCrawler.do_sess_get
def do_sess_get(self, url): """get url by requests synchronized :param url: :type url: :return: :rtype: """ try: res = self.sess.get(url, headers=self.headers['get'], timeout=self.timeout) if res.status_code == 200: return ...
python
def do_sess_get(self, url): """get url by requests synchronized :param url: :type url: :return: :rtype: """ try: res = self.sess.get(url, headers=self.headers['get'], timeout=self.timeout) if res.status_code == 200: return ...
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get url by requests synchronized :param url: :type url: :return: :rtype:
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train
https://github.com/coghost/izen/blob/432db017f99dd2ba809e1ba1792145ab6510263d/izen/crawler.py#L347-L360
coghost/izen
izen/crawler.py
CommonCrawler.load
def load(self, url, use_cache=True, show_log=False): """fetch the url ``raw info``, use cache first, if no cache hit, try get from Internet :param url: :type url: :param use_cache: :type use_cache: :param show_log: :type show_log: :return: the ``raw info`...
python
def load(self, url, use_cache=True, show_log=False): """fetch the url ``raw info``, use cache first, if no cache hit, try get from Internet :param url: :type url: :param use_cache: :type use_cache: :param show_log: :type show_log: :return: the ``raw info`...
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train
https://github.com/coghost/izen/blob/432db017f99dd2ba809e1ba1792145ab6510263d/izen/crawler.py#L362-L394
coghost/izen
izen/crawler.py
CommonCrawler.sync_save
def sync_save(self, res, overwrite=False): """ save ``res`` to local synchronized :param res: {'url': '', 'name': ''} :type res: dict :param overwrite: :type overwrite: :return: :rtype: BeautifulSoup """ if not isinstance(res, dict): r...
python
def sync_save(self, res, overwrite=False): """ save ``res`` to local synchronized :param res: {'url': '', 'name': ''} :type res: dict :param overwrite: :type overwrite: :return: :rtype: BeautifulSoup """ if not isinstance(res, dict): r...
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train
https://github.com/coghost/izen/blob/432db017f99dd2ba809e1ba1792145ab6510263d/izen/crawler.py#L448-L478
coghost/izen
izen/crawler.py
AsyncCrawler.crawl_raw
async def crawl_raw(self, res): """ crawl the raw doc, and save it asynchronous. :param res: {'url','', 'name': ''} :type res: ``dict`` :return: :rtype: """ cnt = await self.async_get(res) if cnt: loop_ = asyncio.get_event_loop() a...
python
async def crawl_raw(self, res): """ crawl the raw doc, and save it asynchronous. :param res: {'url','', 'name': ''} :type res: ``dict`` :return: :rtype: """ cnt = await self.async_get(res) if cnt: loop_ = asyncio.get_event_loop() a...
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train
https://github.com/coghost/izen/blob/432db017f99dd2ba809e1ba1792145ab6510263d/izen/crawler.py#L494-L508
coghost/izen
izen/crawler.py
AsyncCrawler._sem_crawl
async def _sem_crawl(self, sem, res): """ use semaphore ``encapsulate`` the crawl_media \n with async crawl, should avoid crawl too fast to become DDos attack to the crawled server should set the ``semaphore size``, and take ``a little gap`` between each crawl behavior. :param sem: the ...
python
async def _sem_crawl(self, sem, res): """ use semaphore ``encapsulate`` the crawl_media \n with async crawl, should avoid crawl too fast to become DDos attack to the crawled server should set the ``semaphore size``, and take ``a little gap`` between each crawl behavior. :param sem: the ...
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use semaphore ``encapsulate`` the crawl_media \n with async crawl, should avoid crawl too fast to become DDos attack to the crawled server should set the ``semaphore size``, and take ``a little gap`` between each crawl behavior. :param sem: the size of semaphore :type sem: :para...
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train
https://github.com/coghost/izen/blob/432db017f99dd2ba809e1ba1792145ab6510263d/izen/crawler.py#L510-L530
coghost/izen
izen/crawler.py
AsyncCrawler.crawl
async def crawl(self, urls, sem): """ :param urls: :type urls: list/dict :param sem: :type sem: :return: :rtype: """ tasks = [ self._sem_crawl(sem, x) for x in urls ] tasks_iter = asyncio.as_completed(tasks)...
python
async def crawl(self, urls, sem): """ :param urls: :type urls: list/dict :param sem: :type sem: :return: :rtype: """ tasks = [ self._sem_crawl(sem, x) for x in urls ] tasks_iter = asyncio.as_completed(tasks)...
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train
https://github.com/coghost/izen/blob/432db017f99dd2ba809e1ba1792145ab6510263d/izen/crawler.py#L532-L555
emencia/emencia-django-forum
forum/utils/imports.py
safe_import_module
def safe_import_module(path, default=None): """ Try to import the specified module from the given Python path @path is a string containing a Python path to the wanted module, @default is an object to return if import fails, it can be None, a callable or whatever you need. Return a object ...
python
def safe_import_module(path, default=None): """ Try to import the specified module from the given Python path @path is a string containing a Python path to the wanted module, @default is an object to return if import fails, it can be None, a callable or whatever you need. Return a object ...
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train
https://github.com/emencia/emencia-django-forum/blob/cda74ed7e5822675c340ee5ec71548d981bccd3b/forum/utils/imports.py#L6-L26
incuna/incuna-pagination
pagination/templatetags/querystrings.py
querystring_update
def querystring_update(request, **kwargs): """ Output a URL-encoded querystring, updated with key:values from `kwargs`. From http://stackoverflow.com/a/24658162. """ updated = request.GET.copy() for k, v in kwargs.items(): updated[k] = v return updated.urlencode()
python
def querystring_update(request, **kwargs): """ Output a URL-encoded querystring, updated with key:values from `kwargs`. From http://stackoverflow.com/a/24658162. """ updated = request.GET.copy() for k, v in kwargs.items(): updated[k] = v return updated.urlencode()
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Output a URL-encoded querystring, updated with key:values from `kwargs`. From http://stackoverflow.com/a/24658162.
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train
https://github.com/incuna/incuna-pagination/blob/a80f923a313e69c9f0e2458f4eb65376b6544817/pagination/templatetags/querystrings.py#L8-L18
alfred82santa/aio-service-client
service_client/json.py
json_decoder
def json_decoder(content, *args, **kwargs): """ Json decoder parser to be used by service_client """ if not content: return None json_value = content.decode() return json.loads(json_value)
python
def json_decoder(content, *args, **kwargs): """ Json decoder parser to be used by service_client """ if not content: return None json_value = content.decode() return json.loads(json_value)
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Json decoder parser to be used by service_client
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train
https://github.com/alfred82santa/aio-service-client/blob/dd9ad49e23067b22178534915aa23ba24f6ff39b/service_client/json.py#L11-L18
mbarakaja/braulio
braulio/cli.py
init
def init(changelog_name): """Setup your project.""" changelog_path = find_chglog_file() create_changelog_flag = True mark = style("?", fg="blue", bold=True) if not changelog_name: if changelog_path: filename = style(changelog_path.name, fg="blue", bold=True) message...
python
def init(changelog_name): """Setup your project.""" changelog_path = find_chglog_file() create_changelog_flag = True mark = style("?", fg="blue", bold=True) if not changelog_name: if changelog_path: filename = style(changelog_path.name, fg="blue", bold=True) message...
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Setup your project.
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train
https://github.com/mbarakaja/braulio/blob/70ab6f0dd631ef78c4da1b39d1c6fb6f9a995d2b/braulio/cli.py#L67-L91
mbarakaja/braulio
braulio/cli.py
bump_option_validator
def bump_option_validator(ctx, param, value): """In case a value is provided checks that it is a valid version string. If is not thrown :class:`click.UsageError`. Return a :class:`~braulio.version.Version` object or **None**. """ if value: try: value = Version(value) ex...
python
def bump_option_validator(ctx, param, value): """In case a value is provided checks that it is a valid version string. If is not thrown :class:`click.UsageError`. Return a :class:`~braulio.version.Version` object or **None**. """ if value: try: value = Version(value) ex...
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In case a value is provided checks that it is a valid version string. If is not thrown :class:`click.UsageError`. Return a :class:`~braulio.version.Version` object or **None**.
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train
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mbarakaja/braulio
braulio/cli.py
changelog_file_option_validator
def changelog_file_option_validator(ctx, param, value): """Checks that the given file path exists in the current working directory. Returns a :class:`~pathlib.Path` object. If the file does not exist raises a :class:`~click.UsageError` exception. """ path = Path(value) if not path.exists(): ...
python
def changelog_file_option_validator(ctx, param, value): """Checks that the given file path exists in the current working directory. Returns a :class:`~pathlib.Path` object. If the file does not exist raises a :class:`~click.UsageError` exception. """ path = Path(value) if not path.exists(): ...
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Checks that the given file path exists in the current working directory. Returns a :class:`~pathlib.Path` object. If the file does not exist raises a :class:`~click.UsageError` exception.
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train
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mbarakaja/braulio
braulio/cli.py
message_option_validator
def message_option_validator(ctx, param, value): """A commit template must have the **{new_version}** placeholder.""" if not value or "{new_version}" not in value: ctx.fail("Missing {new_version} placeholder in " f"{value}.") return value
python
def message_option_validator(ctx, param, value): """A commit template must have the **{new_version}** placeholder.""" if not value or "{new_version}" not in value: ctx.fail("Missing {new_version} placeholder in " f"{value}.") return value
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A commit template must have the **{new_version}** placeholder.
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train
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mbarakaja/braulio
braulio/cli.py
current_version_option_validator
def current_version_option_validator(ctx, param, value): """If a version string is provided, validates it. Otherwise it tries to determine the current version from the last Git tag that matches ``tag_pattern`` option. Return a :class:`~braulio.version.Version` object or **None**. """ current_v...
python
def current_version_option_validator(ctx, param, value): """If a version string is provided, validates it. Otherwise it tries to determine the current version from the last Git tag that matches ``tag_pattern`` option. Return a :class:`~braulio.version.Version` object or **None**. """ current_v...
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If a version string is provided, validates it. Otherwise it tries to determine the current version from the last Git tag that matches ``tag_pattern`` option. Return a :class:`~braulio.version.Version` object or **None**.
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train
https://github.com/mbarakaja/braulio/blob/70ab6f0dd631ef78c4da1b39d1c6fb6f9a995d2b/braulio/cli.py#L158-L191
mbarakaja/braulio
braulio/cli.py
label_pattern_option_validator
def label_pattern_option_validator(ctx, param, value): """Checks that a given string has all the required placeholders. The possible placeholders are **{type}**, **{scope}** and **{subject}**. ``{type}`` are always required, ``{scope}`` is optional and ``{subject}`` are required only when ``label_posit...
python
def label_pattern_option_validator(ctx, param, value): """Checks that a given string has all the required placeholders. The possible placeholders are **{type}**, **{scope}** and **{subject}**. ``{type}`` are always required, ``{scope}`` is optional and ``{subject}`` are required only when ``label_posit...
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Checks that a given string has all the required placeholders. The possible placeholders are **{type}**, **{scope}** and **{subject}**. ``{type}`` are always required, ``{scope}`` is optional and ``{subject}`` are required only when ``label_position`` option is set to ``header``. If the pattern is ...
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train
https://github.com/mbarakaja/braulio/blob/70ab6f0dd631ef78c4da1b39d1c6fb6f9a995d2b/braulio/cli.py#L194-L222
mbarakaja/braulio
braulio/cli.py
release
def release( ctx, bump, bump_type, commit_flag, message, tag_flag, confirm_flag, changelog_file, files, label_pattern, label_position, tag_pattern, current_version, stage, merge_pre, current_tag=None, versions=None, ): """Release a new version. ...
python
def release( ctx, bump, bump_type, commit_flag, message, tag_flag, confirm_flag, changelog_file, files, label_pattern, label_position, tag_pattern, current_version, stage, merge_pre, current_tag=None, versions=None, ): """Release a new version. ...
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Release a new version. Determines the next version by inspecting commit messages, updates the changelog, commit the changes and tag the repository with the new version.
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train
https://github.com/mbarakaja/braulio/blob/70ab6f0dd631ef78c4da1b39d1c6fb6f9a995d2b/braulio/cli.py#L297-L434
lanhel/ftpysetup
ftpysetup/website/config/__init__.py
HTMLTranslator.layout
def layout(self, indent=' '): """This will indent each new tag in the body by given number of spaces.""" self.__indent(self.head, indent) self.__indent(self.meta, indent) self.__indent(self.stylesheet, indent) self.__indent(self.header, indent) self.__indent(self.body, indent, initial=3) self.__inden...
python
def layout(self, indent=' '): """This will indent each new tag in the body by given number of spaces.""" self.__indent(self.head, indent) self.__indent(self.meta, indent) self.__indent(self.stylesheet, indent) self.__indent(self.header, indent) self.__indent(self.body, indent, initial=3) self.__inden...
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This will indent each new tag in the body by given number of spaces.
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train
https://github.com/lanhel/ftpysetup/blob/9cdea6b82658fb4394b582d1fe5b05eaf5746fde/ftpysetup/website/config/__init__.py#L117-L128
lanhel/ftpysetup
ftpysetup/website/config/__init__.py
HTMLTranslator.__indent
def __indent(self, lines, indent, initial=2): """This will indent the given set of lines by normal HTML layout. An initial indent of `2*indent` will be used to account for the `<html><head>` or `<html><body>` levels.""" tagempty = re.compile(r"""<\w+(\s+[^>]*?)*/>""") tagopen = re.compile(r"""<\w+(\s+[^>]*?)*...
python
def __indent(self, lines, indent, initial=2): """This will indent the given set of lines by normal HTML layout. An initial indent of `2*indent` will be used to account for the `<html><head>` or `<html><body>` levels.""" tagempty = re.compile(r"""<\w+(\s+[^>]*?)*/>""") tagopen = re.compile(r"""<\w+(\s+[^>]*?)*...
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This will indent the given set of lines by normal HTML layout. An initial indent of `2*indent` will be used to account for the `<html><head>` or `<html><body>` levels.
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train
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beaugunderson/intervention
intervention/launch.py
main
def main(): """ Show the intervention screen. """ application = Application(sys.argv, ignore_close=not SKIP_FILTER) platform.hide_cursor() with open(resource_filename(__name__, 'intervention.css')) as css: application.setStyleSheet(css.read()) # exec() is required for objc so we m...
python
def main(): """ Show the intervention screen. """ application = Application(sys.argv, ignore_close=not SKIP_FILTER) platform.hide_cursor() with open(resource_filename(__name__, 'intervention.css')) as css: application.setStyleSheet(css.read()) # exec() is required for objc so we m...
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Show the intervention screen.
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train
https://github.com/beaugunderson/intervention/blob/72ee436c38962006b30747e16ac0d20d298ec9d5/intervention/launch.py#L39-L98
dr4ke616/pinky
pinky/scripts/output.py
style_to_ansi_code
def style_to_ansi_code(style): """ :param style: A style name :type style: string :returns: A string containing one or more ansi escape codes that are used to render the given style. :type return: string """ ret = '' for attr_name in _styles[style]: # allow stuff th...
python
def style_to_ansi_code(style): """ :param style: A style name :type style: string :returns: A string containing one or more ansi escape codes that are used to render the given style. :type return: string """ ret = '' for attr_name in _styles[style]: # allow stuff th...
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:param style: A style name :type style: string :returns: A string containing one or more ansi escape codes that are used to render the given style. :type return: string
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train
https://github.com/dr4ke616/pinky/blob/35c165f5a1d410be467621f3152df1dbf458622a/pinky/scripts/output.py#L79-L92
ramrod-project/database-brain
schema/brain/binary/filesystem.py
start_filesystem
def start_filesystem(mountpoint, config=None): # pragma: no cover """ prgramatically mount this filesystem to some mount point :param mountpoint: :param config: :return: """ if has_fuse: if not config: config = BrainStoreConfig() FUSE(BrainSt...
python
def start_filesystem(mountpoint, config=None): # pragma: no cover """ prgramatically mount this filesystem to some mount point :param mountpoint: :param config: :return: """ if has_fuse: if not config: config = BrainStoreConfig() FUSE(BrainSt...
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prgramatically mount this filesystem to some mount point :param mountpoint: :param config: :return:
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train
https://github.com/ramrod-project/database-brain/blob/b024cb44f34cabb9d80af38271ddb65c25767083/schema/brain/binary/filesystem.py#L232-L245
ramrod-project/database-brain
schema/brain/binary/filesystem.py
BrainStore.create
def create(self, path, mode): # pragma: no cover """ This is currently a read-only filessytem. GetAttr will return a stat for everything if getattr raises FuseOSError(ENOENT) OS may call this function and the write function """ # print("create {}".format(path)) ...
python
def create(self, path, mode): # pragma: no cover """ This is currently a read-only filessytem. GetAttr will return a stat for everything if getattr raises FuseOSError(ENOENT) OS may call this function and the write function """ # print("create {}".format(path)) ...
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This is currently a read-only filessytem. GetAttr will return a stat for everything if getattr raises FuseOSError(ENOENT) OS may call this function and the write function
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train
https://github.com/ramrod-project/database-brain/blob/b024cb44f34cabb9d80af38271ddb65c25767083/schema/brain/binary/filesystem.py#L149-L167
ramrod-project/database-brain
schema/brain/binary/filesystem.py
BrainStore.write
def write(self, path, data, offset, fh): # pragma: no cover """ This is a readonly filesystem right now """ # print("write {}".format(path)) with self.attr_lock: base = self.attr[path][BASE_KEY] staged = self.attr[path][STAGED_KEY] if not stag...
python
def write(self, path, data, offset, fh): # pragma: no cover """ This is a readonly filesystem right now """ # print("write {}".format(path)) with self.attr_lock: base = self.attr[path][BASE_KEY] staged = self.attr[path][STAGED_KEY] if not stag...
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This is a readonly filesystem right now
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train
https://github.com/ramrod-project/database-brain/blob/b024cb44f34cabb9d80af38271ddb65c25767083/schema/brain/binary/filesystem.py#L169-L180
ramrod-project/database-brain
schema/brain/binary/filesystem.py
BrainStore._cleanup
def _cleanup(self): # pragma: no cover """ cleans up data that's been in the cache for a while should be called from an async OS call like release? to not impact user :return: """ need_to_delete = [] # can't delete from a dict while iterating with self.attr_loc...
python
def _cleanup(self): # pragma: no cover """ cleans up data that's been in the cache for a while should be called from an async OS call like release? to not impact user :return: """ need_to_delete = [] # can't delete from a dict while iterating with self.attr_loc...
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train
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sci-bots/mpm
mpm/bin/__init__.py
validate_args
def validate_args(args): ''' Apply custom validation and actions based on parsed arguments. Parameters ---------- args : argparse.Namespace Result from ``parse_args`` method of ``argparse.ArgumentParser`` instance. Returns ------- argparse.Namespace Reference to...
python
def validate_args(args): ''' Apply custom validation and actions based on parsed arguments. Parameters ---------- args : argparse.Namespace Result from ``parse_args`` method of ``argparse.ArgumentParser`` instance. Returns ------- argparse.Namespace Reference to...
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Apply custom validation and actions based on parsed arguments. Parameters ---------- args : argparse.Namespace Result from ``parse_args`` method of ``argparse.ArgumentParser`` instance. Returns ------- argparse.Namespace Reference to input ``args``, which have been vali...
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msuozzo/Aduro
aduro/manager.py
KindleProgressMgr.detect_events
def detect_events(self, max_attempts=3): """Returns a list of `Event`s detected from differences in state between the current snapshot and the Kindle Library. `books` and `progress` attributes will be set with the latest API results upon successful completion of the function. R...
python
def detect_events(self, max_attempts=3): """Returns a list of `Event`s detected from differences in state between the current snapshot and the Kindle Library. `books` and `progress` attributes will be set with the latest API results upon successful completion of the function. R...
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https://github.com/msuozzo/Aduro/blob/338eeb1deeff30c198e721b660ae4daca3660911/aduro/manager.py#L36-L70
msuozzo/Aduro
aduro/manager.py
KindleProgressMgr.commit_events
def commit_events(self): """Applies all outstanding `Event`s to the internal state """ # Events are sorted such that, when applied in order, each event # represents a logical change in state. That is, an event never requires # future events' data in order to be parsed. # ...
python
def commit_events(self): """Applies all outstanding `Event`s to the internal state """ # Events are sorted such that, when applied in order, each event # represents a logical change in state. That is, an event never requires # future events' data in order to be parsed. # ...
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Applies all outstanding `Event`s to the internal state
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train
https://github.com/msuozzo/Aduro/blob/338eeb1deeff30c198e721b660ae4daca3660911/aduro/manager.py#L80-L91
florianpaquet/mease
mease/registry.py
Mease._get_registry_names
def _get_registry_names(self, registry): """ Returns functions names for a registry """ return ', '.join( f.__name__ if not isinstance(f, tuple) else f[0].__name__ for f in getattr(self, registry, []))
python
def _get_registry_names(self, registry): """ Returns functions names for a registry """ return ', '.join( f.__name__ if not isinstance(f, tuple) else f[0].__name__ for f in getattr(self, registry, []))
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Returns functions names for a registry
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train
https://github.com/florianpaquet/mease/blob/b9fbd08bbe162c8890c2a2124674371170c319ef/mease/registry.py#L33-L39
florianpaquet/mease
mease/registry.py
Mease.receiver
def receiver(self, func=None, json=False): """ Registers a receiver function """ self.receivers.append((func, json))
python
def receiver(self, func=None, json=False): """ Registers a receiver function """ self.receivers.append((func, json))
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Registers a receiver function
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train
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florianpaquet/mease
mease/registry.py
Mease.sender
def sender(self, func, routing=None, routing_re=None): """ Registers a sender function """ if routing and not isinstance(routing, list): routing = [routing] if routing_re: if not isinstance(routing_re, list): routing_re = [routing_re] ...
python
def sender(self, func, routing=None, routing_re=None): """ Registers a sender function """ if routing and not isinstance(routing, list): routing = [routing] if routing_re: if not isinstance(routing_re, list): routing_re = [routing_re] ...
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Registers a sender function
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train
https://github.com/florianpaquet/mease/blob/b9fbd08bbe162c8890c2a2124674371170c319ef/mease/registry.py#L65-L77
florianpaquet/mease
mease/registry.py
Mease.call_openers
def call_openers(self, client, clients_list): """ Calls openers callbacks """ for func in self.openers: func(client, clients_list)
python
def call_openers(self, client, clients_list): """ Calls openers callbacks """ for func in self.openers: func(client, clients_list)
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Calls openers callbacks
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train
https://github.com/florianpaquet/mease/blob/b9fbd08bbe162c8890c2a2124674371170c319ef/mease/registry.py#L81-L86
florianpaquet/mease
mease/registry.py
Mease.call_closers
def call_closers(self, client, clients_list): """ Calls closers callbacks """ for func in self.closers: func(client, clients_list)
python
def call_closers(self, client, clients_list): """ Calls closers callbacks """ for func in self.closers: func(client, clients_list)
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Calls closers callbacks
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train
https://github.com/florianpaquet/mease/blob/b9fbd08bbe162c8890c2a2124674371170c319ef/mease/registry.py#L88-L93
florianpaquet/mease
mease/registry.py
Mease.call_receivers
def call_receivers(self, client, clients_list, message): """ Calls receivers callbacks """ # Try to parse JSON try: json_message = json.loads(message) except ValueError: json_message = None for func, to_json in self.receivers: ...
python
def call_receivers(self, client, clients_list, message): """ Calls receivers callbacks """ # Try to parse JSON try: json_message = json.loads(message) except ValueError: json_message = None for func, to_json in self.receivers: ...
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Calls receivers callbacks
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train
https://github.com/florianpaquet/mease/blob/b9fbd08bbe162c8890c2a2124674371170c319ef/mease/registry.py#L95-L116
florianpaquet/mease
mease/registry.py
Mease.call_senders
def call_senders(self, routing, clients_list, *args, **kwargs): """ Calls senders callbacks """ for func, routings, routings_re in self.senders: call_callback = False # Message is published globally if routing is None or (routings is None and routings...
python
def call_senders(self, routing, clients_list, *args, **kwargs): """ Calls senders callbacks """ for func, routings, routings_re in self.senders: call_callback = False # Message is published globally if routing is None or (routings is None and routings...
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Calls senders callbacks
[ "Calls", "senders", "callbacks" ]
train
https://github.com/florianpaquet/mease/blob/b9fbd08bbe162c8890c2a2124674371170c319ef/mease/registry.py#L118-L141