Datasets:

---

jbenbudd

/

adpr-llama-data

like 0

Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 4 new columns ({'Unnamed: 10', 'Unnamed: 11', 'Unnamed: 9', 'Unnamed: 8'}) and 5 missing columns ({'original_id', 'window_end', 'window_start', 'has_ptm', 'ptm_binary_mask'}).

This happened while the csv dataset builder was generating data using

hf://datasets/jbenbudd/adpr-llama-data/adpr_sites_test.csv (at revision 64fd9eedcfde63063a04c9d2fee2b04d92ece757), [/tmp/hf-datasets-cache/medium/datasets/54853297152786-config-parquet-and-info-jbenbudd-adpr-llama-data-5c8d66e5/hub/datasets--jbenbudd--adpr-llama-data/snapshots/64fd9eedcfde63063a04c9d2fee2b04d92ece757/adpr_sites_test.csv (origin=hf://datasets/jbenbudd/adpr-llama-data@64fd9eedcfde63063a04c9d2fee2b04d92ece757/adpr_sites_test.csv)]

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1887, in _prepare_split_single
                  writer.write_table(table)
                File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 675, in write_table
                  pa_table = table_cast(pa_table, self._schema)
                             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2272, in table_cast
                  return cast_table_to_schema(table, schema)
                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2218, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              Uniprot_ID: string
              ADPriboDB_ID: string
              PMID: int64
              ADPr_binding_sites: string
              seq_description: string
              seq_sequence: string
              binary_mask: string
              seq_length: int64
              Unnamed: 8: double
              Unnamed: 9: double
              Unnamed: 10: double
              Unnamed: 11: double
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 1727
              to
              {'original_id': Value('float64'), 'window_start': Value('int64'), 'window_end': Value('int64'), 'seq_sequence': Value('string'), 'seq_length': Value('int64'), 'ADPr_binding_sites': Value('string'), 'ptm_binary_mask': Value('uint64'), 'has_ptm': Value('int64'), 'Uniprot_ID': Value('string'), 'ADPriboDB_ID': Value('string'), 'PMID': Value('int64'), 'seq_description': Value('string'), 'binary_mask': Value('string')}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1347, in compute_config_parquet_and_info_response
                  parquet_operations = convert_to_parquet(builder)
                                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 980, in convert_to_parquet
                  builder.download_and_prepare(
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 884, in download_and_prepare
                  self._download_and_prepare(
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 947, in _download_and_prepare
                  self._prepare_split(split_generator, **prepare_split_kwargs)
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1736, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                                               ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1889, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 4 new columns ({'Unnamed: 10', 'Unnamed: 11', 'Unnamed: 9', 'Unnamed: 8'}) and 5 missing columns ({'original_id', 'window_end', 'window_start', 'has_ptm', 'ptm_binary_mask'}).
              
              This happened while the csv dataset builder was generating data using
              
              hf://datasets/jbenbudd/adpr-llama-data/adpr_sites_test.csv (at revision 64fd9eedcfde63063a04c9d2fee2b04d92ece757), [/tmp/hf-datasets-cache/medium/datasets/54853297152786-config-parquet-and-info-jbenbudd-adpr-llama-data-5c8d66e5/hub/datasets--jbenbudd--adpr-llama-data/snapshots/64fd9eedcfde63063a04c9d2fee2b04d92ece757/adpr_sites_test.csv (origin=hf://datasets/jbenbudd/adpr-llama-data@64fd9eedcfde63063a04c9d2fee2b04d92ece757/adpr_sites_test.csv)]
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)