text stringlengths 12 1.05M | repo_name stringlengths 5 86 | path stringlengths 4 191 | language stringclasses 1
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import unittest
import vtk
from vtk.test import Testing
testInt = 12
testString = "test string"
testFloat = 5.4
class VTKPythonObjectCalldataInvokeEventTest(Testing.vtkTest):
@vtk.calldata_type(vtk.VTK_INT)
def callbackInt(self, caller, event, calldata):
self.calldata = calldata
@vtk.calldata_... | SimVascular/VTK | Common/Core/Testing/Python/TestInvokeEvent.py | Python | bsd-3-clause | 1,832 | [
"VTK"
] | d1b664bdce8a6c9477b47665d4b67a207365c7b68c739ed5550abffed05357ed |
#!/usr/bin/env python
#
# Copyright 2013 The Chromium Authors. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
"""Convert Android xml resources to API 14 compatible.
There are two reasons that we cannot just use API 17 attributes,
so we are ge... | gfreed/android_external_chromium-org | build/android/gyp/generate_v14_compatible_resources.py | Python | bsd-3-clause | 13,424 | [
"Galaxy"
] | 014f3ffe27dfd703328345ed6254875b078890815919864a0f63032726ec4a07 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
import unittest
from util import merge_path, remove_trailing_junk, is_repeated_path, merge_href
from tokenizer import Tokenizer
class TestUtil(unittest.TestCase):
@unittest.skip('skip')
def test_merge_path(self):
self.assertEqual('/about/annualreport/index.ph... | jwlin/ir-proj3 | test_util.py | Python | mit | 6,453 | [
"VisIt"
] | 51d3c3060a591aa14eb15b093c4bfeadb7e1da93f71cd7209926cf2588c97311 |
"""
Instructor Dashboard Views
"""
import logging
import datetime
from opaque_keys import InvalidKeyError
from opaque_keys.edx.keys import CourseKey
import uuid
import pytz
from django.contrib.auth.decorators import login_required
from django.views.decorators.http import require_POST
from django.utils.translation imp... | nikolas/edx-platform | lms/djangoapps/instructor/views/instructor_dashboard.py | Python | agpl-3.0 | 28,063 | [
"VisIt"
] | 101693460caadfd46bd90faf9cc1e8cb016868c99aecc4e2dfa5940728c56892 |
#! /usr/bin/env python
"""
print DCommands working directory
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
from DIRAC.Core.Utilities.DIRACScript import DIRACScript as Script
@Script()
def main():
from COMDIRAC.Interfaces import DSession
from... | DIRACGrid/COMDIRAC | src/COMDIRAC/Interfaces/scripts/dpwd.py | Python | gpl-3.0 | 831 | [
"DIRAC"
] | 7f48ceff70a87f6c82b4fcdfd21456d2a81a96152970e4d18a95970759b4b063 |
from pype.ast import *
from pype.symtab import *
from pype.lib_import import LibraryImporter
from pype.fgir import FGNodeType, FGNode, Flowgraph, FGIR
from pype.error import *
class SymbolTableVisitor(ASTVisitor):
'''
Visitor subclass to walk through a SymbolTable
'''
def __init__(self):
self... | Mynti207/cs207project | pype/translate.py | Python | mit | 7,247 | [
"VisIt"
] | cb4bf3c2cf2185f43d29344724f89a621bc6a7569207776f0a7dbcbe78cfb34d |
"""SCons.Tool.zip
Tool-specific initialization for zip.
There normally shouldn't be any need to import this module directly.
It will usually be imported through the generic SCons.Tool.Tool()
selection method.
"""
#
# Copyright (c) 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009 The SCons Foundation
#
# Permiss... | BenLand100/rat-pac | python/SCons/Tool/zip.py | Python | bsd-3-clause | 3,291 | [
"VisIt"
] | 76dc890be7931b5749b75359751f9df82253fc0f058e32c846ab31a434b39d14 |
# $Id$
#
# Copyright (C) 2007 by Greg Landrum
# All rights reserved
#
from rdkit import Chem,Geometry
from rdkit.Chem import AllChem
from rdkit.Chem.Subshape import SubshapeObjects
from rdkit.Chem.Subshape import BuilderUtils
import time,cPickle
#----------------------------------------------------------------------... | rdkit/rdkit-orig | rdkit/Chem/Subshape/SubshapeBuilder.py | Python | bsd-3-clause | 4,287 | [
"PyMOL",
"RDKit"
] | 80de31086289e4b6a1fc00588cc7705bf8159d377c6b8d0633d05d071023c947 |
# -*- coding: utf-8 -*-
import os
import sys
import httplib2
from apiclient.discovery import build
from oauth2client.file import Storage
from oauth2client.client import flow_from_clientsecrets
from oauth2client.tools import run_flow
CLIENT_SECRETS_FILE = 'client_secrets.json'
YOUTUBE_SCOPES = ["https://www.googleapis... | JohnPeel/Scooter | youtube.py | Python | gpl-3.0 | 1,378 | [
"VisIt"
] | 10740a5a46ef70333deb71bf9047b30beb30b892a27265fe367f20b0b80c8a40 |
# $HeadURL: $
''' ResourceManagementDB
Module that provides basic methods to access the ResourceManagementDB.
'''
from datetime import datetime
from DIRAC import S_OK, S_ERROR
from DIRAC.Core.Base.DB import DB
from DIRAC.ResourceStatus... | vmendez/DIRAC | ResourceStatusSystem/DB/ResourceManagementDB.py | Python | gpl-3.0 | 19,265 | [
"DIRAC"
] | 87b4e30fb6fd8f04ce3c2d2295fbf4a6bc0d54ec365a06055ba21bbec547a807 |
"""
The B{0install digest} command-line interface.
"""
# Copyright (C) 2011, Thomas Leonard
# See the README file for details, or visit http://0install.net.
from __future__ import print_function
import os, tempfile
from zeroinstall import SafeException, _
from zeroinstall.zerostore import manifest, unpack
from zero... | timdiels/0install | zeroinstall/cmd/digest.py | Python | lgpl-2.1 | 1,441 | [
"VisIt"
] | 99c7b05c7cabb3dd676081444ec4fbfc92c0d54ac9b011fc0e08d9e8998e17a8 |
import os
import glob
import sys
import warnings
import logging
import re
import subprocess
logger = logging.getLogger(__name__)
class NoSuchSensorError(Exception):
def __init__(self, port, type_id=None, name=None):
self.port = port
self.type_id = type_id
self.name =name
def __str__... | dan-ionut-fechete/ev3 | ev3/ev3dev.py | Python | apache-2.0 | 19,250 | [
"Amber"
] | 1a5df3d008a4adacea8c0ea5dd702e88a2d879eea345071fff3d4acde069e432 |
"""
Loadable.Loadable subclass
"""
# This file is part of Munin.
# Munin is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
# Munin is ... | munin/munin | munin/mod/intel.py | Python | gpl-2.0 | 9,500 | [
"Galaxy"
] | 527f3f388596406d68311a4b656184b7ac54403ad11ff82d003418c456904960 |
# -*- coding: utf-8 -*-
"""
End-to-end tests for the main LMS Dashboard (aka, Student Dashboard).
"""
import datetime
from nose.plugins.attrib import attr
from common.test.acceptance.tests.helpers import UniqueCourseTest, generate_course_key
from common.test.acceptance.fixtures.course import CourseFixture
from common.... | itsjeyd/edx-platform | common/test/acceptance/tests/lms/test_lms_dashboard.py | Python | agpl-3.0 | 12,711 | [
"VisIt"
] | 8d78cff8b1baf603e8f9eeafcf4f15f85d94c8f717319a905b0770fba9068c5d |
import sys
import six
import numpy as np
from json import dump, load
from contextlib import contextmanager
from collections import Counter, defaultdict
from subprocess import CalledProcessError
from pysam import (
AlignmentFile, CMATCH, CINS, CDEL, CREF_SKIP, CSOFT_CLIP, CHARD_CLIP, CPAD,
CEQUAL, CDIFF)
from... | acorg/dark-matter | dark/sam.py | Python | mit | 48,541 | [
"BWA",
"pysam"
] | 77a1d05680644447867155e2f38b460ca38ce84067ad054eaba085f53fe64dda |
#!/usr/bin/env python
# GM-PHD implementation in python by Dan Stowell.
# Based on the description in Vo and Ma (2006).
# (c) 2012 Dan Stowell and Queen Mary University of London.
# All rights reserved.
#
# NOTE: I AM NOT IMPLEMENTING SPAWNING, since I don't need it.
# It would be straightforward to add it - see the... | danstowell/gmphd | gmphd.py | Python | gpl-3.0 | 14,138 | [
"Gaussian"
] | a191f6c30b0122b01b04a97738240df416e236367a4d660bf40b4c9216679cc0 |
import ast
import astunparse
import inspect
from collections import OrderedDict
from functools import update_wrapper
from types import FunctionType, MethodType
from .exceptions import ArgumentError, RewritingError
from .matching import Var, push_context, matches, var
undefined = object()
class generator(object):
... | kyouko-taiga/stew | stew/core.py | Python | apache-2.0 | 14,774 | [
"VisIt"
] | 082e5fd2ad1dfae32903aabc51b0139cc1660d90ecb10445b4e22865b7ac1b09 |
import numpy as np
from mmd.molecule import Molecule
from mmd.realtime import RealTime
from mmd.utils.spectrum import genSpectra
hydrogen = """
0 1
H 0.0 0.0 0.0
H 0.0 0.0 0.74
"""
# init molecule and build integrals
mol = Molecule(geometry=hydrogen,basis='3-21G')
# do the SCF
mol.RHF()
# define the applied f... | jjgoings/McMurchie-Davidson | examples/real-time.py | Python | bsd-3-clause | 1,780 | [
"Gaussian"
] | b54aa1fa71de3cab8b26c05beec2c2f152da2456dcf3fc9bc2165c82479434be |
# -*- Mode: python; tab-width: 4; indent-tabs-mode:nil; coding: utf-8 -*-
# vim: tabstop=4 expandtab shiftwidth=4 softtabstop=4
""" Module: IntrinsicDistance
=========================
"""
from __future__ import print_function
from . import Observable
class IntrinsicDistance(Observable):
"""Initialize the intr... | Marcello-Sega/pytim | pytim/observables/intrinsic_distance.py | Python | gpl-3.0 | 2,139 | [
"MDAnalysis"
] | db9395528bc2fe3e437522ee6501a10e193d4a37514f0d5ecd9696e88ecf3784 |
#
# Brian C. Lane <bcl@redhat.com>
#
# Copyright 2012 Red Hat, Inc.
#
# This copyrighted material is made available to anyone wishing to use, modify,
# copy, or redistribute it subject to the terms and conditions of the GNU
# General Public License v.2. This program is distributed in the hope that it
# will be useful,... | jikortus/pykickstart | pykickstart/commands/unsupported_hardware.py | Python | gpl-2.0 | 1,844 | [
"Brian"
] | 6ba1ebe5128f8e94e9aebf93b045066ad07d92a0c2153c6c6f221b0b38d171b6 |
######################################################################
# Copyright (C) 2014 Jaakko Luttinen
#
# This file is licensed under Version 3.0 of the GNU General Public
# License. See LICENSE for a text of the license.
######################################################################
####################... | nipunreddevil/bayespy | bayespy/inference/vmp/nodes/gaussian_wishart.py | Python | gpl-3.0 | 10,240 | [
"Gaussian"
] | 6ca6896295685f4a365a9eb296596a332db1adb8fa82db504138810e28ab8713 |
################################################################################
# Peach - Computational Intelligence for Python
# Jose Alexandre Nalon
#
# This file: tutorial/k-means.py
# Example of using K-Means implementation
################################################################################
# We impo... | PaulGrimal/peach | tutorial/neural-networks/k-means.py | Python | lgpl-2.1 | 2,833 | [
"Gaussian"
] | db50d71ff53ab2e4a06c774157e2560dcd3739600adbb5e9722c2b3cd6c9b062 |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2000-2006 Donald N. Allingham
# Copyright (C) 2005-2009 Serge Noiraud
# Copyright (C) 2007-2009 Brian G. Matherly
# Copyright (C) 2010 Peter Landgren
# Copyright (C) 2010 Jakim Friant
# Copyright (C) 2011 Adam Stein <adam@csh.rit.e... | arunkgupta/gramps | gramps/plugins/docgen/odfdoc.py | Python | gpl-2.0 | 73,332 | [
"Brian"
] | f70e32ba900ef25c7c9af132ab8fd3b148e88777439a9f6ae76fc7c31e74391a |
from disco.core import Job, result_iterator
def read_coverage_map(rec, params):
ref, read = rec
yield '%s:%d' % (ref, read.pos), read.qlen
def chr_partition(key, nrp, params):
chr = key.split(':')[0]
if chr == 'X': return 24
elif chr == 'Y': return 25
elif chr == 'MT': return 0
... | ContinuumIO/Examples | 1000Genomes/MapReduce_1000Genomes.py | Python | mit | 2,652 | [
"BWA",
"pysam"
] | 12b1035c8a73bad4ff8aa97a6ca40cbb4e2739b8c4d165f3051ce70307d2bd9f |
from __future__ import division, unicode_literals, absolute_import
import os, tempfile, copy, math, itertools, sys
import numpy as np
from operator import itemgetter
from itertools import product
try:
import scipy
except:
print('functions.py: no scipy, smoother() will not work()')
from siman import header
... | dimonaks/siman | siman/functions.py | Python | gpl-2.0 | 29,756 | [
"LAMMPS",
"VASP"
] | 461a7e2bd315d5579b567472a8af4b1ef9247d525078e4b08e61d9e97d0028b1 |
"""
FROWNS LICENSE
Copyright (c) 2001-2003, Brian Kelley
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are
met:
* Redistributions of source code must retain the above copyright
notice, t... | ubccr/pinky | pinky/smiles/builder.py | Python | bsd-2-clause | 8,899 | [
"Brian"
] | 1c5476cdb4978c71d6f7425277707818903ec04af009b5a38c8899d8a82c4575 |
#!/usr/local/bin/python
# Copyright (C) 2004 Rune Linding & Lars Juhl Jensen - EMBL
# The DisEMBL is licensed under the GPL license
# (http://www.opensource.org/licenses/gpl-license.php)
# DisEMBL pipeline
# Modified to work with current versions of Biopython (1.7+)
# by Shyam Saladi (saladi1@illinois.edu), Janauary 2... | whysgeff/DisEMBL-1.4 | DisEMBL.py | Python | gpl-2.0 | 6,507 | [
"Biopython"
] | cd23f7c89fe17355b77005f3bff51153a0d4f7a417bf8c2c094107f0f258624b |
### want to look at concatenating the R1 and R2 for 16s so that I can align and then cluster them....
import sys
file1=sys.argv[1]
file2=sys.argv[2]
file3=sys.argv[3]
def file_len_fasta(fname):
with open(fname) as f:
for i, l in enumerate(f):
pass
return (i + 1)/2
import itertools
from... | jooolia/phylo_temporal_jericho | sequence_processing/concatenate_R1_and_R2_for_non_merging_primers.py | Python | mit | 1,815 | [
"Biopython"
] | e46463a4249668049f1f2636787d6a6f1be42cedd47014a466e9f3b77753d76f |
# Copyright 2008 Brian Boyer, Ryan Mark, Angela Nitzke, Joshua Pollock,
# Stuart Tiffen, Kayla Webley and the Medill School of Journalism, Northwestern
# University.
#
# This file is part of Crunchberry Pie.
#
# Crunchberry Pie is free software: you can redistribute it and/or modify
# it under the terms of the GNU Gene... | brianboyer/newsmixer | social/facebook_templates.py | Python | gpl-3.0 | 8,098 | [
"Brian"
] | 40c23b22f55f2864966302227c4178fb2002957808df350bfe2b71382cc89286 |
'''
Created on Apr 22, 2015
'''
import py2bash.base.node as base
__author__ = "Eugene Kondrashev"
__copyright__ = "Copyright 2015, Eugene Kondrashev"
__credits__ = ["Eugene Kondrashev"]
__license__ = "MIT"
__version__ = "0.0.1"
__maintainer__ = "Eugene Kondrashev"
__email__ = "eugene.kondrashev@gmail.com"
__status__ ... | ekondrashev/py2bash | py2bash/optimized/memory/node.py | Python | mit | 1,382 | [
"VisIt"
] | 3d5c1fc71b7d32dd233876d08f122f72578f732da39f1031f8c0107adafa03c2 |
#!/usr/bin/env python
'''
Monitor the aosn web site for new realtime data from Tethys and use
DAPloaders.py to load new data into the stoqs_realtime database.
Mike McCann
MBARI 17 May 2011
'''
import os
import sys
sys.path.insert(0, os.path.join(os.path.dirname(__file__), "../../"))
if 'DJANGO_SETTINGS_MODULE' not in... | stoqs/stoqs | stoqs/loaders/CANON/realtime/monitorTethys.py | Python | gpl-3.0 | 10,723 | [
"VisIt"
] | 6b4692c74c8fbe13d027228deae4ce795be1a52c7903c723a11bda2dc826852d |
"""
This module defines the building blocks of a CP2K input file. The cp2k input structure is essentially a collection
of "sections" which are similar to dictionary objects that activate modules of the cp2k executable, and then
"keywords" which adjust variables inside of those modules. For example, FORCE_EVAL section w... | materialsproject/pymatgen | pymatgen/io/cp2k/inputs.py | Python | mit | 64,419 | [
"CP2K",
"Gaussian",
"MOPAC",
"VASP",
"pymatgen"
] | 0a81b487b47e06e71d16df4642d4e0491dfaaef41cef6029d214fdd4fb8c31fe |
"""
========================================
Special functions (:mod:`scipy.special`)
========================================
.. module:: scipy.special
Nearly all of the functions below are universal functions and follow
broadcasting and automatic array-looping rules. Exceptions are
noted.
.. seealso::
`scipy.s... | bkendzior/scipy | scipy/special/__init__.py | Python | bsd-3-clause | 26,955 | [
"Gaussian"
] | 7b7126c6b6f82b7969121dbd5c2dff424ff6a7600ab4943707a0c24016362d35 |
from django.core.management.base import BaseCommand
from django.contrib.auth.models import User
from txtalert.core.models import (Patient, Clinic, MSISDN,
VISIT_STATUS_CHOICES, Visit)
from optparse import make_option
from django.utils import timezone
from datetime import datetime, ti... | praekelt/txtalert | txtalert/apps/bookings/management/commands/create_bookings_sample_data.py | Python | gpl-3.0 | 4,735 | [
"VisIt"
] | 78fc9e34f1e2f8072abd1127695452f7b3aab3ade95675571e93879b6b7abaa2 |
# -*- coding:utf-8 -*-
# Copyright (c) 2015, Galaxy Authors. All Rights Reserved
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
#
# Author: wangtaize@baidu.com
# Date: 2015-04-30
import rpc_server
import thread
import socket
import time
import threading
from galaxy... | fxsjy/galaxy | test/integeration/agent.py | Python | bsd-3-clause | 2,935 | [
"Galaxy"
] | bba4d5ad501ce7acf48676f80bdbc6043699375918a993b8563954ec98e9a23d |
from __future__ import print_function, division
import copy
from collections import defaultdict
from sympy.core.containers import Dict
from sympy.core.compatibility import is_sequence, as_int
from sympy.core.singleton import S
from sympy.functions.elementary.miscellaneous import sqrt
from sympy.utilities.exceptions i... | hrashk/sympy | sympy/matrices/sparse.py | Python | bsd-3-clause | 42,913 | [
"DIRAC"
] | 645d9908b7b9e2cb791022f652fc59e4db64b047451addf52a74c62b08bc7389 |
""" Test the FTS3Utilities"""
from DIRAC.DataManagementSystem.Client.FTS3File import FTS3File
from DIRAC import S_OK, S_ERROR
__RCSID__ = "$Id $"
import unittest
import mock
import datetime
from DIRAC.DataManagementSystem.private.FTS3Utilities import FTS3JSONDecoder, \
FTS3Serializable, \
groupFilesByTarget,... | fstagni/DIRAC | DataManagementSystem/private/test/Test_FTS3Utilities.py | Python | gpl-3.0 | 8,312 | [
"DIRAC"
] | b07ca6d807b395b5348437cc72dc6dcd92f6a1832f78b721d14c4128873513e3 |
import numpy as np
import scipy
import time as ttime
import logging
logger = logging.getLogger(__name__)
# =================================================================================
# The following set of functions are separated from the rest of the program
# and prepared to be moved to scikit-beam (skbeam... | NSLS-II-HXN/PyXRF | pyxrf/core/utils.py | Python | bsd-3-clause | 10,665 | [
"Gaussian"
] | df27f7dcd2cba3443c4e7896291944db313aebd39160ae189aa93cca1877a994 |
# mako/ast.py
# Copyright (C) 2006-2011 the Mako authors and contributors <see AUTHORS file>
#
# This module is part of Mako and is released under
# the MIT License: http://www.opensource.org/licenses/mit-license.php
"""utilities for analyzing expressions and blocks of Python
code, as well as generating Python from A... | theguardian/LazyLibrarian_Old | mako/ast.py | Python | gpl-3.0 | 5,565 | [
"VisIt"
] | de3944168a14d2b22556fd3fa947b94f3b7c0ff8034f0505ee77f2f6d40bde66 |
""" Meager code path measurement tool.
Ned Batchelder
http://nedbatchelder.com/blog/200803/python_code_complexity_microtool.html
MIT License.
"""
from __future__ import with_statement
import optparse
import sys
import tokenize
from collections import defaultdict
try:
import ast
from ast import ite... | arju88nair/projectCulminate | venv/lib/python3.5/site-packages/mccabe.py | Python | apache-2.0 | 10,693 | [
"VisIt"
] | 5cf332c1d42c846ff99d28dc91bf8eccdaa7090b9742fcb71530a5b292b01900 |
# -*- coding: utf-8 -*-
# Copyright 2019 The GraphicsFuzz Project Authors
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# https://www.apache.org/licenses/LICENSE-2.0
#
# Unless requi... | google/graphicsfuzz | gfauto/gfauto/result_util.py | Python | apache-2.0 | 1,974 | [
"Amber"
] | e74672171e592a0616760637b4b8770cfe1d8ff73bbf3a58d1d7b99503ec50ed |
"""
==========================================================================
Illustration of prior and posterior Gaussian process for different kernels
==========================================================================
This example illustrates the prior and posterior of a GPR with different
kernels. Mean, st... | chenyyx/scikit-learn-doc-zh | examples/zh/gaussian_process/plot_gpr_prior_posterior.py | Python | gpl-3.0 | 2,900 | [
"Gaussian"
] | 1d3dd2ca5ab1739069c0308e36246dabe29b5450e177854b808e75939e09c4ec |
"""
PySCeS - Python Simulator for Cellular Systems (http://pysces.sourceforge.net)
Copyright (C) 2004-2015 B.G. Olivier, J.M. Rohwer, J.-H.S Hofmeyr all rights reserved,
Brett G. Olivier (bgoli@users.sourceforge.net)
Triple-J Group for Molecular Cell Physiology
Stellenbosch University, South Africa.
Permiss... | asttra/pysces | pysces/PyscesConfig.py | Python | bsd-3-clause | 3,624 | [
"PySCeS"
] | 39b8eb131108d75b68dddbd65996d42f289968773aae6fd55bddacdfc02d4842 |
#
# @file TestAnnotationCopyAndClone.py
# @brief Test the copy and clone methods for annotation classes
#
# @author Akiya Jouraku (Python conversion)
# @author Sarah Keating
#
# ====== WARNING ===== WARNING ===== WARNING ===== WARNING ===== WARNING ======
#
# DO NOT EDIT THIS FILE.
#
# This file was generated ... | TheCoSMoCompany/biopredyn | Prototype/src/libsbml-5.10.0/src/bindings/python/test/annotation/TestAnnotationCopyAndClone.py | Python | bsd-3-clause | 8,732 | [
"VisIt"
] | e543b2023c657f78798b85e2234328485e75546c3e8455b2f0a18f52034e61f7 |
import matplotlib
#matplotlib.use('WXAgg')
from matplotlib import pyplot as pl #this is Python's main scientific plotting library.
from matplotlib import cm
import cv2 #computer vision library. interfaces with python over numpy arrays.
import numpy as np
from scipy import stats
from sys import argv #for command line a... | cmaass/swimmertracking | readtraces.py | Python | gpl-2.0 | 69,835 | [
"Gaussian"
] | 9b228fe964667f9443e10bfb4f689b750b3421fb8d8c0a80d8be96cd345ded02 |
# Code from Chapter 2 of Machine Learning: An Algorithmic Perspective (2nd Edition)
# by Stephen Marsland (http://stephenmonika.net)
# You are free to use, change, or redistribute the code in any way you wish for
# non-commercial purposes, but please maintain the name of the original author.
# This code comes with no... | Anderson-Lab/anderson-lab.github.io | csc_466_2021_spring/MLCode/Ch2/plotGaussian.py | Python | mit | 730 | [
"Gaussian"
] | bd0bfd057912d09eca113219d220370c98747c3886c6753e73b83894a576ee6c |
#! /usr/bin/env python
"""
list replicas for files in the FileCatalog
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import DIRAC
from DIRAC.Core.Utilities.DIRACScript import DIRACScript as Script
@Script()
def main():
from COMDIRAC.Interfaces im... | DIRACGrid/COMDIRAC | src/COMDIRAC/Interfaces/scripts/dreplicas.py | Python | gpl-3.0 | 1,753 | [
"DIRAC"
] | 1df41d27b5ce3a660533054e0ced77068d87328c25da580b73e86e9e6df593d2 |
#
#
# File to test current configuration of GranuleCell project.
#
# To execute this type of file, type '..\..\..\nC.bat -python XXX.py' (Windows)
# or '../../../nC.sh -python XXX.py' (Linux/Mac). Note: you may have to update the
# NC_HOME and NC_MAX_MEMORY variables in nC.bat/nC.sh
#
# Author: Padrai... | pgleeson/TestArea | models/VSCSGranCell/pythonScripts/RunTests.py | Python | gpl-2.0 | 2,810 | [
"NEURON"
] | ea7abec5ad49b1b63b3da826cf2cb5e801410971a619e81936533222523e9cff |
# -*- coding: utf-8 -*-
{
"'Cancel' will indicate an asset log entry did not occur": "' 취소 ' 자산 로그 항목을 표시합니다 발생하지 않았습니다．",
"A location that specifies the geographic area for this region. This can be a location from the location hierarchy, or a 'group location', or a location that has a boundary for the area.": "위치 이... | code-for-india/sahana_shelter_worldbank | languages/ko.py | Python | mit | 244,176 | [
"VisIt"
] | 36c424a7a9b94423adc4b2e42e41ca71cce10f4e10396c8274b9ee7442ed534c |
import os
from exceptions import TableException
import atpy
from decorators import auto_download_to_file, auto_decompress_to_fileobj, auto_fileobj_to_file
try:
import h5py
h5py_installed = True
except:
h5py_installed = False
def _check_h5py_installed():
if not h5py_installed:
raise Except... | stvoutsin/pyrothorn | pyrothorn/pyroquery/atpy/hdf5table.py | Python | gpl-3.0 | 8,820 | [
"VisIt"
] | 7bb5e07627560065d30cca1110c46472064cc169b33a844d253277086778528b |
import truetypetracer as ttt
import openvoronoi as ovd
import ovdvtk
import time
import vtk
def translate(segs, x, y):
out = []
for seg in segs:
seg2 = []
for p in seg:
p2 = []
p2.append(p[0] + x)
p2.append(p[1] + y)
seg2.append(p2)
#... | aewallin/openvoronoi | python_examples/ttt/ttt_3_alphabet.py | Python | lgpl-2.1 | 7,151 | [
"VTK"
] | 08c88dbd4ff4f1d485c76e37bd18d6183ff9548b650c991662aaffc26970ae62 |
#!/usr/bin/env python3
### Made by Ayden G.W for his ICS-201 Class.
### DUE: January 20th, 2017
# NOTE: Import all required packages.
import sys,os,random,time,platform
try:
import pyglet
except ModuleNotFoundError:
print("Run build.py first [Missing Pyglet]!")
sys.exit()
### REVIEW: Enhancements Complete... | MTadder/A-Dark-Forest | ADF.py | Python | mit | 25,115 | [
"ADF",
"VisIt"
] | 8ea6b1986c18e4ac73483c9c9c30bcccef3283bc07a67e18a7044aec52102182 |
"""
Test functions for stats module
"""
import warnings
import re
import sys
import pickle
from pathlib import Path
import os
import json
import platform
from numpy.testing import (assert_equal, assert_array_equal,
assert_almost_equal, assert_array_almost_equal,
as... | zerothi/scipy | scipy/stats/tests/test_distributions.py | Python | bsd-3-clause | 261,929 | [
"Gaussian"
] | 9ee666aff1a6c73b18d1f6dfc55e88a94047d9583d1a5dfa177d3f22cc33b8a1 |
# Mantid Repository : https://github.com/mantidproject/mantid
#
# Copyright © 2018 ISIS Rutherford Appleton Laboratory UKRI,
# NScD Oak Ridge National Laboratory, European Spallation Source
# & Institut Laue - Langevin
# SPDX - License - Identifier: GPL - 3.0 +
#pylint: disable=R0914,R0912,R0913
# Utility ... | mganeva/mantid | scripts/HFIR_4Circle_Reduction/fputility.py | Python | gpl-3.0 | 9,894 | [
"CRYSTAL"
] | 193f5b94db91604ffc6935a60d930ba61a6f10ebf8b353329da3f31b83f18c2a |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, print_function, unicode_literals, absolute_import
"""
This module implements classes for processing Lammps output files:
1. log file: contains the thermodynamic data with ... | aykol/pymatgen | pymatgen/io/lammps/output.py | Python | mit | 16,639 | [
"LAMMPS",
"pymatgen"
] | 65599feaeaa3deea68020337f0f7612a1309ae39d2a733c98468313c3d3e49d3 |
# -*- coding: utf-8 -*-
'''
This file is part of Arcte.
Arcte is software that simplifies the creation of 3D printable atomic structures,
with added features for the blind.
Copyright (C) 2015 Jesse Smith and contributors
Arcte is free software: you can redistribute it and/or modify
it under the terms of the GNU Gene... | jessedsmith/Arcte | modules/exportdialog.py | Python | gpl-3.0 | 21,348 | [
"VTK"
] | fec14b55a12bc33a51a5a7985f2cc8b95f540a97d180dee6d82933fd676f72c5 |
#!/usr/bin/env python
# -*- coding: utf8 -*-
# *****************************************************************
# ** PTS -- Python Toolkit for working with SKIRT **
# ** © Astronomical Observatory, Ghent University **
# *****************************************************************
##... | SKIRT/PTS | magic/services/ned.py | Python | agpl-3.0 | 13,315 | [
"Galaxy"
] | be174855715aef76470749019f04e0ba5412d908e251c8501b27cd201a4e40db |
#!/usr/bin/env python
#pylint: disable=missing-docstring
####################################################################################################
# DO NOT MODIFY THIS HEADER #
# MOOSE - Multiphysics Object Oriented Simu... | liuwenf/moose | python/MooseDocs/tests/common/database/test_link_database.py | Python | lgpl-2.1 | 3,508 | [
"MOOSE"
] | f101a4104d072d534a419dbba58d7b1af4a9db2da9f4f68fea940d547c52052d |
#-------------------------------------------------------------------------------
# coding=utf8
# Name: 模块1
# Purpose:
#
# Author: zhx
#
# Created: 19/05/2016
# Copyright: (c) zhx 2016
# Licence: <your licence>
#-------------------------------------------------------------------------------
import... | vimilimiv/weibo-popularity_judge-and-content_optimization | 分类和回归/svm.py | Python | mit | 1,941 | [
"Gaussian"
] | ce9c5ddbb3cbd7f34335ee0164263bc4986783574985981b70183a12dbd07f6f |
#!/usr/bin/env python3
#pylint: disable=missing-docstring
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
... | nuclear-wizard/moose | python/chigger/tests/colormap/reverse_default.py | Python | lgpl-2.1 | 691 | [
"MOOSE"
] | 047180fb4ff539d9342c0a9212374a0758aa55aceb6ac276ecbbff440f4f0b70 |
import ocl
import camvtk
import time
import vtk
import datetime
import math
import procmemory
# 2018.08: Weave not wrapped
def drawVertices(myscreen, weave, vertexType, vertexRadius, vertexColor):
pts = weave.getVertices( vertexType )
print(" got ",len(pts)," of type ", vertexType)
for p in pts:
m... | aewallin/opencamlib | examples/python/fiber/fiber_16_weave2_STL.py | Python | lgpl-2.1 | 4,894 | [
"VTK"
] | eedd644e3013a0132a64dfd853ccbb4c9d19d565c7364bd19ac5f4988eed458d |
# This file is part of OpenHatch.
# Copyright (C) 2010, 2011 OpenHatch, Inc.
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Affero General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any l... | jledbetter/openhatch | mysite/customs/profile_importers.py | Python | agpl-3.0 | 39,168 | [
"exciting"
] | db09f95c0cbf4b42269966e90b804598b469dabdf838cac5b8527eaa3c06779b |
import threading
import time
import uuid
from common.constants import gameModes, actions
from common.log import logUtils as log
from common.ripple import userUtils
from constants import exceptions
from constants import serverPackets
from events import logoutEvent
from helpers import chatHelper as chat
from objects imp... | osuripple/pep.py | objects/osuToken.py | Python | agpl-3.0 | 15,993 | [
"VisIt"
] | 2714760e1cbb10ee30c0dc3c2638a366dd3406bfda58d282c6daf1de42818f50 |
# -*- Mode: python; tab-width: 4; indent-tabs-mode:nil; coding:utf-8 -*-
# vim: tabstop=4 expandtab shiftwidth=4 softtabstop=4 fileencoding=utf-8
#
# MDAnalysis --- http://www.mdanalysis.org
# Copyright (c) 2006-2016 The MDAnalysis Development Team and contributors
# (see the file AUTHORS for the full list of names)
#
... | kain88-de/mdanalysis | testsuite/MDAnalysisTests/test_selections.py | Python | gpl-2.0 | 7,518 | [
"CHARMM",
"Gromacs",
"Jmol",
"MDAnalysis",
"PyMOL",
"VMD"
] | 1266fd4d7cff3ac4c99b256149cd12cd7cd2cdde8066151e88c30f92a4aeb1f4 |
from configparser import ConfigParser
import mpi4py
import numpy
from setuptools import setup, find_packages
from setuptools.extension import Extension
from Cython.Build import cythonize
lammps_config = ConfigParser()
lammps_config.read('lammps.cfg')
include_dirs = [
mpi4py.get_include(),
numpy.get_include(... | costrouc/lammps-python | setup.py | Python | gpl-3.0 | 1,558 | [
"LAMMPS"
] | e285e6718b1ca85572f9e0386d4a4de1dbe086bb063475772aa5b634b5db3f4b |
#!/usr/bin/env python
# File: plot_icd_mass.py
# Created on: Tue Jun 4 11:31:32 2013
# Last Change: Mon Jul 15 16:35:14 2013
# Purpose of script: <+INSERT+>
# Author: Steven Boada
import pylab as pyl
import cPickle as pickle
def plot_icd_vs_mass():
galaxies = pickle.load(open('galaxies.pickle','rb'))
#galaxi... | boada/ICD | sandbox/legacy_plot_code/plot_icd_mass.py | Python | mit | 2,607 | [
"Galaxy"
] | 1e699d79d7373361e4a5f32c3cd504089c88b7ee0b2c0fe824d11a0ebaf1bcc8 |
###########################################################################
#
# This program is part of Zenoss Core, an open source monitoring platform.
# Copyright (C) 2007, Zenoss Inc.
#
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License versi... | jcurry/ZenPacks.skills1st.deviceReports | ZenPacks/skills1st/deviceReports/ReportLoader.py | Python | gpl-2.0 | 2,863 | [
"VisIt"
] | 953540c979ae5aee3bdb3dcdb676bed0387c6ba8f0985523d4c96db4286cd8be |
""" Codes for Scattering by ISM
Based on formalism derived by Macquart & Koay 2013, ApJ, 776, 125
Modified by Prochaska & Neeleman 2017
"""
from __future__ import print_function, absolute_import, division, unicode_literals
import numpy as np
from scipy.special import gamma
from astropy import constants
from astr... | FRBs/DM | frb/turb_scattering.py | Python | bsd-3-clause | 13,651 | [
"Galaxy"
] | a414640eeb8ffc62561f6b14330246bd611cbb308a5d169a2819cc43b76fdac8 |
# -*- coding: utf-8 -*-
"""
solace.tests.link_check
~~~~~~~~~~~~~~~~~~~~~~~
A test that finds 404 links in the default templates.
:copyright: (c) 2010 by the Solace Team, see AUTHORS for more details.
:license: BSD, see LICENSE for more details.
"""
import re
import unittest
from urlparse import u... | mitsuhiko/solace | solace/tests/link_check.py | Python | bsd-3-clause | 2,159 | [
"VisIt"
] | 0788ee5ee8d0dc8528b2db10b8c41d805ebfb2f44e096e0ad1677b90ac7ded61 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
# ===========================================================================
# eXe
# Copyright 2012, Pedro Peña Pérez, Open Phoenix IT
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as publ... | exelearning/iteexe | exe/jsui/mainpage.py | Python | gpl-2.0 | 88,087 | [
"VisIt"
] | 122842ca3c7b1b4414ba003801a87f571e84a2ca777b9eb8b6877d37ea8334db |
# -*- coding: utf-8 -*-
# Copyright (C) Brian Moe (2013-2014), Duncan Macleod (2014-)
#
# This file is part of LIGO CIS Core.
#
# LIGO CIS Core is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 ... | lscsoft/cis.server | cisserver/middleware/ligodjangoauth.py | Python | gpl-3.0 | 7,145 | [
"Brian",
"MOE"
] | 04ee55f18d5dfec542ec5f85b877fb907c525eddeb955b4dbe5efa7831e655d6 |
# Copyright 2016 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | ppries/tensorflow | tensorflow/contrib/distributions/python/ops/mvn.py | Python | apache-2.0 | 28,684 | [
"Gaussian"
] | 9f36ec0b1260ab7401a33563277fd2b3f795af1347448a8a7cc47f2b53bef98a |
##############################################################################
# MDTraj: A Python Library for Loading, Saving, and Manipulating
# Molecular Dynamics Trajectories.
# Copyright 2012-2013 Stanford University and the Authors
#
# Authors: Christian Schwantes
# Contributors: Robert McGibbon
#
# MDTraj... | rmcgibbo/mdtraj | mdtraj/geometry/contact.py | Python | lgpl-2.1 | 13,688 | [
"MDTraj"
] | 063e3813afa745638247f97d1de8ed07e155b9ac6fe1f6b063fb19bc53afa2b6 |
import pandas as pd
from sklearn.ensemble import RandomForestClassifier
from sklearn.ensemble import GradientBoostingClassifier
from sklearn.ensemble import BaggingClassifier
from sklearn.ensemble import AdaBoostClassifier
from sklearn.ensemble import ExtraTreesClassifier
from sklearn.neural_network import MLPClassifie... | rupakc/Kaggle-Compendium | Porto Seguro Safe Driver Prediction/porto-baseline.py | Python | mit | 2,887 | [
"Gaussian"
] | 9514f5cd0e7eef03b98fd1aed62d8f2e6622def811d21e404e92edc6925a5746 |
# -*- coding: utf-8 -*-
"""
pysteps.nowcasts.sprog
======================
Implementation of the S-PROG method described in :cite:`Seed2003`
.. autosummary::
:toctree: ../generated/
forecast
"""
import numpy as np
import time
from pysteps import cascade
from pysteps import extrapolation
from pysteps import ... | pySTEPS/pysteps | pysteps/nowcasts/sprog.py | Python | bsd-3-clause | 15,968 | [
"Gaussian"
] | 7d0c9c53f0ee99433d83be79a456b6bfc972ee855c32afed4d04b04e0bd4789b |
"""
API operations on the contents of a history.
"""
from galaxy import exceptions
from galaxy import util
from galaxy.web import _future_expose_api as expose_api
from galaxy.web import _future_expose_api_anonymous as expose_api_anonymous
from galaxy.web import url_for
from galaxy.web.base.controller import BaseAPIC... | mikel-egana-aranguren/SADI-Galaxy-Docker | galaxy-dist/lib/galaxy/webapps/galaxy/api/history_contents.py | Python | gpl-3.0 | 25,537 | [
"Galaxy"
] | e2bce10d21366df73c85b8f7720a117ec948ed23790074311c2f838a3652ab54 |
"""Tools for managing evaluation contexts. """
from __future__ import print_function, division
from sympy.utilities.iterables import dict_merge
from sympy.polys.polyutils import PicklableWithSlots
__known_options__ = set(['frac', 'gens', 'wrt', 'sort', 'order', 'domain',
'modulus', 'gaussian', 'extension', 'fiel... | hrashk/sympy | sympy/polys/polycontext.py | Python | bsd-3-clause | 1,944 | [
"Gaussian"
] | 9f72372a4d377a838a5a149946714045a78bc32b7ed87615be5e6978a2da6f42 |
#
# @file TestAlgebraicRule.py
# @brief AlgebraicRule unit tests
#
# @author Akiya Jouraku (Python conversion)
# @author Ben Bornstein
#
# ====== WARNING ===== WARNING ===== WARNING ===== WARNING ===== WARNING ======
#
# DO NOT EDIT THIS FILE.
#
# This file was generated automatically by converting the file lo... | TheCoSMoCompany/biopredyn | Prototype/src/libsbml-5.10.0/src/bindings/python/test/sbml/TestAlgebraicRule.py | Python | bsd-3-clause | 4,067 | [
"VisIt"
] | d53a9c0eb3d887255839596a8e89f4c8d2b68193f66c34adaddb714b3c8bbc94 |
#
# Copyright (c) 2015 nexB Inc. and others. All rights reserved.
# http://nexb.com and https://github.com/nexB/scancode-toolkit/
# The ScanCode software is licensed under the Apache License version 2.0.
# Data generated with ScanCode require an acknowledgment.
# ScanCode is a trademark of nexB Inc.
#
# You may not use... | yashdsaraf/scancode-toolkit | src/cluecode/finder.py | Python | apache-2.0 | 15,886 | [
"VisIt"
] | 0d1218d0125fa7b9de35a46ef555e714eb4d99d1df3979ea788f4aa2e3da529d |
# Copyright (C) 2010 by Kevin Saff
# This file is part of the CA scanner.
# The CA scanner is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any la... | kcsaff/CA | src/formats/__init__.py | Python | gpl-3.0 | 4,524 | [
"MCell"
] | 7df54d141d09c1564411b83bb8161b42fc632fa3f7b1137d92f65d6895b8f836 |
# -*- coding: utf-8 -*-
# Copyright 2010 Dirk Holtwick, holtwick.it
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by ... | zulumarketing/html2pdf | xhtml2pdf/parser.py | Python | apache-2.0 | 25,758 | [
"VisIt"
] | 7282f2b4cf8cfa49a689be5fd108b2b2d0b5b4f066a9132b72420d822b3416d4 |
#!/usr/bin/python3
# -*- coding: utf-8 -*-
"""
IC-PCA2
Ice-crystal Classification with Pricipal Component Analysis
A complete rewrite in Python 3
Based on the original IC-PCA Matlab tool by Hannakaisa Lindqvist, Jussi Tiira
and Hanne Hakkarainen
@author: Jussi Tiira <jussi.tiira@helsinki.fi>
License: GPL v3
"""
imp... | juhi24/ic-pca2 | classify.py | Python | gpl-3.0 | 1,014 | [
"CRYSTAL"
] | 82bed5a9809938e1349e6611459e8382eb73c76a8949bc2692d567ca6d36b84c |
#!/usr/bin/env python
# Dan Blankenberg
import json
import logging
import optparse
import os
import shutil
import tempfile
from xml.etree.ElementTree import tostring
try:
# For Python 3.0 and later
from shutil import unpack_archive
except ImportError:
# Fall back to Python 2 import
from setuptools.arc... | mblue9/tools-iuc | data_managers/data_manager_manual/data_manager/data_manager_manual.py | Python | mit | 7,932 | [
"Galaxy"
] | d72d20b9ae4f8239c56d6b719612cc5f69afc88f3698862e3e4312fcc63f0a26 |
# class generated by DeVIDE::createDeVIDEModuleFromVTKObject
from module_kits.vtk_kit.mixins import SimpleVTKClassModuleBase
import vtk
class vtkDataSetReader(SimpleVTKClassModuleBase):
def __init__(self, module_manager):
SimpleVTKClassModuleBase.__init__(
self, module_manager,
vtk.... | nagyistoce/devide | modules/vtk_basic/vtkDataSetReader.py | Python | bsd-3-clause | 480 | [
"VTK"
] | 1206544f7faad7a5b82e25a0da6c8401a323dad7a4b0e7f0cbaa8ffed0527b6e |
from graphs import Graph
"""
find a sequence of moves that allow the knight to visit every square on the board exactly once.
"""
def knightGraph(bdsize):
ktGraph = Graph()
for row in range(bdsize):
for col in range(bdsize):
nodeId = posToNodeId(row, col, bdsize)
newPositions =... | vector8188/AlgorithmAnalysisPython | knightsTour.py | Python | mit | 1,047 | [
"VisIt"
] | cc7245708eb4d33458fac5e10bcc5dd92e0c63708f1bfe1807e122118adb5c1a |
# encoding: utf-8
"""Module for (annotated) unit housekeeping; see ``ModuleSIRegister``."""
from __future__ import division
import string
import si.math
from si.units import SIUnit, SICompoundUnit
class ModuleSIRegister(object):
"""In a module, create a ``_register = ModuleSIRegister(locals())`` and add define units... | chrysn/si | si/register.py | Python | bsd-2-clause | 4,102 | [
"Dalton"
] | 6e1513f8ac6204a25a02586d4c615eb24cae7b81ce35b0226d672874851a94d9 |
# -*- coding: utf-8 -*-
tex_nine_maths_cache = [
{"word": r"aleph", "menu": "ℵ"},
{"word": r"alpha", "menu": "α"},
{"word": r"amalg", "menu": "⨿"},
{"word": r"angle", "menu": "∠"},
{"word": r"approx", "menu": "≈"},
... | vim-scripts/TeX-9 | ftplugin/tex_nine/tex_nine_symbols.py | Python | gpl-3.0 | 10,868 | [
"Bowtie"
] | b8a92e047d4ba439534ec81bb80b395f69a64b72ed8dcd2332cb5c0586bd5409 |
from __future__ import print_function
from __future__ import unicode_literals
from builtins import str, bytes, dict, int
import os
import sys
sys.path.insert(0, os.path.join(os.path.dirname(__file__), "..", ".."))
from pattern.en import article, referenced
from pattern.en import pluralize, singularize
from pattern.e... | clips/pattern | examples/03-en/01-inflect.py | Python | bsd-3-clause | 3,915 | [
"Octopus"
] | e62ff2fbff3b7f3aeac10d7db9657ebe84cdbca737c7f245fb8d8c817cfd0094 |
#
# @file TestUnitKind.py
# @brief UnitKind enumeration unit tests
#
# @author Akiya Jouraku (Python conversion)
# @author Ben Bornstein
#
# ====== WARNING ===== WARNING ===== WARNING ===== WARNING ===== WARNING ======
#
# DO NOT EDIT THIS FILE.
#
# This file was generated automatically by converting the file ... | TheCoSMoCompany/biopredyn | Prototype/src/libsbml-5.10.0/src/bindings/python/test/sbml/TestUnitKind.py | Python | bsd-3-clause | 10,570 | [
"VisIt"
] | f09225b1c946823d7dd80db6c124e0de8529a79d3580b19f49e2b26f7eaf3180 |
# emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*-
# vi: set ft = python sts = 4 ts = 4 sw = 4 et:
"""ANTS Apply Transforms interface
Change directory to provide relative paths for doctests
>>> import os
>>> filepath = os.path.dirname( os.path.realpath( __file__ ) )
>>> datadir = os.... | FredLoney/nipype | nipype/interfaces/ants/resampling.py | Python | bsd-3-clause | 16,542 | [
"Gaussian"
] | 7d92f3c2ea8f20360960b6d54e4ac26ae376c06b01ba984ffdae6fb1d626f7e1 |
""" codecs -- Python Codec Registry, API and helpers.
Written by Marc-Andre Lemburg (mal@lemburg.com).
(c) Copyright CNRI, All Rights Reserved. NO WARRANTY.
"""
import builtins
import sys
### Registry and builtin stateless codec functions
try:
from _codecs import *
except ImportError as why:
raise System... | brython-dev/brython | www/src/Lib/codecs.py | Python | bsd-3-clause | 36,672 | [
"FEFF"
] | 49b4ee951cb4ffc1fcb6b5497888952191dd62337c03ec8475e954dbcad5f0f2 |
from framework.utils import OWTFLogger
from framework.dependency_management.dependency_resolver import ServiceLocator
"""
This plugin does not perform ANY test: The aim is to visit all URLs grabbed so far and build the transaction log to feed data to other plugins
NOTE: This is an active plugin because it may visit UR... | sharad1126/owtf | plugins/web/active/Visit_URLs@OWTF-WSP-001.py | Python | bsd-3-clause | 988 | [
"VisIt"
] | 89351284615eb8bfd7d4a078b15d3d64e30b44aba17a7839026df8bcda12c2ff |
import requests
import utils
CLIENT_ID = "dAhCaXVVvRdCjh7BcA"
CLIENT_SECRET = "JvuwZv9NPgV6E5MqzW8Lfb3FgjLpNFzK"
REPO_UUID = None
def get_auth_url():
return "https://bitbucket.org/site/oauth2/authorize?client_id={0}&response_type=code".format(CLIENT_ID)
def is_logged_in(repo_uuid):
try:
if repo_... | varunagrawal/ClassNotes | notes/bitbucket.py | Python | mit | 2,614 | [
"VisIt"
] | bf68915fd66aed2f967f4d3210160389185c0bdae61a4e224c1ee3dcb068b52c |
import numpy as np
from bayesnet.array.broadcast import broadcast_to
from bayesnet.math.exp import exp
from bayesnet.math.log import log
from bayesnet.math.sqrt import sqrt
from bayesnet.math.square import square
from bayesnet.random.random import RandomVariable
from bayesnet.tensor.constant import Constant
from bayesn... | ctgk/BayesianNetwork | bayesnet/random/gaussian_mixture.py | Python | mit | 3,939 | [
"Gaussian"
] | 50a6f76e42b2a68c5f6b5fe7c3e75fa9b05a8525aec45fa609c23a8e8200f3be |
# -*- coding: iso-8859-1 -*-
"""
MoinMoin - feed some FCKeditor dialogues
@copyright: 2005-2006 Bastian Blank, Florian Festi, Thomas Waldmann
@license: GNU GPL, see COPYING for details.
"""
from MoinMoin import config, wikiutil
from MoinMoin.action.AttachFile import _get_files
from MoinMoin.Page... | Glottotopia/aagd | moin/local/moin/build/lib.linux-x86_64-2.6/MoinMoin/action/fckdialog.py | Python | mit | 20,690 | [
"VisIt"
] | 313fbed966be153e5e59a7d66906c5f9b30541f6a8df2df95d97c00168526957 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
Created on Mar 18, 2012
"""
__author__ = "Shyue Ping Ong"
__copyright__ = "Copyright 2012, The Materials Project"
__version__ = "0.1"
__maintainer__ = "Shyue Ping Ong"
__email__ = "shyue@mit.edu"
__date_... | gVallverdu/pymatgen | pymatgen/apps/borg/tests/test_queen.py | Python | mit | 1,250 | [
"pymatgen"
] | 4c5f26d4499235df56cdb490ba9c2c6f77493d92598b5d8c6cf3b2ee8901cd48 |
"""
=====================================
SGDOneClassSVM benchmark
=====================================
This benchmark compares the :class:`SGDOneClassSVM` with :class:`OneClassSVM`.
The former is an online One-Class SVM implemented with a Stochastic Gradient
Descent (SGD). The latter is based on the LibSVM implementa... | glemaitre/scikit-learn | benchmarks/bench_online_ocsvm.py | Python | bsd-3-clause | 9,395 | [
"Gaussian"
] | d1bef8a8a654def98d6574ea14a0b84ae402e1b5e4a11438d6f43459a5bb7203 |
from django.shortcuts import redirect, render
from django.contrib.auth.decorators import login_required
from django.views import generic
from django.views.generic.edit import DeleteView, UpdateView, CreateView
from django.core.urlresolvers import reverse_lazy
from django.contrib import messages
from .models import Cli... | dwagon/Scheduler | scheduler/client/views.py | Python | gpl-2.0 | 3,326 | [
"VisIt"
] | de2920f7d3fdf59a82bb61e98f2d04a456d06e4272f47ff8918d7c26589c73f9 |
# -*- coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2011-2012 Async Open Source
##
## This program is free software; you can redistribute it and/or
## modify it under the terms of the GNU Lesser General Public License
## as published by the Free Software Foundation; either version 2
## of the Licens... | andrebellafronte/stoq | stoqlib/api.py | Python | gpl-2.0 | 8,524 | [
"VisIt"
] | 6058eeafbb77711e3c9d2342b4cd2b6138135fe881a8a68a15d3d3a97e692bde |
# Copyright 2009 Brian Quinlan. All Rights Reserved.
# Licensed to PSF under a Contributor Agreement.
import collections
import logging
import threading
import itertools
import time
__author__ = 'Brian Quinlan (brian@sweetapp.com)'
FIRST_COMPLETED = 'FIRST_COMPLETED'
FIRST_EXCEPTION = 'FIRST_EXCEPTION'
ALL_COMPLETED... | bbfamily/abu | abupy/ExtBu/futures/_base.py | Python | gpl-3.0 | 21,108 | [
"Brian"
] | 8c96eee148e5ad8f210f0af733005998074d2ad43af296f718be1df0b55d590f |
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