text stringlengths 12 1.05M | repo_name stringlengths 5 86 | path stringlengths 4 191 | language stringclasses 1
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values | size int32 12 1.05M | keyword listlengths 1 23 | text_hash stringlengths 64 64 |
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../../../../../../../share/pyshared/orca/scripts/toolkits/J2SE-access-bridge/speech_generator.py | Alberto-Beralix/Beralix | i386-squashfs-root/usr/lib/python2.7/dist-packages/orca/scripts/toolkits/J2SE-access-bridge/speech_generator.py | Python | gpl-3.0 | 96 | [
"ORCA"
] | 3fc2e20760c9f84a6b0e7f714e1a463222b609fc1d24c2fc50fc543fbbf42e57 |
#***********************************************************************
# This code is part of CmplServer
#
# Copyright (C) 2013, 2014
# Mike Steglich - Technical University of Applied Sciences
# Wildau, Germany
#
# CmplServer is a project of the Technical University of
# Applied Sciences Wildau and t... | Mangara/ArboralExplorer | lib/Cmpl/cmplServer/cmplServer/CmplServer.py | Python | apache-2.0 | 36,323 | [
"VisIt"
] | b30375ea98f4af531525f55f43ab85d17e41e0c25e8bbeb6a946114667830d3f |
# coding: utf-8
from __future__ import unicode_literals
import base64
import binascii
import collections
import ctypes
import email
import getpass
import io
import itertools
import optparse
import os
import platform
import re
import shlex
import shutil
import socket
import struct
import subprocess
import sys
import xm... | steebchen/youtube-dl | youtube_dl/compat.py | Python | unlicense | 92,342 | [
"Bowtie"
] | 55b12d2fb8bd9859a453b3b21401e44a10d1afb38700708a306c5e9dd561b67a |
#!/usr/bin/env python
# Copyright 2014-2020 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | sunqm/pyscf | pyscf/lib/numpy_helper.py | Python | apache-2.0 | 38,383 | [
"PySCF"
] | 9892ab5dfe6b47cfd5df9b54542a14cf815cd83c28a2937b1bd42bcb5f633ec3 |
import datetime
import glob
import netCDF4
import numpy
import os
import pytz
from scipy.interpolate import InterpolatedUnivariateSpline
#from scipy.interpolate import interp1d
import sys
# check the scripts directory is present
if not os.path.exists("../scripts/"):
print "erai2nc: the scripts directory is missing"... | OzFlux/OzFluxQC | utilities/erai2nc.py | Python | gpl-3.0 | 25,046 | [
"NetCDF"
] | d61cc8713fbab13e16c8ed33297227668b63d842b85e4856f13435326579beb5 |
#!/usr/bin/env python
import sys
import argparse
import shutil
import numpy as np
import netCDF4 as nc
from scipy import signal
"""
Smooth out bathymetry by applying a gaussian blur.
See: http://wiki.scipy.org/Cookbook/SignalSmooth
Convolving a noisy image with a gaussian kernel (or any bell-shaped curve)
blurs th... | CWSL/access-cm-tools | config/smooth_mom_bathymetry.py | Python | apache-2.0 | 3,434 | [
"Gaussian"
] | 660e0fbc75eb0ad3f41584d4440c83cb576bd850369b87119f6001ee77a00f22 |
#!/usr/bin/env python
# Copyright (c) The Shogun Machine Learning Toolbox
# Written (w) 2014 Daniel Pyrathon
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
#
# 1. Redistributions of source... | MikeLing/shogun | applications/classification/train_multiclass_svm.py | Python | gpl-3.0 | 3,974 | [
"Gaussian"
] | a85acc7f1c21b9838fe201921629881c83dfcacaa98bbe8e37e27df4b2a6e323 |
# Orca
#
# Copyright 2005-2009 Sun Microsystems Inc.
# Copyright 2010 Orca Team.
# Copyright 2014-2015 Igalia, S.L.
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 ... | GNOME/orca | src/orca/scripts/web/script.py | Python | lgpl-2.1 | 107,554 | [
"ORCA"
] | 4a50744e4491e8a6b04e7533d28ed8b59812749331f73d1273d86f5fc14e52b1 |
""" :mod: RequestTaskTests
=======================
.. module: RequestTaskTests
:synopsis: test cases for RequestTask class
test cases for RequestTask class
"""
__RCSID__ = "$Id $"
# #
# @file RequestTaskTests.py
# @author Krzysztof.Ciba@NOSPAMgmail.com
# @date 2013/03/27 15:59:40
# @brief Definition ... | Sbalbp/DIRAC | RequestManagementSystem/private/test/RequestTaskTests.py | Python | gpl-3.0 | 2,268 | [
"DIRAC"
] | da285f2fe3e16068fb05afff8b8a6539c72fed984ee90c2e15a63651f065690f |
# Copyright 2015 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | xiusir/carc34-classify-localize | model/carc19.py | Python | apache-2.0 | 18,027 | [
"Gaussian"
] | 96befe0ce79cdec72103f2c20dbb723adf71b4e0c7fcabc11fb32a0c5e2bcec9 |
import random
from ase import Atoms
from ase.ga.data import PrepareDB
metals = ['Al', 'Au', 'Cu', 'Ag', 'Pd', 'Pt', 'Ni']
population_size = 10
# Create database
db = PrepareDB('fcc_alloys.db',
population_size=population_size,
metals=metals)
# Create starting population
for i in range(... | askhl/ase | doc/tutorials/ga/ga_fcc_alloys_start.py | Python | gpl-2.0 | 518 | [
"ASE"
] | ae9101a2943c124834750a3c22d811a0cfdf7c852ddb5417f773a70219acfb2e |
# -*- encoding: utf-8 -*-
# Yuuno - IPython + VapourSynth
# Copyright (C) 2017 StuxCrystal (Roland Netzsch <stuxcrystal@encode.moe>)
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published by
# the Free Software Foundation, ei... | stuxcrystal/yuuno | yuuno_ipython/ipy_vs/encode.py | Python | lgpl-3.0 | 9,366 | [
"MOE"
] | 6db7030ac9945c31970bbfe4552ffb7fbef0170b1a53bac103c8ffa9ed84b314 |
#!/usr/bin/env python
"""
Cylinder mesh generator.
"""
from __future__ import print_function
from __future__ import absolute_import
import sys
sys.path.append('.')
from argparse import ArgumentParser
from sfepy.mesh.mesh_generators import gen_cylinder_mesh
from sfepy.discrete.fem.meshio import MeshIO
helps = {
'fi... | lokik/sfepy | script/cylindergen.py | Python | bsd-3-clause | 4,271 | [
"VTK"
] | 086382c6a30075766870257513dd883948a2d1391942a5f733d49de4088073ce |
# -*- coding: utf-8 -*-
# This file is part of Shuup.
#
# Copyright (c) 2012-2017, Shoop Commerce Ltd. All rights reserved.
#
# This source code is licensed under the OSL-3.0 license found in the
# LICENSE file in the root directory of this source tree.
import os
import pytest
from django.core.urlresolvers import reve... | suutari-ai/shoop | shuup_tests/browser/admin/test_product_detail.py | Python | agpl-3.0 | 2,014 | [
"VisIt"
] | 2fde6026d810ad54a33681eb3ca62f12a00586e78bdef58e801ae0b70f51c3d0 |
"""Test functions for python.energy_functions"""
__author__ = "Felix Simkovic"
__date__ = "05 Dec 2016"
import itertools
import unittest
from ample.modelling.energy_functions import DynamicDistances, RosettaFunctionConstructs
class TestDynamicDistances(unittest.TestCase):
def test_cutoff(self):
amino_ac... | linucks/ample | ample/modelling/tests/test_energy_functions.py | Python | bsd-3-clause | 1,912 | [
"Gaussian"
] | 347c00dd8dff3a9b788c4ce4bd0897500d76bc05a6f92eb5fd4d9f174c275f92 |
import numpy as np
from BDSpace import Space
from BDSpace.Figure.Sphere import Sphere
from BDSpace.Curve.Parametric import Arc
from BDSpace.Field import ConstantVectorConservativeField, SuperposedField
from BDSpace.Field import HyperbolicPotentialSphericalConservativeField
from BDSpace.Field import HyperbolicPotential... | bond-anton/Space_visualization | demo/08_superposed_fields_demo.py | Python | apache-2.0 | 3,877 | [
"Mayavi"
] | 02c4526ddc219507900da2bbcb8324c799513b11b86f176d0024da3261480461 |
"""Contains the SwitchController class which is responsible for reading switch
states and posting events to the framework.
"""
# switch_controller.py
# Mission Pinball Framework
# Written by Brian Madden & Gabe Knuth
# Released under the MIT License. (See license info at the end of this file.)
# Documentation and mor... | qcapen/mpf | mpf/system/switch_controller.py | Python | mit | 26,029 | [
"Brian"
] | 601e7cd5f0f3d435ad83f6597f9ab6bc7bd4905bf961e3bfe2659757ef5ffb82 |
#!/usr/bin/env python
#
# Tate - lightweight Mazacoin client
# Copyright (C) 2011 thomasv@gitorious
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at y... | mazaclub/tate | lib/old_mnemonic.py | Python | gpl-3.0 | 17,314 | [
"CRYSTAL",
"VisIt"
] | 5648262dfa29579cb4cafcbcfed270e36b5b6f9f6cd615155bcef0767b559260 |
#!/usr/bin/env python
import sys, re, time
import getopt, os, urllib, subprocess as sub
import urllib2
import json
import nltk
import pprint
from weathercom import get_weathercom
from tree import traverse
from google_api import get_google_asr
from tts import tts
# city? idk wut is this whole dame things. lol
lo = ""... | linnnh/Tenkiba | a.py | Python | mit | 13,346 | [
"VisIt"
] | a3298ef2f613faaad5d09edcf000deb6c7714b1fcb71b4206c76029b567c03ba |
########################################################################
# $HeadURL$
########################################################################
""" ProxyManager is the implementation of the ProxyManagement service
in the DISET framework
"""
__RCSID__ = "$Id$"
import types
import os
import cStringIO... | Sbalbp/DIRAC | FrameworkSystem/Service/BundleDeliveryHandler.py | Python | gpl-3.0 | 4,833 | [
"DIRAC"
] | a5d00f2145e4e6d05a4a8c27cace3a9486a5e8f12335d1f31cb79a529dcdd7da |
from nose.tools import assert_equal, assert_not_equal, assert_true, assert_false, \
assert_almost_equal, assert_list_equal
import numpy as np
from glmsklearn import BinomialRegressor, GammaRegressor, GaussianRegressor, \
InverseGaussianRegressor, NegativeBinomialRegressor, PoissonRegressor
from statsmodels.genm... | jcrudy/glm-sklearn | glmsklearn/test/test_glm.py | Python | bsd-3-clause | 3,682 | [
"Gaussian"
] | 93882f79a671da7461dafce04e25876565f363c5069b7a6f6a992a1a0146f2bb |
from django.test import TestCase
from regressiontests.select_related_regress.models import *
class SelectRelatedRegressTests(TestCase):
def test_regression_7110(self):
"""
Regression test for bug #7110.
When using select_related(), we must query the
Device and Building tables usin... | adviti/melange | thirdparty/google_appengine/lib/django_1_2/tests/regressiontests/select_related_regress/tests.py | Python | apache-2.0 | 6,343 | [
"Brian"
] | d4ae439c436340160d4c1e302de743b990c6044976806c4223c7097605824fff |
#!/usr/bin/env python2
#Qualitative Viewer Of More Outer-Dimensional Outputs
from __future__ import print_function, division, unicode_literals
import yaml, os, sys, shutil, json
import re
#TODO: stop using io when a str will do
import io
import Bio.PDB
import superpose
import argparse
try: CODE = Bio.PDB.protein_lette... | khendarg/ubi | quomodo.py | Python | bsd-3-clause | 31,868 | [
"BLAST",
"Jmol"
] | d43c62815430cf98f4531e6b9e8e2d5959a7e888251775650af2c6a16d767bb4 |
# (c) 2014, Brian Coca, Josh Drake, et al
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
... | b-dollery/testing | lib/ansible/cache/jsonfile.py | Python | gpl-3.0 | 4,065 | [
"Brian"
] | 5418cd1e3495765a5e576bc96ab064d08aada64ba85fbe642e829225e85592f2 |
# Copyright 2002 Gary Strangman. All rights reserved
# Copyright 2002-2016 The SciPy Developers
#
# The original code from Gary Strangman was heavily adapted for
# use in SciPy by Travis Oliphant. The original code came with the
# following disclaimer:
#
# This software is provided "as-is". There are no expressed or... | aeklant/scipy | scipy/stats/stats.py | Python | bsd-3-clause | 254,278 | [
"DIRAC"
] | e0537b2cad5f467e2b76fd7774b203eb80cf774b524cab32b3370a51799e1ca1 |
# encoding: utf-8
"""sys.excepthook for IPython itself, leaves a detailed report on disk.
Authors:
* Fernando Perez
* Brian E. Granger
"""
#-----------------------------------------------------------------------------
# Copyright (C) 2001-2007 Fernando Perez. <fperez@colorado.edu>
# Copyright (C) 2008-2011 The IP... | pacoqueen/ginn | extra/install/ipython2/ipython-5.10.0/IPython/core/crashhandler.py | Python | gpl-2.0 | 8,236 | [
"Brian"
] | d2d0040b00549689e0bfbfaa8c9616e60bbbfe25441274265e07546c465f2a12 |
from glutton.base import ExternalTool
from glutton.utils import get_log
from collections import namedtuple, defaultdict
from sys import exit
import subprocess
import os
BlastResult = namedtuple('BlastResult', ["qseqid",
"sseqid",
"pi... | ajm/glutton | glutton/blast.py | Python | gpl-3.0 | 3,223 | [
"BLAST"
] | bd92de8567cce5d08441b0fa486f5061286e88c519b5dce29523fd056f53475b |
# -*- coding: utf-8 -*-
"""
CuBIC is a statistical method for the detection of higher order of
correlations in parallel spike trains based on the analysis of the
cumulants of the population count.
.. autosummary::
:toctree: _toctree/cubic
cubic
Examples
--------
Homogeneous Poisson random spike trains popula... | INM-6/elephant | elephant/cubic.py | Python | bsd-3-clause | 7,708 | [
"Gaussian"
] | d62da0b116725541f0d80f727478da11f0553de307a95beedc71ec4e4674ec91 |
"""Support the ElkM1 Gold and ElkM1 EZ8 alarm/integration panels."""
import logging
import re
import elkm1_lib as elkm1
from elkm1_lib.const import Max
import voluptuous as vol
from homeassistant.const import (
CONF_EXCLUDE,
CONF_HOST,
CONF_INCLUDE,
CONF_PASSWORD,
CONF_TEMPERATURE_UNIT,
CONF_U... | qedi-r/home-assistant | homeassistant/components/elkm1/__init__.py | Python | apache-2.0 | 9,929 | [
"Elk"
] | 8209daeabc2d93e59f35415f40824666414ac234b0d9707a73d648f2324d7bdd |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2018 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | amjames/psi4 | psi4/share/psi4/databases/S66.py | Python | lgpl-3.0 | 148,397 | [
"Psi4"
] | 8ddb948813b86a3ac1163d959fc17eb8a11bd32a7e2da9471f10cd084c1aed33 |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.conf import settings
from django.conf.urls import include, url
from django.conf.urls.static import static
from django.contrib import admin
from django.views.generic import TemplateView
from django.views import defaults as default_views
# from d... | EricMuller/mynotes-backend | config/urls.py | Python | mit | 3,912 | [
"VisIt"
] | 658c15289afb2e07ed3a3f64c028dccb46958d8cd4f98c011c21bcff67f54233 |
# -*- coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2012 Async Open Source <http://www.async.com.br>
## All rights reserved
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU General Public License as published by
## the Free Software Foundati... | andrebellafronte/stoq | stoqlib/gui/test/test_paymentmethodeditor.py | Python | gpl-2.0 | 1,261 | [
"VisIt"
] | fd38d0c93bc66d1a3de131606a70afbe4753d5be650ab8570bcdccc7db093959 |
"""
Helper functions for Poisson processes
"""
import numpy as np
import logging
log = logging.getLogger("global_log")
def sampleInhomogeneousPoissonProc(tt, lam):
"""
Sample an inhomogeneous Poisson process with rate lam and times tt using
the time-rescaling theorem. Integrate the rate from [0,t) to get ... | mattjj/pyhawkes | pyhawkes/utils/poisson_process.py | Python | mit | 4,340 | [
"Gaussian"
] | e2e853ec11a1334acb52db7b3fad2775a22cbfd1f577d81f0f34f58ca0b87f06 |
# -*- coding: utf-8 -*-
"""
Created on Sun Feb 14 14:49:26 2016
@author: Adrien
"""
import numpy as np
import scipy.constants
from canpy.point_defects import point_defects
from canpy.useful import index_heading,time_to_snap,snap_to_time
from mpl_toolkits.mplot3d import axes3d
from matplotlib import ... | ruaultadrien/canpy | canpy/dumplog.py | Python | gpl-3.0 | 20,548 | [
"CRYSTAL",
"LAMMPS"
] | 81472b78c3f7a163725cbd2e14866411aaf7bbc2928d8b0697c1d0c2ff5da8c8 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# BoarG - mainwindow.py
# Copyright (C) 2014 Robert Einhaus <robert@einhaus.info>
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version... | robert00frag/boarg | mainwindow.py | Python | gpl-3.0 | 17,297 | [
"VisIt"
] | 9d0c510c53979d1feb3ebd5b3b5a7ee778dfbac5e750620c6fcd58a82f8c2c83 |
#!/usr/bin/env python
# A simple Ping-Pong score calculator
# This script is DEPRECATED
# Use gppc.sh instead.
# Given a sorted bed2 file, this script will output the nucleotide offset in
# the first column and number of read pairs having such an offset in
# the second column
#
# Test data:
# cat ~/data/prepachytene/... | yfu/tools | deprecated_ping_pong_calculator/pps_simple.py | Python | gpl-3.0 | 4,878 | [
"HTSeq"
] | fcc51adf2269bf63fa92671731ca3b4125588ffd0f4f4572c5fdb0ecb7dc8a7b |
#
# Copyright (c) 2015 nexB Inc. and others. All rights reserved.
# http://nexb.com and https://github.com/nexB/scancode-toolkit/
# The ScanCode software is licensed under the Apache License version 2.0.
# Data generated with ScanCode require an acknowledgment.
# ScanCode is a trademark of nexB Inc.
#
# You may not use... | yashdsaraf/scancode-toolkit | src/packagedcode/recognize.py | Python | apache-2.0 | 2,783 | [
"VisIt"
] | 14725090db06ef12d0d61cdf453025b6c3d033f5e7f35324fa3e3359de08e70e |
# -*- encoding: UTF-8 -*-
"""Plotting functions."""
import sys
import numpy as np
from itertools import count
from functools import partial
from scipy.optimize import OptimizeResult
from .acquisition import _gaussian_acquisition
from skopt import expected_minimum, expected_minimum_random_sampling
from .space import Ca... | scikit-optimize/scikit-optimize | skopt/plots.py | Python | bsd-3-clause | 51,950 | [
"Gaussian"
] | b5b18e4d67353909497eb692844a40ef2567e2804fd024357970fafadbf15a03 |
#!/usr/bin/env python
import vtk
import sys
fname=sys.argv[1]
surface_ids = []
region_ids = []
r=vtk.vtkExodusIIReader()
r.SetFileName(fname)
r.UpdateInformation()
r.GenerateGlobalNodeIdArrayOn()
r.GenerateGlobalElementIdArrayOn()
if vtk.VTK_MAJOR_VERSION<6:
r.ExodusModelMetadataOn()
r.PackExodusModelOntoOut... | jrper/MeshConversion | exodus_fix.py | Python | apache-2.0 | 3,907 | [
"VTK"
] | a793e3c96e015c8002a503b88f5856d2479b15eddcc886cc549ae4af0d18128c |
"""
Filename: lss.py
Reference: http://quant-econ.net/py/linear_models.html
Computes quantities associated with the Gaussian linear state space model.
"""
from textwrap import dedent
import numpy as np
from numpy.random import multivariate_normal
from scipy.linalg import solve
#-Check if Numba is Available-#
from .u... | andybrnr/QuantEcon.py | quantecon/lss.py | Python | bsd-3-clause | 12,033 | [
"Gaussian"
] | df58e297e6bafcb71bd51e1c02e75c111c37b183ca959724687f8f8b49c85a89 |
"""
2.5D DC inversion of with Topography
====================================
This is an example for 2.5D DC inversion. Earth includes a topography,
and below the topography conductive and resistive cylinders are embedded.
Sensitivity weighting is used for the inversion.
Approximate depth of investigation is computed ... | simpeg/simpeg | examples/_archived/plot_inv_dcip_dipoledipole_2_5Dinversion.py | Python | mit | 7,953 | [
"Gaussian"
] | d06766ac1f682b0f9f5acc8e856f567a28fa8511c3a9325b3fcaf61f688ec95e |
import matplotlib
matplotlib.use('Agg')
import matplotlib.pyplot as plt
from matplotlib.ticker import MaxNLocator, NullLocator, ScalarFormatter
import numpy as np
import sys
import corner
import matplotlib.gridspec as gridspec
from scipy import stats
import scipy.optimize as so
from dart_board import sf_history
from d... | astroJeff/dart_board | paper/scripts/corner_plot_2dist.py | Python | mit | 20,179 | [
"Gaussian"
] | 741fbd2a6e0ff813cc6c9a0a2ea4debf4dc6ecc7ab1182bad332e3acb05a3ba4 |
import IMP
import IMP.atom
import IMP.test
import IMP.pmi
import IMP.pmi.io
import IMP.pmi.dof
import IMP.pmi.topology
import IMP.pmi.restraints.stereochemistry
class Tests(IMP.test.TestCase):
def test_stereochemistry_basic(self):
""" test PMI2 connectivity restraint on basic system"""
mdl = IMP.... | shanot/imp | modules/pmi/test/medium_test_stereochemistry.py | Python | gpl-3.0 | 10,589 | [
"CHARMM"
] | d0ba9b3c20d845f289ec10a061712018db907f8783542595c6e3b62b3f3788a3 |
# pmx Copyright Notice
# ============================
#
# The pmx source code is copyrighted, but you can freely use and
# copy it as long as you don't change or remove any of the copyright
# notices.
#
# ----------------------------------------------------------------------
# pmx is Copyright (C) 2006-2013 by Daniel ... | dseeliger/pmx | pmx/ffparser.py | Python | lgpl-3.0 | 28,949 | [
"Amber",
"CHARMM"
] | b00fa6574fc4d8eab9e7bd9b99218aa356a971d58ce2250ec479207dd0bfc4a8 |
# -*- coding: utf-8 -*-
'''
*******************************************************************
* File: writeSBML.py
* Description:
* Author: HarshaRani
* E-mail: hrani@ncbs.res.in
********************************************************************/
/**********************************... | BhallaLab/moose | moose-core/python/moose/SBML/writeSBML.py | Python | gpl-3.0 | 58,965 | [
"MOOSE"
] | f569e1da54b781588acaaf0ddd3baa825913022e3985689c468c10688217ed00 |
#!/people/thnfs/homes/wehnerj/python-virtual/bin/python
import sys
import numpy as np
import argparse as arg
import MDAnalysis as md
import argparse as ap
#i,j,k run are unitcells in each direction so i,j,k>0
parser=ap.ArgumentParser(description="Tool to multiply .gro files shift molecules etc..")
parser.add_argum... | 12AngryMen/votca-scripts | Gromacs/Setupgrofile.py | Python | apache-2.0 | 2,882 | [
"MDAnalysis"
] | d5252888f8a027d9a9e3ab8bce14cb86b0ad364030b3c4d74ce94edb145f5b4e |
"""
Test courseware search
"""
import os
import json
from ..helpers import remove_file
from ...pages.common.logout import LogoutPage
from ...pages.studio.overview import CourseOutlinePage
from ...pages.lms.courseware_search import CoursewareSearchPage
from ...pages.lms.course_nav import CourseNavPage
from ...fixtures.... | defance/edx-platform | common/test/acceptance/tests/lms/test_lms_split_test_courseware_search.py | Python | agpl-3.0 | 4,833 | [
"VisIt"
] | 87d390eae564cef5b42922d92c448553828704b754080be9dd4a90b49d866529 |
# -*- coding: utf-8 -*-
import numpy as np
import abel
import matplotlib.pyplot as plt
IM = np.loadtxt("data/VMI_art1.txt.bz2")
legendre_orders = [0, 2, 4] # Legendre polynomial orders
proj_angles = range(0, 180, 10) # projection angles in 10 degree steps
radial_step = 1 # pixel grid
smoothing = 1 # smoothing 1/e... | rth/PyAbel | examples/example_linbasex_hansenlaw.py | Python | mit | 3,092 | [
"Gaussian"
] | 986128e55430827f82f54686b380aaa2314b0ed56520246c62c26c2f441d9759 |
"""
This module contains the MoleculeWriter class. It is used to apply
atom names from known topologies to the molecule by using a graph-based
representation of each molecule.
Author: Robin Betz
Copyright (C) 2019 Robin Betz
"""
# This program is free software; you can redistribute it and/or modify it under
# the te... | Eigenstate/dabble | dabble/param/writer.py | Python | gpl-2.0 | 15,804 | [
"CRYSTAL",
"VMD"
] | 28d28947a41f49a71c58efff8ecc5fba806faed19ae93aa58b2fbcd5cd5ca13e |
import time
from _MultiNEAT import *
from concurrent.futures import ProcessPoolExecutor, as_completed
import matplotlib.pyplot as plt
from numpy import array, clip
try:
import cv2
import numpy as np
cvnumpy_installed = True
except:
print ('Tip: install the OpenCV computer vision library (2.0+) with '
... | lvitol/MultiNEAT | MultiNEAT.py | Python | lgpl-3.0 | 16,190 | [
"NEURON"
] | d9a5372775e675f1046596b2fa25dcc059307bfeddbe80bad79e49e629370e87 |
"""
!--------------------------------------------------------------------------!
! LICENSE INFO: !
!--------------------------------------------------------------------------!
! This file is part of localCIDER. ... | Pappulab/localCIDER | localcider/backend/wang_landau.py | Python | gpl-2.0 | 59,793 | [
"VisIt"
] | 8410ed4e61ad6a91467f99221ac6c25d65de8fdb00a5dd2aa1fdc3acc69ea032 |
"""
Test of the classical LM model for language modelling
"""
import cProfile
from groundhog.datasets import LMIterator
from groundhog.trainer.SGD_momentum import SGD as SGD_m
from groundhog.trainer.SGD import SGD
from groundhog.mainLoop import MainLoop
from groundhog.layers import MultiLayer, \
RecurrentLayer, ... | tomsbergmanis/gh_rnn_lm | scripts/DT_RNN_Tut.py | Python | bsd-3-clause | 14,914 | [
"Gaussian"
] | 9bce01350f32db678b5684c2ae2092972a332de719b4f389542aa85b8a7894b8 |
# -*- coding: ISO-8859-1 -*-
# Copyright 2010 Dirk Holtwick, holtwick.it
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unle... | drchrono/pisa | sx/pisa3/pisa_parser.py | Python | apache-2.0 | 23,070 | [
"VisIt"
] | c739292dcef8e9264d5f6bb4b6ae35a237913af5017906d50c80d44e01f04911 |
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
#
"""Hold GenBank data in a straightforward format.
classes:
- Record - All of the information in a GenBank record.
- Reference - hold refere... | updownlife/multipleK | dependencies/biopython-1.65/build/lib.linux-x86_64-2.7/Bio/GenBank/Record.py | Python | gpl-2.0 | 23,027 | [
"Biopython"
] | 5a8041f75ec472acb7b29afe8c17d7942952450ff782cf72feee5abfd6795ec5 |
#!/usr/bin/env python
"""
This script is a python version of TimingAccuracy. We use some numpy functions
to simplify the creation of random coefficients.
"""
from __future__ import absolute_import, division, print_function
import os
import sys
import time
import numpy as np
sys.path.append(os.path.join(os.path.dirnam... | heroxbd/SHTOOLS | examples/python/TimingAccuracy/TimingAccuracyDH.py | Python | bsd-3-clause | 2,503 | [
"Gaussian"
] | d5a1a59c0b3e52d8e3c58eb6b57fbdff6d1236b7998e1d6e6247ef92b61ae385 |
#!/usr/bin/env python2.7
"""
UCSC Computational Genomics Lab Spladder Pipeline
Author: John Vivian
Affiliation: UC Santa Cruz Genomics Institute
Structure of Spladder Pipeline (per sample)
0 ---> 4 --> 5
|
1
/ \
2 3
0 - Download Sample
1 - STAR
2 - QC and Varia... | jpfeil/toil-scripts | src/toil_scripts/spladder_pipeline/spladder_pipeline.py | Python | apache-2.0 | 20,104 | [
"ADF"
] | b0c5f631f9043c3479f86f2cc4284b09ee064516451b4b297c54997ef2ed1781 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# --- BEGIN_HEADER ---
#
# server - [insert a few words of module description on this line]
# Copyright (C) 2003-2009 The MiG Project lead by Brian Vinter
#
# This file is part of MiG.
#
# MiG is free software: you can redistribute it and/or modify
# it under the terms of th... | heromod/migrid | mig/simulation/server.py | Python | gpl-2.0 | 12,572 | [
"Brian"
] | 9318e3147995791cbceb5264beb3c828276e4dc5783365207d0f1853320a380e |
"""
Universe stuff
"""
from nestedg.mixins import EncounteredMixin
from nestedg.model import Model
from nestedg.data import unknown, materials, lookups
from nestedg.data.materials import elements
from . import star
class GlobalItem(Model):
universe = Model.child_property(unknown.Model)
class ChildrenGenerato... | d2emon/generator-pack | src/factories/nestedg/data/universe/__init__.py | Python | gpl-3.0 | 5,585 | [
"Galaxy"
] | 49c2bff1dd630bbb1ca1ca069e56535cb1cd58ee50b729c814fdca6ff186d68a |
from __future__ import division
from __future__ import print_function
from builtins import zip
from builtins import range
from past.utils import old_div
import matplotlib.pyplot as plt
import numpy as np
from nplab import datafile
from skimage import feature, filters
import cv2
import math
from skimage.filters import ... | nanophotonics/nplab | nplab/analysis/mjh250-image-analysis.py | Python | gpl-3.0 | 13,037 | [
"Gaussian"
] | 49688052b13be10c44cba9a91d420669d6b47effcdc48876c6e8c63a44e2aef2 |
#!/usr/bin/env python
#
# AST.py
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License version 2 as
# published by the Free Software Foundation.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; witho... | tweemeterjop/thug | thug/AST/AST.py | Python | gpl-2.0 | 6,685 | [
"VisIt"
] | c0c48c1af6387ba7945d8940ee6fcc52a4a757bd50e3c9911a1d34340dae2346 |
from tp.netlib.objects import OrderDescs
constraints = """player(int,unicode)
subtype(int,int)
name(int,unicode)
size(int,int)
pos(int,int,int,int)
vel(int,int,int,int)
contains(int,int)
universe(int)
galaxy(int)
star(int)
planet(int)
fleet(int)
wormhole(int)
start(int,int,int,int)
end(int,int,int,int)
owner(int,int)
... | thousandparsec/daneel-ai | daneel/codeGenerator.py | Python | gpl-2.0 | 14,476 | [
"Galaxy"
] | afac6d20323533c3bc6152cc99ed96c990cc520bd6963ebe07824c92b7d40d56 |
from Bio import SearchIO
blast_qparse = SearchIO.parse('blastx-reston.results.xml', 'blast-xml')
#blast_qrecord = next(blast_qparse)
#blast_qrecord[0]
#blast_qrecord.hits[0]
#blast_qrecord.hits[0].id
#blast_qrecord.hits[0].description
for record in blast_qparse:
for hit in record:
print(hit.id, " -- ", hit.descrip... | manasb/genomics | 469/RESULTS/3_DEC_2015/temp.py | Python | gpl-3.0 | 332 | [
"BLAST"
] | 1d85d81d200b2b378469a91f793502335b235c19d0bbe14621da11c77cc2758b |
import king_phisher.client.gui_utilities as gui_utilities
import king_phisher.client.plugins as plugins
import king_phisher.client.server_events as server_events
from gi.repository import GLib
try:
from blink1 import blink1
import usb.core
except ImportError:
has_blink1 = False
else:
has_blink1 = True
COLORS = (... | zeroSteiner/king-phisher-plugins | client/blink1.py | Python | bsd-3-clause | 3,800 | [
"VisIt"
] | 434704f0e621657b2b078aba4a12e0a058f680b59435c5338a597efa929959b5 |
"""Filter design.
"""
from __future__ import division, print_function, absolute_import
import warnings
import numpy
from numpy import (atleast_1d, poly, polyval, roots, real, asarray, allclose,
resize, pi, absolute, logspace, r_, sqrt, tan, log10,
arctan, arcsinh, sin, exp, cosh,... | witcxc/scipy | scipy/signal/filter_design.py | Python | bsd-3-clause | 124,641 | [
"Gaussian"
] | 8fb6a1130888537c3a046fd062a60b962f0fece244449bffaf6f163eb5b7d202 |
#!/usr/bin/python
# -*- coding: UTF-8 -*-
from __future__ import absolute_import
from __future__ import with_statement
from __future__ import division
from __future__ import unicode_literals
from __future__ import print_function
import numpy as np
import numpy.linalg
import scipy
import scipy.linalg
from neurotools.f... | michaelerule/neurotools | linalg/operators.py | Python | gpl-3.0 | 8,240 | [
"Gaussian"
] | cacf4a2dc340e045668bd3e3cb652f007a2aae508ab1779522a068834d21be8e |
# -*- coding: utf-8 -*-
# Copyright 2007-2016 The HyperSpy developers
#
# This file is part of HyperSpy.
#
# HyperSpy is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at... | vidartf/hyperspy | hyperspy/drawing/utils.py | Python | gpl-3.0 | 46,935 | [
"ADF"
] | 19b3a279ba18b8023b9e75faa25080a0f594e9d5b4814f1287b699d8213d3d6f |
# -*- coding: utf-8 -*-
# HORTON: Helpful Open-source Research TOol for N-fermion systems.
# Copyright (C) 2011-2015 The HORTON Development Team
#
# This file is part of HORTON.
#
# HORTON is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public License
# as published by th... | eustislab/horton | horton/scripts/atomdb.py | Python | gpl-3.0 | 18,348 | [
"CP2K",
"ORCA",
"Psi4"
] | 407f7d04203a5d56b7ca96d549e652d8f607a73093bbb58bdfb5544112ae26fc |
import unittest
from phevaluator.tables import NO_FLUSH_7
from .utils import BaseTestNoFlushTable
class TestNoFlush7Table(BaseTestNoFlushTable):
TOCOMPARE = NO_FLUSH_7
TABLE = [0] * len(TOCOMPARE)
VISIT = [0] * len(TOCOMPARE)
NUM_CARDS = 7
@classmethod
def setUpClass(cls):
super().s... | HenryRLee/PokerHandEvaluator | python/tests/table_tests/test_hashtable7.py | Python | apache-2.0 | 474 | [
"VisIt"
] | 14f82506655f44dc227ead57d2b25bf3767a3a6d4148872ba489177bb7fd5dcc |
#!/usr/bin/python
# -*- coding: utf-8 -*-
from __future__ import (absolute_import, division, print_function)
__metaclass__ = type
#
# Copyright (C) 2017 Lenovo, Inc.
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public Licens... | skg-net/ansible | lib/ansible/modules/network/cnos/cnos_bgp.py | Python | gpl-3.0 | 49,308 | [
"VisIt"
] | c4087c00d072abcd61b2ce286f56311d233da47aecc7254e3eeb11430095cb73 |
# (C) British Crown Copyright 2017 - 2018, Met Office
#
# This file is part of Iris.
#
# Iris is free software: you can redistribute it and/or modify it under
# the terms of the GNU Lesser General Public License as published by the
# Free Software Foundation, either version 3 of the License, or
# (at your option) any l... | marqh/iris | lib/iris/_lazy_data.py | Python | lgpl-3.0 | 8,200 | [
"NetCDF"
] | 62e029691bf06e687a9cc23001d2332fd970a161024fd48501c4878680b1fd7b |
# $HeadURL$
__RCSID__ = "$Id$"
from DIRAC.ConfigurationSystem.private.ConfigurationData import ConfigurationData
gConfigurationData = ConfigurationData() | sposs/DIRAC | ConfigurationSystem/Client/ConfigurationData.py | Python | gpl-3.0 | 154 | [
"DIRAC"
] | 82e3659e87a9c8431d98ff27c783486766d4166c75b31d809994183e1c3810bc |
import string
__all__ = ["readAmberParam"]
class readAmberParam:
"""Extract info from coords.prmtop
prmtop:
string with the full coords.prmtop file
bondConn:
list of 2-ples such that bondConn[i][0] and bondConn[i][1] are the
atom numbers of the i-th bond; atom numbers ... | js850/PyGMIN | pygmin/utils/amber.py | Python | gpl-3.0 | 3,212 | [
"OpenMM"
] | 15d2b649d492fca661c5d6311a4844651db0d301f8b670272d1d44b36512777b |
# proxy module
from __future__ import absolute_import
from mayavi.filters.data_set_clipper import *
| enthought/etsproxy | enthought/mayavi/filters/data_set_clipper.py | Python | bsd-3-clause | 100 | [
"Mayavi"
] | c916ace26a2411e2fb1479a60f067d6782e87a37d539e0f6dff22da917392508 |
# pysam versioning information
__version__ = "0.3.1"
__samtools_version__ = "0.1.8"
__tabix_version__ = "0.2.1"
| genome-vendor/chimerascan | chimerascan/pysam/version.py | Python | gpl-3.0 | 112 | [
"pysam"
] | 8e8020cf42d41cda5d7691539bc0b4451abfe51d522de7692e7246ba784fed18 |
from __future__ import print_function
__author__ = """Alex "O." Holcombe, Charles Ludowici, """ ## double-quotes will be silently removed, single quotes will be left, eg, O'Connor
import time, sys, platform, os
from math import atan, atan2, pi, cos, sin, sqrt, ceil, radians, degrees
import numpy as np
import psychopy, ... | alexholcombe/dot-jump | dataRaw/Fixed Cue/test_dot-jump19Jan2017_10-50.py | Python | gpl-3.0 | 26,484 | [
"Gaussian"
] | 2497b16fa445703224acbab7d3a9a3606c34c94a118fa100fbf5b466ffb61000 |
# -*- coding: utf-8 -*-
import numpy
from functools import reduce
## Ordering of IRREPs:
# Molpro Ordering: http://www.molpro.net/info/current/doc/manual/node36.html
# Cotton Ordering: http://www.psicode.org/psi4manual/master/psithonmol.html#table-irrepordering
irrep_labels = {
# cotton ordering
'd2h' : ('', 'Ag'... | orbkit/orbkit | orbkit/libcint_interface/symmetry.py | Python | lgpl-3.0 | 2,238 | [
"Molpro",
"Psi4"
] | 5eb7ed5c9ceb233dab9ddede7b95cead47b922c3d9bf57431f204154082cebae |
# proxy module
from __future__ import absolute_import
from mayavi.plugins.mayavi_plugin import *
| enthought/etsproxy | enthought/mayavi/plugins/mayavi_plugin.py | Python | bsd-3-clause | 97 | [
"Mayavi"
] | e94e46675f2b77ac6fe11a68ad09adc5cae1dc95ae648c0df6048da6275e76ad |
#
# Copyright (C) 2017 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later vers... | KonradBreitsprecher/espresso | testsuite/rescale.py | Python | gpl-3.0 | 2,349 | [
"ESPResSo"
] | ab57f8cc54acc6e6ca55e26941c2f8bbc21cc12b04999975ba67efa7c67e165b |
# -*- coding: utf-8 -*-
#
# Copyright © 2014-2015 Red Hat, Inc.
#
# This copyrighted material is made available to anyone wishing to use,
# modify, copy, or redistribute it subject to the terms and conditions
# of the GNU General Public License v.2, or (at your option) any later
# version. This program is distributed... | crobinso/pkgdb2 | pkgdb2/api/admin.py | Python | gpl-2.0 | 10,607 | [
"Bioconductor"
] | bdf18cdf63932d06d996fa6fc22244ec05ed6bb70013588f5c20337c7d5c5754 |
import ast
from nimoy.ast_tools.specs import SpecTransformer
from nimoy.runner.metadata import RunnerContext
from nimoy.runner.spec_finder import Location
from nimoy.specification import Specification
class SpecificationTransformerSpec(Specification):
def where_methods_are_extracted_from_features(self):
... | browncoat-ninjas/nimoy | specs/nimoy/integration/specs_integration_spec.py | Python | apache-2.0 | 1,058 | [
"VisIt"
] | d374829135bf95ff7baeba4d99694a741fa07e2c0c0e6493dd59c8cf190e8e98 |
from __future__ import division
import numpy as np
from menpo.shape import TriMesh
from menpofit.base import DeformableModel, name_of_callable
from .builder import build_patch_reference_frame, build_reference_frame
class AAM(DeformableModel):
r"""
Active Appearance Model class.
Parameters
---------... | mrgloom/menpofit | menpofit/aam/base.py | Python | bsd-3-clause | 21,417 | [
"Gaussian"
] | 4771b601553279ff6939085c460a0cf71e42203a6618a35861598e577892e726 |
#!/usr/bin/env python2.7
"""
Runs GATK best practices pipeline for germline SNP and INDEL discovery.
BWA Alignment
0: Download FASTQ(s) or BAM
1: Align to reference
2: Sort BAM
3: Index Bam
GATK Preprocessing
4: Mark duplicates
5: Indel realignment
6: Base quality score recalibration
7: Apply recalibration
GATK Vari... | BD2KGenomics/toil-scripts | src/toil_scripts/gatk_germline/germline.py | Python | apache-2.0 | 41,286 | [
"BWA"
] | 87176d946cf80345f66ba828fcdf929dd90c7e65c65d80909aa6f92de5d62755 |
import numpy
from scipy.optimize import minimize
from scipy.stats import norm
from sklearn import gaussian_process
from . import kernels
from ..base import SearchAlgorithm
class Bayes(SearchAlgorithm):
"""Bayesian minimization method with gaussian process regressor.
This method uses scikit-learn's implement... | NovaSyst/chocolate | chocolate/search/bayes.py | Python | bsd-3-clause | 5,395 | [
"Gaussian"
] | 4b76df221d82f8df0b7b19c7cb0ee92c7d430373d041b410669ea5d08a8892eb |
"""
Collection of physical constants and conversion factors.
Most constants are in SI units, so you can do
print '10 mile per minute is', 10*mile/minute, 'm/s or', 10*mile/(minute*knot), 'knots'
The list is not meant to be comprehensive, but just a convenient list for everyday use.
"""
"""
BasSw 2006
physical consta... | lesserwhirls/scipy-cwt | scipy/constants/constants.py | Python | bsd-3-clause | 8,861 | [
"Avogadro"
] | 9d79f5c8e3ff56cf988c6abf0c13231545af53b8623b4c4f55ded6337ab0187a |
# Generated by Django 2.1.7 on 2019-06-06 08:58
from django.conf import settings
from django.db import migrations, models
import django.db.models.deletion
import uuid
class Migration(migrations.Migration):
dependencies = [
('occurrence', '0039_auto_20190514_1622'),
]
operations = [
migr... | parksandwildlife/wastd | occurrence/migrations/0040_auto_20190606_1658.py | Python | mit | 1,690 | [
"VisIt"
] | 2f19c10a1b3a6097fe1c5807db29e8678348ca58efe23f26f14a734657307b19 |
# BSD Licence
# Copyright (c) 2012, Science & Technology Facilities Council (STFC)
# All rights reserved.
#
# See the LICENSE file in the source distribution of this software for
# the full license text.
"""
Utilities for running jython performance tests.
"""
from dapbench.jython.netcdf import Dataset
import subproc... | cedadev/dapbench | dapbench/jython/util.py | Python | bsd-3-clause | 3,916 | [
"NetCDF"
] | 03a3ac30d54c8ad5502ff98d2a2acda78d4b971eee58956ff629626595ed6f8c |
#!/usr/bin/python
"""Test of learn mode."""
from macaroon.playback import *
import utils
sequence = MacroSequence()
sequence.append(KeyComboAction("<Control>f"))
sequence.append(TypeAction("Printing"))
sequence.append(KeyComboAction("Return"))
sequence.append(KeyPressAction(0, None, "KP_Insert"))
sequence.append(K... | pvagner/orca | test/keystrokes/gtk3-demo/learn_mode.py | Python | lgpl-2.1 | 3,015 | [
"ORCA"
] | 1e16cfaf707f306152cee78438e3c3775bf3832a9af1fe782a7bee63f8f8d5f7 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
'''
=========================================================================
Program: Visualization Toolkit
Module: TestNamedColorsIntegration.py
Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
All rights reserved.
See Copyright.txt or http://www.... | HopeFOAM/HopeFOAM | ThirdParty-0.1/ParaView-5.0.1/VTK/Filters/Core/Testing/Python/MassProperties.py | Python | gpl-3.0 | 4,937 | [
"VTK"
] | 4dfa7626ba1e6a8bd9db251f5838bdcf7ce42c8dda1ffacde3b87ff8476b834d |
""" This module contains various functions that are special cases
of incomplete gamma functions. It should probably be renamed. """
from __future__ import print_function, division
from sympy.core import Add, S, sympify, cacheit, pi, I
from sympy.core.function import Function, ArgumentIndexError
from sympy.core.sy... | grevutiu-gabriel/sympy | sympy/functions/special/error_functions.py | Python | bsd-3-clause | 68,553 | [
"Gaussian"
] | b4ebf5acec056b31d6046871d01929459b846e82ea5603e205b981a7fc1e4e90 |
import numpy as np
def gauss_ln_like(mu, cov, data):
"""
Gaussian log-likelihood function.
"""
assert len(mu) == len(cov)
assert len(mu) == data.shape[1]
n_data = len(data)
t1 = -0.5*n_data*np.log(2.*np.pi)
if len(mu) == 1:
var = cov
t2 = -0.5 * n_data*np.log(var)
t3 = -0.5 * (1./var) * np.sum(np.... | jimbarrett27/jimsUtils | jimsUtils/likelihoods.py | Python | gpl-3.0 | 611 | [
"Gaussian"
] | 03e9edee7f6a5e4d060f947970b1e685aa672bfe75584ef227af37f7495bbe42 |
# -*- coding: utf-8 -*-
"""
Select2 Widgets based on https://github.com/applegrew/django-select2.
These components are responsible for rendering
the necessary HTML data markups. Since this whole
package is to render choices using Select2 JavaScript
library, hence these components are meant to be used
with choice field... | monouno/site | judge/widgets/select2.py | Python | agpl-3.0 | 7,832 | [
"VisIt"
] | bcd9259039baa9896bc5c5b61044fb479b74736e248626ad2f25e5c93ea55472 |
# -*- encoding: utf-8 -*-
"""
Test suite for h2o.make_metrics().
:copyright: (c) 2016 H2O.ai
:license: Apache License Version 2.0 (see LICENSE for details)
"""
from __future__ import absolute_import, division, print_function, unicode_literals
import sys
sys.path.insert(1, "../../")
import h2o
from tests import pyun... | michalkurka/h2o-3 | h2o-py/tests/testdir_misc/pyunit_make_metrics.py | Python | apache-2.0 | 9,825 | [
"Gaussian"
] | 110d7c71b6e8067961e2b50b4bcbe207c410b3139afff2a5a0a068077347c90d |
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
__author__ = "Bharat Medasani"
__copyright__ = "Copyright 2013, The Materials Project"
__version__ = "0.1"
__maintainer__ = "Shyue Ping Ong"
__email__ = "bkmedasani@lbl.gov"
__date__ = "Aug 2, 2013"
import os
import re
impor... | materialsproject/pymatgen | pymatgen/io/tests/test_zeopp.py | Python | mit | 11,210 | [
"VASP",
"pymatgen"
] | ec596a173e3603ea5f5421b725491eb5430490c0702b57b96e1f08b33229631f |
# -*- coding: utf-8 -*-
# Copyright 2013 Mirantis, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless requi... | koder-ua/nailgun-fcert | nailgun/nailgun/rpc/receiver.py | Python | apache-2.0 | 37,667 | [
"VisIt"
] | 2be111f5007886231e5aa66b2c0d1bfab2a09096ea004b20527771ea1ea00ecd |
# (C) British Crown Copyright 2010 - 2015, Met Office
#
# This file is part of Iris.
#
# Iris is free software: you can redistribute it and/or modify it under
# the terms of the GNU Lesser General Public License as published by the
# Free Software Foundation, either version 3 of the License, or
# (at your option) any l... | andrewcbennett/iris | lib/iris/tests/system_test.py | Python | gpl-3.0 | 3,748 | [
"NetCDF"
] | 2f50d4f23fd6ac26a9a91a775d11e3a24b7283138aedbf395664a4d193d88dae |
# Copyright 2003-2008 by Leighton Pritchard. All rights reserved.
# Revisions copyright 2009 by Peter Cock.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
#
# Contact: Leighton Pritchard, Scot... | Ambuj-UF/ConCat-1.0 | src/Utils/Bio/Graphics/GenomeDiagram/__init__.py | Python | gpl-2.0 | 930 | [
"Biopython"
] | 89763bee9633e70aa4ef53afadb6c9083cd349ed6219dabb64f3b22201e71204 |
# -*- coding: utf-8 -*-
import re
import urllib2
import HTMLParser
import urllib,urlparse
import xbmcgui
import xbmcplugin
import xbmcaddon
import requests
from BeautifulSoup import BeautifulSoup as bs
from utils.webutils import *
from scrapers import *
try:
from addon.common.addon import Addon
from addon.... | mrquim/mrquimrepo | repo/plugin.video.p2psport/default.py | Python | gpl-2.0 | 11,222 | [
"VisIt"
] | e0d20da1f6753f2ca8e90b2ae592878954b7bce29a903e808139a824859c31fd |
# Copyright 2015 Pants project contributors (see CONTRIBUTORS.md).
# Licensed under the Apache License, Version 2.0 (see LICENSE).
from __future__ import absolute_import, print_function
import errno
import filecmp
import functools
import glob
import itertools
import json
import multiprocessing
import os
import re
imp... | jsirois/pex | tests/test_integration.py | Python | apache-2.0 | 120,164 | [
"VisIt"
] | c082d797d8d2669ddee30b7ca1ffcb890fdcad33d4c14b5addb974a44e2359b6 |
#!/usr/bin/env python3
# coding=utf-8
# Copyright 2015 Matvey Vyalkov
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unles... | CyberTailor/vk-stats | stats.py | Python | apache-2.0 | 21,971 | [
"Brian"
] | 074586ec9f715ca99b8698e4d6d2bd5fa3c9cea6cd0b4d27833b4254e4d575d7 |
# -*- coding: utf-8 -*-
import os
import sys
try:
from gluon import current
except ImportError:
print >> sys.stderr, """
The installed version of Web2py is too old -- it does not define current.
Please upgrade Web2py to a more recent version.
"""
# Version of 000_config.py
# Increment this if the user should... | waidyanatha/sambro-eden | modules/s3_update_check.py | Python | mit | 10,892 | [
"NetCDF"
] | da8c97cf2f365a0ba45f25be61382fcc2b539e6258bc64f21cf4cc5f8454a441 |
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