text stringlengths 12 1.05M | repo_name stringlengths 5 86 | path stringlengths 4 191 | language stringclasses 1
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values | size int32 12 1.05M | keyword listlengths 1 23 | text_hash stringlengths 64 64 |
|---|---|---|---|---|---|---|---|
"""
==================================================
Automatic Relevance Determination Regression (ARD)
==================================================
Fit regression model with :ref:`bayesian_ridge_regression`.
Compared to the OLS (ordinary least squares) estimator, the coefficient
weights are slightly shifted ... | florian-f/sklearn | examples/linear_model/plot_ard.py | Python | bsd-3-clause | 2,517 | [
"Gaussian"
] | c1f13fac55f633fdc2b155a1bfc2d744a56054291e0ee68675136b558ab99a2c |
#-------------------------------------------------------------------------------
"""
ARCED IPOL demo app
A Review of Classic Edge Detectors
by Haldo Sponton and Juan Cardelino.
June 27, 2013
"""
#-------------------------------------------------------------------------------
from lib import base_app, build, http, imag... | juan-cardelino/matlab_demos | ipol_demo-light-1025b85/app_available/35/app.py | Python | gpl-2.0 | 12,282 | [
"Gaussian"
] | 493d9cef33a865375212f90c7119f22c24142025614a6dc61b1bac8db1911cd7 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import pytest
@pytest.mark.skip(reason="This is a long test")
def test_uccsd_2():
"""Test projective UCCSD on Ne using RHF/cc-pVDZ orbitals"""
import forte.proc.scc as scc
import forte
import psi4
ref_energy = -128.677999887 # from Evangelista, J. ... | evangelistalab/forte | tests/pytest/sparse_ci/srcc/test_uccsd_2.py | Python | lgpl-3.0 | 1,072 | [
"Psi4"
] | a080076af843c783d0a5b3fdac0306acfbc91018ba1910aa7bde7aa43194a54e |
"""
Effect of measurement noise on accuracy of fit
==============================================
Experimental noise often corrupts concentration profiles. When the diffusion
matrix is determined from noisy concentration profiles, the accuracy of the
estimation decreases when the intensity of the noise increases. Furt... | emmanuelle/multi-diffusion | examples/plot_effect_of_noise.py | Python | bsd-3-clause | 3,046 | [
"Gaussian"
] | 58c7fba53409df501c85efb41a0ad199a5ed7d7fe8dec0294761ae8e0f8eede1 |
#!/usr/bin/env python
from Tkinter import *
import Pmw
import AppShell
import sys, os
import string
from plotAscii import xdisplayfile
from tkSimpleDialog import Dialog
from plotAscii import transposeA
from readMDA import *
from mdaAscii import *
from pylab import *
legends=['best','upper right','upper left', 'lower... | sniemi/SamPy | sandbox/src1/pviewer/plot2d.py | Python | bsd-2-clause | 49,207 | [
"Gaussian"
] | 538acf47c12bba5015a911975b35e9bdea39b752239654619dde564072f79c2a |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module defines tools to analyze surface and adsorption related
quantities as well as related plots. If you use this module, please
consider citing the following works::
R. Tran, Z. Xu, B. Radhakri... | davidwaroquiers/pymatgen | pymatgen/analysis/surface_analysis.py | Python | mit | 82,171 | [
"VASP",
"pymatgen"
] | 6739603ec450913c348418f719186c03d2f124ca176f01dd4848aa6cb3dfbdbc |
"""
Test functions for multivariate normal distributions.
"""
from __future__ import division, print_function, absolute_import
import pickle
from numpy.testing import (assert_allclose, assert_almost_equal,
assert_array_almost_equal, assert_equal,
assert_array_les... | Gillu13/scipy | scipy/stats/tests/test_multivariate.py | Python | bsd-3-clause | 48,107 | [
"Gaussian"
] | 68569a93d897fb67bf66e89df7c07304d553e8bf56e5786e1291e62da7a8922e |
#!/usr/bin/python
#
# @author: Gaurav Rastogi (grastogi@avinetworks.com)
# Eric Anderson (eanderson@avinetworks.com)
# module_check: supported
#
# Copyright: (c) 2017 Gaurav Rastogi, <grastogi@avinetworks.com>
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
#
ANSIB... | alxgu/ansible | lib/ansible/modules/network/avi/avi_wafprofile.py | Python | gpl-3.0 | 3,819 | [
"VisIt"
] | fc7642cdf7451016bea4d8cf0a6582e560dec935f22e1e22d149149a97878783 |
import re
import BALL
from parametrization import *
class AmberParser:
def __init__(self):
self.LJLineParser = {
'RE' : self.__parseLennardJonesRE,
'AC' : self.__parseLennardJonesAC,
'SK' : self.__parseLennardJonesSK
}
def parse(self, input):
self.params = Parametrization()
inFile = open(input)
... | tkemmer/ball | data/Amber/converter/amberparser.py | Python | lgpl-2.1 | 6,046 | [
"Amber"
] | 00ee2dcdc409630900675e46fed5cc778eb1746027d373c06e217a177a18cad4 |
"""
Acceptance tests for studio related to the outline page.
"""
import json
from datetime import datetime, timedelta
import itertools
from pytz import UTC
from unittest import skip
from bok_choy.promise import EmptyPromise
from nose.plugins.attrib import attr
from ...pages.studio.settings_advanced import AdvancedSett... | nttks/edx-platform | common/test/acceptance/tests/studio/test_studio_outline.py | Python | agpl-3.0 | 81,737 | [
"VisIt"
] | c023fa6eb28e1b589623cc1c129d41bfe9657d77a5a536016d16c631511ee432 |
"""
Acceptance tests for Studio related to the container page.
The container page is used both for displaying units, and
for displaying containers within units.
"""
from nose.plugins.attrib import attr
from unittest import skip
from ...fixtures.course import XBlockFixtureDesc
from ...pages.studio.component_editor impo... | tiagochiavericosta/edx-platform | common/test/acceptance/tests/studio/test_studio_container.py | Python | agpl-3.0 | 52,539 | [
"VisIt"
] | 835ddf6a4e5c6531200abc699d0067e77d4b7521b20310171592ba9880cb2e7c |
#A* -------------------------------------------------------------------
#B* This file contains source code for the PyMOL computer program
#C* copyright 1998-2000 by Warren Lyford Delano of DeLano Scientific.
#D* -------------------------------------------------------------------
#E* It is unlawful to modify or remove ... | gratefulfrog/lib | python/chempy/hetatm.py | Python | gpl-2.0 | 8,113 | [
"ChemPy",
"PyMOL"
] | bca6d2eb2e1488abeb48b1b3f690a3d6259acdbb7ce4e01973cbfb1c8626862e |
"""Main entry point for distributed next-gen sequencing pipelines.
Handles running the full pipeline based on instructions
"""
import abc
from collections import defaultdict
import copy
import os
import sys
import resource
import tempfile
import yaml
from bcbio import log, heterogeneity, structural, utils
from bcbio... | elkingtonmcb/bcbio-nextgen | bcbio/pipeline/main.py | Python | mit | 23,092 | [
"Bowtie"
] | e373ee7ae7a43a3e48ab72603ce42df79eb3032541f853170384fada021e9453 |
from Products.Five.browser.pagetemplatefile import ViewPageTemplateFile
from Products.CMFCore.utils import getToolByName
from Products.Five.browser import BrowserView
def sendChangeEmail(object, event):##Object modified event will be passed in.... object that the object modified event occurs on will also be passed in
... | uwosh/uwosh.watchthis | uwosh/watchthis/browser/watchOrStopWatching.py | Python | gpl-2.0 | 4,770 | [
"VisIt"
] | bd4a1263970484091081cfd689549b6ab71c00d89df6b736c8cff3e247436f31 |
# Copyright 2016 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | ghchinoy/tensorflow | tensorflow/python/autograph/converters/arg_defaults.py | Python | apache-2.0 | 3,296 | [
"VisIt"
] | 042ff8e7048934b11f469841f0fc75e3ca4aba05b6e26cac9ae0d174db74a057 |
# coding: utf-8
#
# Copyright 2012 NAMD-EMAP-FGV
#
# This file is part of PyPLN. You can get more information at: http://pypln.org/.
#
# PyPLN is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 o... | flavioamieiro/pypln.backend | pypln/backend/workers/__init__.py | Python | gpl-3.0 | 1,362 | [
"NAMD"
] | e3a41eb04bdbe5bc5406cb900cdfd6a57d40a2ccf5a2131074db54377fea9982 |
# coding: utf-8
from __future__ import unicode_literals
swears = """
shit
fuck
shitting
fucking
fucked
shits
fucks
fuckers
pussy
bitch
bitches
asshole
assholes
cunt
cunts
pussies
shitty
gay
"""
swears = set([x for x in swears.splitlines() if len(x)])
bad_swears = """
faggot
faggots
nigger
niggers
"""
bad_swears = s... | cmyr/poetryutils2 | poetryutils2/wordsets.py | Python | mit | 3,629 | [
"exciting"
] | 26ef6371ab0d29c3f9321a70f356bb70e6bda3679d7e34f6b9a53f360d7bc185 |
import numpy as np
from ase import units
import sys
sys.path.append('.')
from AdsorptionParameters import *
#Changes: Added dictionary to include multiple objects.
def getEnergies(species):
p = adsorptionparameters(species)
return p.get('Eads')
#return np.array([-0.25,-0.25,-0.25,-0.25,... | auag92/n2dm | Asap-3.8.4/Python/asap3/nanoparticle_mc/langmuirExpression.py | Python | mit | 1,446 | [
"ASE"
] | d8087f480405851578c7577c612051c155dfc4c714f82e6af46cf0362ec35a6e |
# Copyright 2021 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | yongtang/tensorflow | tensorflow/python/util/nest.py | Python | apache-2.0 | 66,396 | [
"VisIt"
] | 13c2e7c35597429e889a037793f9d8d5552c9907ca43962a4e847e052a182c1d |
#!/usr/bin/python
#Author: Lori Glenwinkel
# CREATE DATE: 2014
# DESCRIPTION: Main TargetOrtho script, controls execution of each module, calls threading script to process modules for each genome and each input motif in parrallel
import os
import sys
import datetime
from optparse import OptionParser
import scipy.stats
... | loriglenwinkel/TargetOrtho | run/scripts/TargetOrtho.py | Python | mit | 15,589 | [
"Galaxy"
] | d7176e38f49a62966a3d46a0ea1c5106c7942c9036f8fa1872bde4dba4e0d9cc |
# Copyright (c) 2009-2014 Upi Tamminen <desaster@gmail.com>
# See the COPYRIGHT file for more information
"""
This module contains ...
"""
import json
from os import path
from random import randint
from twisted.python import log
class UserDB(object):
"""
By Walter de Jong <walter@sara.nl>
"""
def _... | gamma589/honeypot | cowrie/cowrie/core/auth.py | Python | gpl-2.0 | 6,973 | [
"VisIt"
] | 005bd9514eff3e574e291f99a2a4dc35d833fac318e8f12d6eaa00f93f635e31 |
from django.utils.timezone import get_default_timezone
from django.conf import settings
from tao.models import Job, GlobalParameter
from tao.tests import helper
from tao.tests.integration_tests.helper import LiveServerMGFTest
from tao.tests.support.factories import UserFactory, JobFactory
import os
class ListJobsTe... | IntersectAustralia/asvo-tao | web/tao/tests/integration_tests/list_jobs_tests.py | Python | gpl-3.0 | 6,681 | [
"VisIt"
] | 025829b901db4aec4c0130dee9870b176faaef53dd801e0d5779c4a045f82908 |
# -*- coding: utf-8 -*-
import uuid
import json
import pandas as pd
from IPython.display import display_html
from mpcontribs.io.core import mp_id_pattern
from mpcontribs.io.core.utils import clean_value
from mpcontribs.io.core.recdict import RecursiveDict
from urllib.parse import urlparse
class Table(pd.DataFrame):
... | materialsproject/MPContribs | mpcontribs-io/mpcontribs/io/core/components/tdata.py | Python | mit | 7,834 | [
"pymatgen"
] | 02fdaac003944326db1456ec0d2fc8778e80af346b65bd4e26fc534569f6650f |
#!/usr/bin/python
# -*- coding: utf-8 -*-
# copyright Julien TREBOSC 2012-2013
# check that variable PYTHONPATH points to the right folder for brukerIO.py library
from __future__ import division
Descript="""
OK so what is this program doing exactly ?
Not much : it reads 2D SER file. Applies apodisation on the t2 time... | jtrebosc/JTutils | CpyBin/apod2D_.py | Python | bsd-3-clause | 6,697 | [
"Gaussian"
] | 1fe98ecda28ce37bd767c7f0d8360b2a96f171c13287cc73a8a074ef9f460c51 |
../../../../../../../share/pyshared/orca/scripts/apps/Mozilla/script.py | Alberto-Beralix/Beralix | i386-squashfs-root/usr/lib/python2.7/dist-packages/orca/scripts/apps/Mozilla/script.py | Python | gpl-3.0 | 71 | [
"ORCA"
] | a4206f887f9c4131ac9d71c914072602f85459e36fc4a00e60de062c3056ba05 |
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class P4est(AutotoolsPackage):
"""Dynamic management of a collection (a forest) of adaptive octr... | LLNL/spack | var/spack/repos/builtin/packages/p4est/package.py | Python | lgpl-2.1 | 3,336 | [
"VTK"
] | bf19827cedf376b91ecd7da4c89f5627e06dc09228605457ee9b3aeb8d5fd9d0 |
"""
Tests for folding at home generator suite in perses
TODO:
* Write tests
"""
import os
from unittest import skipIf
running_on_github_actions = os.environ.get('GITHUB_ACTIONS', None) == 'true'
#default arguments for tests
DEFAULT_PLATFORM_NAME='CPU'
DEFAULT_PROJ_ID = {'complex': 1000, 'solvent': 1001, 'vacuum': 1... | choderalab/perses | perses/tests/test_fah.py | Python | mit | 4,694 | [
"Amber"
] | 5965db7c76fb884ba7b294b92805bcb59ec9d1f6f9fe5c46fe3ff1bdeb4aad71 |
from __future__ import division, print_function, absolute_import
import warnings
import numpy as np
from numpy import array
from numpy.testing import (assert_array_almost_equal, assert_array_equal,
run_module_suite, assert_raises, assert_allclose)
from scipy import signal
window_funcs = [
... | valexandersaulys/airbnb_kaggle_contest | venv/lib/python3.4/site-packages/scipy/signal/tests/test_windows.py | Python | gpl-2.0 | 9,476 | [
"Gaussian"
] | 5118c42cc97e41bda3f285751e73e7567c8561d2364d21295e4635d32229a0f6 |
#!/usr/bin/env python
import os
import vtk
import math
import numpy
from paraview.simple import *
import paraview.servermanager
#RootFolder = '/Volumes/WAILERS/UCI/Collaborators/Marcos/Data/NoFoldExperiment-TimeVaryingData/18C/Control'
#File = 'CA_9_18C_Ctrl_A1'
FilePath = raw_input("prompt")
S = ExtractSurface(Inp... | vianamp/Utils | ImaginalDisk/python/makeboxEctopic2.py | Python | gpl-3.0 | 676 | [
"ParaView",
"VTK"
] | 40aa91f1b044b93f3bf5aa4293334cbcec71f8248b31e01023f8f73a14135192 |
import logging
import pytest
import mongomock
from bripipetools import model as docs
from bripipetools import dbification
logging.basicConfig(level=logging.INFO)
logger = logging.getLogger(__name__)
@pytest.fixture(scope='function')
def mock_db():
# GIVEN a mocked version of the TG3 Mongo database
logger.i... | BenaroyaResearch/bripipetools | tests/test_dbify.py | Python | mit | 24,454 | [
"Galaxy"
] | f0165d82b14add9208b87c0c698090cc777e516bd2aa5a99470b0725ad0ea181 |
# -*- coding: utf8 -*-
#-----------------------------------------------------------------------------
# Copyright (c) 2010-2012 Brian Granger, Min Ragan-Kelley
#
# This file is part of pyzmq
#
# Distributed under the terms of the New BSD License. The full license is in
# the file COPYING.BSD, distributed as part o... | IsCoolEntertainment/debpkg_python-pyzmq | zmq/tests/test_stopwatch.py | Python | lgpl-3.0 | 1,534 | [
"Brian"
] | 8da7d5ea3f340b82ceff95ac8c8b3ed7ab8fc6f786b118eafdef0865cb8b925c |
# coding=utf-8
"""
Unit tests for the packaging system
"""
# from octopus.modules.es.testindex import ESTestCase
from unittest import TestCase
from service import packages
from octopus.modules.store import store
from copy import deepcopy
from service.tests import fixtures
from octopus.core import app
from lxml import... | JiscPER/jper | service/tests/unit/test_packager.py | Python | apache-2.0 | 31,184 | [
"Brian",
"Octopus"
] | 2acf40aa48730a31bcf3a9cc32b9c85eb0d6832005d883a0f46451672eb9e43d |
"""Utilities used in the Kadenze Academy Course on Deep Learning w/ Tensorflow.
Creative Applications of Deep Learning w/ Tensorflow.
Kadenze, Inc.
Parag K. Mital
Copyright Parag K. Mital, June 2016.
"""
import matplotlib.pyplot as plt
import tensorflow as tf
import urllib
import numpy as np
import zipfile
import os
... | dariox2/CADL | test/libs/utils.py | Python | apache-2.0 | 9,994 | [
"Gaussian"
] | c1e0e2604bd620a202045e5438673d110e2d76037a9fc452060374f033954b53 |
# Docstrings for generated ufuncs
#
# The syntax is designed to look like the function add_newdoc is being
# called from numpy.lib, but in this file add_newdoc puts the
# docstrings in a dictionary. This dictionary is used in
# generate_ufuncs.py to generate the docstrings for the ufuncs in
# scipy.special at the C lev... | nonhermitian/scipy | scipy/special/add_newdocs.py | Python | bsd-3-clause | 155,761 | [
"Gaussian"
] | fb9a0d894368af70ed37196370fa42e403843d49e6bd603d47bd4ca6d958aaed |
#!/usr/bin/env python
from __future__ import print_function
"""
Monitoring tools.
Author: Mateusz Malinowski
Email: mmalinow@mpi-inf.mpg.de
"""
from .read_write import list2file
def _dirac(pred, gt):
return int(pred==gt)
def print_qa(questions, answers_gt, answers_gt_original, answers_pred,
era, sim... | mateuszmalinowski/visual_turing_test-tutorial | kraino/utils/monitor.py | Python | mit | 1,591 | [
"DIRAC"
] | 9659dd5a0745e7f8beb577cbc38d8dd450598f6f884dbd923f95f57f701284a8 |
#!/usr/bin/python2.4
# -*- coding: utf-8 -*-
#
# Copyright (C) 2010 Google Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless ... | MapofLife/MOL | earthengine/google-api-python-client/samples/customsearch/main.py | Python | bsd-3-clause | 1,303 | [
"VisIt"
] | 5cbd53db563be82e6be2f7af884d6f6a4d2458fb8961042efd421a76b9cea665 |
"""OVK learning, unit tests.
The :mod:`sklearn.tests.test_KernelOVKRidge` tests OVK ridge regression
estimator.
"""
from sklearn.utils.estimator_checks import check_estimator
from numpy.random import rand, randn, seed
from numpy import sort, pi, sin, cos, array, dot, arange, newaxis, cov
from numpy.linalg import norm... | RomainBrault/operalib | operalib/tests/test_KernelRidge_dec.py | Python | bsd-3-clause | 4,307 | [
"Gaussian"
] | 1ebc3b142e39450fbe5dbe5c95364618a2209d5a866a01be968e992906de9676 |
# $Id$
#
# Copyright (C) 2007-2010 Greg Landrum
#
# @@ All Rights Reserved @@
# This file is part of the RDKit.
# The contents are covered by the terms of the BSD license
# which is included in the file license.txt, found at the root
# of the RDKit source tree.
#
""" General descriptor testing code
"""
from __f... | AlexanderSavelyev/rdkit | rdkit/Chem/UnitTestDescriptors.py | Python | bsd-3-clause | 3,710 | [
"RDKit"
] | 01130fb9132aff1c2b87a64e3c0d82d5b2edca4dbfe1eb0ac0e57bec62fec449 |
#!/usr/bin/python
#
# Created on Aug 25, 2016
# @author: Gaurav Rastogi (grastogi@avinetworks.com)
# Eric Anderson (eanderson@avinetworks.com)
# module_check: supported
# Avi Version: 17.1.1
#
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the te... | kbrebanov/ansible | lib/ansible/modules/network/avi/avi_applicationpersistenceprofile.py | Python | gpl-3.0 | 6,509 | [
"VisIt"
] | 3d836e6ee9d90a9fa1788a029f4f37e32ba50bff64027c17f4f2e7a80268998e |
"""
Add container iteration powers to wrapped C++ classes
"""
from typehandlers.base import ForwardWrapperBase
from typehandlers import codesink
from pytypeobject import PyTypeObject
import utils
class IterNextWrapper(ForwardWrapperBase):
'''
tp_iternext wrapper
'''
HAVE_RETURN_VALUE = True
def... | JBonsink/GSOC-2013 | tools/ns-allinone-3.14.1/pybindgen-0.15.0.809/pybindgen/cppclass_container.py | Python | gpl-3.0 | 10,151 | [
"VisIt"
] | 6d05f665f0de6b56addb45643fbae913c05a18014c1efbaea4e4131dba8c13e8 |
import ast
program1 = 'a = 2\nb = a + 3'
tree = ast.parse(program1)
class RecursiveVisitor(ast.NodeVisitor):
""" example recursive visitor """
def recursive(func):
""" decorator to make visitor work recursive """
def wrapper(self,node):
func(self,node)
for child in a... | Betaboxguugi/P6 | code/examples/ast_examples/example_1/example_1.py | Python | gpl-3.0 | 2,968 | [
"VisIt"
] | 103c208973ef88064cfa9606f3f8cac0908a81353a1bb17a81ce3f8c5cae2d50 |
# Copyright (c) 2007-2009 Pedro Matiello <pmatiello@gmail.com>
#
# Permission is hereby granted, free of charge, to any person
# obtaining a copy of this software and associated documentation
# files (the "Software"), to deal in the Software without
# restriction, including without limitation the rights to use,
# copy,... | wdv4758h/ZipPy | edu.uci.python.benchmark/src/benchmarks/python-graph/core/pygraph/algorithms/accessibility.py | Python | bsd-3-clause | 10,321 | [
"VisIt"
] | 22b665d9dc1dd2fd5d378ca3ba9f34a57861a28ada3a154241ea42b2b97d54bd |
##############################################################################
# MDTraj: A Python Library for Loading, Saving, and Manipulating
# Molecular Dynamics Trajectories.
# Copyright 2012-2014 Stanford University and the Authors
#
# Authors: Robert McGibbon
# Contributors: Kyle A Beauchamp
#
# MDTraj is... | swails/mdtraj | mdtraj/tests/test_trajectory.py | Python | lgpl-2.1 | 26,198 | [
"MDTraj"
] | 3cb8736e9eb0c7a95b394df54f78549d44a8cddd6d0e7a7337d6faafdb6d0581 |
import unittest,types,time
from DIRAC.RequestManagementSystem.DB.RequestDB import RequestDB
from DIRAC.RequestManagementSystem.Client.DataManagementRequest import DataManagementRequest
class RequestDBTestCase(unittest.TestCase):
""" Base class for the JobDB test cases
"""
def setUp(self):
self.requestDB = R... | sposs/DIRAC | RequestManagementSystem/DB/test/TestRequestDB.py | Python | gpl-3.0 | 2,149 | [
"DIRAC"
] | fa32c526d0dc53bd79fb99dfcb00d331be35774357bcd6488320acdd37f5aed1 |
from datetime import datetime
import pkg_resources
pkg_resources.require("SQLObject>=0.8")
pkg_resources.require("TurboGears>=1.0.4.4")
import sys
from os import getcwd
from os.path import dirname, exists, join
import cherrypy
import turbogears
cherrypy.lowercase_api = True
from turbogears.database import... | pbarton666/buzz_bot | bot_project/buzzbot/model.py | Python | mit | 11,359 | [
"VisIt"
] | a08cb8b1755414d77efdc1afa1c3d50bbbec292cb6bb577e46d44870fba5bb62 |
"""
Note: this class is directly adapted from the GPy package, and is changed to plot 1D Gaussian processes.
"""
import warnings
from GPy.plotting.matplot_dep.base_plots import x_frame1D, gpplot, x_frame2D
# Copyright (c) 2012, GPy authors (see AUTHORS.txt).
# Licensed under the BSD 3-clause license (see LICENSE.tx... | adezfouli/savigp | GP/plot.py | Python | apache-2.0 | 7,265 | [
"Gaussian"
] | fb869c503a718a0e9cae9ef47f58e34b1a8bf49c1687c3b909717b64f00078cf |
# -*- coding: utf-8 -*-
"""
Created on Tue Mar 11 11:38:10 2014
@author: kshmirko
"""
import time
import numpy as np
import matplotlib.pyplot as plt
import scipy.ndimage
import matplotlib.patches
plt.figure(figsize=(10,10))
ax1 = plt.subplot(221)
ax2 = plt.subplot(222)
ax3 = plt.subplot(223)
ax4 = plt.subplot(224)
... | kshmirko/find-jet-kernel | tmp.py | Python | gpl-2.0 | 2,952 | [
"Gaussian"
] | 6cc5eb93a93c567873538e218d703d9e375ec5438312e60d2f3b7cff581813e4 |
# opemm imports
import simtk.openmm as mm
# ParmEd imports
from chemistry.charmm.parameters import CharmmParameterSet
#import cProfile
#import pstats
#import StringIO
import TorsionScanSet, TorsionFitModel
import glob
from pymc import MCMC
#from memory_profiler import profile
param = CharmmParameterSet('../../charmm_... | hainm/Torsions | examples/pyrrol/pyrrol_sampling.py | Python | gpl-2.0 | 1,143 | [
"CHARMM",
"OpenMM"
] | 59d40dabdc92fb225868e01a071b0265c9db4809efe4250ecf0c174d8e743000 |
#!/usr/bin/env python
__author__ = 'Mike McCann,Duane Edgington,Reiko Michisaki'
__copyright__ = '2013'
__license__ = 'GPL v3'
__contact__ = 'duane at mbari.org'
__doc__ = '''
Master loader for all CANON activities in September 2013
Mike McCann; Modified from Duane Edgington and Reiko Michisaki's work
MBARI ... | google-code-export/stoqs | loaders/CANON/loadCANON_september2013.py | Python | gpl-3.0 | 21,367 | [
"NetCDF"
] | 221f5ec0430a7f75427bbe33aabf6a2a28b078ad3d4fd7e16d1cbb862a4315d3 |
#!/usr/bin/env python3
#pylint: disable=missing-docstring
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
... | nuclear-wizard/moose | python/chigger/tests/field_data/field_data.py | Python | lgpl-2.1 | 503 | [
"MOOSE"
] | 61b67a88173ccb84f049fada43c304d0314af0a82ddc1ac3c746e035980c8f45 |
"""
Processes for Weather Classification
Author: Nils Hempelmann (nils.hempelmann@lsce.ipsl.fr)
"""
from flyingpigeon.datafetch import _PRESSUREDATA_
from flyingpigeon.weatherregimes import _TIMEREGIONS_
from flyingpigeon.log import init_process_logger
from pywps.Process import WPSProcess
import logging
logger = logg... | KatiRG/flyingpigeon | flyingpigeon/processes/wps_weatherregimes_projection.py | Python | apache-2.0 | 11,891 | [
"NetCDF"
] | c3b20f0c74ce3dff6e3e6dfb713e8a8e4b10a58b79214758a67381cbb498ea1d |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import vtk
def main():
titles = list()
textMappers = list()
textActors = list()
uGrids = list()
mappers = list()
actors = list()
renderers = list()
uGrids.append(MakeUnstructuredGrid(
vtk.vtkQuadraticEdge()))
titles.append("V... | lorensen/VTKExamples | src/Python/GeometricObjects/IsoparametricCellsDemo.py | Python | apache-2.0 | 7,975 | [
"VTK"
] | 8af4f092ea581bba46e9b77b5ab7992499171f455fbe769ac948a37e0066c6e9 |
"""
Courseware views functions
"""
import logging
import urllib
import json
from collections import defaultdict
from django.utils import translation
from django.utils.translation import ugettext as _
from django.conf import settings
from django.core.context_processors import csrf
from django.core.exceptions import P... | sudheerchintala/LearnEraPlatForm | lms/djangoapps/courseware/views.py | Python | agpl-3.0 | 38,476 | [
"VisIt"
] | 39bc27967c58e1cc56b4558b1dca0082e24ccdf0155ba37f8d3e7c30643c76ea |
# Thin convenience wrapper for BioPython's SeqIO code
# Copyright (C) 2012 Kai Blin <kai.blin@biotech.uni-tuebingen.de>
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 3 of the ... | kblin/bioinf-helperlibs | helperlibs/bio/seqio.py | Python | gpl-3.0 | 6,609 | [
"Biopython"
] | 164a373fe74d6eae0664a2b2ed14335c6c6801ce89b8f9fb5b8ff40df3912cb1 |
#!/usr/bin/env python3
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
#* https://www.gnu.org/licenses/lgp... | nuclear-wizard/moose | python/peacock/tests/input_tab/InputFile/test_InputFile.py | Python | lgpl-2.1 | 2,790 | [
"MOOSE"
] | e2428cc07a63bc79d8b5a1e3cdb77caf2170781f433fa455fe381706c5ec2fee |
"""
This file is part of Giswater 3
The program is free software: you can redistribute it and/or modify it under the terms of the GNU
General Public License as published by the Free Software Foundation, either version 3 of the License,
or (at your option) any later version.
"""
# -*- coding: utf-8 -*-
import os
from q... | Giswater/giswater_qgis_plugin | core/ui/ui_manager.py | Python | gpl-3.0 | 12,453 | [
"VisIt"
] | 7e3e3d6ebd0567566f6dfdf64f10716d39c872c473bab6fbf0bbeede965f8ce0 |
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module implements representations of slabs and surfaces, as well as
algorithms for generating them. If you use this module, please consider
citing the following work::
R. Tran, Z. Xu, B. Radhakrishnan, D. Winston... | materialsproject/pymatgen | pymatgen/core/surface.py | Python | mit | 86,389 | [
"pymatgen"
] | 88bdb4415b500fcf148efe3bf1d0a6b31130d9b34384b2880e7282a389da0f10 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
# Copyright (C) 2011 Mehmet Atakan Gürkan
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License version 3 as
# published by the Free Software Foundation.
#
# This program is distributed i... | digitalvapor/PySkyAlmanac | sabanci/skyalmanac_biling.py | Python | gpl-3.0 | 16,535 | [
"Galaxy"
] | d1db8488cbb22f45063c05f334083bafbaa57200913e6e8c02df14ef483b181f |
#! /bin/usr/env python
# D.J. Bennett
# 24/03/2014
"""
pglt alignment tools
"""
# PACKAGES
import os
import re
import random
import numpy as np
from Bio import SeqIO
from Bio import AlignIO
from Bio.Seq import Seq
from Bio.SeqRecord import SeqRecord
from Bio.Align import MultipleSeqAlignment
from Bio.Blast.Application... | DomBennett/pG-lt | pglt/tools/alignment_tools.py | Python | gpl-2.0 | 22,838 | [
"BLAST"
] | bdd910295c8d59f0f96b47842572e088fabbe40b86a6a5d41a29eb38f2c017e4 |
# demonstrate 3d postprocessing with yade
#
# 1. qt.SnapshotEngine saves images of the 3d view as it appears on the screen periodically
# makeVideo is then used to make real movie from those images
# 2. VTKRecorder saves data in files which can be opened with Paraview
# see the User's manual for an intro to Parav... | bcharlas/mytrunk | doc/sphinx/tutorial/05-3d-postprocessing.py | Python | gpl-2.0 | 1,752 | [
"ParaView",
"VTK"
] | 117ecad094af4e5edf8855d1b19d03b0f9e20b7b2ad704514dbd15121d4ef4e7 |
# -*- coding: utf-8 -*-
#
from __future__ import print_function
import helpers
import numpy as np
import matplotlib.pyplot as plt
import pytest
def plot1():
# Make plot with vertical (default) colorbar
fig = plt.figure()
ax = fig.add_subplot(111)
np.random.seed(123)
data = np.clip(np.random.ran... | danielhkl/matplotlib2tikz | test/test_noise.py | Python | mit | 1,577 | [
"Gaussian"
] | dada23d60821f5b9eeb8777207874a12d4c3306228494ca1f49d9bf784585a7a |
import logging
import json
import copy
logger = logging.getLogger(__name__)
logger.setLevel(logging.DEBUG)
matchingList = { #key: entry field. value: don't care value.
'srcMac': '00:00:00:00:00:00', \
'dstMac': '00:00:00:00:00:00', \
'dlType': '0x0', \
'srcIP': '0.0.0.0', \
'dstIP': '0.0.0.0', \
'srcPort': '0', \
'ds... | starbops/OpenADM | core/src/floodlight_modules/simulate.py | Python | gpl-2.0 | 7,817 | [
"VisIt"
] | fb0548abe8a4387d53f9f4e5d9d4daddf36855e884c7d092bd8a45c0d9de0e6c |
#!/usr/bin/env python
'''
An efficient einsum function using BLAS or TBLIS (https://github.com/devinamatthews/tblis)
as the tensor contraction engine. By default, pyscf.lib.einsum calls BLAS gemm
functions for tensor contraction. If tblis is available (see the installation
instruction http://pyscf.org/install.html#tbl... | sunqm/pyscf | examples/tools/12-einsum.py | Python | apache-2.0 | 923 | [
"PySCF"
] | f2cc1e7719d3acdb8bfe642ee89cfc45bd85011d3dcb215322469c9e1edaab45 |
from __future__ import division, print_function, absolute_import
import sys
import subprocess
MODULES = [
"scipy.cluster",
"scipy.cluster.vq",
"scipy.cluster.hierarchy",
"scipy.constants",
"scipy.fft",
"scipy.fftpack",
"scipy.integrate",
"scipy.interpolate",
"scipy.io",
"scipy... | gertingold/scipy | scipy/_lib/tests/test_import_cycles.py | Python | bsd-3-clause | 1,301 | [
"NetCDF"
] | 103b0ccc8deca1db00da69519eeb0b3edb053aa2933b8fe288064e28cb00d3d2 |
from django.db import models
from django.core.mail import send_mail
from django.core.urlresolvers import reverse
import os
import urllib
import uuid
# Create your models here.
class Subscriber(models.Model):
email = models.EmailField(max_length=254)
active = models.BooleanField(default=False)
confirm_key... | zrisher/webapp-public | webapp/apps/register/models.py | Python | mit | 1,390 | [
"VisIt"
] | 365de4caa295fbe8a22232dd3fc92843b702b8db64cc59c0c22bf685a47b08d7 |
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
from DIRAC.AccountingSystem.private.Policies.JobPolicy import JobPolicy as myJobPolicy
gPoliciesList = {
'Job': myJobPolicy(),
'WMSHistory': myJobPolicy(),
'Pilot': myJobPolicy(),
'Null': False... | yujikato/DIRAC | src/DIRAC/AccountingSystem/private/Policies/__init__.py | Python | gpl-3.0 | 323 | [
"DIRAC"
] | 0dd9353facc33728c4fa8ea1945262c517ceb6db0ed947dc5c5f9307244463b4 |
'''
Created on Mar 28, 2012
@author: jan
'''
import random
import numpy as np
from scipy.stats import norm, expon, gamma
from scipy.spatial.distance import squareform
def gaussian_influence(mu, width):
''' creates a 2D-function for gaussian influence sphere'''
return lambda x, y: np.exp(-width * ((x - mu[0])... | Huitzilo/FUImaging | regnmf/datamaker.py | Python | mit | 6,851 | [
"Gaussian"
] | 67695402116e762bb4c12b144c12611bae2b2d76db357837cecb73b0bf8d6999 |
# coding: utf-8
"""Parser for HTML fragments used on MDN.
This is designed to be a foundation for more specific tasks, such as
extracting compatibility data from MDN pages, or validating API data when
an HTML subset is allowed.
HTML is actually unparsable, according to smart people:
http://trevorjim.com/a-grammar-for... | jwhitlock/web-platform-compat | mdn/html.py | Python | mpl-2.0 | 22,029 | [
"VisIt"
] | d3da318e0ce2da8c294b64052342f56542b3531004ca4a59fb0b24e3f6bb7cd7 |
# Must be run with 'ipython --gui=wx --pylab=wx' and then 'run plot.py'
import hf
from matplotlib import pyplot as plt
from scipy.interpolate import interp1d
from mayavi import mlab
import numpy as np
import os
"""
# Run fortran code
os.system("gfortran hf.F90 -o hf && ./hf")
# Read results from fortran code
data ... | sirmarcel/simple-hf | plot.py | Python | bsd-3-clause | 2,494 | [
"Mayavi"
] | cc14356efc2e7f1a02b27311d4a2909effc43fdee34488a49fca68a77f48198b |
#!/usr/bin/python
########################################################################## RAD4SNPs:##############################################################################
# A set of Python scripts to select and validate independent SNPs markers from a list of read files #
#################################... | glassalle/Rad4Snps | RAD4SNPs_FinalSQLExtract.py | Python | gpl-3.0 | 4,571 | [
"pysam"
] | 770c92dd7c63671b4e4c7331a84da1a82459a381352aced4da9e464f39c32f50 |
# coding: utf-8
from __future__ import unicode_literals
import unittest
import os
from pymatgen.analysis.ewald import EwaldSummation, EwaldMinimizer
from pymatgen.io.vaspio.vasp_input import Poscar
import numpy as np
test_dir = os.path.join(os.path.dirname(__file__), "..", "..", "..",
'test_... | Dioptas/pymatgen | pymatgen/analysis/tests/test_ewald.py | Python | mit | 4,268 | [
"pymatgen"
] | 9c7c197fcdea4352f86a772c143b06afda0ad9c4a218ddec7dfd9847a42ffc79 |
"""Physical constants of use in the sensitivity calculations."""
import units
### Avogadro constant
Avogadro = 6.02214129E+23 * (1./units.mole)
N_A = Avogadro
### Electron mass
electron_mass = 0.510998928 * units.MeV
m_e = electron_mass | jmalbos/pybbsens | pybbsens/constants.py | Python | mit | 239 | [
"Avogadro"
] | 1bb5e485876d1c9ac841d6331cf9dc5e4e867481c789f02b62a842175c088f21 |
'''
Nacker is a tool to circumvent 802.1x Network Access Control (NAC) on
a wired LAN.
Copyright (C) 2013 Carsten Maartmann-Moe
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of t... | mehulsbhatt/nacker | caravan/dhcp.py | Python | gpl-2.0 | 2,161 | [
"MOE"
] | 59e1427267dfc9f6401459f9da052fb41d626da6fbd72f2e1549862c0c6f8148 |
#!/usr/bin/env python
from __future__ import absolute_import, division, print_function
# ----------------------------------------------------------------------------
# Copyright (c) 2013--, scikit-bio development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COP... | JWDebelius/scikit-bio | skbio/diversity/alpha/_chao1.py | Python | bsd-3-clause | 6,351 | [
"scikit-bio"
] | 1550bc13c90be3a462a9fb2d3accfac24a717325d8ae8395ad3ae38013f70bde |
# ----------------------------------------------------------------------------
# Copyright (c) 2013--, scikit-bio development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# --------------------------------------------... | Achuth17/scikit-bio | skbio/tree/_tree.py | Python | bsd-3-clause | 90,475 | [
"VisIt",
"scikit-bio"
] | c164923594dadf5b32f675cb7c4bfbb0b3f56d1dc32166a39498c9c533e8246b |
# -*- coding: utf-8 -*-
"""
===========================================================
1D Wasserstein barycenter demo for Unbalanced distributions
===========================================================
This example illustrates the computation of regularized Wassersyein Barycenter
as proposed in [10] for Unbalanc... | rflamary/POT | examples/plot_UOT_barycenter_1D.py | Python | mit | 3,848 | [
"Gaussian"
] | 912f4f03be54c025b674c562d224c99373f02fdb41a93d5996f479c2df0fe430 |
""" PDP
PDP ( PolicyDecisionPoint ) is the back-end for the PolicySystem. It discovers
the policies, finds the best match, evaluates them, merges their results taking
the most penalizing one, computes the set of actions to be triggered and returns
all the information to the PEP which will enforce the actions.
... | arrabito/DIRAC | ResourceStatusSystem/PolicySystem/PDP.py | Python | gpl-3.0 | 15,463 | [
"DIRAC"
] | b1bdb6a1ba76aebda2068e811438ff0047fdf1d1ff7781a8639889500e1c46ea |
#!/usr/bin/env python
# Copyright (c) 2017-present, Facebook, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by a... | facebookresearch/Detectron | tools/convert_coco_model_to_cityscapes.py | Python | apache-2.0 | 4,289 | [
"Gaussian"
] | a3d1acd204768bdef499df8ba3bca15bfbaaa64d1f7abae68289e914efd7e7e2 |
__author__ = "setten"
import numpy
from pymatgen.util.convergence import determine_convergence
from pymatgen.util.testing import PymatgenTest
class ConvergenceTest(PymatgenTest):
def test_determine_convergence(self):
self.maxDiff = None
xs = [1, 2, 3, 4, 5, 6]
# a converging example:
... | vorwerkc/pymatgen | pymatgen/util/tests/test_convergence.py | Python | mit | 1,643 | [
"pymatgen"
] | 38a7dc0444cf1326a9b74b3d5f6ef6916bd0d54ae98b9584fd0df80e858cc372 |
import numpy as np
import time
import h5py
from mayavi import mlab
def drawVolumeWithoutReferenceCell(figure, cseg, reference, color=(0,0,1), opacity=0.3):
"""
Draw all cells in volume 'cseg' except the cell with label 'reference' into 'figure'.
'reference' is assumed to be a 1D np.array with size 1 ... | chaubold/hytra | empryonic/visCell.py | Python | mit | 8,300 | [
"Mayavi"
] | 6581eee80809184042871456eceeb2852b3fa5ccb7ad1edd2e29094bcb509bef |
#!/usr/bin/python
# -*- coding: utf-8 -*-
""" Dieses Script analysiert die Verteilung der Längen der Routen. Diese müssen
durch "Entfernungen.txt" gegeben sein.
"""
print("Beginne alle Routen zu lesen.")
f = open('/home/moose/mathe/Entfernungen.txt', 'r')
lines = f.readlines()
f.close()
print("Alle Routen w... | MartinThoma/LaTeX-examples | documents/mathe-handlungsreisender/Handlungsreisender-in-Deutschland-analyse.py | Python | mit | 1,696 | [
"MOOSE"
] | 849c4a2ce73cf576d2b4d3e8d58807bb2e7c2680b48f282f8f070523147d07f5 |
"""Core, non-language-specific features of DXR, implemented as a Plugin"""
from base64 import b64encode
from itertools import chain
from os.path import relpath, splitext, realpath, basename
import re
from flask import url_for
from funcy import identity
from jinja2 import Markup
from parsimonious import ParseError
fr... | jay-z007/dxr | dxr/plugins/core.py | Python | mit | 20,659 | [
"VisIt"
] | 68afc0542576300a33986e6c6e98fc11facfaceaa3dd90127278e0e4912dd934 |
#!/usr/bin/env python
import vtk
from vtk.test import Testing
from vtk.util.misc import vtkGetDataRoot
VTK_DATA_ROOT = vtkGetDataRoot()
# Image pipeline
reader = vtk.vtkImageReader()
reader.ReleaseDataFlagOff()
reader.SetDataByteOrderToLittleEndian()
reader.SetDataExtent(0,63,0,63,1,93)
reader.SetDataSpacing(3.2,3.2,1... | HopeFOAM/HopeFOAM | ThirdParty-0.1/ParaView-5.0.1/VTK/Common/Transforms/Testing/Python/TestThinPlateWarp3D.py | Python | gpl-3.0 | 1,768 | [
"VTK"
] | d753686b88de7fb361076e3794c7f19caabd302f5b75b3ee525466d521edf2b0 |
from brian import *
import time, cPickle
import numpy
# ###########################################
# Configuration
# ###########################################
numpy.random.seed(98765)
set_global_preferences(useweave=True)
set_global_preferences(usecodegen=True)
set_global_preferences(openmp=True)
# ###############... | vitay/ANNarchy | benchmarks/fini2015/Brian-COBA.py | Python | gpl-2.0 | 2,306 | [
"Brian",
"NEURON"
] | 8c4000258304a7e7533e7d94fb07159b96b0b36c87a55557ce602e630cd67dde |
##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | krafczyk/spack | lib/spack/spack/test/url_parse.py | Python | lgpl-2.1 | 20,835 | [
"BLAST",
"Gromacs",
"HOOMD-blue",
"Jmol",
"Octopus",
"VisIt"
] | 9768ac243bf9891793a9defce55e24977a92b5c1cfa1c6830710d493bfe3ee21 |
########################################################################
#
# (C) 2013, James Cammarata <jcammarata@ansible.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software ... | sudarkoff/ansible | lib/ansible/cli/galaxy.py | Python | gpl-3.0 | 20,292 | [
"Galaxy"
] | 9d0b555c94bf2b07c92cb94404de98025c4c52bf1370e525d300f1ebde901f28 |
import os
import fnmatch
try:
from setuptools import setup, find_packages
except ImportError:
from distutils.core import setup
def read_file(filename, *line):
'''(str, [int]) -> str
Reads filename file and returns contents at line. Returns
entire file if line not supplied and ignores any more the... | brianclements/wikidpad-utils | setup.py | Python | mit | 2,694 | [
"Brian"
] | 89f6be43c6d087eb5623b3acb9fdacbd4a056e1cee51e2fd919548d0d3e526f2 |
#!/usr/bin/env python
# table.py by Zeth
"""This module creates reStructuredText tables from a basic Python datatype.
One use is writing to a file, another is converting to HTML with Docutils;
a third use is handing on to Django's markup module.
You may be able to find other uses that I do not know about.
The input... | DanielKeep/gb | src/gb/tools/HashTest/table.py | Python | bsd-3-clause | 7,490 | [
"Brian"
] | f5f96af4c85f7aad06239fbc52cbaf79c472ee143eeac77305e29aedb1f51e08 |
from __future__ import print_function
from builtins import range
import sys
sys.path.insert(1,"../../../")
import h2o
from tests import pyunit_utils
from h2o.estimators.glm import H2OGeneralizedLinearEstimator
import random
def getLambdaModel():
print("Read data")
prostate = h2o.import_file(path=pyunit_utils... | nilbody/h2o-3 | h2o-py/tests/testdir_algos/glm/pyunit_NOFEATURE_getLambdaModel_mediumGLM.py | Python | apache-2.0 | 1,910 | [
"Gaussian"
] | 2c8cff42752fc6767e573360341e68bf357569140f6d33d716f82aeeb91d44b4 |
# -*- coding: utf-8 -*-
# Copyright 2010-2017, The University of Melbourne
# Copyright 2010-2017, Brian May
#
# This file is part of Karaage.
#
# Karaage is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either ... | Karaage-Cluster/karaage | karaage/conf/defaults.py | Python | gpl-3.0 | 18,446 | [
"Brian"
] | 0933728fd2fe6e61076a25a5705630c665f51bf934b744baa99483bf58497ed1 |
import numpy as np
import scipy.linalg as npalg
import scipy.stats as stats
import math
import pdb
def sigmoid(x):
return 1 / (1 + np.exp(-x))
def inverse_sigmoid(x):
return np.log(x / (1 - x))
def make_batches(N_data, batch_size):
return [slice(i, min(i + batch_size, N_data)) for i in range(0, N_data... | thangbui/geepee | geepee/tools.py | Python | mit | 6,973 | [
"Gaussian"
] | dfd46c27e0657f58ecdc0490be552893bb8113c0d120b7dc041757b67c555bd2 |
# (C) 2012, Michael DeHaan, <michael.dehaan@gmail.com>
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any la... | simobasso/ansible | lib/ansible/plugins/callback/osx_say.py | Python | gpl-3.0 | 3,002 | [
"exciting"
] | d346bba741e1dcf17bcd0e44b52e2dc47ab4231fafeb69deb18388906be2124c |
#
# Copyright (C) 2011 EADS France, Fabrice Desclaux <fabrice.desclaux@eads.net>
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any late... | amohanta/miasm | miasm2/expression/expression.py | Python | gpl-2.0 | 38,502 | [
"VisIt"
] | 2b02cda3300c2cf2d0945efd11502a5a8e007dece01c88e5611e465e8292864a |
'''
Key reference:
https://dcc.ligo.org/DocDB/0123/T1500606/002/NRInjectionInfrastructure.pdf
-- lionel.london@ligo.org 2016 --
'''
# Import useful things
from os import system, remove, makedirs, path
from os.path import dirname, basename, isdir, realpath
from numpy import arccos as acos
from numpy import array,one... | Cyberface/nrutils_dev | workflows/followup_nr2h5_workflow.py | Python | mit | 7,894 | [
"DIRAC"
] | 9fbbd0c331800f23cf496731ab25af4ff3e6fa0bc8d574babbaeba31cb1bd8a4 |
""" Simple JavaScript/ECMAScript object literal reader
Only supports object literals wrapped in `var x = ...;` statements, so you
might want to do read_js_object('var x = %s;' % literal) if it's in another format.
Requires the slimit <https://github.com/rspivak/slimit> library for parsing.
Basic con... | ajduncan/downspout | jsobj.py | Python | mit | 2,963 | [
"VisIt"
] | 599fc5ff368341744bed181937c373fe2d2ef20b619b75c1253fce582cb33c1f |
"""
handhRL
Hulks and Horrors: The Roguelike
Copyright 2014 by John S. Berry III
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later versio... | jarcane/handhRL | handhrl.py | Python | gpl-3.0 | 66,404 | [
"BLAST"
] | c71361bf32188f239130889e6d039859c757aa9d92eccb452572a56501a4d4b7 |
#!/usr/bin/env python3
# Author: Brian Fiedler 29 June 2016
# Converts the CRUTEM text data files into a convenient Python dictionary.
# Go to http://www.metoffice.gov.uk/hadobs/crutem4/data/download.html and you should see
# a link to http://www.metoffice.gov.uk/hadobs/crutem4/data/station_files/CRUTEM.4.4.0.0.station... | ActiveState/code | recipes/Python/580687_convert_hierarchy_datfiles_inconvenient/recipe-580687.py | Python | mit | 3,146 | [
"Brian"
] | 7b3ce04b069f66d7546089d4c8dd95cdd4257ca9c6727c10975e7e39b5e4668e |
# -*- coding: utf-8 -*-
"""
End-to-end tests for the LMS that utilize the
progress page.
"""
from contextlib import contextmanager
import ddt
import pytest
from ...fixtures.course import CourseFixture, XBlockFixtureDesc
from ...pages.common.logout import LogoutPage
from ...pages.lms.courseware import CoursewarePage
f... | philanthropy-u/edx-platform | common/test/acceptance/tests/lms/test_progress_page.py | Python | agpl-3.0 | 17,271 | [
"VisIt"
] | b679c4e42bcad997705befc0c4dfe202597af9dd24c83af9729e69aa509375bb |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
'''
luvoir_demo.py |github|
-----------------------
A demo simulation of Earth at 10 pc using a LUVOIR-like telescope setup.
.. role:: raw-html(raw)
:format: html
.. |github| replace:: :raw-html:`<a href = "https://github.com/jlustigy/coronagraph/blob/master/scr... | jlustigy/coronagraph | scripts/luvoir_demo.py | Python | mit | 5,564 | [
"Gaussian"
] | 78cd2e64a908164afce8ec56835eed3688f666041d5ce623e5dab07753690809 |
from __future__ import absolute_import
input_name = '../examples/multi_physics/biot_short_syntax.py'
output_name = 'test_biot_short_syntax.vtk'
from tests_basic import TestInput
class Test(TestInput):
pass
| rc/sfepy | tests/test_input_biot_short_syntax.py | Python | bsd-3-clause | 212 | [
"VTK"
] | 2457b691927bd6fa538e7a9cac1bfd84a00558079d00efc2c3eeb983e52943d6 |
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