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toloco/pyoanda
pyoanda/client.py
Client.get_orders
def get_orders(self, instrument=None, count=50): """ See more: http://developer.oanda.com/rest-live/orders/#getOrdersForAnAccount """ url = "{0}/{1}/accounts/{2}/orders".format( self.domain, self.API_VERSION, self.account_id ) ...
python
def get_orders(self, instrument=None, count=50): """ See more: http://developer.oanda.com/rest-live/orders/#getOrdersForAnAccount """ url = "{0}/{1}/accounts/{2}/orders".format( self.domain, self.API_VERSION, self.account_id ) ...
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See more: http://developer.oanda.com/rest-live/orders/#getOrdersForAnAccount
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train
https://github.com/toloco/pyoanda/blob/26b3f28a89d07c5c20d2a645884505387f1daae8/pyoanda/client.py#L191-L207
toloco/pyoanda
pyoanda/client.py
Client.get_order
def get_order(self, order_id): """ See more: http://developer.oanda.com/rest-live/orders/#getInformationForAnOrder """ url = "{0}/{1}/accounts/{2}/orders/{3}".format( self.domain, self.API_VERSION, self.account_id, order_id ...
python
def get_order(self, order_id): """ See more: http://developer.oanda.com/rest-live/orders/#getInformationForAnOrder """ url = "{0}/{1}/accounts/{2}/orders/{3}".format( self.domain, self.API_VERSION, self.account_id, order_id ...
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See more: http://developer.oanda.com/rest-live/orders/#getInformationForAnOrder
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train
https://github.com/toloco/pyoanda/blob/26b3f28a89d07c5c20d2a645884505387f1daae8/pyoanda/client.py#L209-L225
toloco/pyoanda
pyoanda/client.py
Client.create_order
def create_order(self, order): """ See more: http://developer.oanda.com/rest-live/orders/#createNewOrder """ url = "{0}/{1}/accounts/{2}/orders".format( self.domain, self.API_VERSION, self.account_id ) try: r...
python
def create_order(self, order): """ See more: http://developer.oanda.com/rest-live/orders/#createNewOrder """ url = "{0}/{1}/accounts/{2}/orders".format( self.domain, self.API_VERSION, self.account_id ) try: r...
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See more: http://developer.oanda.com/rest-live/orders/#createNewOrder
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train
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toloco/pyoanda
pyoanda/client.py
Client.get_trades
def get_trades(self, max_id=None, count=None, instrument=None, ids=None): """ Get a list of open trades Parameters ---------- max_id : int The server will return trades with id less than or equal to this, in descending order (for pagination) ...
python
def get_trades(self, max_id=None, count=None, instrument=None, ids=None): """ Get a list of open trades Parameters ---------- max_id : int The server will return trades with id less than or equal to this, in descending order (for pagination) ...
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train
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toloco/pyoanda
pyoanda/client.py
Client.update_trade
def update_trade( self, trade_id, stop_loss=None, take_profit=None, trailing_stop=None ): """ Modify an existing trade. Note: Only the specified parameters will be modified. All other parameters will remain unchanged. To remove an ...
python
def update_trade( self, trade_id, stop_loss=None, take_profit=None, trailing_stop=None ): """ Modify an existing trade. Note: Only the specified parameters will be modified. All other parameters will remain unchanged. To remove an ...
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Modify an existing trade. Note: Only the specified parameters will be modified. All other parameters will remain unchanged. To remove an optional parameter, set its value to 0. Parameters ---------- trade_id : int The id of the tr...
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train
https://github.com/toloco/pyoanda/blob/26b3f28a89d07c5c20d2a645884505387f1daae8/pyoanda/client.py#L353-L397
toloco/pyoanda
pyoanda/client.py
Client.request_transaction_history
def request_transaction_history(self): """ Request full account history. Submit a request for a full transaction history. A successfully accepted submission results in a response containing a URL in the Location header to a file that will be available once the r...
python
def request_transaction_history(self): """ Request full account history. Submit a request for a full transaction history. A successfully accepted submission results in a response containing a URL in the Location header to a file that will be available once the r...
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train
https://github.com/toloco/pyoanda/blob/26b3f28a89d07c5c20d2a645884505387f1daae8/pyoanda/client.py#L562-L587
toloco/pyoanda
pyoanda/client.py
Client.get_transaction_history
def get_transaction_history(self, max_wait=5.0): """ Download full account history. Uses request_transaction_history to get the transaction history URL, then polls the given URL until it's ready (or the max_wait time is reached) and provides the decoded response....
python
def get_transaction_history(self, max_wait=5.0): """ Download full account history. Uses request_transaction_history to get the transaction history URL, then polls the given URL until it's ready (or the max_wait time is reached) and provides the decoded response....
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train
https://github.com/toloco/pyoanda/blob/26b3f28a89d07c5c20d2a645884505387f1daae8/pyoanda/client.py#L589-L642
toloco/pyoanda
pyoanda/client.py
Client.create_account
def create_account(self, currency=None): """ Create a new account. This call is only available on the sandbox system. Please create accounts on fxtrade.oanda.com on our production system. See more: http://developer.oanda.com/rest-sandbox/accounts/#-a...
python
def create_account(self, currency=None): """ Create a new account. This call is only available on the sandbox system. Please create accounts on fxtrade.oanda.com on our production system. See more: http://developer.oanda.com/rest-sandbox/accounts/#-a...
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Create a new account. This call is only available on the sandbox system. Please create accounts on fxtrade.oanda.com on our production system. See more: http://developer.oanda.com/rest-sandbox/accounts/#-a-name-createtestaccount-a-create-a-test-account
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train
https://github.com/toloco/pyoanda/blob/26b3f28a89d07c5c20d2a645884505387f1daae8/pyoanda/client.py#L644-L661
toloco/pyoanda
pyoanda/client.py
Client.get_accounts
def get_accounts(self, username=None): """ Get a list of accounts owned by the user. Parameters ---------- username : string The name of the user. Note: This is only required on the sandbox, on production systems your access token will ...
python
def get_accounts(self, username=None): """ Get a list of accounts owned by the user. Parameters ---------- username : string The name of the user. Note: This is only required on the sandbox, on production systems your access token will ...
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Get a list of accounts owned by the user. Parameters ---------- username : string The name of the user. Note: This is only required on the sandbox, on production systems your access token will identify you. See more: ...
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train
https://github.com/toloco/pyoanda/blob/26b3f28a89d07c5c20d2a645884505387f1daae8/pyoanda/client.py#L663-L683
ddorn/GUI
GUI/menu.py
MenuElement.choose
def choose(self): """Marks the item as the one the user is in.""" if not self.choosed: self.choosed = True self.pos = self.pos + Sep(5, 0)
python
def choose(self): """Marks the item as the one the user is in.""" if not self.choosed: self.choosed = True self.pos = self.pos + Sep(5, 0)
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train
https://github.com/ddorn/GUI/blob/e1fcb5286d24e0995f280d5180222e51895c368c/GUI/menu.py#L127-L131
ddorn/GUI
GUI/menu.py
MenuElement.stop_choose
def stop_choose(self): """Marks the item as the one the user is not in.""" if self.choosed: self.choosed = False self.pos = self.pos + Sep(-5, 0)
python
def stop_choose(self): """Marks the item as the one the user is not in.""" if self.choosed: self.choosed = False self.pos = self.pos + Sep(-5, 0)
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train
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ddorn/GUI
GUI/menu.py
MenuElement.get_darker_color
def get_darker_color(self): """The color of the clicked version of the MenuElement. Darker than the normal one.""" # we change a bit the color in one direction if bw_contrasted(self._true_color, 30) == WHITE: color = mix(self._true_color, WHITE, 0.9) else: color =...
python
def get_darker_color(self): """The color of the clicked version of the MenuElement. Darker than the normal one.""" # we change a bit the color in one direction if bw_contrasted(self._true_color, 30) == WHITE: color = mix(self._true_color, WHITE, 0.9) else: color =...
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The color of the clicked version of the MenuElement. Darker than the normal one.
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ddorn/GUI
GUI/menu.py
MenuElement.render
def render(self, screen): """Renders the MenuElement""" self.rect.render(screen) super(MenuElement, self).render(screen)
python
def render(self, screen): """Renders the MenuElement""" self.rect.render(screen) super(MenuElement, self).render(screen)
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ddorn/GUI
GUI/gui_examples/bezier.py
gui
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python
def gui(): """Main function""" # ####### # setup all objects # ####### zones = [ALL] last_zones = [] COLORS.remove(WHITE) screen = pygame.display.set_mode(SCREEN_SIZE, DOUBLEBUF) pygame.display.set_caption('Bezier simulator') pygame.event.set_allowed([QUIT, KEYDOWN, MOUSEBUTT...
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ddorn/GUI
GUI/gui_examples/morpion.py
gui
def gui(): """Main function""" # ####### # setup all objects # ####### os.environ['SDL_VIDEO_CENTERED'] = '1' clock = pygame.time.Clock() screen = pygame.display.set_mode(SCREEN_SIZE, DOUBLEBUF | NOFRAME) pygame.event.set_allowed([QUIT, KEYDOWN, MOUSEBUTTONDOWN]) game = Morpion() ...
python
def gui(): """Main function""" # ####### # setup all objects # ####### os.environ['SDL_VIDEO_CENTERED'] = '1' clock = pygame.time.Clock() screen = pygame.display.set_mode(SCREEN_SIZE, DOUBLEBUF | NOFRAME) pygame.event.set_allowed([QUIT, KEYDOWN, MOUSEBUTTONDOWN]) game = Morpion() ...
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Main function
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train
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ddorn/GUI
GUI/font.py
Font.px_to_pt
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python
def px_to_pt(self, px): """Convert a size in pxel to a size in points.""" if px < 200: pt = self.PX_TO_PT[px] else: pt = int(floor((px - 1.21) / 1.332)) return pt
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train
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ddorn/GUI
GUI/font.py
Font.set_size
def set_size(self, pt=None, px=None): """ Set the size of the font, in px or pt. The px method is a bit inacurate, there can be one or two px less, and max 4 for big numbers (like 503) but the size is never over-estimated. It makes almost the good value. """ assert (pt,...
python
def set_size(self, pt=None, px=None): """ Set the size of the font, in px or pt. The px method is a bit inacurate, there can be one or two px less, and max 4 for big numbers (like 503) but the size is never over-estimated. It makes almost the good value. """ assert (pt,...
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train
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ddorn/GUI
GUI/text.py
SimpleText.text
def text(self): """Return the string to render.""" if callable(self._text): return str(self._text()) return str(self._text)
python
def text(self): """Return the string to render.""" if callable(self._text): return str(self._text()) return str(self._text)
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train
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ddorn/GUI
GUI/text.py
SimpleText.color
def color(self, value): """Set the color to a new value (tuple). Renders the text if needed.""" if value != self.color: self._color = value self._render()
python
def color(self, value): """Set the color to a new value (tuple). Renders the text if needed.""" if value != self.color: self._color = value self._render()
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train
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ddorn/GUI
GUI/text.py
SimpleText.bg_color
def bg_color(self, value): """Sets the color to a new value (tuple). Renders the text if needed.""" if value != self.bg_color: self._bg_color = value self._render()
python
def bg_color(self, value): """Sets the color to a new value (tuple). Renders the text if needed.""" if value != self.bg_color: self._bg_color = value self._render()
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train
https://github.com/ddorn/GUI/blob/e1fcb5286d24e0995f280d5180222e51895c368c/GUI/text.py#L84-L89
ddorn/GUI
GUI/text.py
SimpleText.set_font_size
def set_font_size(self, pt=None, px=None): """Set the font size to the desired size, in pt or px.""" self.font.set_size(pt, px) self._render()
python
def set_font_size(self, pt=None, px=None): """Set the font size to the desired size, in pt or px.""" self.font.set_size(pt, px) self._render()
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train
https://github.com/ddorn/GUI/blob/e1fcb5286d24e0995f280d5180222e51895c368c/GUI/text.py#L91-L95
ddorn/GUI
GUI/text.py
SimpleText._render
def _render(self): """ Render the text. Avoid using this fonction too many time as it is slow as it is low to render text and blit it. """ self._last_text = self.text self._surface = self.font.render(self.text, True, self.color, self.bg_color) rect = self._surf...
python
def _render(self): """ Render the text. Avoid using this fonction too many time as it is slow as it is low to render text and blit it. """ self._last_text = self.text self._surface = self.font.render(self.text, True, self.color, self.bg_color) rect = self._surf...
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Render the text. Avoid using this fonction too many time as it is slow as it is low to render text and blit it.
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train
https://github.com/ddorn/GUI/blob/e1fcb5286d24e0995f280d5180222e51895c368c/GUI/text.py#L97-L109
ddorn/GUI
GUI/text.py
SimpleText.render
def render(self, display): """Render basicly the text.""" # to handle changing objects / callable if self.text != self._last_text: self._render() display.blit(self._surface, (self.topleft, self.size))
python
def render(self, display): """Render basicly the text.""" # to handle changing objects / callable if self.text != self._last_text: self._render() display.blit(self._surface, (self.topleft, self.size))
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Render basicly the text.
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train
https://github.com/ddorn/GUI/blob/e1fcb5286d24e0995f280d5180222e51895c368c/GUI/text.py#L111-L117
ddorn/GUI
GUI/text.py
InLineTextBox.cursor
def cursor(self): """The position of the cursor in the text.""" if self._cursor < 0: self.cursor = 0 if self._cursor > len(self): self.cursor = len(self) return self._cursor
python
def cursor(self): """The position of the cursor in the text.""" if self._cursor < 0: self.cursor = 0 if self._cursor > len(self): self.cursor = len(self) return self._cursor
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The position of the cursor in the text.
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train
https://github.com/ddorn/GUI/blob/e1fcb5286d24e0995f280d5180222e51895c368c/GUI/text.py#L151-L159
ddorn/GUI
GUI/text.py
InLineTextBox.move_cursor_one_letter
def move_cursor_one_letter(self, letter=RIGHT): """Move the cursor of one letter to the right (1) or the the left.""" assert letter in (self.RIGHT, self.LEFT) if letter == self.RIGHT: self.cursor += 1 if self.cursor > len(self.text): self.cursor -= 1 ...
python
def move_cursor_one_letter(self, letter=RIGHT): """Move the cursor of one letter to the right (1) or the the left.""" assert letter in (self.RIGHT, self.LEFT) if letter == self.RIGHT: self.cursor += 1 if self.cursor > len(self.text): self.cursor -= 1 ...
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Move the cursor of one letter to the right (1) or the the left.
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train
https://github.com/ddorn/GUI/blob/e1fcb5286d24e0995f280d5180222e51895c368c/GUI/text.py#L184-L195
ddorn/GUI
GUI/text.py
InLineTextBox.move_cursor_one_word
def move_cursor_one_word(self, word=LEFT): """Move the cursor of one word to the right (1) or the the left (-1).""" assert word in (self.RIGHT, self.LEFT) if word == self.RIGHT: papy = self.text.find(' ', self.cursor) + 1 if not papy: papy = len(self) ...
python
def move_cursor_one_word(self, word=LEFT): """Move the cursor of one word to the right (1) or the the left (-1).""" assert word in (self.RIGHT, self.LEFT) if word == self.RIGHT: papy = self.text.find(' ', self.cursor) + 1 if not papy: papy = len(self) ...
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Move the cursor of one word to the right (1) or the the left (-1).
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train
https://github.com/ddorn/GUI/blob/e1fcb5286d24e0995f280d5180222e51895c368c/GUI/text.py#L197-L211
ddorn/GUI
GUI/text.py
InLineTextBox.delete_one_letter
def delete_one_letter(self, letter=RIGHT): """Delete one letter the right or the the left of the cursor.""" assert letter in (self.RIGHT, self.LEFT) if letter == self.LEFT: papy = self.cursor self.text = self.text[:self.cursor - 1] + self.text[self.cursor:] ...
python
def delete_one_letter(self, letter=RIGHT): """Delete one letter the right or the the left of the cursor.""" assert letter in (self.RIGHT, self.LEFT) if letter == self.LEFT: papy = self.cursor self.text = self.text[:self.cursor - 1] + self.text[self.cursor:] ...
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Delete one letter the right or the the left of the cursor.
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train
https://github.com/ddorn/GUI/blob/e1fcb5286d24e0995f280d5180222e51895c368c/GUI/text.py#L213-L224
ddorn/GUI
GUI/text.py
InLineTextBox.delete_one_word
def delete_one_word(self, word=RIGHT): """Delete one word the right or the the left of the cursor.""" assert word in (self.RIGHT, self.LEFT) if word == self.RIGHT: papy = self.text.find(' ', self.cursor) + 1 if not papy: papy = len(self.text) ...
python
def delete_one_word(self, word=RIGHT): """Delete one word the right or the the left of the cursor.""" assert word in (self.RIGHT, self.LEFT) if word == self.RIGHT: papy = self.text.find(' ', self.cursor) + 1 if not papy: papy = len(self.text) ...
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Delete one word the right or the the left of the cursor.
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train
https://github.com/ddorn/GUI/blob/e1fcb5286d24e0995f280d5180222e51895c368c/GUI/text.py#L226-L242
ddorn/GUI
GUI/text.py
InLineTextBox.add_letter
def add_letter(self, letter): """Add a letter at the cursor pos.""" assert isinstance(letter, str) assert len(letter) == 1 self.text = self.text[:self.cursor] + letter + self.text[self.cursor:] self.cursor += 1
python
def add_letter(self, letter): """Add a letter at the cursor pos.""" assert isinstance(letter, str) assert len(letter) == 1 self.text = self.text[:self.cursor] + letter + self.text[self.cursor:] self.cursor += 1
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Add a letter at the cursor pos.
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train
https://github.com/ddorn/GUI/blob/e1fcb5286d24e0995f280d5180222e51895c368c/GUI/text.py#L244-L250
ddorn/GUI
GUI/text.py
InLineTextBox.update
def update(self, event_or_list): """Update the text and position of cursor according to the event passed.""" event_or_list = super().update(event_or_list) for e in event_or_list: if e.type == KEYDOWN: if e.key == K_RIGHT: if e.mod * KMOD_CTRL: ...
python
def update(self, event_or_list): """Update the text and position of cursor according to the event passed.""" event_or_list = super().update(event_or_list) for e in event_or_list: if e.type == KEYDOWN: if e.key == K_RIGHT: if e.mod * KMOD_CTRL: ...
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Update the text and position of cursor according to the event passed.
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train
https://github.com/ddorn/GUI/blob/e1fcb5286d24e0995f280d5180222e51895c368c/GUI/text.py#L256-L291
ddorn/GUI
GUI/text.py
InLineTextBox._render
def _render(self): """ Render the text. Avoid using this fonction too many times as it is slow as it is slow to render text and blit it. """ self._last_text = self.text self._surface = self.font.render(self.text, True, self.color, self.bg_color) size = self.wid...
python
def _render(self): """ Render the text. Avoid using this fonction too many times as it is slow as it is slow to render text and blit it. """ self._last_text = self.text self._surface = self.font.render(self.text, True, self.color, self.bg_color) size = self.wid...
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Render the text. Avoid using this fonction too many times as it is slow as it is slow to render text and blit it.
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train
https://github.com/ddorn/GUI/blob/e1fcb5286d24e0995f280d5180222e51895c368c/GUI/text.py#L293-L304
ddorn/GUI
GUI/text.py
InLinePassBox.shawn_text
def shawn_text(self): """The text displayed instead of the real one.""" if len(self._shawn_text) == len(self): return self._shawn_text if self.style == self.DOTS: return chr(0x2022) * len(self) ranges = [ (902, 1366), (192, 683), ...
python
def shawn_text(self): """The text displayed instead of the real one.""" if len(self._shawn_text) == len(self): return self._shawn_text if self.style == self.DOTS: return chr(0x2022) * len(self) ranges = [ (902, 1366), (192, 683), ...
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The text displayed instead of the real one.
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train
https://github.com/ddorn/GUI/blob/e1fcb5286d24e0995f280d5180222e51895c368c/GUI/text.py#L348-L372
ddorn/GUI
GUI/text.py
InLinePassBox.cursor_pos
def cursor_pos(self): """The cursor position in pixels.""" if len(self) == 0: return self.left + self.default_text.get_width() papy = self._surface.get_width() if papy > self.w: shift = papy - self.width else: shift = 0 return self.le...
python
def cursor_pos(self): """The cursor position in pixels.""" if len(self) == 0: return self.left + self.default_text.get_width() papy = self._surface.get_width() if papy > self.w: shift = papy - self.width else: shift = 0 return self.le...
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The cursor position in pixels.
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train
https://github.com/ddorn/GUI/blob/e1fcb5286d24e0995f280d5180222e51895c368c/GUI/text.py#L374-L385
ddorn/GUI
GUI/text.py
InLinePassBox._render
def _render(self): """ Render the text. Avoid using this fonction too many times as it is slow as it is slow to render text and blit it. """ self._last_text = self.shawn_text self._surface = self.font.render(self.shawn_text, True, self.color, self.bg_color) siz...
python
def _render(self): """ Render the text. Avoid using this fonction too many times as it is slow as it is slow to render text and blit it. """ self._last_text = self.shawn_text self._surface = self.font.render(self.shawn_text, True, self.color, self.bg_color) siz...
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Render the text. Avoid using this fonction too many times as it is slow as it is slow to render text and blit it.
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train
https://github.com/ddorn/GUI/blob/e1fcb5286d24e0995f280d5180222e51895c368c/GUI/text.py#L387-L398
ddorn/GUI
GUI/text.py
InLinePassBox.render
def render(self, display): """Render basicly the text.""" # to handle changing objects / callable if self.shawn_text != self._last_text: self._render() if self.text: papy = self._surface.get_width() if papy <= self.width: display.blit...
python
def render(self, display): """Render basicly the text.""" # to handle changing objects / callable if self.shawn_text != self._last_text: self._render() if self.text: papy = self._surface.get_width() if papy <= self.width: display.blit...
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Render basicly the text.
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train
https://github.com/ddorn/GUI/blob/e1fcb5286d24e0995f280d5180222e51895c368c/GUI/text.py#L400-L418
ddorn/GUI
GUI/text.py
LaText.latex_to_img
def latex_to_img(tex): """Return a pygame image from a latex template.""" with tempfile.TemporaryDirectory() as tmpdirname: with open(tmpdirname + r'\tex.tex', 'w') as f: f.write(tex) os.system(r"latex {0}\tex.tex -halt-on-error -interaction=batchmode -disable-in...
python
def latex_to_img(tex): """Return a pygame image from a latex template.""" with tempfile.TemporaryDirectory() as tmpdirname: with open(tmpdirname + r'\tex.tex', 'w') as f: f.write(tex) os.system(r"latex {0}\tex.tex -halt-on-error -interaction=batchmode -disable-in...
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Return a pygame image from a latex template.
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train
https://github.com/ddorn/GUI/blob/e1fcb5286d24e0995f280d5180222e51895c368c/GUI/text.py#L443-L456
ddorn/GUI
GUI/colors.py
mix
def mix(color1, color2, pos=0.5): """ Return the mix of two colors at a state of :pos: Retruns color1 * pos + color2 * (1 - pos) """ opp_pos = 1 - pos red = color1[0] * pos + color2[0] * opp_pos green = color1[1] * pos + color2[1] * opp_pos blue = color1[2] * pos + color2[2] * opp_pos ...
python
def mix(color1, color2, pos=0.5): """ Return the mix of two colors at a state of :pos: Retruns color1 * pos + color2 * (1 - pos) """ opp_pos = 1 - pos red = color1[0] * pos + color2[0] * opp_pos green = color1[1] * pos + color2[1] * opp_pos blue = color1[2] * pos + color2[2] * opp_pos ...
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Return the mix of two colors at a state of :pos: Retruns color1 * pos + color2 * (1 - pos)
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train
https://github.com/ddorn/GUI/blob/e1fcb5286d24e0995f280d5180222e51895c368c/GUI/colors.py#L13-L24
ddorn/GUI
GUI/colors.py
name2rgb
def name2rgb(name): """Convert the name of a color into its RGB value""" try: import colour except ImportError: raise ImportError('You need colour to be installed: pip install colour') c = colour.Color(name) color = int(c.red * 255), int(c.green * 255), int(c.blue * 255) return ...
python
def name2rgb(name): """Convert the name of a color into its RGB value""" try: import colour except ImportError: raise ImportError('You need colour to be installed: pip install colour') c = colour.Color(name) color = int(c.red * 255), int(c.green * 255), int(c.blue * 255) return ...
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Convert the name of a color into its RGB value
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train
https://github.com/ddorn/GUI/blob/e1fcb5286d24e0995f280d5180222e51895c368c/GUI/colors.py#L27-L36
lord63/tldr.py
tldr/parser.py
parse_page
def parse_page(page): """Parse the command man page.""" colors = get_config()['colors'] with io.open(page, encoding='utf-8') as f: lines = f.readlines() output_lines = [] for line in lines[1:]: if is_headline(line): continue elif is_description(line): ...
python
def parse_page(page): """Parse the command man page.""" colors = get_config()['colors'] with io.open(page, encoding='utf-8') as f: lines = f.readlines() output_lines = [] for line in lines[1:]: if is_headline(line): continue elif is_description(line): ...
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Parse the command man page.
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train
https://github.com/lord63/tldr.py/blob/73cf9f86254691b2476910ea6a743b6d8bd04963/tldr/parser.py#L12-L34
unbit/sftpclone
sftpclone/sftpclone.py
configure_logging
def configure_logging(level=logging.DEBUG): """Configure the module logging engine.""" if level == logging.DEBUG: # For debugging purposes, log from everyone! logging.basicConfig( level=logging.DEBUG, format='%(asctime)s - %(levelname)s - %(message)s' ) re...
python
def configure_logging(level=logging.DEBUG): """Configure the module logging engine.""" if level == logging.DEBUG: # For debugging purposes, log from everyone! logging.basicConfig( level=logging.DEBUG, format='%(asctime)s - %(levelname)s - %(message)s' ) re...
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Configure the module logging engine.
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train
https://github.com/unbit/sftpclone/blob/1cc89478e680fc4e0d12b1a15b5bafd0390d05da/sftpclone/sftpclone.py#L33-L50
unbit/sftpclone
sftpclone/sftpclone.py
path_join
def path_join(*args): """ Wrapper around `os.path.join`. Makes sure to join paths of the same type (bytes). """ args = (paramiko.py3compat.u(arg) for arg in args) return os.path.join(*args)
python
def path_join(*args): """ Wrapper around `os.path.join`. Makes sure to join paths of the same type (bytes). """ args = (paramiko.py3compat.u(arg) for arg in args) return os.path.join(*args)
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Wrapper around `os.path.join`. Makes sure to join paths of the same type (bytes).
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train
https://github.com/unbit/sftpclone/blob/1cc89478e680fc4e0d12b1a15b5bafd0390d05da/sftpclone/sftpclone.py#L53-L59
unbit/sftpclone
sftpclone/sftpclone.py
parse_username_password_hostname
def parse_username_password_hostname(remote_url): """ Parse a command line string and return username, password, remote hostname and remote path. :param remote_url: A command line string. :return: A tuple, containing username, password, remote hostname and remote path. """ assert remote_url ...
python
def parse_username_password_hostname(remote_url): """ Parse a command line string and return username, password, remote hostname and remote path. :param remote_url: A command line string. :return: A tuple, containing username, password, remote hostname and remote path. """ assert remote_url ...
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Parse a command line string and return username, password, remote hostname and remote path. :param remote_url: A command line string. :return: A tuple, containing username, password, remote hostname and remote path.
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train
https://github.com/unbit/sftpclone/blob/1cc89478e680fc4e0d12b1a15b5bafd0390d05da/sftpclone/sftpclone.py#L62-L85
unbit/sftpclone
sftpclone/sftpclone.py
get_ssh_agent_keys
def get_ssh_agent_keys(logger): """ Ask the SSH agent for a list of keys, and return it. :return: A reference to the SSH agent and a list of keys. """ agent, agent_keys = None, None try: agent = paramiko.agent.Agent() _agent_keys = agent.get_keys() if not _agent_keys: ...
python
def get_ssh_agent_keys(logger): """ Ask the SSH agent for a list of keys, and return it. :return: A reference to the SSH agent and a list of keys. """ agent, agent_keys = None, None try: agent = paramiko.agent.Agent() _agent_keys = agent.get_keys() if not _agent_keys: ...
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Ask the SSH agent for a list of keys, and return it. :return: A reference to the SSH agent and a list of keys.
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train
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unbit/sftpclone
sftpclone/sftpclone.py
create_parser
def create_parser(): """Create the CLI argument parser.""" parser = argparse.ArgumentParser( description='Sync a local and a remote folder through SFTP.' ) parser.add_argument( "path", type=str, metavar="local-path", help="the path of the local folder", ) ...
python
def create_parser(): """Create the CLI argument parser.""" parser = argparse.ArgumentParser( description='Sync a local and a remote folder through SFTP.' ) parser.add_argument( "path", type=str, metavar="local-path", help="the path of the local folder", ) ...
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unbit/sftpclone
sftpclone/sftpclone.py
main
def main(args=None): """The main.""" parser = create_parser() args = vars(parser.parse_args(args)) log_mapping = { 'CRITICAL': logging.CRITICAL, 'ERROR': logging.ERROR, 'WARNING': logging.WARNING, 'INFO': logging.INFO, 'DEBUG': logging.DEBUG, 'NOTSET': lo...
python
def main(args=None): """The main.""" parser = create_parser() args = vars(parser.parse_args(args)) log_mapping = { 'CRITICAL': logging.CRITICAL, 'ERROR': logging.ERROR, 'WARNING': logging.WARNING, 'INFO': logging.INFO, 'DEBUG': logging.DEBUG, 'NOTSET': lo...
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train
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unbit/sftpclone
sftpclone/sftpclone.py
SFTPClone._must_be_deleted
def _must_be_deleted(local_path, r_st): """Return True if the remote correspondent of local_path has to be deleted. i.e. if it doesn't exists locally or if it has a different type from the remote one.""" # if the file doesn't exists if not os.path.lexists(local_path): return...
python
def _must_be_deleted(local_path, r_st): """Return True if the remote correspondent of local_path has to be deleted. i.e. if it doesn't exists locally or if it has a different type from the remote one.""" # if the file doesn't exists if not os.path.lexists(local_path): return...
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unbit/sftpclone
sftpclone/sftpclone.py
SFTPClone._match_modes
def _match_modes(self, remote_path, l_st): """Match mod, utime and uid/gid with locals one.""" self.sftp.chmod(remote_path, S_IMODE(l_st.st_mode)) self.sftp.utime(remote_path, (l_st.st_atime, l_st.st_mtime)) if self.chown: self.sftp.chown(remote_path, l_st.st_uid, l_st.st_gi...
python
def _match_modes(self, remote_path, l_st): """Match mod, utime and uid/gid with locals one.""" self.sftp.chmod(remote_path, S_IMODE(l_st.st_mode)) self.sftp.utime(remote_path, (l_st.st_atime, l_st.st_mtime)) if self.chown: self.sftp.chown(remote_path, l_st.st_uid, l_st.st_gi...
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train
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unbit/sftpclone
sftpclone/sftpclone.py
SFTPClone.file_upload
def file_upload(self, local_path, remote_path, l_st): """Upload local_path to remote_path and set permission and mtime.""" self.sftp.put(local_path, remote_path) self._match_modes(remote_path, l_st)
python
def file_upload(self, local_path, remote_path, l_st): """Upload local_path to remote_path and set permission and mtime.""" self.sftp.put(local_path, remote_path) self._match_modes(remote_path, l_st)
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train
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unbit/sftpclone
sftpclone/sftpclone.py
SFTPClone.remote_delete
def remote_delete(self, remote_path, r_st): """Remove the remote directory node.""" # If it's a directory, then delete content and directory if S_ISDIR(r_st.st_mode): for item in self.sftp.listdir_attr(remote_path): full_path = path_join(remote_path, item.filename) ...
python
def remote_delete(self, remote_path, r_st): """Remove the remote directory node.""" # If it's a directory, then delete content and directory if S_ISDIR(r_st.st_mode): for item in self.sftp.listdir_attr(remote_path): full_path = path_join(remote_path, item.filename) ...
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Remove the remote directory node.
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train
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unbit/sftpclone
sftpclone/sftpclone.py
SFTPClone.check_for_deletion
def check_for_deletion(self, relative_path=None): """Traverse the entire remote_path tree. Find files/directories that need to be deleted, not being present in the local folder. """ if not relative_path: relative_path = str() # root of shared directory tree ...
python
def check_for_deletion(self, relative_path=None): """Traverse the entire remote_path tree. Find files/directories that need to be deleted, not being present in the local folder. """ if not relative_path: relative_path = str() # root of shared directory tree ...
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train
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unbit/sftpclone
sftpclone/sftpclone.py
SFTPClone.create_update_symlink
def create_update_symlink(self, link_destination, remote_path): """Create a new link pointing to link_destination in remote_path position.""" try: # if there's anything, delete it self.sftp.remove(remote_path) except IOError: # that's fine, nothing exists there! pass ...
python
def create_update_symlink(self, link_destination, remote_path): """Create a new link pointing to link_destination in remote_path position.""" try: # if there's anything, delete it self.sftp.remove(remote_path) except IOError: # that's fine, nothing exists there! pass ...
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Create a new link pointing to link_destination in remote_path position.
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train
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unbit/sftpclone
sftpclone/sftpclone.py
SFTPClone.node_check_for_upload_create
def node_check_for_upload_create(self, relative_path, f): """Check if the given directory tree node has to be uploaded/created on the remote folder.""" if not relative_path: # we're at the root of the shared directory tree relative_path = str() # the (absolute) local add...
python
def node_check_for_upload_create(self, relative_path, f): """Check if the given directory tree node has to be uploaded/created on the remote folder.""" if not relative_path: # we're at the root of the shared directory tree relative_path = str() # the (absolute) local add...
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Check if the given directory tree node has to be uploaded/created on the remote folder.
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train
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unbit/sftpclone
sftpclone/sftpclone.py
SFTPClone.check_for_upload_create
def check_for_upload_create(self, relative_path=None): """Traverse the relative_path tree and check for files that need to be uploaded/created. Relativity here refers to the shared directory tree.""" for f in os.listdir( path_join( self.local_path, relative_path) if ...
python
def check_for_upload_create(self, relative_path=None): """Traverse the relative_path tree and check for files that need to be uploaded/created. Relativity here refers to the shared directory tree.""" for f in os.listdir( path_join( self.local_path, relative_path) if ...
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unbit/sftpclone
sftpclone/sftpclone.py
SFTPClone.run
def run(self): """Run the sync. Confront the local and the remote directories and perform the needed changes.""" # Check if remote path is present try: self.sftp.stat(self.remote_path) except FileNotFoundError as e: if self.create_remote_directory: ...
python
def run(self): """Run the sync. Confront the local and the remote directories and perform the needed changes.""" # Check if remote path is present try: self.sftp.stat(self.remote_path) except FileNotFoundError as e: if self.create_remote_directory: ...
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unbit/sftpclone
sftpclone/t/utils.py
list_files
def list_files(start_path): """tree unix command replacement.""" s = u'\n' for root, dirs, files in os.walk(start_path): level = root.replace(start_path, '').count(os.sep) indent = ' ' * 4 * level s += u'{}{}/\n'.format(indent, os.path.basename(root)) sub_indent = ' ' * 4 * (...
python
def list_files(start_path): """tree unix command replacement.""" s = u'\n' for root, dirs, files in os.walk(start_path): level = root.replace(start_path, '').count(os.sep) indent = ' ' * 4 * level s += u'{}{}/\n'.format(indent, os.path.basename(root)) sub_indent = ' ' * 4 * (...
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tree unix command replacement.
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unbit/sftpclone
sftpclone/t/utils.py
file_tree
def file_tree(start_path): """ Create a nested dictionary that represents the folder structure of `start_path`. Liberally adapted from http://code.activestate.com/recipes/577879-create-a-nested-dictionary-from-oswalk/ """ nested_dirs = {} root_dir = start_path.rstrip(os.sep) start = roo...
python
def file_tree(start_path): """ Create a nested dictionary that represents the folder structure of `start_path`. Liberally adapted from http://code.activestate.com/recipes/577879-create-a-nested-dictionary-from-oswalk/ """ nested_dirs = {} root_dir = start_path.rstrip(os.sep) start = roo...
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unbit/sftpclone
sftpclone/t/utils.py
capture_sys_output
def capture_sys_output(): """Capture standard output and error.""" capture_out, capture_err = StringIO(), StringIO() current_out, current_err = sys.stdout, sys.stderr try: sys.stdout, sys.stderr = capture_out, capture_err yield capture_out, capture_err finally: sys.stdout, sy...
python
def capture_sys_output(): """Capture standard output and error.""" capture_out, capture_err = StringIO(), StringIO() current_out, current_err = sys.stdout, sys.stderr try: sys.stdout, sys.stderr = capture_out, capture_err yield capture_out, capture_err finally: sys.stdout, sy...
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Capture standard output and error.
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unbit/sftpclone
sftpclone/t/utils.py
suppress_logging
def suppress_logging(log_level=logging.CRITICAL): """Suppress logging.""" logging.disable(log_level) yield logging.disable(logging.NOTSET)
python
def suppress_logging(log_level=logging.CRITICAL): """Suppress logging.""" logging.disable(log_level) yield logging.disable(logging.NOTSET)
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Suppress logging.
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unbit/sftpclone
sftpclone/t/utils.py
override_env_variables
def override_env_variables(): """Override user environmental variables with custom one.""" env_vars = ("LOGNAME", "USER", "LNAME", "USERNAME") old = [os.environ[v] if v in os.environ else None for v in env_vars] for v in env_vars: os.environ[v] = "test" yield for i, v in enumerate(env_...
python
def override_env_variables(): """Override user environmental variables with custom one.""" env_vars = ("LOGNAME", "USER", "LNAME", "USERNAME") old = [os.environ[v] if v in os.environ else None for v in env_vars] for v in env_vars: os.environ[v] = "test" yield for i, v in enumerate(env_...
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Override user environmental variables with custom one.
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unbit/sftpclone
sftpclone/t/utils.py
override_ssh_auth_env
def override_ssh_auth_env(): """Override the `$SSH_AUTH_SOCK `env variable to mock the absence of an SSH agent.""" ssh_auth_sock = "SSH_AUTH_SOCK" old_ssh_auth_sock = os.environ.get(ssh_auth_sock) del os.environ[ssh_auth_sock] yield if old_ssh_auth_sock: os.environ[ssh_auth_sock] = ol...
python
def override_ssh_auth_env(): """Override the `$SSH_AUTH_SOCK `env variable to mock the absence of an SSH agent.""" ssh_auth_sock = "SSH_AUTH_SOCK" old_ssh_auth_sock = os.environ.get(ssh_auth_sock) del os.environ[ssh_auth_sock] yield if old_ssh_auth_sock: os.environ[ssh_auth_sock] = ol...
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lord63/tldr.py
tldr/config.py
get_config
def get_config(): """Get the configurations from .tldrrc and return it as a dict.""" config_path = path.join( (os.environ.get('TLDR_CONFIG_DIR') or path.expanduser('~')), '.tldrrc') if not path.exists(config_path): sys.exit("Can't find config file at: {0}. You may use `tldr init` " ...
python
def get_config(): """Get the configurations from .tldrrc and return it as a dict.""" config_path = path.join( (os.environ.get('TLDR_CONFIG_DIR') or path.expanduser('~')), '.tldrrc') if not path.exists(config_path): sys.exit("Can't find config file at: {0}. You may use `tldr init` " ...
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Get the configurations from .tldrrc and return it as a dict.
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lord63/tldr.py
tldr/cli.py
parse_man_page
def parse_man_page(command, platform): """Parse the man page and return the parsed lines.""" page_path = find_page_location(command, platform) output_lines = parse_page(page_path) return output_lines
python
def parse_man_page(command, platform): """Parse the man page and return the parsed lines.""" page_path = find_page_location(command, platform) output_lines = parse_page(page_path) return output_lines
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Parse the man page and return the parsed lines.
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lord63/tldr.py
tldr/cli.py
find_page_location
def find_page_location(command, specified_platform): """Find the command man page in the pages directory.""" repo_directory = get_config()['repo_directory'] default_platform = get_config()['platform'] command_platform = ( specified_platform if specified_platform else default_platform) with ...
python
def find_page_location(command, specified_platform): """Find the command man page in the pages directory.""" repo_directory = get_config()['repo_directory'] default_platform = get_config()['platform'] command_platform = ( specified_platform if specified_platform else default_platform) with ...
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Find the command man page in the pages directory.
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train
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lord63/tldr.py
tldr/cli.py
find
def find(command, on): """Find the command usage.""" output_lines = parse_man_page(command, on) click.echo(''.join(output_lines))
python
def find(command, on): """Find the command usage.""" output_lines = parse_man_page(command, on) click.echo(''.join(output_lines))
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Find the command usage.
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train
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lord63/tldr.py
tldr/cli.py
update
def update(): """Update to the latest pages.""" repo_directory = get_config()['repo_directory'] os.chdir(repo_directory) click.echo("Check for updates...") local = subprocess.check_output('git rev-parse master'.split()).strip() remote = subprocess.check_output( 'git ls-remote https://gi...
python
def update(): """Update to the latest pages.""" repo_directory = get_config()['repo_directory'] os.chdir(repo_directory) click.echo("Check for updates...") local = subprocess.check_output('git rev-parse master'.split()).strip() remote = subprocess.check_output( 'git ls-remote https://gi...
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Update to the latest pages.
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train
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lord63/tldr.py
tldr/cli.py
init
def init(): """Init config file.""" default_config_path = path.join( (os.environ.get('TLDR_CONFIG_DIR') or path.expanduser('~')), '.tldrrc') if path.exists(default_config_path): click.echo("There is already a config file exists, " "skip initializing it.") else:...
python
def init(): """Init config file.""" default_config_path = path.join( (os.environ.get('TLDR_CONFIG_DIR') or path.expanduser('~')), '.tldrrc') if path.exists(default_config_path): click.echo("There is already a config file exists, " "skip initializing it.") else:...
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Init config file.
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train
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lord63/tldr.py
tldr/cli.py
locate
def locate(command, on): """Locate the command's man page.""" location = find_page_location(command, on) click.echo(location)
python
def locate(command, on): """Locate the command's man page.""" location = find_page_location(command, on) click.echo(location)
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train
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brentp/cruzdb
cruzdb/sqlsoup.py
TableClassType.relate
def relate(cls, propname, *args, **kwargs): """Produce a relationship between this mapped table and another one. This makes usage of SQLAlchemy's :func:`sqlalchemy.orm.relationship` construct. """ class_mapper(cls)._configure_property(propname, relation...
python
def relate(cls, propname, *args, **kwargs): """Produce a relationship between this mapped table and another one. This makes usage of SQLAlchemy's :func:`sqlalchemy.orm.relationship` construct. """ class_mapper(cls)._configure_property(propname, relation...
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Produce a relationship between this mapped table and another one. This makes usage of SQLAlchemy's :func:`sqlalchemy.orm.relationship` construct.
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train
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brentp/cruzdb
cruzdb/sqlsoup.py
SQLSoup.execute
def execute(self, stmt, **params): """Execute a SQL statement. The statement may be a string SQL string, an :func:`sqlalchemy.sql.expression.select` construct, or a :func:`sqlalchemy.sql.expression.text` construct. """ return self.session.execute(sql.text(stmt...
python
def execute(self, stmt, **params): """Execute a SQL statement. The statement may be a string SQL string, an :func:`sqlalchemy.sql.expression.select` construct, or a :func:`sqlalchemy.sql.expression.text` construct. """ return self.session.execute(sql.text(stmt...
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Execute a SQL statement. The statement may be a string SQL string, an :func:`sqlalchemy.sql.expression.select` construct, or a :func:`sqlalchemy.sql.expression.text` construct.
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train
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brentp/cruzdb
cruzdb/sqlsoup.py
SQLSoup.map_to
def map_to(self, attrname, tablename=None, selectable=None, schema=None, base=None, mapper_args=util.immutabledict()): """Configure a mapping to the given attrname. This is the "master" method that can be used to create any configuration. :param attrname: String a...
python
def map_to(self, attrname, tablename=None, selectable=None, schema=None, base=None, mapper_args=util.immutabledict()): """Configure a mapping to the given attrname. This is the "master" method that can be used to create any configuration. :param attrname: String a...
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Configure a mapping to the given attrname. This is the "master" method that can be used to create any configuration. :param attrname: String attribute name which will be established as an attribute on this :class:.`.SQLSoup` instance. :param base: a Python class wh...
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train
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brentp/cruzdb
cruzdb/sqlsoup.py
SQLSoup.map
def map(self, selectable, base=None, **mapper_args): """Map a selectable directly. The class and its mapping are not cached and will be discarded once dereferenced (as of 0.6.6). :param selectable: an :func:`.expression.select` construct. :param base: a Python class which will ...
python
def map(self, selectable, base=None, **mapper_args): """Map a selectable directly. The class and its mapping are not cached and will be discarded once dereferenced (as of 0.6.6). :param selectable: an :func:`.expression.select` construct. :param base: a Python class which will ...
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train
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brentp/cruzdb
cruzdb/sqlsoup.py
SQLSoup.with_labels
def with_labels(self, selectable, base=None, **mapper_args): """Map a selectable directly, wrapping the selectable in a subquery with labels. The class and its mapping are not cached and will be discarded once dereferenced (as of 0.6.6). :param selectable: an :func:`.expressio...
python
def with_labels(self, selectable, base=None, **mapper_args): """Map a selectable directly, wrapping the selectable in a subquery with labels. The class and its mapping are not cached and will be discarded once dereferenced (as of 0.6.6). :param selectable: an :func:`.expressio...
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train
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brentp/cruzdb
cruzdb/sqlsoup.py
SQLSoup.join
def join(self, left, right, onclause=None, isouter=False, base=None, **mapper_args): """Create an :func:`.expression.join` and map to it. The class and its mapping are not cached and will be discarded once dereferenced (as of 0.6.6). :param left: a mapped class or tabl...
python
def join(self, left, right, onclause=None, isouter=False, base=None, **mapper_args): """Create an :func:`.expression.join` and map to it. The class and its mapping are not cached and will be discarded once dereferenced (as of 0.6.6). :param left: a mapped class or tabl...
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train
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brentp/cruzdb
cruzdb/sqlsoup.py
SQLSoup.entity
def entity(self, attr, schema=None): """Return the named entity from this :class:`.SQLSoup`, or create if not present. For more generalized mapping, see :meth:`.map_to`. """ try: return self._cache[attr] except KeyError, ke: return self.map_to(a...
python
def entity(self, attr, schema=None): """Return the named entity from this :class:`.SQLSoup`, or create if not present. For more generalized mapping, see :meth:`.map_to`. """ try: return self._cache[attr] except KeyError, ke: return self.map_to(a...
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train
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brentp/cruzdb
cruzdb/intersecter.py
distance
def distance(f1, f2): """\ Distance between 2 features. The integer result is always positive or zero. If the features overlap or touch, it is zero. >>> from intersecter import Feature, distance >>> distance(Feature(1, 2), Feature(12, 13)) 10 >>> distance(Feature(1, 2), Feature(2, 3)) 0 ...
python
def distance(f1, f2): """\ Distance between 2 features. The integer result is always positive or zero. If the features overlap or touch, it is zero. >>> from intersecter import Feature, distance >>> distance(Feature(1, 2), Feature(12, 13)) 10 >>> distance(Feature(1, 2), Feature(2, 3)) 0 ...
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\ Distance between 2 features. The integer result is always positive or zero. If the features overlap or touch, it is zero. >>> from intersecter import Feature, distance >>> distance(Feature(1, 2), Feature(12, 13)) 10 >>> distance(Feature(1, 2), Feature(2, 3)) 0 >>> distance(Feature(1, 1...
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train
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brentp/cruzdb
cruzdb/intersecter.py
Intersecter.find
def find(self, start, end, chrom=None): """Return a object of all stored intervals intersecting between (start, end) inclusive.""" intervals = self.intervals[chrom] ilen = len(intervals) # NOTE: we only search for starts, since any feature that starts within max_len of # the quer...
python
def find(self, start, end, chrom=None): """Return a object of all stored intervals intersecting between (start, end) inclusive.""" intervals = self.intervals[chrom] ilen = len(intervals) # NOTE: we only search for starts, since any feature that starts within max_len of # the quer...
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Return a object of all stored intervals intersecting between (start, end) inclusive.
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train
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brentp/cruzdb
cruzdb/intersecter.py
Intersecter.left
def left(self, f, n=1): """return the nearest n features strictly to the left of a Feature f. Overlapping features are not considered as to the left. f: a Feature object n: the number of features to return """ intervals = self.intervals[f.chrom] if intervals == [...
python
def left(self, f, n=1): """return the nearest n features strictly to the left of a Feature f. Overlapping features are not considered as to the left. f: a Feature object n: the number of features to return """ intervals = self.intervals[f.chrom] if intervals == [...
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brentp/cruzdb
cruzdb/intersecter.py
Intersecter.right
def right(self, f, n=1): """return the nearest n features strictly to the right of a Feature f. Overlapping features are not considered as to the right. f: a Feature object n: the number of features to return """ intervals = self.intervals[f.chrom] ilen = len(int...
python
def right(self, f, n=1): """return the nearest n features strictly to the right of a Feature f. Overlapping features are not considered as to the right. f: a Feature object n: the number of features to return """ intervals = self.intervals[f.chrom] ilen = len(int...
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return the nearest n features strictly to the right of a Feature f. Overlapping features are not considered as to the right. f: a Feature object n: the number of features to return
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train
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brentp/cruzdb
cruzdb/intersecter.py
Intersecter.upstream
def upstream(self, f, n=1): """find n upstream features where upstream is determined by the strand of the query Feature f Overlapping features are not considered. f: a Feature object n: the number of features to return """ if f.strand == -1: return se...
python
def upstream(self, f, n=1): """find n upstream features where upstream is determined by the strand of the query Feature f Overlapping features are not considered. f: a Feature object n: the number of features to return """ if f.strand == -1: return se...
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find n upstream features where upstream is determined by the strand of the query Feature f Overlapping features are not considered. f: a Feature object n: the number of features to return
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train
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brentp/cruzdb
cruzdb/intersecter.py
Intersecter.downstream
def downstream(self, f, n=1): """find n downstream features where downstream is determined by the strand of the query Feature f Overlapping features are not considered. f: a Feature object n: the number of features to return """ if f.strand == -1: ret...
python
def downstream(self, f, n=1): """find n downstream features where downstream is determined by the strand of the query Feature f Overlapping features are not considered. f: a Feature object n: the number of features to return """ if f.strand == -1: ret...
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find n downstream features where downstream is determined by the strand of the query Feature f Overlapping features are not considered. f: a Feature object n: the number of features to return
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train
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brentp/cruzdb
cruzdb/intersecter.py
Intersecter.knearest
def knearest(self, f_or_start, end=None, chrom=None, k=1): """return the n nearest neighbors to the given feature f: a Feature object k: the number of features to return """ if end is not None: f = Feature(f_or_start, end, chrom=chrom) else: f = ...
python
def knearest(self, f_or_start, end=None, chrom=None, k=1): """return the n nearest neighbors to the given feature f: a Feature object k: the number of features to return """ if end is not None: f = Feature(f_or_start, end, chrom=chrom) else: f = ...
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return the n nearest neighbors to the given feature f: a Feature object k: the number of features to return
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brentp/cruzdb
scripts/interval_tree.py
IntervalTree.find
def find(self, start, end): """find all elements between (or overlapping) start and end""" if self.intervals and not end < self.intervals[0].start: overlapping = [i for i in self.intervals if i.end >= start and i.start <= end] else:...
python
def find(self, start, end): """find all elements between (or overlapping) start and end""" if self.intervals and not end < self.intervals[0].start: overlapping = [i for i in self.intervals if i.end >= start and i.start <= end] else:...
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find all elements between (or overlapping) start and end
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https://github.com/brentp/cruzdb/blob/9068d46e25952f4a929dde0242beb31fa4c7e89a/scripts/interval_tree.py#L77-L91
brentp/cruzdb
cruzdb/sequence.py
sequence
def sequence(db, chrom, start, end): """ return the sequence for a region using the UCSC DAS server. note the start is 1-based each feature will have it's own .sequence method which sends the correct start and end to this function. >>> sequence('hg18', 'chr2', 2223, 2230) 'caacttag' """...
python
def sequence(db, chrom, start, end): """ return the sequence for a region using the UCSC DAS server. note the start is 1-based each feature will have it's own .sequence method which sends the correct start and end to this function. >>> sequence('hg18', 'chr2', 2223, 2230) 'caacttag' """...
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return the sequence for a region using the UCSC DAS server. note the start is 1-based each feature will have it's own .sequence method which sends the correct start and end to this function. >>> sequence('hg18', 'chr2', 2223, 2230) 'caacttag'
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train
https://github.com/brentp/cruzdb/blob/9068d46e25952f4a929dde0242beb31fa4c7e89a/cruzdb/sequence.py#L10-L23
brentp/cruzdb
cruzdb/mirror.py
set_table
def set_table(genome, table, table_name, connection_string, metadata): """ alter the table to work between different dialects """ table = Table(table_name, genome._metadata, autoload=True, autoload_with=genome.bind, extend_existing=True) #print "\t".join([c.name for c in tab...
python
def set_table(genome, table, table_name, connection_string, metadata): """ alter the table to work between different dialects """ table = Table(table_name, genome._metadata, autoload=True, autoload_with=genome.bind, extend_existing=True) #print "\t".join([c.name for c in tab...
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train
https://github.com/brentp/cruzdb/blob/9068d46e25952f4a929dde0242beb31fa4c7e89a/cruzdb/mirror.py#L39-L80
brentp/cruzdb
cruzdb/__init__.py
Genome.create_url
def create_url(self, db="", user="genome", host="genome-mysql.cse.ucsc.edu", password="", dialect="mysqldb"): """ internal: create a dburl from a set of parameters or the defaults on this object """ if os.path.exists(db): db = "sqlite:///" + db # Is t...
python
def create_url(self, db="", user="genome", host="genome-mysql.cse.ucsc.edu", password="", dialect="mysqldb"): """ internal: create a dburl from a set of parameters or the defaults on this object """ if os.path.exists(db): db = "sqlite:///" + db # Is t...
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train
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brentp/cruzdb
cruzdb/__init__.py
Genome.mirror
def mirror(self, tables, dest_url): """ miror a set of `tables` from `dest_url` Returns a new Genome object Parameters ---------- tables : list an iterable of tables dest_url: str a dburl string, e.g. 'sqlite:///local.db' """ ...
python
def mirror(self, tables, dest_url): """ miror a set of `tables` from `dest_url` Returns a new Genome object Parameters ---------- tables : list an iterable of tables dest_url: str a dburl string, e.g. 'sqlite:///local.db' """ ...
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train
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brentp/cruzdb
cruzdb/__init__.py
Genome.dataframe
def dataframe(self, table): """ create a pandas dataframe from a table or query Parameters ---------- table : table a table in this database or a query limit: integer an integer limit on the query offset: integer an offset f...
python
def dataframe(self, table): """ create a pandas dataframe from a table or query Parameters ---------- table : table a table in this database or a query limit: integer an integer limit on the query offset: integer an offset f...
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create a pandas dataframe from a table or query Parameters ---------- table : table a table in this database or a query limit: integer an integer limit on the query offset: integer an offset for the query
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brentp/cruzdb
cruzdb/__init__.py
Genome.load_file
def load_file(self, fname, table=None, sep="\t", bins=False, indexes=None): """ use some of the machinery in pandas to load a file into a table Parameters ---------- fname : str filename or filehandle to load table : str table to load the file t...
python
def load_file(self, fname, table=None, sep="\t", bins=False, indexes=None): """ use some of the machinery in pandas to load a file into a table Parameters ---------- fname : str filename or filehandle to load table : str table to load the file t...
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train
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brentp/cruzdb
cruzdb/__init__.py
Genome.david_go
def david_go(refseq_list, annot=('SP_PIR_KEYWORDS', 'GOTERM_BP_FAT', 'GOTERM_CC_FAT', 'GOTERM_MF_FAT')): """ open a web-browser to the DAVID online enrichment tool Parameters ---------- refseq_list : list list of refseq names ...
python
def david_go(refseq_list, annot=('SP_PIR_KEYWORDS', 'GOTERM_BP_FAT', 'GOTERM_CC_FAT', 'GOTERM_MF_FAT')): """ open a web-browser to the DAVID online enrichment tool Parameters ---------- refseq_list : list list of refseq names ...
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open a web-browser to the DAVID online enrichment tool Parameters ---------- refseq_list : list list of refseq names to check for enrichment annot : list iterable of DAVID annotations to check for enrichment
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train
https://github.com/brentp/cruzdb/blob/9068d46e25952f4a929dde0242beb31fa4c7e89a/cruzdb/__init__.py#L231-L248
brentp/cruzdb
cruzdb/__init__.py
Genome.bin_query
def bin_query(self, table, chrom, start, end): """ perform an efficient spatial query using the bin column if available. The possible bins are calculated from the `start` and `end` sent to this function. Parameters ---------- table : str or table tabl...
python
def bin_query(self, table, chrom, start, end): """ perform an efficient spatial query using the bin column if available. The possible bins are calculated from the `start` and `end` sent to this function. Parameters ---------- table : str or table tabl...
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train
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brentp/cruzdb
cruzdb/__init__.py
Genome.upstream
def upstream(self, table, chrom_or_feat, start=None, end=None, k=1): """ Return k-nearest upstream features Parameters ---------- table : str or table table against which to query chrom_or_feat : str or feat either a chromosome, e.g. 'chr3' or a...
python
def upstream(self, table, chrom_or_feat, start=None, end=None, k=1): """ Return k-nearest upstream features Parameters ---------- table : str or table table against which to query chrom_or_feat : str or feat either a chromosome, e.g. 'chr3' or a...
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train
https://github.com/brentp/cruzdb/blob/9068d46e25952f4a929dde0242beb31fa4c7e89a/cruzdb/__init__.py#L291-L321
brentp/cruzdb
cruzdb/__init__.py
Genome.knearest
def knearest(self, table, chrom_or_feat, start=None, end=None, k=1, _direction=None): """ Return k-nearest features Parameters ---------- table : str or table table against which to query chrom_or_feat : str or feat either a chromoso...
python
def knearest(self, table, chrom_or_feat, start=None, end=None, k=1, _direction=None): """ Return k-nearest features Parameters ---------- table : str or table table against which to query chrom_or_feat : str or feat either a chromoso...
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train
https://github.com/brentp/cruzdb/blob/9068d46e25952f4a929dde0242beb31fa4c7e89a/cruzdb/__init__.py#L355-L441
brentp/cruzdb
cruzdb/__init__.py
Genome.annotate
def annotate(self, fname, tables, feature_strand=False, in_memory=False, header=None, out=sys.stdout, parallel=False): """ annotate a file with a number of tables Parameters ---------- fname : str or file file name or file-handle tables : list ...
python
def annotate(self, fname, tables, feature_strand=False, in_memory=False, header=None, out=sys.stdout, parallel=False): """ annotate a file with a number of tables Parameters ---------- fname : str or file file name or file-handle tables : list ...
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train
https://github.com/brentp/cruzdb/blob/9068d46e25952f4a929dde0242beb31fa4c7e89a/cruzdb/__init__.py#L449-L484
brentp/cruzdb
cruzdb/__init__.py
Genome.bins
def bins(start, end): """ Get all the bin numbers for a particular interval defined by (start, end] """ if end - start < 536870912: offsets = [585, 73, 9, 1] else: raise BigException offsets = [4681, 585, 73, 9, 1] binFirstShift...
python
def bins(start, end): """ Get all the bin numbers for a particular interval defined by (start, end] """ if end - start < 536870912: offsets = [585, 73, 9, 1] else: raise BigException offsets = [4681, 585, 73, 9, 1] binFirstShift...
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train
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brentp/cruzdb
cruzdb/__init__.py
Genome.save_bed
def save_bed(cls, query, filename=sys.stdout): """ write a bed12 file of the query. Parameters ---------- query : query a table or query to save to file filename : file string or filehandle to write output """ out = _open(filename...
python
def save_bed(cls, query, filename=sys.stdout): """ write a bed12 file of the query. Parameters ---------- query : query a table or query to save to file filename : file string or filehandle to write output """ out = _open(filename...
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train
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peterbe/django-static
django_static/templatetags/django_static.py
staticfile_node
def staticfile_node(parser, token, optimize_if_possible=False): """For example: {% staticfile "/js/foo.js" %} or {% staticfile "/js/foo.js" as variable_name %} Or for multiples: {% staticfile "/foo.js; /bar.js" %} or {% staticfile "/foo.js; /bar.js" as varia...
python
def staticfile_node(parser, token, optimize_if_possible=False): """For example: {% staticfile "/js/foo.js" %} or {% staticfile "/js/foo.js" as variable_name %} Or for multiples: {% staticfile "/foo.js; /bar.js" %} or {% staticfile "/foo.js; /bar.js" as varia...
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For example: {% staticfile "/js/foo.js" %} or {% staticfile "/js/foo.js" as variable_name %} Or for multiples: {% staticfile "/foo.js; /bar.js" %} or {% staticfile "/foo.js; /bar.js" as variable_name %}
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peterbe/django-static
django_static/templatetags/django_static.py
_mkdir
def _mkdir(newdir): """works the way a good mkdir should :) - already exists, silently complete - regular file in the way, raise an exception - parent directory(ies) does not exist, make them as well """ if os.path.isdir(newdir): pass elif os.path.isfile(newdir): ...
python
def _mkdir(newdir): """works the way a good mkdir should :) - already exists, silently complete - regular file in the way, raise an exception - parent directory(ies) does not exist, make them as well """ if os.path.isdir(newdir): pass elif os.path.isfile(newdir): ...
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peterbe/django-static
django_static/templatetags/django_static.py
_find_filepath_in_roots
def _find_filepath_in_roots(filename): """Look for filename in all MEDIA_ROOTS, and return the first one found.""" for root in settings.DJANGO_STATIC_MEDIA_ROOTS: filepath = _filename2filepath(filename, root) if os.path.isfile(filepath): return filepath, root # havent found it in...
python
def _find_filepath_in_roots(filename): """Look for filename in all MEDIA_ROOTS, and return the first one found.""" for root in settings.DJANGO_STATIC_MEDIA_ROOTS: filepath = _filename2filepath(filename, root) if os.path.isfile(filepath): return filepath, root # havent found it in...
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Look for filename in all MEDIA_ROOTS, and return the first one found.
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train
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peterbe/django-static
django_static/templatetags/django_static.py
default_combine_filenames_generator
def default_combine_filenames_generator(filenames, max_length=40): """Return a new filename to use as the combined file name for a bunch of files. A precondition is that they all have the same file extension Given that the list of files can have different paths, we aim to use the most common path. ...
python
def default_combine_filenames_generator(filenames, max_length=40): """Return a new filename to use as the combined file name for a bunch of files. A precondition is that they all have the same file extension Given that the list of files can have different paths, we aim to use the most common path. ...
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Return a new filename to use as the combined file name for a bunch of files. A precondition is that they all have the same file extension Given that the list of files can have different paths, we aim to use the most common path. Example: /somewhere/else/foo.js /somewhere/bar.js /...
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train
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peterbe/django-static
django_static/templatetags/django_static.py
StaticFilesNode.render
def render(self, context): """inspect the code and look for files that can be turned into combos. Basically, the developer could type this: {% slimall %} <link href="/one.css"/> <link href="/two.css"/> {% endslimall %} And it should be reconsidered like this: ...
python
def render(self, context): """inspect the code and look for files that can be turned into combos. Basically, the developer could type this: {% slimall %} <link href="/one.css"/> <link href="/two.css"/> {% endslimall %} And it should be reconsidered like this: ...
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train
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