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from textwrap import dedent
import py, pytest
from _pytest.config import PytestPluginManager
@pytest.fixture(scope="module", params=["global", "inpackage"])
def basedir(request):
from _pytest.tmpdir import tmpdir
tmpdir = tmpdir(request)
tmpdir.ensure("adir/conftest.py").write("a=1 ; Directory = 3")
t... | nicoddemus/repo-test | testing/test_conftest.py | Python | mit | 12,208 | [
"VisIt"
] | 33cc3dbcc56d8dbf292fd664a740729533ce5cde1690b9596a7ec4152d8e666a |
import tensorflow as tf
from neupy.utils import asfloat
from neupy.exceptions import LayerConnectionError
from neupy.core.properties import (
ProperFractionProperty,
NumberProperty,
TypedListProperty,
)
from .base import Identity
__all__ = ('Dropout', 'GaussianNoise', 'DropBlock')
def bernoulli_sample(... | itdxer/neupy | neupy/layers/stochastic.py | Python | mit | 7,334 | [
"Gaussian"
] | 651abfe74f7f12a416452af10b055d975cfa410ae030bc109b4efcc7796d4394 |
#!/usr/bin/env python
# coding: utf-8
from __future__ import (absolute_import, division, print_function,
unicode_literals)
from builtins import range
import numpy as np
from future import standard_library
from .kernel_tools import kernel_delta_norm, kernel_gaussian
standard_library.install_... | suecharo/pyHSICLasso | pyHSICLasso/hsic_lasso.py | Python | mit | 1,489 | [
"Gaussian"
] | 8605592edd14654fc381e9e7fad4bb3eb853cd313cda1b4ded4f71f955db6e4c |
#######################################
# Copyright 2019 PMP SA. #
# SPDX-License-Identifier: Apache-2.0 #
#######################################
import argparse
import logging
import time
from ..providers.bioconductor import Bioconductor
# logging.basicConfig(format='[%(levelname)s] %(message)s', leve... | sgubianpm/RPackUtils | rpackutils/cli/cliBioc.py | Python | gpl-2.0 | 815 | [
"Bioconductor"
] | 4bc3c6a6b4933229dae3d392d290718c9a107e789b8fdfa18f55111db8c9716a |
import sys
sys.path.append('../..')
import unittest
from mupif import *
import math
import os
class VtkReader2_TestCase(unittest.TestCase):
# Testing getIntegrationPoints
@unittest.skipIf(True,'deprecated')
def test_ReadMesh(self):
from mupif import vtkreader2
m = vtkreader2.readMesh(8, ... | mupif/mupif | mupif/tests/test_VtkReader2.py | Python | lgpl-3.0 | 1,627 | [
"VTK"
] | 0c8d40d6af90eaecddeb30855b1d8413a510e3740627f60ae04e6858f1bc8ca2 |
import wx
import wx.html2
import wx.lib.agw.aui as aui
from wx.lib.newevent import NewEvent
from LowerPanelView import ViewLowerPanel
from gui.controller.CanvasCtrl import CanvasCtrl
from gui.controller.ToolboxCtrl import ToolboxCtrl
from gui.controller.ModelCtrl import ModelDetailsCtrl
# create custom events
wxCreate... | Castronova/EMIT | gui/views/EMITView.py | Python | gpl-2.0 | 5,874 | [
"NetCDF"
] | 43f2c005d863158ed02bab8e2ec37c4cfccb5531f5ec6b7fc1ba1feb1d5dace6 |
#!/usr/bin/python3
#
# WORK IN PROGRESS
#
# Classes already created;
# -app pannels
# pi_link_pnl - top-left connection box with ip, username, pass
# view_pnl - allows you to select which options to view
#
# -main pannels
# system_info_pnl - for setting up the raspberry pi system and pig... | Pragmatismo/Pigrow | scripts/gui/pigrow_remote.py | Python | gpl-3.0 | 785,193 | [
"exciting"
] | 24a380d9ed2be02116a3e57dc0ddaf9a87d012eb06b7b91b491b0d7e94a6d6d0 |
# Placeholder because units moved
# Remove this in version 1.0
import warnings
with warnings.catch_warnings():
warnings.simplefilter('always', DeprecationWarning)
warnings.warn(("units has moved to MDAnalysis.units "
"and will be removed from here in release 1.0"),
Deprecat... | alejob/mdanalysis | package/MDAnalysis/core/units.py | Python | gpl-2.0 | 355 | [
"MDAnalysis"
] | fdcc06e7c97cc6171acfc87785e977166d87b1f9e97b02b3f0f1778144e5ee95 |
# -*- coding: utf-8 -*-
# -------------------------------------------------------------------------------
# Name: sfp_accounts
# Purpose: Identify the existence of a given acount on various sites.
#
# Author: Steve Micallef <steve@binarypool.com>
#
# Created: 18/02/2015
# Copyright: (c) ... | agilemobiledev/spiderfoot | modules/sfp_accounts.py | Python | gpl-2.0 | 31,496 | [
"VisIt"
] | 3c865e6c39906f2a829d4ae2091a895f28bcd930299c43a9639b105f12c2b464 |
from future import standard_library
standard_library.install_aliases()
from builtins import str
import logging
import pycurl
import io
import re
import os
import datetime
from biomaj.utils import Utils
from biomaj.download.interface import DownloadInterface
class LocalDownload(DownloadInterface):
'''
Base cla... | markiskander/biomaj | biomaj/download/localcopy.py | Python | agpl-3.0 | 2,318 | [
"BLAST"
] | ac11dbc1cdb7f2e2b06a6e7f3276e528d50c8ccc5446f4f4c454b97d5519ce92 |
# -*- coding: utf-8 -*-
# ---
# jupyter:
# jupytext:
# formats: ipynb,.pct.py:percent
# text_representation:
# extension: .py
# format_name: percent
# format_version: '1.3'
# jupytext_version: 1.3.3
# kernelspec:
# display_name: Python 3
# language: python
# name: python3... | GPflow/GPflow | doc/source/notebooks/tailor/external-mean-function.pct.py | Python | apache-2.0 | 10,704 | [
"Gaussian"
] | c3609e3085e103bb2e34ee555b040fbdd113e78513698da1af026389d68ab133 |
# -*- coding: utf-8 -*-
#
# gif_population.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the License,... | weidel-p/nest-simulator | pynest/examples/gif_population.py | Python | gpl-2.0 | 5,050 | [
"NEURON"
] | f64e513da6a25d64c2fc13a4024cfa32afb989ac409ab0fb7de37324da609a0b |
import sys
import numpy
import gaussian
import gram_schmidt
import conf
def vibrational_analysis(file_name):
nr_atoms = gaussian.get_nr_atoms(file_name)
atom_xyz = gaussian.get_atom_coordinates(file_name, nr_atoms)
atom_mass = gaussian.get_atom_masses(file_name, nr_atoms)
# construct inertia ten... | bast/vibrant | ir.py | Python | lgpl-3.0 | 4,085 | [
"Gaussian"
] | 14026df2d0fad2603ee9649f4cc38d5de922cbe7722aad7e73f45ce61d9d951b |
"""
Search for configuration files to include in the blueprint.
"""
import base64
from collections import defaultdict
import errno
import glob
import grp
import hashlib
import logging
import os.path
import pwd
import re
import stat
import subprocess
from blueprint import util
# An extra list of pathnames and MD5 su... | devstructure/blueprint | blueprint/backend/files.py | Python | bsd-2-clause | 50,408 | [
"VisIt"
] | 66ec41037b9cc7a03dad05587f7ec72b2804bf00361650403efb4048b0d74b3b |
import unittest
from registry.humangenome.exon import *
class TestExonVariation(unittest.TestCase):
def test_fail_deletion(self):
self.assertRaises(Variation.Malformed, lambda: ExonVariation("42delA"))
def test_fail_duplication(self):
self.assertRaises(Variation.Malformed, lambda: ExonVariati... | muccg/rdrf | rdrf/registry/humangenome/tests/test_exon.py | Python | agpl-3.0 | 8,065 | [
"NEURON"
] | 1622f62121cf6a25926120a2a20944141d828118490e955eb93200c368a1230a |
'''
#######################################################################################################
AUTHOR: Adam Dynamic
CONTACT: helloadamdynamic@gmail.com / www.adamdynamic.com
LAST REVISION: 11 January 2014
PROJECT: Tube Challenge Route Creation
DESCRIPTION: C... | AdamDynamic/LondonUnderground | RouteCalculation.py | Python | gpl-2.0 | 12,036 | [
"VisIt"
] | d89393d6dcec73daa16a186ec8a545208665cc1e47a50c41ba075d7d26ead60f |
#!/usr/bin/env python3
"""Script to create a source/binary RPM.
"""
# $Id: make_rpm.py 496124 2016-03-23 20:34:27Z camacho $
from __future__ import print_function
import sys, os, shutil
from optparse import OptionParser
import subprocess
import tarfile
SCRIPT_DIR = os.path.dirname(os.path.abspath(sys.argv[0]))
sys.pat... | kyungtaekLIM/PSI-BLASTexB | src/ncbi-blast-2.5.0+/c++/scripts/projects/igblast/post_build/rpm/make_rpm.py | Python | lgpl-3.0 | 5,630 | [
"BLAST"
] | 900b0debcd0fa3f4ea5ce8203fe73bb449096d02d2035e5ea64dadae3d559f1b |
import numpy as np
from astropy.table import Table
from astropy.io import fits
import matplotlib.pyplot as plt
import matplotlib
import pickle
from matplotlib import cm
from numpy.random import randn
# table path
path = "/Users/caojunzhi/Downloads/upload_20170322/red_clump_dr13.fits"
star = fits.open(path)
table =... | peraktong/Cannon-Experiment | DR13_red_clump/0323_read_table_plot_rc_dr13.py | Python | mit | 11,205 | [
"VisIt"
] | 18f18fd779933c3ec0b6cb47a16ebe02aa7083b3c7a4b3319e6734c0cb7da9f7 |
# -*- coding: utf-8 -*-
# Copyright: (c) 2020-2021, Ansible Project
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
"""Dependency structs."""
# FIXME: add caching all over the place
from __future__ import (absolute_import, division, print_function)
__metaclass__ = type
imp... | s-hertel/ansible | lib/ansible/galaxy/dependency_resolution/dataclasses.py | Python | gpl-3.0 | 15,080 | [
"Galaxy"
] | 68fa5930fafce419a32e616ab59877037320677e0d60ebdf343ed19a0f306877 |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2002-2007 Donald N. Allingham
# Copyright (C) 2007-2008 Brian G. Matherly
# Copyright (C) 2011 Tim G L Lyons
# Copyright (C) 2011 Doug Blank <doug.blank@gmail.com>
#
# This program is free software; you can redistribute it and/or modify
... | jralls/gramps | gramps/gen/filters/rules/person/__init__.py | Python | gpl-2.0 | 6,905 | [
"Brian"
] | f5e871a98a8d74869508220260c615910424d87b26a60c6435ea7c9942f39786 |
# -*- coding: utf-8 -*-
"""
End-to-end tests for the LMS.
"""
from textwrap import dedent
from unittest import skip
from nose.plugins.attrib import attr
from bok_choy.web_app_test import WebAppTest
from ..helpers import UniqueCourseTest, load_data_str
from ...pages.lms.auto_auth import AutoAuthPage
from ...pages.comm... | UQ-UQx/edx-platform_lti | common/test/acceptance/tests/lms/test_lms.py | Python | agpl-3.0 | 25,892 | [
"VisIt"
] | 7ca820f1e86d01356f25f6d61be9a41fa11fc89735ed10e55a9e9a67bac6c85c |
"""
@name: PyHouse/src/Modules/Drivers/USB/_test/test_USB_driver.py
@author: D. Brian Kimmel
@contact: D.BrianKimmel@gmail.com>
@copyright: (c) 2014-2017 by briank
@license: MIT License
@note: Created on Jul 22, 2014
@Summary:
Passed all 2 tests - DBK - 2018-02-13
"""
__updated__ = '2019-10-06'
# I... | DBrianKimmel/PyHouse | Project/src/Modules/Core/Drivers/Usb/_test/test_Usb_driver.py | Python | mit | 2,011 | [
"Brian"
] | 6e8abb76f06d4ead46040faec9e0c446c63906cc2fb7f5fcf1d07d4e6389d1c5 |
# Copyright 2009 Brian Quinlan. All Rights Reserved.
# Licensed to PSF under a Contributor Agreement.
"""Implements ThreadPoolExecutor."""
from __future__ import with_statement
import atexit
import threading
import weakref
import sys
from concurrent.futures import _base
try:
import queue
except ImportError:
... | LockScreen/Backend | venv/lib/python2.7/site-packages/concurrent/futures/thread.py | Python | mit | 4,605 | [
"Brian"
] | 829d134fac30cdbafc5070c2e18ee4a0c10e85643f0ad4b3aecf57616aea89a4 |
#!/usr/bin/python
#
# (C) 2013, Markus Wildi
#
#
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2, or (at your option)
# any later version.
#
# This program is dis... | xyficu/rts2 | scripts/rts2saf/rts2saf/createdevices.py | Python | gpl-2.0 | 26,362 | [
"VisIt"
] | afe7d11cc1ac49e5e4f22119fec099b96d29aeecf4a428f380b2d9f4d738058a |
"""
Tools for alignment files
"""
from __future__ import division
from __future__ import print_function
from __future__ import unicode_literals
import argparse
import pysam
import ga4gh.common.utils as utils
class AlignmentFileConstants(object):
"""
A container class for constants dealing with alignment fil... | saupchurch/server | scripts/alignment_file.py | Python | apache-2.0 | 3,056 | [
"pysam"
] | 0fc90f0baf0269f8b3f41de5ea9b54172983d11b440b1816cb0a7e3f8edf80db |
#
# This source file is part of appleseed.
# Visit https://appleseedhq.net/ for additional information and resources.
#
# This software is released under the MIT license.
#
# Copyright (c) 2018-2019 The appleseedhq Organization
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this s... | dictoon/blenderseed | properties/nodes.py | Python | mit | 15,034 | [
"VisIt"
] | 8a550d369904780beb4d45195c7467c7e4e091f4a6154c560c26f2f1e52d8b80 |
# Copyright 2017 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | jbedorf/tensorflow | tensorflow/python/autograph/converters/continue_statements.py | Python | apache-2.0 | 5,804 | [
"VisIt"
] | 948d84ccd206d59d119592579069ee066eee3002ace40a3d893ccdad8371d0e8 |
"""
Creates augmented and size-normalized versions of the datasets
(baubles, christmas trees, snowy landscapes).
"""
from __future__ import print_function, division
import os
import random
import re
import numpy as np
from scipy import misc
from scipy import ndimage
from ImageAugmenter import create_aug_matrices
from s... | aleju/christmas-generator | dataset/preprocess_images.py | Python | mit | 13,051 | [
"Gaussian"
] | b1f7a3781be80967ae178897f2dc0965e34d9fcb3906ea11df9996be17b6ac11 |
"""
@name: Modules/Core/Utilities/extract_tools.py
@author: D. Brian Kimmel
@contact: D.BrianKimmel@gmail.com
@copyright: (c) 2018-2019 by D. Brian Kimmel
@note: Created on Oct 3, 2018
@license: MIT License
@summary:
"""
__updated__ = '2019-08-20'
# Import system type stuff
def extract_quoted(p_st... | DBrianKimmel/PyHouse | Project/src/Modules/Core/Utilities/extract_tools.py | Python | mit | 1,417 | [
"Brian"
] | a4deb52a89daa4dfdad7dacf1c9f2fc9dcde20a6aa256aa6bf90a825539baba8 |
# Copyright (c) 2014,2016, Teemu Murtola
"""Classes to parse, store, and interpret `gerrit query` results."""
import datetime
import json
import os.path
import re
import subprocess
def _convert_time(timestamp):
"""Convert Gerrit timestamps to Python objects."""
if not timestamp:
return None
retur... | teemumurtola/gerrit-scripts | gerrit/query.py | Python | bsd-3-clause | 10,044 | [
"Gromacs"
] | 1955cf5ad0a3be9c46444201235c316127af0faf93d2d47d18d4948bdb2c581c |
"""
InaSAFE Disaster risk assessment tool developed by AusAid -
**IS Utilitles implementation.**
Contact : ole.moller.nielsen@gmail.com
.. note:: This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foun... | gvallarelli/inasafe | safe_qgis/utilities.py | Python | gpl-3.0 | 38,129 | [
"VisIt"
] | 228db7ed1c8b9c5a6a2b78af90a10c4532228c4816f9a641c7f5e8fc52285a1d |
# Orca
#
# Copyright 2005-2008 Sun Microsystems Inc.
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any later version.
#
# This... | pvagner/orca | src/orca/scripts/web/bookmarks.py | Python | lgpl-2.1 | 5,074 | [
"ORCA"
] | a5095e3d98f379ba0c371012a9aa41c88a9c18336c1fb291ff6792ea3a2f52e5 |
#!/usr/bin/env python
import os
import vtk
from vtk.test import Testing
from vtk.util.misc import vtkGetDataRoot
VTK_DATA_ROOT = vtkGetDataRoot()
# The current directory must be writeable.
#
try:
channel = open("mni-surface-mesh-binary.obj", "wb")
channel.close()
ren1 = vtk.vtkRenderer()
... | timkrentz/SunTracker | IMU/VTK-6.2.0/IO/MINC/Testing/Python/TestMNIObjects.py | Python | mit | 4,808 | [
"VTK"
] | d803f754245f315211aaa8c6b74b4c5178fcf70c7db08b24ad57396fda6c6057 |
#
# Copyright (c) 2015 nexB Inc. and others. All rights reserved.
# http://nexb.com and https://github.com/nexB/scancode-toolkit/
# The ScanCode software is licensed under the Apache License version 2.0.
# Data generated with ScanCode require an acknowledgment.
# ScanCode is a trademark of nexB Inc.
#
# You may not use... | yashdsaraf/scancode-toolkit | tests/licensedcode/test_index.py | Python | apache-2.0 | 27,735 | [
"VisIt"
] | 1acde7e89b0092da55902d5438c17c5b23ff2fdb6427612d3c1f0746eae7302e |
class Solution(object):
def canFinish(self, numCourses, prerequisites):
"""
:type numCourses: int
:type prerequisites: List[List[int]]
:rtype: bool
"""
def dfs(i):
if visit[i] == -1:
return False
if visit[i] == 1:
... | Mlieou/lXXtcode | leetcode/python/ex_207.py | Python | mit | 771 | [
"VisIt"
] | b697032a5900bb2d4e7f2eff2f312ec6bf72543f9c9676e1a7cca9a73334c2f6 |
########################################################################
# $HeadURL$
# File : DiracSiteAgent.py
# Author : Andrei Tsaregorodtsev
########################################################################
"""
Agent to manage a DIRAC site, it submits and monitors pilots to a local cluster
"""
__RCSID_... | avedaee/DIRAC | WorkloadManagementSystem/Agent/DiracSiteAgent.py | Python | gpl-3.0 | 10,189 | [
"DIRAC"
] | 3434f35d3663094cb5026c054e52f08f4a4dea5315a169cd1c6195f1dbd7ff34 |
#!/usr/bin/env python
#
# This code was copied from the data generation program of Tencent Alchemy
# project (https://github.com/tencent-alchemy).
#
#
# Copyright 2019 Tencent America LLC. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in com... | sunqm/pyscf | pyscf/df/hessian/rhf.py | Python | apache-2.0 | 22,239 | [
"PySCF"
] | 95c2efd34da24faa370b416ac6095c15bb09742a5a804beda2f5571bda6a1c2e |
#! /usr/bin/python
import sys;
import url_errors
DONE = False
DONE_string = "[-- DONE --]"
'''
Assumes that we are at the current line where that starts with '*'. The format
is follows the following example:
--------------------------
* 1:2009-09-09:12:56:19 http://physics.nist.gov
e796febb7593fde042a7511a9761da... | JoeDurrant/pysearch | readwg.py | Python | gpl-2.0 | 4,059 | [
"VisIt"
] | e834e6e123aa2046848504d4e812208091aaa9ab1df371f840948ac5e9dfbb51 |
#!/usr/bin/python
#
# Copyright 2007 Google Inc.
# Licensed to PSF under a Contributor Agreement.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICE... | nouiz/fredericbastien-ipaddr-py-speed-up | tags/1.1.1/ipaddr_test.py | Python | apache-2.0 | 26,806 | [
"FEFF"
] | ad7c77548935f289b0017fb29e5ec5d3cb3f3b9ecd5ea168e9baef0091e26a0b |
import copy
import numpy as np
import datetime
import lms_code.lib.rep2 as rep2
from lms_code.plots.plot_map import base, topo, gps_opts,\
even_grid, fault_trace, get_topo, labels
from lms_code.plots import plot_all as lms_plot
import matplotlib.pyplot as plt
from scipy.stats.kde import gaussian_kde
def throw_out(... | tbenthompson/LMS_public | lms_code/plots/plot_qi.py | Python | mit | 4,040 | [
"Gaussian"
] | bcb624eb5ccc5a1d3644a891b520c3b6c1e0320e20d301511f246443604df6f5 |
import numpy as np
from ase import Atoms
from ase.units import Bohr
from gpaw.density import RealSpaceDensity
from gpaw.lfc import BasisFunctions
from gpaw.mixer import Mixer
from gpaw.setup import Setups
from gpaw.xc import XC
from gpaw.utilities.tools import coordinates
from gpaw.mpi import rank
class HirshfeldDen... | robwarm/gpaw-symm | gpaw/analyse/hirshfeld.py | Python | gpl-3.0 | 6,333 | [
"ASE",
"GPAW"
] | 4c38d88c7e260c67c86045c8a97f4241fcdad257ed7412b3c75a5ad5bd0c810e |
# coding: utf8
{
' Quotas: %(quotas)s x%(quota_amount).2f': ' Quotas: %(quotas)s x%(quota_amount).2f',
' Transaction number: %s': ' Transaction number: %s',
'"update" is an optional expression like "field1=\'newvalue\'". You cannot update or delete the results of a JOIN': '"update" é uma expressão opcional como "campo1... | reingart/erplibre.app | languages/pt-br.py | Python | agpl-3.0 | 15,377 | [
"VisIt"
] | 5f04da9acbac757b0c7f449361e06d83d8c024a797d7f2debd07c7db8d2a0626 |
#
# NAME
# problem_set1.py
#
# DESCRIPTION
# Open, view, and analyze raw extracellular data
# In Problem Set 1, you will write create and test your own spike detector.
#
import numpy as np
import matplotlib.pylab as plt
def load_data(filename):
"""
load_data takes the file name and reads in the dat... | ngr/sandbox | neuraldata/problem_set1/Results/problem_set1.py | Python | mit | 9,815 | [
"NEURON"
] | 7b4c3d4154f48daace67f7fd2017f798b2a6cc8e970f02bd916478f2bbdb251a |
# -*- coding: utf-8 -*-
#
# This file is part of the OpenHandWrite project software.
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any ... | isolver/OpenHandWrite | distribution/getwrite/wintabtest/constants.py | Python | gpl-3.0 | 3,045 | [
"Gaussian"
] | 68d4ecb7cb513b702a5a08b5c5dfcf2d55eec4a6b4c613fd89cc4f3571b88094 |
#!/usr/bin/env python
"""
MagPy-General: Standard pymag package containing the following classes:
Written by Roman Leonhardt, Rachel Bailey 2011/2012/2013/2014
Written by Roman Leonhardt, Rachel Bailey, Mojca Miklavec 2015/2016
Version 0.3 (starting May 2016)
License:
https://creativecommons.org/licenses/by-nc-sa/4.0/l... | hschovanec-usgs/magpy | magpy/stream.py | Python | gpl-3.0 | 493,526 | [
"Gaussian",
"NetCDF"
] | d2249a646cebd665830743de90a98ad12136a750498422dd583c7f04b419a6b7 |
# -*- coding: utf-8 -*-
# vim: autoindent shiftwidth=4 expandtab textwidth=120 tabstop=4 softtabstop=4
###############################################################################
# OpenLP - Open Source Lyrics Projection #
# ------------------------------------------------------... | marmyshev/item_title | openlp/core/ui/generaltab.py | Python | gpl-2.0 | 21,257 | [
"Brian"
] | c044b19917901afa0d2aff08bea5811ea56ec7c10600b48d1667635cf72ff7dd |
#
# Copyright 2015 The AMP HTML Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applic... | nexxtv/amphtml | validator/validator_gen_js.py | Python | apache-2.0 | 37,674 | [
"VisIt"
] | d6ddf89da718f02d20a87955048af3a9b2e601a25d094684bb062f2e054f207a |
# -*- coding: utf-8 -*-
# import os
# import json
def meta_file():
tmp = {}
"""
Daily Meteorology - Livneh et al., 2013
"""
tmp['dailymet_livneh2013'] = {}
tmp['dailymet_livneh2013']['spatial_resolution'] = '1/16-degree'
tmp['dailymet_livneh2013']['web_protocol'] = 'ftp'
tmp['dai... | ChristinaB/Observatory | tutorials/ogh_meta.py | Python | mit | 28,614 | [
"NetCDF"
] | f006da6d16e9ec8b105003e86b85225e120389318210fd1274c2475b0239c04c |
import numpy as np
class Point():
""" represent a point as a gaussian distribution that can
be placed anywhere on the line of N units. position is
in the normalized range (0.0, 1.0)
"""
def __init__(self, pos, N, width=0.1):
""" pos is in range (0,1) """
self.x = np.linspace(0,1,... | jsheedy/neopixel-framebuffer | point.py | Python | mit | 611 | [
"Gaussian"
] | 81409bb174b499679988900c12611fe7af26c335bb2f11a01d8ab74de3907176 |
# PYTHON script to set up free energy simulation by creating mdp files from a template (genericmdp.mdp)
import optparse
import sys
import string
# User inputted values and options
parser = optparse.OptionParser(description="Create .#.mdp files for running GROMACS simulations to determine free energy of solvation.")
p... | choderalab/open-forcefield-group | reweighting_optimization/scripts/fep_mdp_setup.py | Python | gpl-2.0 | 1,408 | [
"Gromacs"
] | 75212598e9378c03bc69964850f0790877830bea99fceed6652cd5b382a32435 |
#!/usr/bin/env python
# coding=utf-8
#
""" Create a movie of a 2D variable
Requires: ffmpeg
"""
#- Modules
#
import sys, os
import xarray as xr
import time, calendar
import matplotlib.pyplot as plt
from mpl_toolkits.basemap import Basemap, pyproj
sys.path.append("../../../oocgcm/")
from oocgcm.oceanmodels.nemo ... | lesommer/oocgcm | examples/scripts/make_movie_ffmpeg.py | Python | apache-2.0 | 5,060 | [
"NetCDF"
] | 887b6aa2a39dd8e9778b1df27610648a2de9ad089b3db7041fbc14eba31b5942 |
import os
import sys
import vtkAll as vtk
import math
import time
import types
import functools
import numpy as np
from ddapp import transformUtils
from ddapp import lcmUtils
from ddapp.timercallback import TimerCallback
from ddapp.asynctaskqueue import AsyncTaskQueue
from ddapp import objectmodel as om
from ddapp imp... | edowson/director | src/python/ddapp/walkingtestdemo.py | Python | bsd-3-clause | 8,566 | [
"VTK"
] | 6881d534c5eed90820107e286359e1ac700d9d76dc87e17da3adcd94aeb5f0bf |
"""
1D Gaussian Mixture Example
---------------------------
Figure 4.2.
Example of a one-dimensional Gaussian mixture model with three components.
The left panel shows a histogram of the data, along with the best-fit model
for a mixture with three components. The center panel shows the model selection
criteria AIC (se... | nhuntwalker/astroML | book_figures/chapter4/fig_GMM_1D.py | Python | bsd-2-clause | 4,324 | [
"Gaussian"
] | 59b907feb999a49075366f9cff659345910660df65f629896f3a76571b99173d |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""Module contains classes presenting Element and Specie (Element + oxidation state) and PeriodicTable."""
import re
import json
import warnings
from io import open
from pathlib import Path
from enum import En... | gVallverdu/pymatgen | pymatgen/core/periodic_table.py | Python | mit | 49,721 | [
"CRYSTAL",
"pymatgen"
] | d8c4fcbf8cc92461859bc1cfea78a8c3061ba6e8ad63b479b2f1debcaedae969 |
# -*- coding: utf-8 -*-
"""Parser for the Google Chrome History files.
The Chrome History is stored in SQLite database files named History
and Archived History. Where the Archived History does not contain
the downloads table.
"""
from plaso.containers import time_events
from plaso.lib import timelib
from pla... | dc3-plaso/plaso | plaso/parsers/sqlite_plugins/chrome.py | Python | apache-2.0 | 11,357 | [
"VisIt"
] | 787cf830b330ddd62686f2dbe9c14225d3d6bf4fd6b89000fc451465c180ba1c |
"""
Exoplanet related equatio. Each equation is a class which takes input of every
variable bar one and will output the variable left out. They therefore implement
all permutations of the equation with respect to the variables.
As an example we choose the equation Kepler's Third Law (KeplersThirdLaw) and
by defining t... | ryanvarley/ExoData | exodata/equations.py | Python | mit | 24,480 | [
"VisIt"
] | ad61679a8d44606b2b717dbfaa1a25b37464069b85dbf51e300fe38b3b522056 |
#!/usr/bin/python2.6
#
# Copyright 2009 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless require... | danieldc/pyfakefs | fake_filesystem_test.py | Python | apache-2.0 | 110,176 | [
"VisIt"
] | c71a19703d7580db959bb8188855da5aca0ccdddfae40f7c8a07c212e664d68d |
"""
test_tflintrans.py: Test suite for the linear estimator :class:`TFLinTrans`
"""
from __future__ import print_function, division
import unittest
import numpy as np
# Add the path to the vampyre package and import it
import env
env.add_vp_path()
import vampyre as vp
def vamp_gauss_test(nz=100,ny=200,... | GAMPTeam/vampyre | test/test_solver/test_vamp.py | Python | mit | 12,495 | [
"Gaussian"
] | 52bdd7f9954aa5708189b39283bc1de568365c33d00fb46b54a6c8b3fff381c4 |
# -*- coding: utf-8 -*-
#
# conncomp.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the License, or
# ... | HBPNeurorobotics/nest-simulator | topology/examples/conncomp.py | Python | gpl-2.0 | 4,297 | [
"NEURON"
] | 4653996577d517c4e8c94c08de6ef1330a1256fce0c1c31a5e2d054bbf0ad256 |
"""
Maintain access to the schemas (input- and output file descriptions) used by the CEA. These are stored in the
``schemas.yml`` file. Reading it is supposed to be done through the :py:func:`cea.schemas.schemas`. The plugins
parameter allows reading in schemas from ``schemas.yml`` files defined in plugins.
"""
import... | architecture-building-systems/CEAforArcGIS | cea/schemas.py | Python | mit | 15,167 | [
"EPW"
] | 71f38347f00acfeabbf395032ac21512989986505971d868597a9f633d9e3049 |
#!/usr/bin/env ipython
from pylab import *
from numpy import *
from scipy.io.netcdf import netcdf_file
from datetime import datetime, time, timedelta
#------------ shared libraries:
"""
--- antes de modificar cosas, tener en cuenta los bugs en:
'../../shared_lib/COMENTARIOS.txt'
"""
import sys
sys.path.append('../../... | jimsrc/seatos | mcs/src/c_rebineo_group_Vmc.py | Python | mit | 4,422 | [
"NetCDF"
] | dc63124e4b20ff5b2b66a95f331fb34a645d2b33a8bfe62d362777050e7d1f77 |
"""
Tests for discussion pages
"""
from .helpers import UniqueCourseTest
from ..pages.studio.auto_auth import AutoAuthPage
from ..pages.lms.discussion_single_thread import DiscussionSingleThreadPage
from ..fixtures.course import CourseFixture
from ..fixtures.discussion import SingleThreadViewFixture, Thread, Response,... | XiaodunServerGroup/xiaodun-platform | common/test/acceptance/tests/test_discussion.py | Python | agpl-3.0 | 6,237 | [
"VisIt"
] | a56f650f94b57813a89ef9efbb4c8bcb7f79f226b590570658c40ecbb01e8583 |
"""@package generate_data
Script that generates Monte Carlo sim output for many cases at once, for specified initial distributions, sample rates, & other variables
"""
import sys
sys.path.append('../')
import cp_dynamics
import numpy as np
import matplotlib.pyplot as plt
import time
def etaCalc(k,kmax,dt):
dtest... | fatadama/estimation | challenge_problem/sim_data/generate_data.py | Python | gpl-2.0 | 5,753 | [
"Gaussian"
] | 522641880e3da8512c43b8b5255312d0374f1851f57358beb16fe980997c1927 |
# encoding: utf-8
"""
A lightweight Traits like module.
This is designed to provide a lightweight, simple, pure Python version of
many of the capabilities of enthought.traits. This includes:
* Validation
* Type specification with defaults
* Static and dynamic notification
* Basic predefined types
* An API that is si... | noslenfa/tdjangorest | uw/lib/python2.7/site-packages/IPython/utils/traitlets.py | Python | apache-2.0 | 47,142 | [
"Brian"
] | 6094d136b624fb1b823df8b8a7b1e9092f081e4303212a971190fd0894f1e851 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# --- BEGIN_HEADER ---
#
# Plumber - Tunnels traffic between two sockets
#
# Copyright (C) 2003-2009 The MiG Project lead by Brian Vinter
#
# This file is part of MiG.
#
# MiG is free software: you can redistribute it and/or modify
# it under the terms of the GNU General... | heromod/migrid | mig/vm-proxy/deprecated/proxy/plumber.py | Python | gpl-2.0 | 7,699 | [
"Brian"
] | 3c666e311a5117682cedecb96b44d265c5f7f4f1af8550d8e848d6e71f398316 |
"""
Base class for all tests in studio
"""
from bok_choy.web_app_test import WebAppTest
from regression.tests.helpers import LoginHelper, get_course_info
from regression.pages.studio.login_studio import StudioLogin
from regression.pages.studio.pages_page_studio import PagesPageExtended
from regression.pages.studio.gra... | raeeschachar/edx-e2e-mirror | regression/tests/studio/studio_base_test.py | Python | agpl-3.0 | 3,488 | [
"VisIt"
] | 86fd41504e2b63a19693a836442d649dfe81f4b3c10f9378c9be3b4508c480c6 |
import re
import os
import math
import itertools
import random
import logging
from sklearn.svm import SVR
from .. import __DEBUG__
__DFACTOR__ = .85
import sys
sys.path.append('..')
sys.path.append('/usr/lib/graphviz/python/')
sys.path.append('/usr/lib64/graphviz/python/')
#import gv
from pygraph.classes.graph imp... | vighneshbirodkar/summarize | summarize/Base/DocumentClass.py | Python | mit | 14,288 | [
"Gaussian"
] | 31fa81770ce7f0ad299911d8f06329527d413044f75c82009a204129f0856f7b |
# -*- coding: utf-8 -*-
"""
Tests for the text processor.
"""
from __future__ import unicode_literals
import json
from unittest import TestCase, main
from datetime import datetime
import mock
from nose.tools import * # noqa (PEP8 asserts)
from nose.plugins.attrib import attr
import nltk
from textblob.compat import P... | jcalbert/TextBlob | tests/test_blob.py | Python | mit | 39,803 | [
"Octopus"
] | 19ef3eb17c07cbc9a8b059c9d4215df8217dda7d61e3994fd505d1bbb8c650aa |
#!/usr/bin/env python
import argparse
import json
from cpt_gffParser import gffParse, gffWrite
from gff3 import feature_lambda, feature_test_type
from guanine_report import auth, post_result, student_id
# from guanine import GuanineClient
GUANINE_URL = "https://cpt.tamu.edu/guanine-backend/"
def validate(gff3):
... | TAMU-CPT/galaxy-tools | tools/464/assessment1-admin.py | Python | gpl-3.0 | 2,161 | [
"Galaxy"
] | 4bb9921ac4dd8ab929b1a7d8e5ccc80fc742efe2c0fa32017c64b21187e9849a |
"""Builds the CIFAR-10 network.
Summary of available functions:
# Compute input images and labels for training. If you would like to run
# evaluations, use input() instead.
inputs, labels = distorted_inputs()
# Compute inference on the model inputs to make a prediction.
predictions = inference(inputs)
# Compu... | rickyHong/Tensorflow_modi | tensorflow/models/image/cifar10/cifar10.py | Python | apache-2.0 | 17,758 | [
"Gaussian"
] | 19c05b25aefccfa9544daea1f86b477c454fbdd73595a5947dce35de8ac2124b |
# Copyright 2017 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | tensorflow/tensorflow | tensorflow/python/autograph/converters/break_statements.py | Python | apache-2.0 | 5,755 | [
"VisIt"
] | c60c53989e9addd7bb40d748b7b0058b1dd4b15ae56326dcda11e13076864c8c |
# $Id$
#
# Copyright (c) 2011, Novartis Institutes for BioMedical Research Inc.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above... | soerendip42/rdkit | rdkit/Chem/UnitTestInchi.py | Python | bsd-3-clause | 12,593 | [
"RDKit"
] | 8e87dab8d4bf5820f2f2ad075972a906a073a586e870020a5c34bd84bf9e9dff |
# ============================================================================
#
# Copyright (C) 2007-2012 Conceptive Engineering bvba. All rights reserved.
# www.conceptive.be / project-camelot@conceptive.be
#
# This file is part of the Camelot Library.
#
# This file may be used under the terms of the GNU General... | jeroendierckx/Camelot | camelot/admin/action/form_action.py | Python | gpl-2.0 | 10,679 | [
"VisIt"
] | 36a0393b7768ed82e6ba798a3f2ad2833cf6652c0d5d4bdea7a0a8a72f589a96 |
"""
Distance matrices and distance-based statistics (:mod:`skbio.stats.distance`)
=============================================================================
.. currentmodule:: skbio.stats.distance
This subpackage provides functionality for serializing, deserializing, and
manipulating dissimilarity and distance mat... | SamStudio8/scikit-bio | skbio/stats/distance/__init__.py | Python | bsd-3-clause | 5,771 | [
"scikit-bio"
] | 2262eae3e7dadcc490bfbf269ce07b6cf7b17473049ae9d471508c97a81eb4cd |
from __future__ import print_function, division
import unittest, numpy as np
from pyscf import gto, scf
from pyscf.nao import bse_iter
class KnowValues(unittest.TestCase):
def test_gw(self):
""" This is GW """
mol = gto.M( verbose = 1, atom = '''H 0 0 0; H 0.17 0.7 0.587''', basis = 'cc-pvdz',)
#mol = ... | gkc1000/pyscf | pyscf/nao/test/test_0083_gw_bse_h2_ae.py | Python | apache-2.0 | 1,314 | [
"PySCF"
] | 8f8696ff1ad3cfb35442037181f1491597195b195c6b14718ec7fcfe4467f0f3 |
"""Options manager for :class:`~diofant.polys.polytools.Poly` and public API functions."""
from __future__ import annotations
import re
import typing
from ..core import Basic, I
from ..core.sympify import sympify
from ..utilities import has_dups, numbered_symbols, topological_sort
from .polyerrors import FlagError, ... | diofant/diofant | diofant/polys/polyoptions.py | Python | bsd-3-clause | 19,551 | [
"Gaussian"
] | e5b75aeaebbaafa7ca2ec848a64feb45971603c936799cba1be8b38175f3b0f7 |
import numpy
import pickle
from chainer.functions.connection import linear
from chainer import link
class Linear(link.Link):
"""Linear layer (a.k.a. fully-connected layer).
This is a link that wraps the :func:`~chainer.functions.linear` function,
and holds a weight matrix ``W`` and optionally a bias vec... | truongdq/chainer | chainer/links/connection/linear.py | Python | mit | 2,710 | [
"Gaussian"
] | 9dd1a34e4333135d74f557da32d7b26e5e3675cf388be3abc097d0970cd01a38 |
"""
Self Organizing maps neural networks.
"""
import random
import math
class Map(object):
#Class Constructor
#@param dimensions: Number of input dimensions
#@param length: Length of the output grid
#@param filePath: The file path with the input data.
def __init__(self,dimensi... | jgabriellima/self_organization_map | som.py | Python | apache-2.0 | 6,152 | [
"Gaussian",
"NEURON"
] | 39e97d56c8c1cc50e92363d40aa71445605ead34b662dda19522d29d2eebafe5 |
#
# Copyright 2014, 2021 Lars Pastewka (U. Freiburg)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software... | libAtoms/matscipy | matscipy/contact_mechanics/DMT.py | Python | lgpl-2.1 | 2,003 | [
"Matscipy"
] | 150d8ed5380c346334f9c318dda268db174649b9c1984176b52792fcf82b04cb |
# pylint: disable=C0111
from lettuce import step
from lettuce import world
from lettuce import before
from pymongo import MongoClient
from nose.tools import assert_equals
from nose.tools import assert_in
REQUIRED_EVENT_FIELDS = [
'agent',
'event',
'event_source',
'event_type',
'host',
'ip',
... | carsongee/edx-platform | lms/djangoapps/courseware/features/events.py | Python | agpl-3.0 | 2,004 | [
"VisIt"
] | df3b4e22c2e02f29a0be464db3ba8ae9aa9f421a83ac808b548c4f02e8df448c |
# Issue 34 on github.
import moose
import moose.utils as mu
compt = moose.CubeMesh('/compt')
compt.volume = 1e-20
molecules = [ "ca", "S", "S1", "Sp" ]
pools = {}
tables = {}
for m in molecules:
pools[m] = moose.Pool('/compt/%s' % m)
t = moose.Table2("/table%s" % m)
tables[m] = t
moose.connect(t, 'req... | subhacom/moose-core | tests/issues/issue_34.py | Python | gpl-3.0 | 1,143 | [
"MOOSE"
] | c556e0c63c6070b264b5727e960d5fbb9ebe5cd2de6bbff2817441647afbcac8 |
#!/usr/bin/env python
import warnings
from CisRegModels import MYUTILS
from CisRegModels import MYMATH
import numpy as np
import subprocess
import sys
import argparse
parser = argparse.ArgumentParser(description='Provided a file of sequences and priorities (sorted), uses Bowtie to merge similar sequences.')
parser.ad... | Carldeboer/CisRegModels | mergeSeqsByBowtie.py | Python | gpl-3.0 | 5,977 | [
"Bowtie"
] | 5c0fc9cf7aa271e0ec42395ccb7c6ffe1ff305f51619fe5b527540aff4daf61e |
# encoding: utf-8
from __future__ import unicode_literals
import mimetypes
import os
import re
import sys
from tempfile import NamedTemporaryFile
from unicodedata import normalize
try:
from urllib.parse import urlparse
except ImportError:
from urlparse import urlparse
import requests
from twitter import Twit... | eleonrk/SickRage | lib/twitter/twitter_utils.py | Python | gpl-3.0 | 15,915 | [
"CASINO",
"MOE"
] | 6adab559a1358ee85fd6e1ebe3746c0354c7852c60da1b0d4f6e01f082d6f40b |
"""
This sample demonstrates a simple skill built with the Amazon Alexa Skills Kit.
The Intent Schema, Custom Slots, and Sample Utterances for this skill, as well
as testing instructions are located at http://amzn.to/1LzFrj6
For additional samples, visit the Alexa Skills Kit Getting Started guide at
http://amzn.to/1LG... | praddc/alexa-theCaptain | theCaptain/lambda_function.py | Python | mit | 6,603 | [
"VisIt"
] | a2e4a1a557b8da799beaa67567370e0edc2f929ba580ff4f1d330449f38d73ff |
""" Test functions for stats module
"""
from __future__ import division, print_function, absolute_import
import pickle
import re
import sys
import warnings
import numpy
import numpy as np
import scipy.stats as stats
import scipy.stats.distributions
from nose import SkipTest
from numpy import typecodes, array
from nu... | DailyActie/Surrogate-Model | 01-codes/scipy-master/scipy/stats/tests/test_distributions.py | Python | mit | 111,217 | [
"Gaussian"
] | 09c049eacd4d745dd848d030605a299deb2bbbe6f6ece9532360a48c3229f47b |
#!/usr/bin/env python
"""Creates a class file highlighting
Usage:
esom_tracer.py [--coverage] <BAM file> <NAMES file> <OUT file>
Synopsis:
Creates a CLASS file so that ESOM BestMatches points
colored by whether or not they are found in the BAM file.
By using SAM tools with the "-F 4" flag to filter... | Brazelton-Lab/lab_scripts | esom_tracer.py | Python | gpl-2.0 | 7,226 | [
"pysam"
] | f2ed1aeb68187e671bf5da3805f9b538e208fa1760a6831f92fde2187b06bc89 |
from galaxy.test.base.twilltestcase import TwillTestCase
# the numbering of the tests is essential as they
# will be executed in order, sorted by name
class Operations(TwillTestCase):
def test_00_first(self): # must be first
"Uploading data"
self.clear_history()
self.upload_file('1.bed', d... | jmchilton/galaxy-central | galaxy/test/functional/test_operations.py | Python | mit | 4,542 | [
"Galaxy"
] | 5dc430e235817d79eddb23a9f0454c951bc284906e7989b99ea012e27d99646a |
#####################################################################
# File: ReqManagerHandler.py
########################################################################
"""
:mod: ReqManagerHandler
.. module: ReqManagerHandler
:synopsis: Implementation of the RequestDB service in the DISET framework
"""
__RCSID__... | vmendez/DIRAC | RequestManagementSystem/Service/ReqManagerHandler.py | Python | gpl-3.0 | 12,229 | [
"DIRAC"
] | 80b4df50502d278500deb74619bf165158f573b7e19b23333e66a1b443f9391b |
#!/usr/bin/env python
"""
Terminates a DRMAA job if given a job id and (appropriate) user id.
"""
import errno
import json
import os
import pwd
import sys
#import drmaa
new_path = [ os.path.join( os.getcwd(), "lib" ) ]
new_path.extend( sys.path[1:] ) # remove scripts/ from the path
sys.path = new_path
from galaxy im... | mikel-egana-aranguren/SADI-Galaxy-Docker | galaxy-dist/scripts/drmaa_external_killer.py | Python | gpl-3.0 | 1,522 | [
"Galaxy"
] | 327d31096d74c076d41d5184b76de23c6e99f7693c0c0a552f110c5ec3d3f8c7 |
"""feedfinder: Find the Web feed for a Web page
http://www.aaronsw.com/2002/feedfinder/
Usage:
feed(uri) - returns feed found for a URI
feeds(uri) - returns all feeds found for a URI
>>> import feedfinder
>>> feedfinder.feed('scripting.com')
'http://scripting.com/rss.xml'
>>>
>>> feedfinder.fe... | samuelclay/NewsBlur | utils/feedfinder_pilgrim.py | Python | mit | 13,662 | [
"Brian"
] | 76f071942433054b8669244e0c0ccd2f037ec8b85cbeffabea720dfec4683c52 |
#!/usr/bin/env python
import unittest, sciunittest
from PyQuante.NumWrap import arange
from PyQuante.dft import dft
from PyQuante.Molecule import Molecule
energy = -7.811516 # changed 9/28/09 to reflect nwchem
name = "LiH/DFT"
def dissoc(**opts):
rmin = opts.get('rmin',0.65)
rmax = opts.get('rmax',1.01)
... | berquist/PyQuante | Tests/lih_dft.py | Python | bsd-3-clause | 1,567 | [
"NWChem"
] | e3fefdf1b1ded100277d46e34673c91e257652df7616005b0a30e23521264496 |
# coding=utf-8
'''Define Schema'''
from __future__ import absolute_import
import hashlib
from datetime import datetime
from flask import url_for, current_app
from mongoengine import fields, DENY
from werkzeug import security
from flask_babel import gettext as _
from flask_mail import Message
from flask_login import lo... | ruitian/firefly | firefly/models/user.py | Python | mit | 7,449 | [
"Firefly"
] | f46d8683d185390bfa0c19fc01e2b2acda9082f7154278753f60fff7e2b763ba |
# -*- coding: utf-8 -*-
#
# Picard, the next-generation MusicBrainz tagger
# Copyright (C) 2006-2007 Lukáš Lalinský
# Copyright (C) 2007 Javier Kohen
# Copyright (C) 2008 Philipp Wolfer
#
#
# This program is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public License
# as... | samj1912/picard | picard/script.py | Python | gpl-2.0 | 26,706 | [
"Brian"
] | 347e5a8003bfd959615f29a2fd1191096161db1c6f1e594dc5f102d59f619491 |
#-----------------------------------------------------------------
# _ast_gen.py
#
# Generates the AST Node classes from a specification given in
# a .yaml file
#
# The design of this module was inspired by astgen.py from the
# Python 2.5 code-base.
#
# Copyright (C) 2008-2011, Eli Bendersky
# License: BSD
#----------... | kk1987/pycparser | pycparser/_ast_gen.py | Python | bsd-3-clause | 8,671 | [
"VisIt"
] | 9aa20423d8680e4fc11e6f87a1546833941d4ec99b1eadfee3dd89cb4f7ad997 |
#!/usr/bin/env python
from __future__ import division
from numpy import *
from geode.random import *
from geode import *
import hashlib
import numpy
def test_sobol(filename=None):
m,n = 128,128
box = Box(0,(m,n,m))
sobol = Sobol(box)
print box
im = tile(1,(m,n,3)).astype(uint8)
count = m*n//100*10
for ... | mikest/geode | geode/random/test_random.py | Python | bsd-3-clause | 7,111 | [
"Gaussian"
] | f27481f9cfd4c6020283af5676f1c6d5cf5d2b3c2470468a939d2df0b4eb5b6e |
#!/usr/bin/env python
'''
Migrate old Galaxy tool shed to next gen Galaxy tool shed. Specifically, the tool archives stored as
files in the old tool shed will be migrated to mercurial repositories in the next gen tool shed. This
script can be run any number of times as it initially eliminates any current repositorie... | mikel-egana-aranguren/SADI-Galaxy-Docker | galaxy-dist/scripts/tool_shed/migrate_tools_to_repositories.py | Python | gpl-3.0 | 15,667 | [
"Galaxy",
"VisIt"
] | a504ea5b6f5f287b21c7577f28c3a8682293ac535d0985393a9554c7a971be29 |
# -*- coding: utf-8 -*-
# If you find this code useful for your research, please cite the following
# article accordingly:
#
# Vogt, Owen et al., Advanced Data Visualization in Astrophysics:
# the X3D Pathway, ApJ (2015).
#
# Copyright (C) 2015 Frédéric P.A. Vogt, Chris I. Owen
#
# This program is free softwar... | fpavogt/x3d-pathway | x3d_to_png/red_dice/red_dice_animation.py | Python | gpl-3.0 | 18,067 | [
"Mayavi"
] | b8d85655caf43e6abc00ddea1828ce26c217d52892f163001cc587eb63aca96f |
# -*- coding: utf-8 -*-
#
# Author: Travis Oliphant 2002-2011 with contributions from
# SciPy Developers 2004-2011
#
import warnings
from collections.abc import Iterable
from functools import wraps
import ctypes
import numpy as np
from scipy._lib.doccer import (extend_notes_in_docstring,
... | zerothi/scipy | scipy/stats/_continuous_distns.py | Python | bsd-3-clause | 280,541 | [
"CRYSTAL",
"DIRAC",
"Gaussian"
] | 0acf6ee240483bd46fbd52b8ada12462876ed2c38b6ea95a552da12b11af6b1a |
import logging
import re
from sqlalchemy.exc import IntegrityError
# dicom refers to pydicom library
import dicom
from dicom.errors import InvalidDicomError
from . import utils
#######################################################################################################################
# GLOBAL VARIABLES... | LREN-CHUV/mri-meta-extract | data_tracking/dicom_import.py | Python | apache-2.0 | 21,335 | [
"VisIt"
] | 1de7d3a60ce5e093d72c221fb6b76511fde2288427cb9321398f346a9c7facb3 |
import theano
import theano.tensor as T
from theano.sandbox.rng_mrg import MRG_RandomStreams
from theano.tensor.nnet.conv import conv2d
from theano.tensor.signal.downsample import max_pool_2d
from theano.tensor.shared_randomstreams import RandomStreams
import numpy as np
from toolbox import *
from modelbase import *
... | mrgloom/Theano-Lights | models/ffn_bn.py | Python | mit | 4,856 | [
"Gaussian"
] | bfa4d8809cc6d8407fd112f3fb66b5d7b1dcdd56acb5bb9aaa88220ce19d08bf |
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