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#!/usr/bin/env python
# -*- coding: utf-8 -*-
from __future__ import (division, print_function, absolute_import,
unicode_literals)
import os
import numpy as np
from ._fsps import driver
from .filters import FILTERS
__all__ = ["StellarPopulation"]
class StellarPopulation(object):
"""
... | nell-byler/python-fsps | fsps/fsps.py | Python | mit | 47,657 | [
"Gaussian"
] | ab35a7620558ca13fa7359026508e671bef054e7c25ad9f4db8400430e7dc768 |
# basic dependencies
import os
import sys
import subprocess
from glob import glob
import math
# main dependencies: numpy, nibabel
import numpy
import nibabel
# nighresjava and nighres functions
import nighresjava
from ..io import load_volume, save_volume
from ..utils import _output_dir_4saving, _fname_4saving, \
... | nighres/nighres | nighres/registration/embedded_antsreg.py | Python | apache-2.0 | 72,489 | [
"Brian"
] | 4de3102f49ba0e850ba286e68e7d49b13b5b17eb50bfbe6770532a298b825b6c |
__author__ = 'Ryba'
import glob
import itertools
import os
import sys
from collections import namedtuple
import matplotlib.pyplot as plt
import numpy as np
import scipy.ndimage.filters as scindifil
import scipy.ndimage.interpolation as scindiint
import scipy.ndimage.measurements as scindimea
impor... | mjirik/imtools | imtools/tools.py | Python | mit | 82,418 | [
"Gaussian"
] | b1684e3a1d6610379872fefacb5e037d8ff57b98fc9adc0bad5fc5e5fe8da7ef |
#!/usr/bin/python
# -*- coding: utf-8 -*-
################################################################################
#
# RMG - Reaction Mechanism Generator
#
# Copyright (c) 2002-2010 Prof. William H. Green (whgreen@mit.edu) and the
# RMG Team (rmg_dev@mit.edu)
#
# Permission is hereby granted, free of c... | enochd/RMG-Py | rmgpy/data/base.py | Python | mit | 53,019 | [
"RDKit"
] | f4d1cd3777cbbf06ae1b1efa2e3fbdd6c3129b6288343108cdf667a5fa46be37 |
""" Python test discovery, setup and run of test functions. """
import py
import inspect
import sys
import pytest
from _pytest.main import getfslineno
from _pytest.monkeypatch import monkeypatch
from py._code.code import TerminalRepr
import _pytest
cutdir = py.path.local(_pytest.__file__).dirpath()
callable = py.buil... | c0710204/mirrorsBistu | pypi/bandersnatch/lib/python2.7/site-packages/_pytest/python.py | Python | mit | 67,383 | [
"VisIt"
] | a38699719e0304922d131d8bbc805225dfd2dc617b457aab42573012cc7ba7e0 |
# -*- coding: utf-8 -*-
#
# RDKit documentation build configuration file, created by
# sphinx-quickstart on Sun Aug 7 18:51:45 2011.
#
# This file is execfile()d with the current directory set to its containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All c... | rvianello/rdkit | Docs/Book/conf.py | Python | bsd-3-clause | 7,191 | [
"RDKit"
] | 3e0e7a46631279ae67eaac49a748aee0bcdbd5022a2fa09eb66e42959d3dc9e0 |
import os
import pickle
import datetime
from rauth import OAuth2Service
def save_data(data):
pickle.dump(data, open('data.txt', 'w'))
def get_data():
data = {}
if os.path.isfile('data.txt'):
data = pickle.load(open('data.txt', 'r'))
if 'client_id' in data:
client_id = data['client... | SpeedyTechie/zookeeper-ai | zookeeper-ai.py | Python | gpl-3.0 | 2,919 | [
"VisIt"
] | 438fc6b10db952eb868fae37da083474104d6eade4fdb49b4c5024951b6b4d98 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# Autor: Flores Facundo
# Año: 2016
# Licencia: GNU/GPL V3 http://www.gnu.org/copyleft/gpl.html
# Estado: Produccion
from mayavi.core.api import PipelineBase
from mayavi.core.ui.api import SceneEditor
from mayavi.core.ui.mayavi_scene import MayaviScene
from mayavi.tools.... | FacundoGFlores/golsoftv2 | src/models/propagation_model.py | Python | gpl-3.0 | 1,937 | [
"Mayavi"
] | e9caefe86cd2462a99d3b41505031525ea301f6dd14aebe1a72dbc04fd7842f8 |
"""
Copyright (c) 2015 Red Hat, Inc
All rights reserved.
This software may be modified and distributed under the terms
of the BSD license. See the LICENSE file for details.
"""
import json
import os
import pytest
from osbs.constants import DEFAULT_NAMESPACE
from osbs.cli.capture import setup_json_capture
from tests.... | DBuildService/osbs-client | tests/cli/test_capture.py | Python | bsd-3-clause | 1,598 | [
"VisIt"
] | 4174a2e0f3c149b127b615b097baf7d1f8ef83076a1f5f181a12b0209ed1d2b4 |
from __future__ import print_function, absolute_import, division
import numpy as np
from scipy import fftpack
def VMD(signal, alpha, tau, K, DC, init, tol):
"""
Variational Mode Decomposition
Authors: Konstantin Dragomiretskiy and Dominique Zosso
zosso@math.ucla.edu --- http://www.math.ucla.edu/~zo... | nabobalis/pyvmd | VMD.py | Python | gpl-2.0 | 6,249 | [
"VMD"
] | 9825dcd82a5a8c048771ff39cf628f35a7fe6b4580e63093e1ab26ebd52a58a0 |
#__Author = 'Jongmin Yu' @ Ph.D Candidate @ GIST-MLV
#__Laboratory of Machine Learning and Computer Vision
#
#--Title.Gaussian probability density function for image file
#__data format = numpy
#
from math import sqrt
from parser import st2list
import matplotlib
__author__ = 'Schmitz'
from matplotlib import pyplot ... | jminyu/PatternRecognition_library | Gaussian_pdf.py | Python | gpl-3.0 | 1,890 | [
"Gaussian"
] | 4b0d3e53b32cce4b4b88f71edf86b50fbded89823ab58801802b08344e0df106 |
import ast
from itertools import cycle, chain, islice
from collections import namedtuple
import operator
def explain(code_string, important=None):
"""Parse a string containing a function-like call,
return a namedtuple containing the results
>>> explain('mymod.nestmod.func("arg1", "arg2",
... | ActiveState/code | recipes/Python/576671_Parse_call_functiPy26_Py27_/recipe-576671.py | Python | mit | 10,454 | [
"VisIt"
] | c7a913ac236138094e2a964258e692919a12bd4cbfade178140d690ec441c855 |
"""
API operations on Quota objects.
"""
import logging
from galaxy.web.base.controller import BaseAPIController, UsesQuotaMixin, url_for
from galaxy.web.base.controllers.admin import Admin
from galaxy import web, util
from galaxy.web.params import QuotaParamParser
from galaxy.actions.admin import AdminActions
from p... | mikel-egana-aranguren/SADI-Galaxy-Docker | galaxy-dist/lib/galaxy/webapps/galaxy/api/quotas.py | Python | gpl-3.0 | 5,327 | [
"Galaxy"
] | afb5664a01d14ef9d59af88c18d7613ce192d61b6e7d02d4f30cb569bfe567b3 |
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | cpcloud/arrow | python/pyarrow/util.py | Python | apache-2.0 | 5,001 | [
"VisIt"
] | b4c30f3b6004e87407e1927e0e8c0e0fa9eba9ce730a2770b59ec135b09cfdda |
# coding: utf-8
"""
Vericred API
Vericred's API allows you to search for Health Plans that a specific doctor
accepts.
## Getting Started
Visit our [Developer Portal](https://developers.vericred.com) to
create an account.
Once you have created an account, you can create one Application for
Production and an... | vericred/vericred-python | vericred_client/models/drug.py | Python | apache-2.0 | 15,271 | [
"VisIt"
] | 09ae630615508372b3f0de55f782d57b1620caf240d9a4f02197a8e5911f0aef |
###############################################################################
##
## Copyright (C) 2011-2014, NYU-Poly.
## Copyright (C) 2006-2011, University of Utah.
## All rights reserved.
## Contact: contact@vistrails.org
##
## This file is part of VisTrails.
##
## "Redistribution and use in source and binary for... | Nikea/VisTrails | vistrails/gui/shell.py | Python | bsd-3-clause | 6,767 | [
"VisIt"
] | 6e609d7d53d96934237bd3b62a628780de3604d635fd1bdb76bd7d7a5b13c29b |
import numpy as np
import struct
import re
import collections
import six
def iterable(arg):
return (isinstance(arg, collections.Iterable)
and not isinstance(arg, six.string_types))
class WPSRecordError(Exception):
pass
class WPSFormatError(Exception):
pass
class WPSRecord(dict):
def __init_... | openwfm/wrfxpy | src/wrf/wps_format.py | Python | mit | 10,331 | [
"Gaussian"
] | 15a9e8a312ca89a021e8f39182a5440ea95217b7c07dd81c623a1877bf436920 |
# -*- coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2006 Async Open Source <http://www.async.com.br>
## All rights reserved
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU Lesser General Public License as published by
## the Free Software F... | andrebellafronte/stoq | stoqlib/gui/slaves/imageslaveslave.py | Python | gpl-2.0 | 7,371 | [
"VisIt"
] | 12ac93772d1b71f83aac8bd7497b62bc6dafa1f2c313543cbe4cc6cf00238923 |
from pylab import *
import numpy as np
import matplotlib.pyplot as plt
import matplotlib.cm as cm
import matplotlib as mpl
mpl.rcParams['interactive'] = True
from matplotlib.colors import *
from scipy import interpolate as inp
from common import setVariable
def cmapDiscretize(cmap, N):
"""
Return a discrete colorm... | zjonke/EImotif | eim/plot.py | Python | mit | 7,250 | [
"NEURON"
] | 4eb01e76c1509bb8f9f9372d7ac34a19faec782f6f77d44d565d79663e8781b7 |
# Copyright (c) 2012, Cloudscaling
# All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... | Juniper/nova | nova/hacking/checks.py | Python | apache-2.0 | 30,074 | [
"VisIt"
] | 3e6014bfde9a03e05014e3b868c9623328180103bb523cd110eaf48bc1182bbf |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
A Flow is a container for Works, and works consist of tasks.
Flows are the final objects that can be dumped directly to a pickle file on disk
Flows are executed using abirun (abipy).
"""
from __future__ impo... | czhengsci/pymatgen | pymatgen/io/abinit/flows.py | Python | mit | 116,124 | [
"ABINIT",
"pymatgen"
] | 5bebe3e80c2be0d05601b68b8fdb05dd1d495cfc0df6aecbd36eaa3325c59cf9 |
# coding: utf-8
from __future__ import unicode_literals
"""
This module provides classes to perform fitting of molecule with arbitrary
atom orders.
This module is supposed to perform exact comparisons without the atom order
correspondence prerequisite, while molecule_structure_comparator is supposed
to do rough compa... | rousseab/pymatgen | pymatgen/analysis/molecule_matcher.py | Python | mit | 24,855 | [
"pymatgen"
] | 38c64be82dc01766bc4774c093a24465cc2dd6a963a9b4c46421519bc5edd544 |
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RHypergraph(RPackage):
"""A package providing hypergraph data structures
A package... | LLNL/spack | var/spack/repos/builtin/packages/r-hypergraph/package.py | Python | lgpl-2.1 | 1,091 | [
"Bioconductor"
] | 5d523a3d7b21d8eb9a16fc77543a5f0be039e233bac4bc0317ddf4e6cc370070 |
#Presence of Days in Social List
'''
@file : Category.py
@author (A) : Madhu Sai Ravada.
@project : Social List
function :
returns 1 if the tag contains any day of the week else it will return 0
This work is licensed under the
Creative Commons Attribution-NonCommercial-ShareAlike 4.0
International License. To vie... | SummerProject16/project | CMUTweetTagger/testFile4.py | Python | cc0-1.0 | 601 | [
"VisIt"
] | 0377fc18d2cb182b3e4d3269aed746f7f2fd31b5fe090ca45c9dcf93c4085c83 |
import sys
sys.path.append('./../bin')
from filter import filter
import numpy as np
import scipy.optimize as op
import matplotlib.pyplot as plt
from matplotlib import rc
import matplotlib as mpl
def filterff(path_file, filter_method="butter", a=1, b=1):
# load up some noisy data
logf = open(pa... | cbosoft/pi_rheo_proj | etc/archive/plot_filt_compar.py | Python | gpl-3.0 | 4,532 | [
"Gaussian"
] | af49075ce99a16277a83785fa24e73856c9cdd9d16e89f81c3675569f2e0bc29 |
#!/usr/bin/env python
##################################################
## DEPENDENCIES
import sys
import os
import os.path
try:
import builtins as builtin
except ImportError:
import __builtin__ as builtin
from os.path import getmtime, exists
import time
import types
from Cheetah.Version import MinCompatib... | MOA-2011/enigma2-plugin-extensions-openwebif | plugin/controllers/views/mobile/timeradded.py | Python | gpl-2.0 | 9,163 | [
"VisIt"
] | 15af6655750bd6c91fe2bad44c620caf83cecbb5ac15dfd9abe0b41ae0867082 |
# Copyright 2019 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | alexgorban/models | official/nlp/xlnet/xlnet_modeling.py | Python | apache-2.0 | 46,038 | [
"Gaussian"
] | 57d273eb08786e9129a0ea006f6c27ae0c5cd2337846c07b79d0fd27ad829215 |
from operator import itemgetter
import numpy
import re
try: import psyco; pysco.full()
except: pass
def dag_array(dagf):
recs = [] #collections.defaultdict(list)
fh = open(dagf, 'r')
qname_len = 0
sname_len = 0
qchr_len = 0
schr_len = 0
for line in fh:
if line[0] == '#': continue
... | LyonsLab/coge | bin/dagchainer/dag_tools.py | Python | bsd-2-clause | 5,046 | [
"BLAST"
] | 5d0786e084782299846b5ee82103b16e6207fe693cf549701c7bbc002f27cb0c |
import catmap
from catmap import ReactionModelWrapper
from catmap.model import ReactionModel
from catmap.functions import get_composition, add_dict_in_place
try:
from scipy.optimize import fmin_powell
except ImportError:
fmin_powell = None
import warnings
from mpmath import mpf
from math import exp, log
IdealG... | mhoffman/catmap | catmap/thermodynamics/enthalpy_entropy.py | Python | gpl-3.0 | 44,337 | [
"ASE"
] | af034ab7933111205edeacf0b0885c0bee1a187c45762684e8dab2e3376c1136 |
import bluesky.plans as bp
def detselect(detector_object, suffix="_stats1_total"):
"""Switch the active detector and set some internal state"""
print("This does not work anymore. Instead, do:")
print("dets = [YOUR_DETECTOR_HERE]")
def xpcs_count(detectors, *, md=None):
"""
Similar to `count`
... | NSLS-II-CHX/ipython_ophyd | startup/99-bluesky.py | Python | bsd-2-clause | 8,689 | [
"CRYSTAL"
] | c71f9cb12726c1c9bb422c04f969e0701e42c2541e23858e43d03a8b5fad8b04 |
"""
MUSE -- A Multi-algorithm-collaborative Universal Structure-prediction Environment
Copyright (C) 2010-2017 by Zhong-Li Liu
This program is free software; you can redistribute it and/or modify it under the
terms of the GNU General Public License as published by the Free Software Foundation
version 2 of t... | zhongliliu/muse | muse/Similarity/Expand_Cell.py | Python | gpl-2.0 | 4,901 | [
"VASP"
] | 609efa2461db133e6dc9b0c4079c3ae78aa515af5735e713b2d1ef7dd6981ddc |
import unittest as ut
import numpy as np
from .. import adjtools as adj
from ... import weights
from ... import io
from ... import examples
from ..util import lat2W
from ...common import RTOL, ATOL
from ... import io
from ...examples import get_path
try:
import pandas
import geopandas
PANDAS_MISSING = Fals... | lixun910/pysal | pysal/lib/weights/tests/test_adjlist.py | Python | bsd-3-clause | 3,719 | [
"COLUMBUS"
] | 7c03a9c283fa0e306dd5f8fe9df7192f746ce663599ee1a54e707886beb05ca8 |
"""
Contains basic data structures used throughout the rest of Q2MM.
"""
from __future__ import print_function
from __future__ import absolute_import
from __future__ import division
import copy
import logging
import numpy as np
import os
import re
import sys
import constants as co
import filetypes
logger = logging.g... | Q2MM/q2mm | q2mm/datatypes.py | Python | mit | 63,270 | [
"TINKER"
] | fdcae0b51662a7c07f8e9671a40dec406526edfb201cd7316df24dc0a9a133a5 |
'''
synbiochem (c) University of Manchester 2016
synbiochem is licensed under the MIT License.
To view a copy of this license, visit <http://opensource.org/licenses/MIT/>.
@author: neilswainston
'''
def get_well(idx, rows=8, columns=12, col_ord=True):
'''Map idx to well'''
if idx < 0 or idx >= rows * colu... | synbiochem/synbiochem-py | synbiochem/utils/plate_utils.py | Python | mit | 754 | [
"VisIt"
] | 2a08d72abd012aa4e7fcd833b9538b9d425dba99f6df60ea21395ca1fb3ec900 |
#########################################################
# CS6690-Pattern recognition
# Assignment - 1
# Author: Arulkumar S
#########################################################
import numpy as np
from numpy import size, reshape
import random
from numpy.core.numeric import arange
import pr_helper ... | InnovArul/codesmart | Assignments/Jul-Nov-2015/PatternRecognition/Assignment1/src/linear_regression.py | Python | gpl-2.0 | 16,288 | [
"MOOSE"
] | 7dc02cee2bd76b4f2b50541a0e46dcd6b810b2b3d047eca12053c744998a19a2 |
"""This is the main file you run to start a pinball machine."""
# mpf.py
# Mission Pinball Framework
# Written by Brian Madden & Gabe Knuth
# Released under the MIT License. (See license info at the end of this file.)
# Documentation and more info at http://missionpinball.com/mpf
import logging
from datetime import da... | qcapen/mpf | mpf.py | Python | mit | 5,475 | [
"Brian"
] | 8b88162a9e707020191c7b7a48f6583e72e1fe61b07d39d86493f5a5b71a2dde |
# Copyright 2001 by Tarjei Mikkelsen. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""BioPython Pathway module.
Bio.Pathway is a lightweight class library designed to suppor... | zjuchenyuan/BioWeb | Lib/Bio/Pathway/__init__.py | Python | mit | 10,973 | [
"Biopython"
] | f88afce360ba7f04d16e10156c9ad294aa56fc1e0e011c1eb001ff9821004339 |
# ============================================================================
#
# Copyright (C) 2007-2012 Conceptive Engineering bvba. All rights reserved.
# www.conceptive.be / project-camelot@conceptive.be
#
# This file is part of the Camelot Library.
#
# This file may be used under the terms of the GNU General... | jeroendierckx/Camelot | camelot/view/search.py | Python | gpl-2.0 | 6,015 | [
"VisIt"
] | 3329b3e0178ddcecb3aea4908074621db4c0d8ec7fb76585aa6c2f4176bfecc6 |
#!/usr/bin/env python
# (C) Copyright IBM Corporation 2004, 2005
# All Rights Reserved.
#
# Permission is hereby granted, free of charge, to any person obtaining a
# copy of this software and associated documentation files (the "Software"),
# to deal in the Software without restriction, including without limitation
# ... | zcbenz/cefode-chromium | third_party/mesa/MesaLib/src/mapi/glapi/gen/gl_apitemp.py | Python | bsd-3-clause | 9,279 | [
"Brian"
] | d49fa2bed755c0ef798b3429844f16d88acc8e9309bdc370953ec6f76033030c |
# MIT License
#
# Copyright (c) 2017, Stefan Webb. All Rights Reserved.
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to us... | stefanwebb/tensorflow-models | tensorflow_models/models/vae_expconcrete_made_made.py | Python | mit | 14,601 | [
"Gaussian"
] | f1b1f0ac201f51c6e5226bf9362dda8f371d2d5ed4d6854d33e56e2f646795cd |
import re
from django.urls import reverse
from test.test_helpers import check_response
"""
Tests for built-in Django auth views -- change password flow and forgot password flow.
"""
def test_change_password(user, client):
user.set_password('old_password')
user.save()
client.force_login(user)
# ... | harvard-lil/h2o | web/main/test/test_auth.py | Python | agpl-3.0 | 2,370 | [
"VisIt"
] | a306aa11e4e24c7c355b69af619448875427ff89e736b2d7ba5f607d6ee7110c |
# -*- coding: utf-8 -*-
#
# Copyright 2015, Foxugly. All rights reserved.
#
# This program is free software: you can redistribute it and/or modify it
# under the terms of the GNU Affero General Public License as published by
# the Free Software Foundation, either version 3 of the License, or (at
# your option) any late... | Foxugly/medagenda | settings.py | Python | gpl-3.0 | 5,721 | [
"VisIt"
] | 3db4b1201586b973ef984c8f5062deefb16d1cb62d9e34127cf371673304db8f |
# Copyright (c) 2013-2015 University Corporation for Atmospheric Research/Unidata.
# Distributed under the terms of the MIT License.
# SPDX-License-Identifier: MIT
"""
=======================
TDS Radar Query Service
=======================
Use Siphon to get NEXRAD Level 3 data from a TDS.
"""
from datetime import date... | dopplershift/siphon | examples/Radar_Server_Level_3.py | Python | mit | 3,365 | [
"NetCDF"
] | 8f0c17b8b3bfa9f9202ca4b930b99268d7584b0bd186eb563efaca49376dd750 |
# -*- coding: utf-8 -*-
from __future__ import absolute_import
from ..engine import Layer
from .. import backend as K
import numpy as np
from ..legacy import interfaces
class GaussianNoise(Layer):
"""Apply additive zero-centered Gaussian noise.
This is useful to mitigate overfitting
(you could see it as... | parag2489/keras_superpixel_pooling | layers/noise.py | Python | mit | 3,238 | [
"Gaussian"
] | 0314857dca985b59cfc7026c2cb28cad7c4ff7ff417e3826d8d9eb7aadb65beb |
#!/usr/bin/env python
import numpy
import netCDF4
import argparse
import math
def parseCommandLine():
"""
Parse the command line and invoke operations.
"""
parser = argparse.ArgumentParser(description=
'''
Compares the data in two netcdf files and reports level-by-level stats.
''',
epi... | adcroft/convert_WOA05 | python/compare2netcdf.py | Python | mit | 2,453 | [
"NetCDF"
] | f61211d94f67412ea7d4278458ee584209797b10fab439b21a082f43c7e149b6 |
# -*- coding:utf-8 -*-
from __future__ import unicode_literals
from django.contrib.sites.managers import CurrentSiteManager
from django.db import models
from django.utils.encoding import python_2_unicode_compatible
from django.utils.formats import date_format
from django.utils.translation import ugettext_lazy as _
f... | samuelmaudo/yepes | yepes/contrib/metrics/abstract_models.py | Python | bsd-3-clause | 9,505 | [
"VisIt"
] | 66f03d0976f6ca2946b71a068c9ef3c845cb3d73c7fe969f6710253fdffc5a9f |
from __future__ import division, print_function, absolute_import
import os
import sys
import contextlib
from os.path import join as pjoin
from hashlib import md5
from shutil import copyfileobj
import numpy as np
import nibabel as nib
import tarfile
import zipfile
from dipy.core.gradients import gradient_table
from ... | StongeEtienne/dipy | dipy/data/fetcher.py | Python | bsd-3-clause | 27,964 | [
"VisIt"
] | 85da26ccfe36501531cd5400e5635b456096b21b0638a46622d5d59ed7a4dd10 |
#!/usr/bin/python2.4
# Copyright (c) 2006-2008 The Chromium Authors. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
'''Tool to create a new, empty .grd file with all the basic sections.
'''
from grit.tool import interface
from grit import con... | Crystalnix/house-of-life-chromium | tools/grit/grit/tool/newgrd.py | Python | bsd-3-clause | 2,728 | [
"xTB"
] | 9dfa3670ea0643a63a1df2a98ea7089ba227ed0c6a0c92bc999a1217786ad6e7 |
# Copyright 2014 Roberto Brian Sarrionandia
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed t... | sarrionandia/tournatrack | profile.py | Python | apache-2.0 | 3,756 | [
"Brian"
] | 7d02cb112d88f5a405053383c9173550f95067fb87b5cc67746733fd626111d4 |
# Copyright (c) 2012 OpenStack Foundation
# All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless ... | redhat-openstack/nova | nova/tests/compute/test_resource_tracker.py | Python | apache-2.0 | 61,920 | [
"exciting"
] | dfd82f297cbf213fa175c58c66d2f4b95ced3204d7a13c81fc9648844b53919a |
# -*- coding: utf-8 -*-
# Semantic vectorizer based on Roget's Thesaurus.
# See: Mikhalkova, Elena, and Yuri Karyakin. "PunFields at SemEval-2017 Task 7: Employing Roget's Thesaurus in Automatic Pun Recognition and Interpretation."
# arXiv preprint arXiv:1707.05479 (2017). https://arxiv.org/pdf/1707.05479.pdf
"""## I... | evrog/PunFields | twit_to_vec.py | Python | gpl-3.0 | 6,648 | [
"COLUMBUS"
] | fb39b1b90f52864bc5299fde1a590538eb86830bffa9e81f799d43211c4f1523 |
# ----------------------------------------------------------------------------
# Copyright (c) 2013--, scikit-bio development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# --------------------------------------------... | anderspitman/scikit-bio | skbio/util/tests/test_decorator.py | Python | bsd-3-clause | 11,870 | [
"scikit-bio"
] | 89785f78aef3e22962d5f268bc6b3340b928c803874a09ac031b004bb0746988 |
"""
Test helper functions and base classes.
"""
import inspect
import json
import unittest
import functools
import operator
import pprint
import requests
import os
import urlparse
from contextlib import contextmanager
from datetime import datetime
from path import Path as path
from bok_choy.javascript import js_defined... | itsjeyd/edx-platform | common/test/acceptance/tests/helpers.py | Python | agpl-3.0 | 31,963 | [
"VisIt"
] | ff8cfbc3e33e17bc31ede6e83b4ee88fe38b67889dd692d14cc2bb2d1d65bb81 |
#print("pyci matrix elements vs GAMESS matrix elements")
#print("hii(2222200) = ",fullham[0,0] + mol.energy_nuc())
#print("GAMESS energy = -74.9420799538 ")
#print("hii(2222020) = ",fullham[22,22] + mol.energy_nuc())
#print("GAMESS energy = -73.9922866074 ")
badlist=[]
goodlist=[]
#ham-0: 15 ok (these are dets with no... | shivupa/pyci | methods/misc/h2o-ref/compare.py | Python | gpl-3.0 | 2,317 | [
"GAMESS"
] | b58b4a22e2232d41946d561e5db5551fa838a54434bf6195f23cce68c0a4922f |
"""Bayesian Gaussian Mixture Model."""
# Author: Wei Xue <xuewei4d@gmail.com>
# Thierry Guillemot <thierry.guillemot.work@gmail.com>
# License: BSD 3 clause
import math
import numpy as np
from scipy.special import digamma, gammaln
from .base import BaseMixture, _check_shape
from .gaussian_mixture import _chec... | PatrickOReilly/scikit-learn | sklearn/mixture/bayesian_mixture.py | Python | bsd-3-clause | 28,476 | [
"Gaussian"
] | 1535612ef515e79f740cea0cf8dce801479d32d788fdb48581391f1364426934 |
from __future__ import division
import numpy as np
import numpy.testing.decorators as dec
import nose.tools as nt
import statsmodels as sm
import matplotlib.pyplot as plt
from selection.algorithms.sqrt_lasso import (sqrt_lasso, choose_lambda,
estimate_sigma, data_carving, split_model)... | stefanv/selective-inference | selection/algorithms/tests/test_sqrt_lasso.py | Python | bsd-3-clause | 9,271 | [
"Gaussian"
] | b86a8f5de23a19988845b003ecdd698e072f3ef35d4e0c3e94c71e932d8c39c8 |
from PythonQt import QtCore, QtGui
from director import uipanel
from director import pointpicker
from director import applogic
from director import objectmodel as om
from director import vieweventfilter
from director import visualization as vis
from director import vtkAll as vtk
from director.debugVis import DebugData... | manuelli/director | src/python/director/measurementpanel.py | Python | bsd-3-clause | 6,051 | [
"VTK"
] | ba3703038b6166cb15779b73628e7ae02d9cc968bce59e5981b37acaaf2a5a2f |
'''
All this code is from SRJOGLEKAR246. I'm using it to learn. The original
can be found here: https://codesachin.wordpress.com/2015/11/28/self-organizing-maps-with-googles-tensorflow/
'''
import tensorflow as tf
import numpy as np
class SOM(object):
"""
2-D Self-Organizing Map with Gaussian Neighbourhoo... | gganssle/organize-yaself | tutorials/som_tf_tutorial.py | Python | mit | 9,345 | [
"Gaussian",
"NEURON"
] | 4c21e6b8cd8d4012d7249950a679cd496d8ed7b6be2b723015acf6f70e4314cc |
from typing import Any, Dict
EMOJI_NAME_MAPS: Dict[str, Dict[str, Any]] = {
# seems like best emoji for happy
'1f600': {'canonical_name': 'grinning', 'aliases': ['happy']},
'1f603': {'canonical_name': 'smiley', 'aliases': []},
# the google emoji for this is not great, so made People/9 'smile' and
#... | brainwane/zulip | tools/setup/emoji/emoji_names.py | Python | apache-2.0 | 95,373 | [
"CRYSTAL",
"Octopus"
] | 25772198de65eb8188da7e250e8fec18ca38b460528f3c1cd2c9a19b6adf95c7 |
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
import unittest
import requests
from pymatgen.core import SETTINGS
from pymatgen.ext.optimade import OptimadeRester
from pymatgen.util.testing import PymatgenTest
try:
website_is_up = requests.get("https://www.materials... | materialsproject/pymatgen | pymatgen/ext/tests/test_optimade.py | Python | mit | 3,388 | [
"pymatgen"
] | ea810447c7559fb8e777d4e5606f220b9182e84e8717c27b2fbbffdc09bfccfd |
"""
A simple VTK widget for PyQt v4, the Qt v4 bindings for Python.
See http://www.trolltech.com for Qt documentation, and
http://www.riverbankcomputing.co.uk for PyQt.
This class is based on the vtkGenericRenderWindowInteractor and is
therefore fairly powerful. It should also play nicely with the
vtk3DWidget code.
... | jmerkow/VTK | Wrapping/Python/vtk/qt4/QVTKRenderWindowInteractor.py | Python | bsd-3-clause | 14,224 | [
"CRYSTAL",
"VTK"
] | 77d54f5465b2c0a3e3ac13cd73ee40d3be1ad78073489455f939cc8e3f02b20f |
import sys
import time
import unittest
import wrappers
from coordinator.engine import Coordinator
from sprint import *
import environment
import stdlib
class testNetcdfSimulation(unittest.TestCase):
def setUp(self):
self.engine = Coordinator()
if sys.gettrace():
print 'Detected Deb... | Castronova/EMIT | tests/engine/test_netcdf.py | Python | gpl-2.0 | 2,771 | [
"NetCDF"
] | 2f103f7a4fcb34770c61f723133bdfb75985020799b6b29daf77269ee38dd4f1 |
#!/usr/bin/env python3
# -*- coding: utf-8; Mode: Python; indent-tabs-mode: nil; tab-width: 4 -*-
# vim: set fileencoding=utf-8 filetype=python syntax=python.doxygen fileformat=unix tabstop=4 expandtab :
# kate: encoding utf-8; bom off; syntax python; indent-mode python; eol unix; replace-tabs off; indent-width 4; tab-... | DevynCJohnson/Pybooster | accessory/machine_learning/Music/nn_funcs.py | Python | lgpl-3.0 | 17,260 | [
"Gaussian"
] | 592e78ddd585baf9667af54a30b647644a88ac9090999929010b9a0f7056bafa |
import sys
import subprocess,time
sys.path.append(sys.path[0] + "/..")
from src.MB import context,midi,music,players
context=context.Context()
melody_player=context.create_player(chan=1)
echo_player=context.create_player(chan=2)
melody_player.set_instrument('Piano')
accent=music.NoteOn(61,100)
weak=music.NoteOn(60... | pauljohnleonard/MusicBox | src/BROKEN/07_PlayerPhraseifierTest.py | Python | gpl-2.0 | 1,027 | [
"VisIt"
] | 368b4f172ef2a17cb39d1c6780cea5ae7dd0dd80a794e43eb6650114e63b052d |
from __future__ import unicode_literals
import base64
import datetime
import hashlib
import json
import netrc
import os
import re
import socket
import sys
import time
import math
from ..compat import (
compat_cookiejar,
compat_cookies,
compat_etree_fromstring,
compat_getpass,
compat_http_client,
... | adazey/Muzez | libs/youtube_dl/extractor/common.py | Python | gpl-3.0 | 102,558 | [
"VisIt"
] | f8c1a6d9cf7e5d601c9bc41fe29194f39e9e3654bc021238d1695a3418741ca1 |
#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | eljefe6a/incubator-beam | sdks/python/apache_beam/transforms/ptransform.py | Python | apache-2.0 | 26,321 | [
"VisIt"
] | 33d436c689e17723ddd48365ce2935eba107d6b76fb75f15cbd85a73713cd14b |
#!/usr/bin/env python
# Copyright (C) 2009-2015 the PISM Authors
# @package pism_python
# \author the PISM authors
# \brief Creates "from scratch" a boring dataset with the right format
# to use as a PISM bootstrapping file.
# \details Example use of Python for this purpose.
#
# Usage, including a minimal PISM call t... | talbrecht/pism_pik07 | util/pism_python.py | Python | gpl-3.0 | 2,820 | [
"NetCDF"
] | 70acc6fd03d6830df15c0bd142f196371d103385ef3b25ea57b236f4ad3c83e3 |
"""
DIRAC - Distributed Infrastructure with Remote Agent Control
The distributed data production and analysis system of LHCb and other VOs.
DIRAC is a software framework for distributed computing which
allows to integrate various computing resources in a single
system. At the same time it integrates al... | fstagni/DIRAC | __init__.py | Python | gpl-3.0 | 6,612 | [
"DIRAC"
] | 0917a122fe00ceafd28d8ce93df3c9bd80ffbea48da70c4f16f32bbf6a8e0e61 |
import ambgmin_ as GMIN
import pele.potentials.gminpotential as gminpot
from pele.optimize import fire
import numpy as np
from copy import copy
from pele.potentials.potential import potential as BasePotential
from simtk.openmm.app import *
from simtk.openmm import *
from simtk.unit import *
import simtk.openmm.ap... | kjs73/pele | playground/amber/compare_with_ambgmin/OpenmmAmbPot.py | Python | gpl-3.0 | 5,213 | [
"Amber",
"OpenMM"
] | c75eeef3bbc44d93e8f36a81cbb9f3de0283edb74c7bb51a64ea94bb9ddd2b75 |
import realdata
if __name__ == "__main__":
""" Convert the data from the 0.87 prototype to a script """
text = 'regions={}\n\n'
for regionName in sorted(realdata.regions):
props = realdata.regions[regionName]
label = props[0]
text += "regions['%s'] = network.createRegion(name = '%s'... | JaneliaSciComp/Neuroptikon | Source/realdata/convert.py | Python | bsd-3-clause | 1,546 | [
"NEURON"
] | 6d85c191ead26d5b099d4bab9284093691de1a2ae3db4f3a409b2161196dc434 |
#!/usr/bin/env python
from collections import namedtuple
from os.path import join, exists
from os import makedirs#, chdir,getcwd,fchmod
from glob import glob
import shutil
import numpy as np
#import pandas as pd
import re
#import scipy as sc
#from scipy.stats import norm
#from scipy.stats import expon
import scipy.inte... | zertan/Menace | menace/lib/Community.py | Python | gpl-2.0 | 13,338 | [
"Biopython"
] | 10b64f7d9acc331e1e896cc6a74bc1b6b74a619670896c739e11188d18d82da2 |
"""
@author: Martin Kuemmel
@organization: LMU / USM
@license: Gnu Public Licence
@contact: mkuemmel@usm.lmu.de
@version: $Revision: $
@date: $Date: $
@changeDate: $LastChangedDate: $
Initialize the test library.
"""
import os.path
import shutil
import unittest
# check tips version
import tips
if float(tips.... | nfourmanoit/TIPS | test/test_tips/testaxesim/testaxesimDisp.py | Python | gpl-3.0 | 10,081 | [
"Gaussian"
] | 27dbe3b9805d84170c362503f0daba907f4285f0e2865ed3fcc0f6a6fb4de2b3 |
import sys
import math, os, time, scipy.stats, numpy as np, pylab, Image, PIL.Image
import matplotlib.pyplot as plt, matplotlib.cm as cm
import numpy.random
import theano, theano.tensor as T
import anglepy as ap
import anglepy.models as apmodels
import anglepy.ndict as ndict
import anglepy.paramgraphics as paramgraphi... | dpkingma/nips14-ssl | run_flying.py | Python | mit | 4,244 | [
"Gaussian"
] | 9ba7c1be7d228d4d05b922413efd49991ea839408c263fc601f0b71d484ad9de |
import urllib2
import json
class GenRep(object):
"""Create an object to query a GenRep repository.
GenRep is the in-house repository for sequence assemblies for the
BBCF in Lausanne. This is an object that wraps its use in Python
in an idiomatic way.
Create a GenRep object with the base URL to t... | madhadron/rnaseq | rnaseq/genrep.py | Python | gpl-3.0 | 4,520 | [
"Bowtie"
] | a25e4251c472c85926ceddb2bd0be21425905882b67fd8c341c90790f0fd6062 |
# Copyright 2017 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | asimshankar/tensorflow | tensorflow/contrib/timeseries/python/timeseries/state_space_models/filtering_postprocessor.py | Python | apache-2.0 | 12,510 | [
"Gaussian"
] | a1476af797ce22322c853364537223c981db6518ed57252b6854d5c6b94e43e2 |
#! /usr/bin/python
import sys
import os
import re
import argparse
import subprocess as sp
from shutil import copyfile
import commandWriters as cw
#This script is meant to automate the set up of Turbomole
#calculations using a short list of input options. For
#information on specifying these options see the accomp... | magee256/TurbomoleScripts | SetUp/autoDefine/autoDefine.py | Python | mit | 11,310 | [
"TURBOMOLE"
] | d492ca4b2801959b117da83c48b5c92a797f6e051007efb0297e8fe8def75bfa |
import pytest
from cfme import test_requirements
@pytest.mark.manual
@test_requirements.update
@test_requirements.db_migration
@pytest.mark.meta(coverage=[1478986, 1561075, 1590846, 1578957])
@pytest.mark.tier(2)
def test_upgrade_dedicated_db_migration_local():
"""
Test that you can locally migrate a dedicat... | nachandr/cfme_tests | cfme/tests/test_db_migrate_manual.py | Python | gpl-2.0 | 18,398 | [
"VisIt"
] | 9397c8e2aa9419529676223845e14d88987d4ccbad3bbf0d9cbff99af50d6194 |
#!/usr/bin/env python
import os
import cPickle as pickle
import numpy as np
import matplotlib.pyplot as pl
import tempfile
import smtplib
try:
from email.mime.text import MIMEText
from email.mime.multipart import MIMEMultipart
except ImportError:
from email.MIMEMultipart import MIMEMultipart
from email... | qsnake/gpaw | gpaw/test/big/analysis.py | Python | gpl-3.0 | 9,107 | [
"GPAW"
] | 81cca84eeb7ff0b49e92655834fe75ed87fc4b8a64af95e882b771dc132edf8e |
'''
Shared library for the Belkin contest.
Author: Brian Chow
Email: brian.a.chow@gmail.com
Date: 2013-07-07
'''
from scipy import linspace, io
from pylab import *
from cmath import phase
from math import *
from matplotlib import pyplot
from bisect import bisect_left
import datetime
class DataFile:
'''
... | bachow/kaggle-belkin-contest | belkin.py | Python | mit | 12,543 | [
"Brian"
] | a8d76e4a10f9841fac45ec279599b823f5d0e1b4c20646e5052d94870697c18c |
from galaxy import exceptions
from galaxy.managers import histories
INPUT_STEP_TYPES = [ 'data_input', 'data_collection_input' ]
class WorkflowRunConfig( object ):
""" Wrapper around all the ways a workflow execution can be parameterized.
:param target_history: History to execute workflow in.
:type tar... | mikel-egana-aranguren/SADI-Galaxy-Docker | galaxy-dist/lib/galaxy/workflow/run_request.py | Python | gpl-3.0 | 10,558 | [
"Galaxy"
] | af263e53490140f421b6c3d7442f627d444fd196bc015c2f144bdfda34e0c832 |
from os import path as _p
import time
#----------------------------------------------------------
def merge(target, source):
"""
Copy target to a new dict, update using source and return result.
>>> sorted(merge({"a": 12, "x":"foo"}, {"x":1, "y":12}))
[("a", 12), ("x", 1), ("y", 12)]
"""
... | spiralx/mypy | mypy/xmldir.py | Python | mit | 3,213 | [
"VisIt"
] | 973c6252c31a18ed281c5cc7d1035b55fda28de9b17c88af21941842496a89aa |
#!/bin/env python3
# AUTHOR:
# Hakan Ozadam
# Moore Laboratory
# UMASS Medical School / HHMI
# RNA Therapeutics Institute
# Albert Sherman Center, ASC4-1009
# 368 Plantation Street
# Worcester, MA 01605
# USA
#
####################################################... | hakanozadam/bal | bal/umass_cluster/lsf/AlignBpJobGroup.py | Python | gpl-2.0 | 13,392 | [
"pysam"
] | b67ff0881e40af3bb2e2ea7b220d90b38e5deee52402c5040ef03b44bc9d3700 |
# -*- coding: UTF-8 -*-
# Copyright 2015-2020 Rumma & Ko Ltd
# License: BSD (see file COPYING for details)
from django.db import models
from lino.api import dd
class Person(dd.Model):
name = models.CharField(max_length=50)
def __str__(self):
return self.name
class Place(dd.Model):
name = m... | lino-framework/book | lino_book/projects/nomti/app/models.py | Python | bsd-2-clause | 2,482 | [
"VisIt"
] | 4bde643cc7f2f8d7e976b04d121de2c24e8b44149108e10ad960b4e63520db2f |
# Copyright 2021 The Pigweed Authors
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may not
# use this file except in compliance with the License. You may obtain a copy of
# the License at
#
# https://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in ... | google/pigweed | pw_console/py/log_store_test.py | Python | apache-2.0 | 4,655 | [
"Galaxy"
] | 1f6f5cfb33c07b940537baad7da3d892232f7d4f95247504667f50b07e8c8163 |
##############################################################################
# MDTraj: A Python Library for Loading, Saving, and Manipulating
# Molecular Dynamics Trajectories.
# Copyright 2012-2013 Stanford University and the Authors
#
# Authors: Gregory Bowman
# Contributors: Robert McGibbon
#
# MDTraj is f... | casawa/mdtraj | mdtraj/tests/test_io.py | Python | lgpl-2.1 | 5,261 | [
"MDTraj"
] | b9f0916cb99f35d746961eebcba3a348c299b416c30d8c6698c51d524be34a6a |
import random
"""
https://ftims.edu.p.lodz.pl/pluginfile.php/78898/mod_resource/content/2/zad_01_DELTA_en.pdf
It solves following 1st task which generally is:
Write a program which implements a single linear neuron trained with the delta rule
with the use of (a) single and (b) multiple training patterns.
"""
class... | marcin-olejniczak/ipd | neuron.py | Python | mit | 2,762 | [
"NEURON"
] | e10a7de344ddfab33530088dc098d6f2a928eec9480cea1a56c339b735be87e6 |
# -*- coding: utf-8 -*-
# vim: tabstop=4 shiftwidth=4 softtabstop=4
#
# LICENSE
#
# Copyright (c) 2010-2013, GEM Foundation, G. Weatherill, M. Pagani,
# D. Monelli.
#
# The Hazard Modeller's Toolkit is free software: you can redistribute
# it and/or modify it under the terms of the GNU Affero General Public
# License ... | luisera/hmtk | hmtk/seismicity/utils.py | Python | agpl-3.0 | 14,715 | [
"Gaussian"
] | 3737387d5f2abdb15529db874c59b5a5acc6cc316ddb3a6be8c2822e82d3a89d |
"""Merging functions for experiment lists and reflection tables."""
from __future__ import annotations
import logging
from io import StringIO
from jinja2 import ChoiceLoader, Environment, PackageLoader
from cctbx import uctbx
from mmtbx.scaling import data_statistics
from dials.algorithms.scaling.Ih_table import (... | dials/dials | algorithms/merging/merge.py | Python | bsd-3-clause | 15,694 | [
"CRYSTAL"
] | 4e2141a2cd1a07917496ab284ece896e5df23b0cdeea477754c8d3f5084f15d2 |
#
# Copyright 2001 - 2006 Ludek Smid [http://www.ospace.net/]
#
# This file is part of IGE - Outer Space.
#
# IGE - Outer Space is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the Lice... | OuterDeepSpace/OuterDeepSpace | libs/server/ige/ospace/GalaxyGenerator.py | Python | gpl-2.0 | 22,614 | [
"Galaxy"
] | 9aadcbc62ce43ff283b6c0bd6b726ce2c1f338bdbf53dcfba36ca91179107619 |
from nanopore.analyses.abstractAnalysis import AbstractAnalysis
from nanopore.analyses.utils import getFastqDictionary, samIterator
import os
import pysam
import xml.etree.cElementTree as ET
from jobTree.src.bioio import reverseComplement, prettyXml, system
from collections import Counter
import re
class ChannelMappa... | mitenjain/nanopore | nanopore/analyses/channelMappability.py | Python | mit | 1,887 | [
"pysam"
] | 0a083413d3dcd606fc4fe468ff67b1a56d9b16ec95589852273d49590e0166c9 |
# coding: utf-8
""" ConfigParserAdvanced,
developer by David Trillo Montero
write me at manejandodatos@gmail.com
Visit my website: http://www.manejandodatos.es
# Version 0.8.0 - 20150120
Mejora de escritura PEP 8
# Version 0.8.0 - 20140704
self.get() modificado para que se ajuste al tipo de dato
# Version 0.7.0 ... | Paco1994/sportbot | sportbot/sportbot/ConfigParserAdvanced.py | Python | gpl-3.0 | 5,260 | [
"VisIt"
] | 981b64a6ac737ac68f808bb6dcb3314d0de31f428dd98002448da73cc9e0c51d |
# -*- coding: utf-8 -*-
#
# Schematic Eye documentation build configuration file, created by
# sphinx-quickstart on Sat Nov 24 13:20:29 2012.
#
# This file is execfile()d with the current directory set to its containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#... | bps10/emmetrop | doc/source/conf.py | Python | mit | 8,456 | [
"Brian"
] | 6bc3771f4eebec2da67a6cd35efdc39707f6da1f804cc73f5e643cdc927e33e6 |
import datetime
import email
import functools
import hashlib
import json
import logging
import logging.handlers
import os
import re
import requests
import shutil
import smtplib
import socket
import subprocess
import sys
import tempfile
import time
import urllib
import random
import string
from flask import current_app... | jaboyles/CFTD_Senior_Project | CTFd/utils.py | Python | apache-2.0 | 21,094 | [
"VisIt"
] | 0195d0fb071b355d5366b6bd769176ce4c7cf9fe8624d63a8e00726d4271b1d8 |
# Author: Samuel Genheden samuel.genheden@gmail.com
"""
Program to replace the coordinates in a datafile with those of a PDB
The default output is the input data file with a "_repxyz" string appended
Example:
lmp_replace_dataxyz.py -f data.200popc_b2 -p 200popc_b2_pushed.pdb
"""
import os
import sys
import argpar... | SGenheden/Scripts | Lammps/lmp_replace_dataxyz.py | Python | mit | 1,259 | [
"LAMMPS"
] | 7a5a7efa71da3889ea0534c8a1489753d92f6b4b78572657b66779410964007a |
#!/usr/bin/env python
###########################################################################
# #
# This Python script may be used to simulate a monatomic LJ fluid in the #
# NVE or NVT ensemble. The starting configuration may be taken from ... | junghans/espressopp | bench/lennard_jones/espressopp/espressopp_lennard_jones.py | Python | gpl-3.0 | 5,213 | [
"LAMMPS"
] | 282297ddb9a3f2a450c833f568aef8cbce269aa61735e64fad93a545d42f7afa |
#!/usr/bin/env pvbatch
from paraview.simple import *
import pviz
import sys
oviz=pviz.viz(sys.argv) # instantiate viz object (and load data)
part=GetActiveSource() # select active part
ResetCamera() # auto-adapt camera to part extent
for var in part.PointData: # loop ... | ruizanthony/pviz | examples/simple/load2D_saveImage.py | Python | lgpl-3.0 | 509 | [
"ParaView"
] | 06b3a88d231effc683eb284436047402726ae2f559fe79c348f7ebf122ca2560 |
# Orca
# Copyright (C) 2014-2015 Synthicity, LLC
# Copyright (C) 2015 Autodesk
# See full license in LICENSE.
import os
import tempfile
import pandas as pd
import pytest
from pandas.util import testing as pdt
from .. import orca
from ..utils.testing import assert_frames_equal
def setup_function(func):
orca.cle... | SANDAG/orca | orca/tests/test_orca.py | Python | bsd-3-clause | 32,420 | [
"ORCA"
] | 31dba8684454692729b458ef2f9d5b9266e136b40fde41a5d84ffce6d8b40210 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module provides classes to perform fitting of structures.
"""
from __future__ import division, unicode_literals
import six
from six.moves import filter
from six.moves import zip
import numpy as np
i... | matk86/pymatgen | pymatgen/analysis/structure_matcher.py | Python | mit | 42,579 | [
"pymatgen"
] | 7f1d3a3a743aaceabecefa922f8abe40684f1de8d3965d37a2e8afbdf9c8ab74 |
from urllib2 import urlopen
import lxml.html
import requests
import json
import csv
# dataYears = ['2008', '2009', '2010', '2011', '2012', '2013', '2014', '2015']
# dataAgencies = ['USDA','DOC','DoD','ED','DOE','HHS','DHS','HUD','DOI','DOJ','U.S. DOL','State','DOT','Treasury','VA','ACUS','USAID','ABMC','NRPC','AFRH','... | sunlightlabs/foia-data | data/foia.gov/scrape-request-pending.py | Python | gpl-3.0 | 3,711 | [
"ADF"
] | 1a3bf5a573c5ac4f3ab36d48430e8bb03154be0720a9847c58a4aa00b7adf5ff |
# particlesim
# Copyright (C) 2017 Mark Niehues, Stefaan Hessmann, Jaap Pedersen,
# Simon Treu, Hanna Wulkow, Thomas Hadler
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software ... | maqnius/compscie-mc | particlesim/total_potential.py | Python | gpl-3.0 | 6,463 | [
"Gaussian"
] | 88d9572802021c814e1541b09344fdc0cbe3899f99b2b4a97733662a1c0499a6 |
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