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Hackerfleet/hfos | modules/webguides/hfos/guides/guide_manager.py | GuideManager._translate | def _translate(self, input_filename, output_filename):
"""Translate KML file to geojson for import"""
command = [
self.translate_binary,
'-f', 'GeoJSON',
output_filename,
input_filename
]
result = self._runcommand(command)
self.log... | python | def _translate(self, input_filename, output_filename):
"""Translate KML file to geojson for import"""
command = [
self.translate_binary,
'-f', 'GeoJSON',
output_filename,
input_filename
]
result = self._runcommand(command)
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Hackerfleet/hfos | modules/webguides/hfos/guides/guide_manager.py | GuideManager._update_guide | def _update_guide(self, guide, update=False, clear=True):
"""Update a single specified guide"""
kml_filename = os.path.join(self.cache_path, guide + '.kml')
geojson_filename = os.path.join(self.cache_path, guide + '.geojson')
if not os.path.exists(geojson_filename) or update:
... | python | def _update_guide(self, guide, update=False, clear=True):
"""Update a single specified guide"""
kml_filename = os.path.join(self.cache_path, guide + '.kml')
geojson_filename = os.path.join(self.cache_path, guide + '.geojson')
if not os.path.exists(geojson_filename) or update:
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Hackerfleet/hfos | modules/mail/hfos/mail/transmitter.py | send_mail_worker | def send_mail_worker(config, mail, event):
"""Worker task to send out an email, which is a blocking process unless it is threaded"""
log = ""
try:
if config.get('ssl', True):
server = SMTP_SSL(config['server'], port=config['port'], timeout=30)
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"""Worker task to send out an email, which is a blocking process unless it is threaded"""
log = ""
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Hackerfleet/hfos | modules/mail/hfos/mail/transmitter.py | MailTransmitter.send_mail | def send_mail(self, event):
"""Connect to mail server and send actual email"""
mime_mail = MIMEText(event.text)
mime_mail['Subject'] = event.subject
if event.account == 'default':
account_name = self.config.default_account
else:
account_name = event.acco... | python | def send_mail(self, event):
"""Connect to mail server and send actual email"""
mime_mail = MIMEText(event.text)
mime_mail['Subject'] = event.subject
if event.account == 'default':
account_name = self.config.default_account
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Hackerfleet/hfos | hfos/provisions/user.py | provision_system_user | def provision_system_user(items, database_name, overwrite=False, clear=False, skip_user_check=False):
"""Provision a system user"""
from hfos.provisions.base import provisionList
from hfos.database import objectmodels
# TODO: Add a root user and make sure owner can access it later.
# Setting up de... | python | def provision_system_user(items, database_name, overwrite=False, clear=False, skip_user_check=False):
"""Provision a system user"""
from hfos.provisions.base import provisionList
from hfos.database import objectmodels
# TODO: Add a root user and make sure owner can access it later.
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andychase/reparse | reparse/expression.py | AlternatesGroup | def AlternatesGroup(expressions, final_function, name=""):
""" Group expressions using the OR character ``|``
>>> from collections import namedtuple
>>> expr = namedtuple('expr', 'regex group_lengths run')('(1)', [1], None)
>>> grouping = AlternatesGroup([expr, expr], lambda f: None, 'yeah')
>>> gro... | python | def AlternatesGroup(expressions, final_function, name=""):
""" Group expressions using the OR character ``|``
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>>> grouping = AlternatesGroup([expr, expr], lambda f: None, 'yeah')
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andychase/reparse | reparse/expression.py | Group | def Group(expressions, final_function, inbetweens, name=""):
""" Group expressions together with ``inbetweens`` and with the output of a ``final_functions``.
"""
lengths = []
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""" Group expressions together with ``inbetweens`` and with the output of a ``final_functions``.
"""
lengths = []
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andychase/reparse | reparse/expression.py | Expression.findall | def findall(self, string):
""" Parse string, returning all outputs as parsed by functions
"""
output = []
for match in self.pattern.findall(string):
if hasattr(match, 'strip'):
match = [match]
self._list_add(output, self.run(match))
return ... | python | def findall(self, string):
""" Parse string, returning all outputs as parsed by functions
"""
output = []
for match in self.pattern.findall(string):
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match = [match]
self._list_add(output, self.run(match))
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andychase/reparse | reparse/expression.py | Expression.scan | def scan(self, string):
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Hackerfleet/hfos | hfos/logger.py | set_logfile | def set_logfile(path, instance):
"""Specify logfile path"""
global logfile
logfile = os.path.normpath(path) + '/hfos.' + instance + '.log' | python | def set_logfile(path, instance):
"""Specify logfile path"""
global logfile
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Hackerfleet/hfos | hfos/logger.py | is_muted | def is_muted(what):
"""
Checks if a logged event is to be muted for debugging purposes.
Also goes through the solo list - only items in there will be logged!
:param what:
:return:
"""
state = False
for item in solo:
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state = True
else:
... | python | def is_muted(what):
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Checks if a logged event is to be muted for debugging purposes.
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Hackerfleet/hfos | hfos/logger.py | hfoslog | def hfoslog(*what, **kwargs):
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:param *what: Loggable objects (i.e. they have a string representation)
:param lvl: Debug message level
:param exc: Switch to better handle exceptions, use if logging in an
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:param emitter: Optional log source, ... | python | def hfoslog(*what, **kwargs):
"""Logs all *what arguments.
:param *what: Loggable objects (i.e. they have a string representation)
:param lvl: Debug message level
:param exc: Switch to better handle exceptions, use if logging in an
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Hackerfleet/hfos | hfos/ui/tagmanager.py | TagManager.get_tagged | def get_tagged(self, event):
"""Return a list of tagged objects for a schema"""
self.log("Tagged objects request for", event.data, "from",
event.user, lvl=debug)
if event.data in self.tags:
tagged = self._get_tagged(event.data)
response = {
... | python | def get_tagged(self, event):
"""Return a list of tagged objects for a schema"""
self.log("Tagged objects request for", event.data, "from",
event.user, lvl=debug)
if event.data in self.tags:
tagged = self._get_tagged(event.data)
response = {
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Hackerfleet/hfos | modules/navdata/hfos/navdata/provisions/vessel.py | provision_system_vessel | def provision_system_vessel(items, database_name, overwrite=False, clear=False, skip_user_check=False):
"""Provisions the default system vessel"""
from hfos.provisions.base import provisionList
from hfos.database import objectmodels
vessel = objectmodels['vessel'].find_one({'name': 'Default System Ves... | python | def provision_system_vessel(items, database_name, overwrite=False, clear=False, skip_user_check=False):
"""Provisions the default system vessel"""
from hfos.provisions.base import provisionList
from hfos.database import objectmodels
vessel = objectmodels['vessel'].find_one({'name': 'Default System Ves... | [
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Hackerfleet/hfos | modules/maps/hfos/map/maptileservice.py | get_tile | def get_tile(url):
"""
Threadable function to retrieve map tiles from the internet
:param url: URL of tile to get
"""
log = ""
connection = None
try:
if six.PY3:
connection = urlopen(url=url, timeout=2) # NOQA
else:
connection = urlopen(url=url)
... | python | def get_tile(url):
"""
Threadable function to retrieve map tiles from the internet
:param url: URL of tile to get
"""
log = ""
connection = None
try:
if six.PY3:
connection = urlopen(url=url, timeout=2) # NOQA
else:
connection = urlopen(url=url)
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Hackerfleet/hfos | modules/maps/hfos/map/maptileservice.py | MaptileService.tilecache | def tilecache(self, event, *args, **kwargs):
"""Checks and caches a requested tile to disk, then delivers it to
client"""
request, response = event.args[:2]
self.log(request.path, lvl=verbose)
try:
filename, url = self._split_cache_url(request.path, 'tilecache')
... | python | def tilecache(self, event, *args, **kwargs):
"""Checks and caches a requested tile to disk, then delivers it to
client"""
request, response = event.args[:2]
self.log(request.path, lvl=verbose)
try:
filename, url = self._split_cache_url(request.path, 'tilecache')
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yychen/twd97 | twd97/converter.py | todegdec | def todegdec(origin):
"""
Convert from [+/-]DDD°MMM'SSS.SSSS" or [+/-]DDD°MMM.MMMM' to [+/-]DDD.DDDDD
"""
# if the input is already a float (or can be converted to float)
try:
return float(origin)
except ValueError:
pass
# DMS format
m = dms_re.search(origin)
if m:
... | python | def todegdec(origin):
"""
Convert from [+/-]DDD°MMM'SSS.SSSS" or [+/-]DDD°MMM.MMMM' to [+/-]DDD.DDDDD
"""
# if the input is already a float (or can be converted to float)
try:
return float(origin)
except ValueError:
pass
# DMS format
m = dms_re.search(origin)
if m:
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yychen/twd97 | twd97/converter.py | tomindec | def tomindec(origin):
"""
Convert [+/-]DDD.DDDDD to a tuple (degrees, minutes)
"""
origin = float(origin)
degrees = int(origin)
minutes = (origin % 1) * 60
return degrees, minutes | python | def tomindec(origin):
"""
Convert [+/-]DDD.DDDDD to a tuple (degrees, minutes)
"""
origin = float(origin)
degrees = int(origin)
minutes = (origin % 1) * 60
return degrees, minutes | [
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yychen/twd97 | twd97/converter.py | tomindecstr | def tomindecstr(origin):
"""
Convert [+/-]DDD.DDDDD to [+/-]DDD°MMM.MMMM'
"""
degrees, minutes = tomindec(origin)
return u'%d°%f\'' % (degrees, minutes) | python | def tomindecstr(origin):
"""
Convert [+/-]DDD.DDDDD to [+/-]DDD°MMM.MMMM'
"""
degrees, minutes = tomindec(origin)
return u'%d°%f\'' % (degrees, minutes) | [
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yychen/twd97 | twd97/converter.py | todms | def todms(origin):
"""
Convert [+/-]DDD.DDDDD to a tuple (degrees, minutes, seconds)
"""
degrees, minutes = tomindec(origin)
seconds = (minutes % 1) * 60
return degrees, int(minutes), seconds | python | def todms(origin):
"""
Convert [+/-]DDD.DDDDD to a tuple (degrees, minutes, seconds)
"""
degrees, minutes = tomindec(origin)
seconds = (minutes % 1) * 60
return degrees, int(minutes), seconds | [
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yychen/twd97 | twd97/converter.py | todmsstr | def todmsstr(origin):
"""
Convert [+/-]DDD.DDDDD to [+/-]DDD°MMM'DDD.DDDDD"
"""
degrees, minutes, seconds = todms(origin)
return u'%d°%d\'%f"' % (degrees, minutes, seconds) | python | def todmsstr(origin):
"""
Convert [+/-]DDD.DDDDD to [+/-]DDD°MMM'DDD.DDDDD"
"""
degrees, minutes, seconds = todms(origin)
return u'%d°%d\'%f"' % (degrees, minutes, seconds) | [
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yychen/twd97 | twd97/converter.py | towgs84 | def towgs84(E, N, pkm=False, presentation=None):
"""
Convert coordintes from TWD97 to WGS84
The east and north coordinates should be in meters and in float
pkm true for Penghu, Kinmen and Matsu area
You can specify one of the following presentations of the returned values:
dms - A tuple wit... | python | def towgs84(E, N, pkm=False, presentation=None):
"""
Convert coordintes from TWD97 to WGS84
The east and north coordinates should be in meters and in float
pkm true for Penghu, Kinmen and Matsu area
You can specify one of the following presentations of the returned values:
dms - A tuple wit... | [
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pkm true for Penghu, Kinmen and Matsu area
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dms - A tuple with degrees (int), minutes (int) and seconds (float)
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yychen/twd97 | twd97/converter.py | fromwgs84 | def fromwgs84(lat, lng, pkm=False):
"""
Convert coordintes from WGS84 to TWD97
pkm true for Penghu, Kinmen and Matsu area
The latitude and longitude can be in the following formats:
[+/-]DDD°MMM'SSS.SSSS" (unicode)
[+/-]DDD°MMM.MMMM' (unicode)
[+/-]DDD.DDDDD (string, unicode or ... | python | def fromwgs84(lat, lng, pkm=False):
"""
Convert coordintes from WGS84 to TWD97
pkm true for Penghu, Kinmen and Matsu area
The latitude and longitude can be in the following formats:
[+/-]DDD°MMM'SSS.SSSS" (unicode)
[+/-]DDD°MMM.MMMM' (unicode)
[+/-]DDD.DDDDD (string, unicode or ... | [
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[+/-]DDD°MMM.MMMM' (unicode)
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Hackerfleet/hfos | modules/maps/hfos/map/TileTools.py | TileUtils.clipValue | def clipValue(self, value, minValue, maxValue):
'''
Makes sure that value is within a specific range.
If not, then the lower or upper bounds is returned
'''
return min(max(value, minValue), maxValue) | python | def clipValue(self, value, minValue, maxValue):
'''
Makes sure that value is within a specific range.
If not, then the lower or upper bounds is returned
'''
return min(max(value, minValue), maxValue) | [
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Hackerfleet/hfos | modules/maps/hfos/map/TileTools.py | TileUtils.getGroundResolution | def getGroundResolution(self, latitude, level):
'''
returns the ground resolution for based on latitude and zoom level.
'''
latitude = self.clipValue(latitude, self.min_lat, self.max_lat);
mapSize = self.getMapDimensionsByZoomLevel(level)
return math.cos(
lati... | python | def getGroundResolution(self, latitude, level):
'''
returns the ground resolution for based on latitude and zoom level.
'''
latitude = self.clipValue(latitude, self.min_lat, self.max_lat);
mapSize = self.getMapDimensionsByZoomLevel(level)
return math.cos(
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Hackerfleet/hfos | modules/maps/hfos/map/TileTools.py | TileUtils.getMapScale | def getMapScale(self, latitude, level, dpi=96):
'''
returns the map scale on the dpi of the screen
'''
dpm = dpi / 0.0254 # convert to dots per meter
return self.getGroundResolution(latitude, level) * dpm | python | def getMapScale(self, latitude, level, dpi=96):
'''
returns the map scale on the dpi of the screen
'''
dpm = dpi / 0.0254 # convert to dots per meter
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Hackerfleet/hfos | modules/maps/hfos/map/TileTools.py | TileUtils.convertLatLngToPixelXY | def convertLatLngToPixelXY(self, lat, lng, level):
'''
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and longitude.
'''
mapSize = self.getMapDimensionsByZoomLevel(level)
lat = self.clipValue(lat, self.min_lat, self.max_lat)
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'''
returns the x and y values of the pixel corresponding to a latitude
and longitude.
'''
mapSize = self.getMapDimensionsByZoomLevel(level)
lat = self.clipValue(lat, self.min_lat, self.max_lat)
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Hackerfleet/hfos | modules/maps/hfos/map/TileTools.py | TileUtils.convertPixelXYToLngLat | def convertPixelXYToLngLat(self, pixelX, pixelY, level):
'''
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'''
mapSize = self.getMapDimensionsByZoomLevel(level)
x = (self.clipValue(pixelX, 0, mapSize - 1) / mapSize) - 0.5
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'''
converts a pixel x, y to a latitude and longitude.
'''
mapSize = self.getMapDimensionsByZoomLevel(level)
x = (self.clipValue(pixelX, 0, mapSize - 1) / mapSize) - 0.5
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Hackerfleet/hfos | modules/maps/hfos/map/TileTools.py | TileUtils.tileXYZToQuadKey | def tileXYZToQuadKey(self, x, y, z):
'''
Computes quadKey value based on tile x, y and z values.
'''
quadKey = ''
for i in range(z, 0, -1):
digit = 0
mask = 1 << (i - 1)
if (x & mask) != 0:
digit += 1
if (y & mask) !... | python | def tileXYZToQuadKey(self, x, y, z):
'''
Computes quadKey value based on tile x, y and z values.
'''
quadKey = ''
for i in range(z, 0, -1):
digit = 0
mask = 1 << (i - 1)
if (x & mask) != 0:
digit += 1
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Hackerfleet/hfos | modules/maps/hfos/map/TileTools.py | TileUtils.quadKeyToTileXYZ | def quadKeyToTileXYZ(self, quadKey):
'''
Computes tile x, y and z values based on quadKey.
'''
tileX = 0
tileY = 0
tileZ = len(quadKey)
for i in range(tileZ, 0, -1):
mask = 1 << (i - 1)
value = quadKey[tileZ - i]
if value == '... | python | def quadKeyToTileXYZ(self, quadKey):
'''
Computes tile x, y and z values based on quadKey.
'''
tileX = 0
tileY = 0
tileZ = len(quadKey)
for i in range(tileZ, 0, -1):
mask = 1 << (i - 1)
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Hackerfleet/hfos | modules/maps/hfos/map/TileTools.py | TileUtils.getTileOrigin | def getTileOrigin(self, tileX, tileY, level):
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Returns the upper-left hand corner lat/lng for a tile
'''
pixelX, pixelY = self.convertTileXYToPixelXY(tileX, tileY)
lng, lat = self.convertPixelXYToLngLat(pixelX, pixelY, level)
return (lat, lng) | python | def getTileOrigin(self, tileX, tileY, level):
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Returns the upper-left hand corner lat/lng for a tile
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pixelX, pixelY = self.convertTileXYToPixelXY(tileX, tileY)
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Hackerfleet/hfos | modules/alert/hfos/alert/manager.py | Manager.trigger | def trigger(self, event):
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Hackerfleet/hfos | hfos/tool/cli.py | cli | def cli(ctx, instance, quiet, verbose, log_level, dbhost, dbname):
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astrocatalogs/astrocats | astrocats/main.py | main | def main():
"""Primary entry point for all AstroCats catalogs.
From this entry point, all internal catalogs can be accessed and their
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"""
from datetime import datetime
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"""Primary entry point for all AstroCats catalogs.
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astrocatalogs/astrocats | astrocats/main.py | setup_user_config | def setup_user_config(log):
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astrocatalogs/astrocats | compare.py | compare_dicts | def compare_dicts(old_full, new_full, old_data, new_data, depth=0):
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scivision/morecvutils | morecvutils/lineClipping.py | cohensutherland | def cohensutherland(xmin, ymax, xmax, ymin, x1, y1, x2, y2):
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scivision/morecvutils | morecvutils/calcOptFlow.py | setupuv | def setupuv(rc):
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astrocatalogs/astrocats | astrocats/catalog/model.py | Model._init_cat_dict | def _init_cat_dict(self, cat_dict_class, key_in_self, **kwargs):
"""Initialize a CatDict object, checking for errors.
"""
# Catch errors associated with crappy, but not unexpected data
try:
new_entry = cat_dict_class(self, key=key_in_self, **kwargs)
except CatDictErro... | python | def _init_cat_dict(self, cat_dict_class, key_in_self, **kwargs):
"""Initialize a CatDict object, checking for errors.
"""
# Catch errors associated with crappy, but not unexpected data
try:
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astrocatalogs/astrocats | astrocats/catalog/model.py | Model._add_cat_dict | def _add_cat_dict(self,
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**kwargs):
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doesn't already exist within the Entry.
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astrocatalogs/astrocats | astrocats/catalog/utils/tq_funcs.py | pbar | def pbar(iter, desc='', **kwargs):
"""Wrapper for `tqdm` progress bar.
"""
return tqdm(
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desc=('<' + str(datetime.now().strftime("%Y-%m-%d %H:%M:%S")) + '> ' +
desc),
dynamic_ncols=True,
**kwargs) | python | def pbar(iter, desc='', **kwargs):
"""Wrapper for `tqdm` progress bar.
"""
return tqdm(
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astrocatalogs/astrocats | astrocats/catalog/utils/tq_funcs.py | pbar_strings | def pbar_strings(files, desc='', **kwargs):
"""Wrapper for `tqdm` progress bar which also sorts list of strings
"""
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dynamic_ncols=True,
... | python | def pbar_strings(files, desc='', **kwargs):
"""Wrapper for `tqdm` progress bar which also sorts list of strings
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astrocatalogs/astrocats | astrocats/catalog/catalog.py | _get_task_priority | def _get_task_priority(tasks, task_priority):
"""Get the task `priority` corresponding to the given `task_priority`.
If `task_priority` is an integer or 'None', return it.
If `task_priority` is a str, return the priority of the task it matches.
Otherwise, raise `ValueError`.
"""
if task_priorit... | python | def _get_task_priority(tasks, task_priority):
"""Get the task `priority` corresponding to the given `task_priority`.
If `task_priority` is an integer or 'None', return it.
If `task_priority` is a str, return the priority of the task it matches.
Otherwise, raise `ValueError`.
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astrocatalogs/astrocats | astrocats/catalog/catalog.py | Catalog.import_data | def import_data(self):
"""Run all of the import tasks.
This is executed by the 'scripts.main.py' when the module is run as an
executable. This can also be run as a method, in which case default
arguments are loaded, but can be overriden using `**kwargs`.
"""
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"""Run all of the import tasks.
This is executed by the 'scripts.main.py' when the module is run as an
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astrocatalogs/astrocats | astrocats/catalog/catalog.py | Catalog.load_task_list | def load_task_list(self):
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astrocatalogs/astrocats | astrocats/catalog/catalog.py | Catalog.add_entry | def add_entry(self, name, load=True, delete=True):
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FIX: rename to `create_entry`???
Returns
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entries : OrderedDict of Entry objects
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astrocatalogs/astrocats | astrocats/catalog/catalog.py | Catalog.find_entry_name_of_alias | def find_entry_name_of_alias(self, alias):
"""Return the first entry name with the given 'alias' included in its
list of aliases.
Returns
-------
name of matching entry (str) or 'None' if no matches
"""
if alias in self.aliases:
name = self.aliases[a... | python | def find_entry_name_of_alias(self, alias):
"""Return the first entry name with the given 'alias' included in its
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name of matching entry (str) or 'None' if no matches
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astrocatalogs/astrocats | astrocats/catalog/catalog.py | Catalog.copy_entry_to_entry | def copy_entry_to_entry(self,
fromentry,
destentry,
check_for_dupes=True,
compare_to_existing=True):
"""Used by `merge_duplicates`
"""
self.log.info("Copy entry object '{}' to '{}'".fo... | python | def copy_entry_to_entry(self,
fromentry,
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compare_to_existing=True):
"""Used by `merge_duplicates`
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astrocatalogs/astrocats | astrocats/catalog/catalog.py | Catalog.merge_duplicates | def merge_duplicates(self):
"""Merge and remove duplicate entries.
Compares each entry ('name') in `stubs` to all later entries to check
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merged and written to file.
"""
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... | python | def merge_duplicates(self):
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astrocatalogs/astrocats | astrocats/catalog/catalog.py | Catalog.load_stubs | def load_stubs(self, log_mem=False):
"""Load all events in their `stub` (name, alias, etc only) form.
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"""
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astrocatalogs/astrocats | astrocats/catalog/catalog.py | Catalog._delete_entry_file | def _delete_entry_file(self, entry_name=None, entry=None):
"""Delete the file associated with the given entry.
"""
if entry_name is None and entry is None:
raise RuntimeError("Either `entry_name` or `entry` must be given.")
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... | python | def _delete_entry_file(self, entry_name=None, entry=None):
"""Delete the file associated with the given entry.
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astrocatalogs/astrocats | astrocats/catalog/catalog.py | Catalog.journal_entries | def journal_entries(self,
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gz=False,
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astrocatalogs/astrocats | astrocats/catalog/catalog.py | Catalog.set_preferred_names | def set_preferred_names(self):
"""Choose between each entries given name and its possible aliases for
the best one.
"""
if len(self.entries) == 0:
self.log.error("WARNING: `entries` is empty, loading stubs")
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task_str = self.get_current_t... | python | def set_preferred_names(self):
"""Choose between each entries given name and its possible aliases for
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astrocatalogs/astrocats | astrocats/catalog/catalog.py | Catalog._prep_git_add_file_list | def _prep_git_add_file_list(self,
repo,
size_limit,
fail=True,
file_types=None):
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Notes
-----
... | python | def _prep_git_add_file_list(self,
repo,
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astrocatalogs/astrocats | astrocats/catalog/catalog.py | Catalog.load_url | def load_url(self,
url,
fname,
repo=None,
timeout=120,
post=None,
fail=False,
write=True,
json_sort=None,
cache_only=False,
archived_mode=None,
... | python | def load_url(self,
url,
fname,
repo=None,
timeout=120,
post=None,
fail=False,
write=True,
json_sort=None,
cache_only=False,
archived_mode=None,
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astrocatalogs/astrocats | astrocats/catalog/catalog.py | Catalog.download_url | def download_url(self, url, timeout, fail=False, post=None, verify=True):
"""Download text from the given url.
Returns `None` on failure.
Arguments
---------
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url : str
URL web address to download.
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"""Download text from the given url.
Returns `None` on failure.
Arguments
---------
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url : str
URL web address to download.
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astrocatalogs/astrocats | astrocats/catalog/catdict.py | CatDict.append_sources_from | def append_sources_from(self, other):
"""Merge the source alias lists of two CatDicts."""
# Get aliases lists from this `CatDict` and other
self_aliases = self[self._KEYS.SOURCE].split(',')
other_aliases = other[self._KEYS.SOURCE].split(',')
# Store alias to `self`
self[... | python | def append_sources_from(self, other):
"""Merge the source alias lists of two CatDicts."""
# Get aliases lists from this `CatDict` and other
self_aliases = self[self._KEYS.SOURCE].split(',')
other_aliases = other[self._KEYS.SOURCE].split(',')
# Store alias to `self`
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astrocatalogs/astrocats | astrocats/catalog/task.py | Task.current_task | def current_task(self, args):
"""Name of current action for progress-bar output.
The specific task string is depends on the configuration via `args`.
Returns
-------
ctask : str
String representation of this task.
"""
ctask = self.nice_name if self.n... | python | def current_task(self, args):
"""Name of current action for progress-bar output.
The specific task string is depends on the configuration via `args`.
Returns
-------
ctask : str
String representation of this task.
"""
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astrocatalogs/astrocats | astrocats/catalog/task.py | Task.load_archive | def load_archive(self, args):
"""Whether previously archived data should be loaded.
"""
import warnings
warnings.warn("`Task.load_archive()` is deprecated! "
"`Catalog.load_url` handles the same functionality.")
return self.archived or args.archived | python | def load_archive(self, args):
"""Whether previously archived data should be loaded.
"""
import warnings
warnings.warn("`Task.load_archive()` is deprecated! "
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return self.archived or args.archived | [
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astrocatalogs/astrocats | astrocats/catalog/gitter.py | get_sha | def get_sha(path=None, log=None, short=False, timeout=None):
"""Use `git rev-parse HEAD <REPO>` to get current SHA.
"""
# git_command = "git rev-parse HEAD {}".format(repo_name).split()
# git_command = "git rev-parse HEAD".split()
git_command = ["git", "rev-parse"]
if short:
git_command.... | python | def get_sha(path=None, log=None, short=False, timeout=None):
"""Use `git rev-parse HEAD <REPO>` to get current SHA.
"""
# git_command = "git rev-parse HEAD {}".format(repo_name).split()
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git_command = ["git", "rev-parse"]
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astrocatalogs/astrocats | astrocats/catalog/gitter.py | git_add_commit_push_all_repos | def git_add_commit_push_all_repos(cat):
"""Add all files in each data repository tree, commit, push.
Creates a commit message based on the current catalog version info.
If either the `git add` or `git push` commands fail, an error will be
raised. Currently, if `commit` fails an error *WILL NOT* be ra... | python | def git_add_commit_push_all_repos(cat):
"""Add all files in each data repository tree, commit, push.
Creates a commit message based on the current catalog version info.
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astrocatalogs/astrocats | astrocats/catalog/gitter.py | git_pull_all_repos | def git_pull_all_repos(cat, strategy_recursive=True, strategy='theirs'):
"""Perform a 'git pull' in each data repository.
> `git pull -s recursive -X theirs`
"""
# raise RuntimeError("THIS DOESNT WORK YET!")
log = cat.log
log.debug("gitter.git_pull_all_repos()")
log.warning("WARNING: using ... | python | def git_pull_all_repos(cat, strategy_recursive=True, strategy='theirs'):
"""Perform a 'git pull' in each data repository.
> `git pull -s recursive -X theirs`
"""
# raise RuntimeError("THIS DOESNT WORK YET!")
log = cat.log
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astrocatalogs/astrocats | astrocats/catalog/gitter.py | git_clone_all_repos | def git_clone_all_repos(cat):
"""Perform a 'git clone' for each data repository that doesnt exist.
"""
log = cat.log
log.debug("gitter.git_clone_all_repos()")
all_repos = cat.PATHS.get_all_repo_folders()
out_repos = cat.PATHS.get_repo_output_folders()
for repo in all_repos:
log.info... | python | def git_clone_all_repos(cat):
"""Perform a 'git clone' for each data repository that doesnt exist.
"""
log = cat.log
log.debug("gitter.git_clone_all_repos()")
all_repos = cat.PATHS.get_all_repo_folders()
out_repos = cat.PATHS.get_repo_output_folders()
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astrocatalogs/astrocats | astrocats/catalog/gitter.py | git_reset_all_repos | def git_reset_all_repos(cat, hard=True, origin=False, clean=True):
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"""
log = cat.log
log.debug("gitter.git_reset_all_repos()")
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... | python | def git_reset_all_repos(cat, hard=True, origin=False, clean=True):
"""Perform a 'git reset' in each data repository.
"""
log = cat.log
log.debug("gitter.git_reset_all_repos()")
all_repos = cat.PATHS.get_all_repo_folders()
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astrocatalogs/astrocats | astrocats/catalog/gitter.py | git_status_all_repos | def git_status_all_repos(cat, hard=True, origin=False, clean=True):
"""Perform a 'git status' in each data repository.
"""
log = cat.log
log.debug("gitter.git_status_all_repos()")
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"""Perform a 'git status' in each data repository.
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log = cat.log
log.debug("gitter.git_status_all_repos()")
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astrocatalogs/astrocats | astrocats/catalog/gitter.py | clone | def clone(repo, log, depth=1):
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Should be called from the subclassed `Catalog` objects, passed a list
of specific repository names.
Arguments
---------
all_repos : list of str
*Absolute* path specification of each target rep... | python | def clone(repo, log, depth=1):
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astrocatalogs/astrocats | astrocats/catalog/gitter.py | _call_command_in_repo | def _call_command_in_repo(comm, repo, log, fail=False, log_flag=True):
"""Use `subprocess` to call a command in a certain (repo) directory.
Logs the output (both `stderr` and `stdout`) to the log, and checks the
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Raises
------
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"""Use `subprocess` to call a command in a certain (repo) directory.
Logs the output (both `stderr` and `stdout`) to the log, and checks the
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Raises
------
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astrocatalogs/astrocats | astrocats/catalog/spectrum.py | Spectrum._check | def _check(self):
"""Check that spectrum has legal combination of attributes."""
# Run the super method
super(Spectrum, self)._check()
err_str = None
has_data = self._KEYS.DATA in self
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has_flux = self._KEYS.FLUXES in self... | python | def _check(self):
"""Check that spectrum has legal combination of attributes."""
# Run the super method
super(Spectrum, self)._check()
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astrocatalogs/astrocats | astrocats/catalog/spectrum.py | Spectrum.is_duplicate_of | def is_duplicate_of(self, other):
"""Check if spectrum is duplicate of another."""
if super(Spectrum, self).is_duplicate_of(other):
return True
row_matches = 0
for ri, row in enumerate(self.get(self._KEYS.DATA, [])):
lambda1, flux1 = tuple(row[0:2])
if... | python | def is_duplicate_of(self, other):
"""Check if spectrum is duplicate of another."""
if super(Spectrum, self).is_duplicate_of(other):
return True
row_matches = 0
for ri, row in enumerate(self.get(self._KEYS.DATA, [])):
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astrocatalogs/astrocats | astrocats/catalog/spectrum.py | Spectrum.sort_func | def sort_func(self, key):
"""Logic for sorting keys in a `Spectrum` relative to one another."""
if key == self._KEYS.TIME:
return 'aaa'
if key == self._KEYS.DATA:
return 'zzy'
if key == self._KEYS.SOURCE:
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"""Logic for sorting keys in a `Spectrum` relative to one another."""
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astrocatalogs/astrocats | astrocats/catalog/key.py | Key.pretty | def pretty(self):
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"""Return a 'pretty' string representation of this `Key`.
note: do not override the builtin `__str__` or `__repr__` methods!
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astrocatalogs/astrocats | astrocats/catalog/key.py | Key.check | def check(self, val):
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astrocatalogs/astrocats | astrocats/catalog/utils/logger.py | get_logger | def get_logger(name=None, stream_fmt=None, file_fmt=None, date_fmt=None,
stream_level=None, file_level=None,
tofile=None, tostr=True):
"""Create a standard logger object which logs to file and or stdout stream.
If a logger has already been created in this session, it is returned
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astrocatalogs/astrocats | astrocats/catalog/utils/logger.py | log_raise | def log_raise(log, err_str, err_type=RuntimeError):
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---------
log : `logging.Logger` object
err_str : str
Error message to be logged and raised.
err_type : `Exception` object
Type of error to raise.
"""
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"""Log an error message and raise an error.
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log : `logging.Logger` object
err_str : str
Error message to be logged and raised.
err_type : `Exception` object
Type of error to raise.
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astrocatalogs/astrocats | astrocats/catalog/utils/logger.py | log_memory | def log_memory(log, pref=None, lvl=logging.DEBUG, raise_flag=True):
"""Log the current memory usage.
"""
import os
import sys
cyc_str = ""
KB = 1024.0
if pref is not None:
cyc_str += "{}: ".format(pref)
# Linux returns units in Bytes; OSX in kilobytes
UNIT = KB*KB if sys.pla... | python | def log_memory(log, pref=None, lvl=logging.DEBUG, raise_flag=True):
"""Log the current memory usage.
"""
import os
import sys
cyc_str = ""
KB = 1024.0
if pref is not None:
cyc_str += "{}: ".format(pref)
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scivision/morecvutils | morecvutils/connectedComponents.py | doblob | def doblob(morphed, blobdet, img, anno=True):
"""
img: can be RGB (MxNx3) or gray (MxN)
http://docs.opencv.org/master/modules/features2d/doc/drawing_function_of_keypoints_and_matches.html
http://docs.opencv.org/trunk/modules/features2d/doc/drawing_function_of_keypoints_and_matches.html
"""
keypo... | python | def doblob(morphed, blobdet, img, anno=True):
"""
img: can be RGB (MxNx3) or gray (MxN)
http://docs.opencv.org/master/modules/features2d/doc/drawing_function_of_keypoints_and_matches.html
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astrocatalogs/astrocats | astrocats/catalog/argshandler.py | ArgsHandler.load_args | def load_args(self, args, clargs):
"""Parse arguments and return configuration settings.
"""
# Parse All Arguments
args = self.parser.parse_args(args=clargs, namespace=args)
# Print the help information if no subcommand is given
# subcommand is required for operation
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"""Parse arguments and return configuration settings.
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astrocatalogs/astrocats | astrocats/catalog/argshandler.py | ArgsHandler._setup_argparse | def _setup_argparse(self):
"""Create `argparse` instance, and setup with appropriate parameters.
"""
parser = argparse.ArgumentParser(
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subparsers = parser.add_subparsers(
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astrocatalogs/astrocats | astrocats/catalog/argshandler.py | ArgsHandler._add_parser_arguments_import | def _add_parser_arguments_import(self, subparsers):
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"""
import_pars = subparsers.add_parser(
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import_pars.add_argument(
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"""Create parser for 'import' subcommand, and associated arguments.
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astrocatalogs/astrocats | astrocats/catalog/argshandler.py | ArgsHandler._add_parser_arguments_git | def _add_parser_arguments_git(self, subparsers):
"""Create a sub-parsers for git subcommands.
"""
subparsers.add_parser(
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help="Clone all defined data repositories if they dont exist.")
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"""Create a sub-parsers for git subcommands.
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astrocatalogs/astrocats | astrocats/catalog/argshandler.py | ArgsHandler._add_parser_arguments_analyze | def _add_parser_arguments_analyze(self, subparsers):
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"""
lyze_pars = subparsers.add_parser(
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"""Create a parser for the 'analyze' subcommand.
"""
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astrocatalogs/astrocats | astrocats/catalog/utils/imports.py | compress_gz | def compress_gz(fname):
"""Compress the file with the given name and delete the uncompressed file.
The compressed filename is simply the input filename with '.gz' appended.
Arguments
---------
fname : str
Name of the file to compress and delete.
Returns
-------
comp_fname : st... | python | def compress_gz(fname):
"""Compress the file with the given name and delete the uncompressed file.
The compressed filename is simply the input filename with '.gz' appended.
Arguments
---------
fname : str
Name of the file to compress and delete.
Returns
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comp_fname : st... | [
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scivision/morecvutils | morecvutils/cv2draw.py | draw_flow | def draw_flow(img, flow, step=16, dtype=uint8):
"""
draws flow vectors on image
this came from opencv/examples directory
another way: http://docs.opencv.org/trunk/doc/py_tutorials/py_gui/py_drawing_functions/py_drawing_functions.html
"""
maxval = iinfo(img.dtype).max
# scaleFact = 1. #arbit... | python | def draw_flow(img, flow, step=16, dtype=uint8):
"""
draws flow vectors on image
this came from opencv/examples directory
another way: http://docs.opencv.org/trunk/doc/py_tutorials/py_gui/py_drawing_functions/py_drawing_functions.html
"""
maxval = iinfo(img.dtype).max
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scivision/morecvutils | morecvutils/cv2draw.py | draw_hsv | def draw_hsv(mag, ang, dtype=uint8, fn=None):
"""
mag must be uint8, uint16, uint32 and 2-D
ang is in radians (float)
"""
assert mag.shape == ang.shape
assert mag.ndim == 2
maxval = iinfo(dtype).max
hsv = dstack(((degrees(ang)/2).astype(dtype), # /2 to keep less than 255
... | python | def draw_hsv(mag, ang, dtype=uint8, fn=None):
"""
mag must be uint8, uint16, uint32 and 2-D
ang is in radians (float)
"""
assert mag.shape == ang.shape
assert mag.ndim == 2
maxval = iinfo(dtype).max
hsv = dstack(((degrees(ang)/2).astype(dtype), # /2 to keep less than 255
... | [
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scivision/morecvutils | morecvutils/cv2draw.py | flow2magang | def flow2magang(flow, dtype=uint8):
"""
flow dimensions y,x,2 3-D. flow[...,0] is magnitude, flow[...,1] is angle
"""
fx, fy = flow[..., 0], flow[..., 1]
return hypot(fx, fy).astype(dtype), arctan2(fy, fx) + pi | python | def flow2magang(flow, dtype=uint8):
"""
flow dimensions y,x,2 3-D. flow[...,0] is magnitude, flow[...,1] is angle
"""
fx, fy = flow[..., 0], flow[..., 1]
return hypot(fx, fy).astype(dtype), arctan2(fy, fx) + pi | [
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vpelletier/python-ioctl-opt | ioctl_opt/__init__.py | IOC | def IOC(dir, type, nr, size):
"""
dir
One of IOC_NONE, IOC_WRITE, IOC_READ, or IOC_READ|IOC_WRITE.
Direction is from the application's point of view, not kernel's.
size (14-bits unsigned integer)
Size of the buffer passed to ioctl's "arg" argument.
"""
assert dir <= _IOC_DIRM... | python | def IOC(dir, type, nr, size):
"""
dir
One of IOC_NONE, IOC_WRITE, IOC_READ, or IOC_READ|IOC_WRITE.
Direction is from the application's point of view, not kernel's.
size (14-bits unsigned integer)
Size of the buffer passed to ioctl's "arg" argument.
"""
assert dir <= _IOC_DIRM... | [
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vpelletier/python-ioctl-opt | ioctl_opt/__init__.py | IOC_TYPECHECK | def IOC_TYPECHECK(t):
"""
Returns the size of given type, and check its suitability for use in an
ioctl command number.
"""
result = ctypes.sizeof(t)
assert result <= _IOC_SIZEMASK, result
return result | python | def IOC_TYPECHECK(t):
"""
Returns the size of given type, and check its suitability for use in an
ioctl command number.
"""
result = ctypes.sizeof(t)
assert result <= _IOC_SIZEMASK, result
return result | [
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