Datasets:
jblitzar
/
github-python

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# Read the input file
with open(in_file, 'r') as f:
for line in f:
identifier, go_id, score = line.strip().split()
data[identifier].append((go_id, float(score)))
# Open the output file
with open(out_file, 'w') as w:
for identifier, go_terms in data.items():
go_set = set([x[0] for x in go_terms])
scores = {x[0]: x[1] for x in go_terms}
# Filter out ancestors
for go_id in list(go_set):
ancestors = go.get_ancestors(go_id)
ancestors.discard(go_id)
go_set -= ancestors
# Write to the output file
for go_id in go_set:
w.write(f"{identifier}\t{go_id}\t{scores[go_id]:.3f}\n")
if __name__ == '__main__':
main()
# <FILESEP>
import sys
try:
from django.conf import settings
settings.configure(
DEBUG=True,
LANGUAGE_CODE='en-us',
USE_TZ=True,
DATABASES={
'default': {
'ENGINE': 'django.db.backends.sqlite3',
'NAME': 'djangocms_forms',
}
},
ROOT_URLCONF='djangocms_forms.urls',
INSTALLED_APPS=[
'django.contrib.auth',
'django.contrib.contenttypes',
'django.contrib.sites',
'djangocms_forms',
],
SITE_ID=1,
NOSE_ARGS=['-s'],
)
try:
import django
setup = django.setup
except AttributeError:
pass
else:
setup()
from django_nose import NoseTestSuiteRunner
except ImportError:
import traceback
traceback.print_exc()
raise ImportError('To fix this error, run: pip install -r requirements-test.txt')
def run_tests(*test_args):
if not test_args:
test_args = ['tests']
# Run tests
test_runner = NoseTestSuiteRunner(verbosity=1)
failures = test_runner.run_tests(test_args)
if failures:
sys.exit(failures)
if __name__ == '__main__':
run_tests(*sys.argv[1:])
# <FILESEP>
from math import ceil, log2
from taglexicon import hash32trans, hash64trans
from fasthash import hash32, hash64
from form import Lookup
class WCLexicon:
def __init__(self, name, items, config):
config.wclexicons.append(self)
self.items = items
self.lower = False
self.name = name
self.config = config
self.c_size = '%s_size' % name