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########################################################################
# $HeadURL$
# File : JobSanityAgent.py
# Author : Stuart Paterson
########################################################################
"""
The Job Sanity Agent accepts all jobs from the Job
receiver and screens them for the following pro... | sposs/DIRAC | WorkloadManagementSystem/Agent/JobSanityAgent.py | Python | gpl-3.0 | 10,350 | [
"DIRAC"
] | 2d3c95f6e04374ea0b8a8e9171b5fab97b256fc2b7b9bd07839f286f67ca9971 |
##
# Copyright (C) 2012 Jasper Snoek, Hugo Larochelle and Ryan P. Adams
#
# This code is written for research and educational purposes only to
# supplement the paper entitled
# "Practical Bayesian Optimization of Machine Learning Algorithms"
# by Snoek, Larochelle and Adams
# Advances in Neural Information Processing... | KEggensperger/SurrogateBenchmarks | Surrogates/RegressionModels/GaussianProcess_src/spearmint/gp.py | Python | gpl-3.0 | 10,747 | [
"Gaussian"
] | 42971232e36c8569dcdb2444a23d393eb5c20cbedc32ec722aea4aea1a4c8d84 |
#!/bin/env python
import sys, os, math, types, time, datetime
from urllib import urlopen
from urllib import urlretrieve
from urlparse import urlparse
#import Numeric as N
import numpy as N
import numpy.ma as MA
#import matplotlib.numerix.ma as MA
import matplotlib
matplotlib.use('Agg')
import matplotlib.pylab as M
fro... | dataplumber/nexus | climatology/clim/plotlib.py | Python | apache-2.0 | 33,780 | [
"NetCDF"
] | 2e33e66740240932edbad7f65cac8af679dbc8ed619f7b95d9c350cd42cb7cda |
'''
Created on Apr 13, 2015
@author: markus
'''
from copy import deepcopy
import random
class SpectrumSmearer(object):
'''
Simple smearing utility
'''
def __init__(self, spectrum):
'''
Constructor
'''
self.__inputspectrum = spectrum
self.__niterations = 1000
... | mfasDa/raadev | analysis/model/SpectrumSmearer.py | Python | gpl-3.0 | 2,646 | [
"Gaussian"
] | e459ca58712caf45d63843313663013dbc1ae001f9dd03e39c4239657db9359e |
# $Id$
#
# Copyright (c) 2003-2006 Rational Discovery LLC
#
# @@ All Rights Reserved @@
# This file is part of the RDKit.
# The contents are covered by the terms of the BSD license
# which is included in the file license.txt, found at the root
# of the RDKit source tree.
#
""" utility functionality for fingerpri... | jandom/rdkit | rdkit/Chem/Fingerprints/FingerprintMols.py | Python | bsd-3-clause | 17,861 | [
"RDKit"
] | 65f22c90e2ef24e6e951e3c64907a1d99e883600b5ba376d3718c8c6c8b182d8 |
import itertools as it
import numpy as np
import pytest
from pysisyphus.benchmarks import Benchmark
from pysisyphus.calculators import XTB
from pysisyphus.irc.IRCDummy import IRCDummy
from pysisyphus.run import run_endopt
from pysisyphus.testing import using
@pytest.fixture
def ts():
b = Benchmark("xtb_rx", cal... | eljost/pysisyphus | tests/test_endopt/test_endopt.py | Python | gpl-3.0 | 1,379 | [
"xTB"
] | 3febd95a4d324eec827e09cf72be2d0390fb8838db91254dcf91832710606686 |
#
# Copyright (C) 2008, Brian Tanner
#
#http://rl-glue-ext.googlecode.com/
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless requ... | okkhoy/mo-rlglue-python-codec | tests/test_speed_environment.py | Python | mit | 2,144 | [
"Brian"
] | 56369ba3095d2799f49fc63b30cf7d52dc41fb06637fea8998e7c04fb984c0d6 |
#!/usr/bin/env python
########################################################################
# $HeadURL$
########################################################################
"""
Get the list of all the user files.
"""
__RCSID__ = "$Id$"
from DIRAC.Core.Base import Script
days = 0
months = 0
years = 0
wildcard = ... | Andrew-McNab-UK/DIRAC | DataManagementSystem/scripts/dirac-dms-user-lfns.py | Python | gpl-3.0 | 5,368 | [
"DIRAC"
] | dbd1cb2d5b76965c8e555a8feed3a2f06b5efd12401be7a571683b8b0a6d21f2 |
""" SpaceTokenOccupancyPolicy
SpaceTokenOccupancyPolicy.__bases__:
DIRAC.ResourceStatusSystem.PolicySystem.PolicyBase.PolicyBase
"""
from DIRAC import S_OK
from DIRAC.ResourceStatusSystem.PolicySystem.PolicyBase import PolicyBase
__RCSID__ = '$Id$'
class Space... | vmendez/DIRAC | ResourceStatusSystem/Policy/SpaceTokenOccupancyPolicy.py | Python | gpl-3.0 | 2,170 | [
"DIRAC"
] | 69b121e392960d3b6a620eeb0f139816a80200a23ad9fca06ff9f0f4ac1e0c8b |
#!/usr/bin/env python
# Copyright 2015 The Kubernetes Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by appli... | w9n/cri-containerd | hack/boilerplate/boilerplate.py | Python | apache-2.0 | 6,450 | [
"VisIt"
] | 87f6e3f2062544588ae774ffe15a50f69bcd8e92e5b4ff1da517ce45608c941b |
##############################################################################
# adaptiveMD: A Python Framework to Run Adaptive Molecular Dynamics (MD)
# Simulations on HPC Resources
# Copyright 2017 FU Berlin and the Authors
#
# Authors: Jan-Hendrik Prinz
# Contributors:
#
# `adaptiveMD` is free software: ... | markovmodel/adaptivemd | adaptivemd/analysis/pyemma/__init__.py | Python | lgpl-2.1 | 1,126 | [
"MDTraj"
] | 112a00eeba69bfdad9194c34f9c5cfbc810cf637c1dc495df63c52e98ab4025b |
import sys
import requests
from pkgparse import settings
class BaseRegistry:
def __init__(self):
"""
This function is called whenever a new BaseRegistry class is created
and these variables also pass onto inheriting classes.
Inheriting classes need to create a definition for th... | marcus-crane/pkgparse | pkgparse/registry/base.py | Python | mit | 6,362 | [
"VisIt"
] | 79440beb660daa96c344b4fd43f63c166a7a399cc15ec5e67ff4b2df120401f3 |
# pylint: disable=missing-docstring
"""
Pattern calculator for Drakor. Woefully incomplete.
No UI; to use, load into console (IDLE works well), call the function
for the desired pattern, and then print the pattern tree. See also
pattern-ui.py.
Pattern naming rules: drop all non-alphanumeric characters; replace
space... | belisama/drakor-patterns | pattern.py | Python | mit | 29,917 | [
"Amber"
] | e640c5f77e6f0a095b78d1d23ac13dfdb1f0f106bd65975dd02d80acee5beb26 |
# -*- coding: utf-8 -*-
#
# File is part of the Prometheus Project
#
# Copyright (C) 2012-2015 Roger Pereira Boff <roger@gmail.com>
# All rights reserved
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Fo... | rogerboff/djsourceview | djsourceview/__init__.py | Python | mit | 983 | [
"VisIt"
] | 80c3e1dcba7260ba4df6ea1176fced0b448fce521166ef91e5aaba139d5dc7bd |
""" Dummy Service is a service for testing new dirac protocol
This file must be copied in FrameworkSystem/Service to run tests
"""
import six
from DIRAC import S_OK
from DIRAC.Core.DISET.RequestHandler import RequestHandler
# You need to copy ../DB/UserDB in DIRAC/FrameworkSystem/DB
from DIRAC.FrameworkSystem.DB.Us... | DIRACGrid/DIRAC | tests/Integration/TornadoServices/Services/UserDiracHandler.py | Python | gpl-3.0 | 1,828 | [
"DIRAC"
] | 9b400778611df44910c72b2e0406c935d0725ce4efb953cc22154bbb2bdfc897 |
# This file is a part of the "SuMPF" package
# Copyright (C) 2018-2021 Jonas Schulte-Coerne
#
# This program is free software: you can redistribute it and/or modify it under
# the terms of the GNU Lesser General Public License as published by the Free
# Software Foundation, either version 3 of the License, or (at your ... | JonasSC/SuMPF | tests/tests/_data/_signals/test_noise.py | Python | lgpl-3.0 | 17,376 | [
"Gaussian"
] | 5b6969ccc4c6cde54b7de62ed3ab339bb1137fe55f6551793cbf39325fc8bb6b |
"""
Filename: plot_water_budget.py
Author: Damien Irving, irving.damien@gmail.com
Description: Plot climatology and trends in precipitation and evaporation
Input: List of netCDF files to plot
Output: An image in either bitmap (e.g. .png) or vector (e.g. .svg, .eps) format
"""
# Import gener... | DamienIrving/ocean-analysis | visualisation/water_cycle/plot_water_budget.py | Python | mit | 7,344 | [
"NetCDF"
] | 0b493c3b3b44543a19aebd0ad068b7f39d1662161fad87b242fc20c279c9c572 |
'''
*** SHED SKIN Python-to-C++ Compiler ***
Copyright 2005-2013 Mark Dufour; License GNU GPL version 3 (See LICENSE)
extmod.py: extension module support
'''
from infer import called
from python import Class, def_class, Module
from typestr import ExtmodError, nodetypestr, singletype2
OVERLOAD_SINGLE = ['__neg__', '... | kirbyfan64/shedskin | shedskin/extmod.py | Python | gpl-3.0 | 21,649 | [
"VisIt"
] | ade536c84ce449a5354594a8082f10e7d386c5d3bd8d94d0e0856d678f598412 |
"""Dirac notation for states."""
from __future__ import print_function, division
from sympy import (cacheit, conjugate, Expr, Function, integrate, oo, sqrt,
Tuple)
from sympy.core.compatibility import u, range
from sympy.printing.pretty.stringpict import stringPict
from sympy.physics.quantum.qexpr ... | drufat/sympy | sympy/physics/quantum/state.py | Python | bsd-3-clause | 29,159 | [
"DIRAC"
] | 99f5ca539b0b8ee1a8573f8da57d60c5fa0bdf9327fa5f51578b173bfc34ec78 |
import ocl
import camvtk
import time
import datetime
import vtk
def drawTree(myscreen,t,color=camvtk.red,opacity=0.2, offset=(0,0,0)):
nodes = t.get_nodes()
nmax=len(nodes)
i=0
for n in nodes:
cen = n.point()
#print "cen=",cen.str()
scale = n.get_scale()
#print "col=",... | AlanZatarain/opencamlib | scripts/ocode/ocode_cylcutter_volume.py | Python | gpl-3.0 | 10,982 | [
"VTK"
] | e0e59399403a37c7fa3342bbf4f28f2abf8430cf62dfd0cd74aea2e09b1b5119 |
""" Module for EM calculations
"""
from __future__ import print_function, absolute_import, division, unicode_literals
import numpy as np
from astropy import units
from astropy import constants
def em_from_halpha(sb_obs, z, T=1e4*units.K):
"""
Estimate EM from the observed Halpha surface brightness
Foll... | FRBs/FRB | frb/em.py | Python | bsd-3-clause | 1,731 | [
"Galaxy"
] | 2450e8e5fe2855b32edbff03e21f4f509161d3d2d34c0efa4a9414a003d40734 |
import os
from os.path import join, getsize
for root, dirs, files in os.walk('python/Lib/email'):
print root, "consumes",
print sum([getsize(join(root, name)) for name in files]),
print "bytes in", len(files), "non-directory files"
if 'CVS' in dirs:
dirs.remove('CVS') # don't visit CVS director... | lichengshuang/createvhost | python/others/System/osos.py | Python | apache-2.0 | 324 | [
"VisIt"
] | 68891c434069c6accff6c73f079974228949ed9173b65ac40fc859a01558a1cc |
from typing import Optional
# Zulip Settings intended to be set by a system administrator.
#
# See http://zulip.readthedocs.io/en/latest/settings.html for
# detailed technical documentation on the Zulip settings system.
#
### MANDATORY SETTINGS
#
# These settings MUST be set in production. In a development environment... | vabs22/zulip | zproject/prod_settings_template.py | Python | apache-2.0 | 18,303 | [
"VisIt"
] | 9c5285ef7b09b2fe6f2d6a4b79fc5e10c0c03a66b6d8c284e82eadcd051c6161 |
# -*- coding: utf-8 -*-
# vim: autoindent shiftwidth=4 expandtab textwidth=120 tabstop=4 softtabstop=4
###############################################################################
# OpenLP - Open Source Lyrics Projection #
# ------------------------------------------------------... | marmyshev/transitions | openlp/plugins/songs/forms/editversedialog.py | Python | gpl-2.0 | 5,782 | [
"Brian"
] | d5a31712d6db462d8d552ca43f6a21089db83295ecf412594bea4ad928a40fd0 |
# coding: utf-8
"""
Vericred API
Vericred's API allows you to search for Health Plans that a specific doctor
accepts.
## Getting Started
Visit our [Developer Portal](https://developers.vericred.com) to
create an account.
Once you have created an account, you can create one Application for
Production and an... | vericred/vericred-python | vericred_client/models/service_area.py | Python | apache-2.0 | 13,185 | [
"VisIt"
] | 9c29b7481cdf98f90b5aa57a1e236964c7f8d92685c25219689825436342bda7 |
#!/usr/bin/env python
# -*- coding: utf8 -*-
# *****************************************************************
# ** PTS -- Python Toolkit for working with SKIRT **
# ** © Astronomical Observatory, Ghent University **
# *****************************************************************
##... | SKIRT/PTS | modeling/build/models/galaxy.py | Python | agpl-3.0 | 47,528 | [
"Galaxy"
] | f85e37d9cf0a4f381d85f0b812d3694a0491f6c84cd33c61f25b069aa4cb5fa2 |
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Transposome(PerlPackage):
"""A toolkit for annotation of transposable element families fro... | iulian787/spack | var/spack/repos/builtin/packages/transposome/package.py | Python | lgpl-2.1 | 626 | [
"BLAST"
] | cc9ba24193bdf5005a926b62a88409f1ca3d62fd0951d4d305bc4b1923a51132 |
# coding=utf-8
# Copyright 2016 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by app... | AlexEKoren/grumpy | compiler/block.py | Python | apache-2.0 | 13,851 | [
"VisIt"
] | df5bb12fbfa9dfb52ab47ae76351243a152cc9ee6c765b86bc87f8f917936892 |
# -*- coding: utf-8 -*-
"""
Created on Mon Apr 7 12:08:03 2014
Visualized data, imported from PAM for NEST
@author: martin
"""
import numpy as np
import matplotlib.pyplot as mp
import os
def save(path, ext='svg', close=False, verbose=True):
"""Save a figure from pyplot.
Parameters
----------
path... | MartinPyka/Pam-Utils | pamutils/nest_vis.py | Python | gpl-2.0 | 5,728 | [
"NEURON"
] | a842e06b77e0508ff93e780b8608c843568695cc216ca4d02d1c072cbe11ec81 |
#!/usr/bin/env python
"""
Used to setup ESP calculations.
Some MM partial charges can't be fit by the FF. Examples:
1. Charges that you are not optimizing. In other words, the atom may
be present in your reference structure, but you are not optimizing
a bond dipole that affects this atom.
2. MM3* makes all alip... | Q2MM/q2mm | q2mm/setup_esp.py | Python | mit | 7,907 | [
"Gaussian",
"Jaguar",
"MacroModel"
] | 5e66bcbc86ccb346b35b489b0847a68819c98c64bb18ef3b388bfd7155e461d6 |
from __future__ import print_function
from ase.data import atomic_masses, chemical_symbols
from ase.db.core import float_to_time_string, now, dict2constraint
import numpy as np
all_columns = ['id', 'age', 'user', 'formula', 'calculator',
'energy', 'fmax', 'pbc', 'volume',
#'keywords', ... | PHOTOX/fuase | ase/ase/db/table.py | Python | gpl-2.0 | 6,929 | [
"ASE"
] | 9c1d9516521bf62dac45f71d1bb29a93160840588cd1530ed1007340659277b6 |
# -*- coding: utf-8 -*-
#
# This file is part of Invenio.
# Copyright (C) 2013, 2015 CERN.
#
# Invenio is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public License as
# published by the Free Software Foundation; either version 2 of the
# License, or (at your option) any... | jirikuncar/invenio-deposit | invenio_deposit/form.py | Python | gpl-2.0 | 12,186 | [
"VisIt"
] | 1c8e249b0449adab663ad329c684fb2a31716334529aed73a656fb9b3ff6cb9b |
#
# @BEGIN LICENSE
#
# QCDB: quantum chemistry common driver and databases
#
# Copyright (c) 2011-2017 The QCDB Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of QCDB.
#
# QCDB is free software; you can redistribute it and/or modify
# it ... | cdsgroup/qcdb | qcdb/cfour.py | Python | lgpl-3.0 | 46,027 | [
"CFOUR",
"Psi4"
] | 4919157ad4aa582f29d3622265309d9f60023e6641f7c316475f3a25b425badd |
import os
import re
import uuid
import requests
import json
import logging
logging.basicConfig(level=logging.DEBUG)
logging.getLogger("urllib3").setLevel(logging.WARNING)
from django.core.management.base import BaseCommand
from account.models import Team
from django.conf import settings
from django.utils import timezo... | galaxy-ctf/milky-way | milkyway/management/commands/admin_pw.py | Python | agpl-3.0 | 1,350 | [
"Galaxy"
] | 9c730efb9e391c2eef5236e39937fcacf1d0d953d915762d5aa318e1f91e863b |
__all__ = ['fixed_quad','quadrature','romberg','trapz','simps','romb',
'cumtrapz','newton_cotes','composite']
from scipy.special.orthogonal import p_roots
from scipy.special import gammaln
from numpy import sum, ones, add, diff, isinf, isscalar, \
asarray, real, trapz, arange, empty
import numpy as np... | stefanv/scipy3 | scipy/integrate/quadrature.py | Python | bsd-3-clause | 23,524 | [
"Gaussian"
] | 03b6b9397f713bb8ba460737addca8aaaf449bf7ab41c81765ba2ac373470676 |
""":mod:`wand.image` --- Image objects
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Opens and manipulates images. Image objects can be used in :keyword:`with`
statement, and these resources will be automatically managed (even if any
error happened)::
with Image(filename='pikachu.png') as i:
print('width =', i.w... | bpc/wand | wand/image.py | Python | mit | 131,431 | [
"Gaussian"
] | ef8e288dbeac5e152cc14784e963578ce2d825c97a03c1308cbf8a614defa4d2 |
import numpy as np
import os.path, re, sys
import scipy.io as scio
from scipy.linalg import det
import cv2
import itertools
from js.data.rgbd.rgbdframe import *
import mayavi.mlab as mlab
import matplotlib.pyplot as plt
def plotMF(fig,R,col=None):
mfColor = []
mfColor.append((232/255.0,65/255.0,32/255.0)) # red
... | jstraub/rtmf | python/evaluateGravityOrientation.py | Python | mit | 5,661 | [
"Mayavi"
] | e41c9ab1fbef6389ee8ea8f9b04ef9f627520ab7dcf95b5615bc1688d4597bd2 |
from sympy.core import sympify, Lambda, Dummy, Integer, Rational, oo, Float, pi
from sympy.functions import sqrt, exp, erf
from sympy.printing import sstr
import random
class Sample(tuple):
"""
Sample([x1, x2, x3, ...]) represents a collection of samples.
Sample parameters like mean, variance and stddev c... | lidavidm/mathics-heroku | venv/lib/python2.7/site-packages/sympy/statistics/distributions.py | Python | gpl-3.0 | 14,656 | [
"Gaussian"
] | 082b00bcb99cf5447e723d6ed7d9f23cb8a12c38f3774e07ef16863da42feaba |
"""
=============================
Ledoit-Wolf vs OAS estimation
=============================
The usual covariance maximum likelihood estimate can be regularized
using shrinkage. Ledoit and Wolf proposed a close formula to compute
the asymptotically optimal shrinkage parameter (minimizing a MSE
criterion), yielding th... | RPGOne/Skynet | scikit-learn-0.18.1/examples/covariance/plot_lw_vs_oas.py | Python | bsd-3-clause | 2,951 | [
"Gaussian"
] | 2967b8f6674d5f91c45f5c74af0b2bc330eb8404754c127433ba53cd34dda95b |
# system configuration generated and used by the sysconfig module
build_time_vars = {'ABIFLAGS': '',
'AC_APPLE_UNIVERSAL_BUILD': 0,
'AIX_GENUINE_CPLUSPLUS': 0,
'AR': 'x86_64-linux-gnu-ar',
'ARFLAGS': 'rc',
'ASDLGEN': 'python3.4 ./Parser/asdl_c.py',
'ASDLGEN_FILES': './Parser/asdl.py ./Parser/asdl_c.py',
'AST_ASD... | michalliu/OpenWrt-Firefly-Libraries | staging_dir/target-mipsel_1004kc+dsp_uClibc-0.9.33.2/usr/lib/python3.4/_sysconfigdata.py | Python | gpl-2.0 | 26,507 | [
"Firefly"
] | 394a7cf512d999fd3e306df08ef06fa549698c7438d6533fc28b50017c7b29c2 |
# $Id$
#
# Copyright (C) 2001-2008 greg Landrum
#
# @@ All Rights Reserved @@
# This file is part of the RDKit.
# The contents are covered by the terms of the BSD license
# which is included in the file license.txt, found at the root
# of the RDKit source tree.
#
"""utility functions for clustering
"""
def Get... | rdkit/rdkit-orig | rdkit/ML/Cluster/ClusterUtils.py | Python | bsd-3-clause | 4,314 | [
"RDKit"
] | 9eaaf70068e39979e4e4eb0c4790a48e292a1d3c514a1cf02facc195bb070cc6 |
import unittest
from test import support
from itertools import *
import weakref
from decimal import Decimal
from fractions import Fraction
import sys
import operator
import random
import copy
import pickle
from functools import reduce
import sys
import struct
maxsize = support.MAX_Py_ssize_t
minsize = -maxsize-1
def l... | zhjunlang/kbengine | kbe/src/lib/python/Lib/test/test_itertools.py | Python | lgpl-3.0 | 86,335 | [
"GULP"
] | 0b4ccbcea80dc290524d05cd54fc0aee2866f5021f0d9897649ab6ff659e058b |
# Copyright 2017 Battelle Energy Alliance, LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed t... | idaholab/raven | doc/user_manual/generated/generateRomDoc.py | Python | apache-2.0 | 25,727 | [
"Gaussian"
] | 7e6110baf1bb1c1a958e8cc9f5d93306ee9140b9988a8c1c79f75699359405e6 |
""" This is the Proxy storage element client """
import os
from DIRAC import gLogger, S_OK, S_ERROR
from DIRAC.Resources.Storage.Utilities import checkArgumentFormat
from DIRAC.Resources.Storage.StorageBase import StorageBase
from DIRAC.Core.Tornado.Client.ClientSelector import TransferClientSelector as TransferClient... | DIRACGrid/DIRAC | src/DIRAC/Resources/Storage/ProxyStorage.py | Python | gpl-3.0 | 8,333 | [
"DIRAC"
] | 33aaeaae6cb3716208ada52d8a30f74bd282bf4b2b34080d13f2488991238014 |
# -*- coding: utf-8 -*-
from __future__ import print_function
from __future__ import unicode_literals
from moebot import MwApi
import json
import re
import datetime
from shutil import copyfile
import requests
import schedule
import time
import argparse
import sys
import traceback
import copy
import yaml
config = yaml.... | kcwikizh/kcwiki-scripts | deprecated/update_subtitle.py | Python | mit | 10,518 | [
"MOE"
] | ee5f88dc0b36cbda8ec0b733333f970a59045503c1365dc219c27fa16b27f819 |
"""
Provides analysis of site symmetries.
"""
import numpy as np
from pymatgen.core.operations import SymmOp
from pymatgen.symmetry.analyzer import SpacegroupAnalyzer as sga
def get_site_symmetries(struc, precision=0.1):
"""
Get all the point group operations centered on each atomic site
in the form [[p... | vorwerkc/pymatgen | pymatgen/symmetry/site_symmetries.py | Python | mit | 2,752 | [
"pymatgen"
] | 9c6d8724afbf7e4d9f51b8338ee3f7e1ccd2498d8a62bf85f8a4e67328e688fb |
# -*- coding: utf-8 -*-
#
#
# TheVirtualBrain-Scientific Package. This package holds all simulators, and
# analysers necessary to run brain-simulations. You can use it stand alone or
# in conjunction with TheVirtualBrain-Framework Package. See content of the
# documentation-folder for more details. See also http://ww... | stuart-knock/tvb-library | tvb/simulator/plot/mayavi_tools.py | Python | gpl-2.0 | 15,801 | [
"Mayavi"
] | 500bd6d4649edbb63d2d6971c301683e8619f5e71b7f04ca6b304d9e9268fe16 |
# pylint: disable-msg=W0142,C0103,E0201
# Copyright (C) 2003 CAMP
# Please see the accompanying LICENSE file for further information.
"""ASE-calculator interface."""
import numpy as np
from ase.units import Bohr, Hartree
from gpaw.xc import XC
from gpaw.paw import PAW
from gpaw.stress import stress
from gpaw.occup... | robwarm/gpaw-symm | gpaw/aseinterface.py | Python | gpl-3.0 | 26,918 | [
"ASE",
"GPAW",
"Gaussian"
] | 4fbc6cece4b9addd37fe9cc4152b90ae870311b09e4b2bbf2369155811919de5 |
#
# This source file is part of appleseed.
# Visit http://appleseedhq.net/ for additional information and resources.
#
# This software is released under the MIT license.
#
# Copyright (c) 2014-2017 The appleseedhq Organization
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this s... | jasperges/blenderseed | operators/__init__.py | Python | mit | 4,337 | [
"VisIt"
] | 4f9a1f135fcd90343508b14f6f9fc76cb94956542d2c0e18abdc1cdfd22fb3b8 |
from __future__ import division
from __future__ import print_function
"""Loader for DEM (topography) in netcdf format.
"""
from mpop import CONFIG_PATH
import os
from netCDF4 import Dataset
import numpy.ma as ma
from glob import glob
from mpop.projector import get_area_def
def read_dem():
"""Read digital elevatio... | meteoswiss-mdr/monti-pytroll | scripts/read_dem.py | Python | lgpl-3.0 | 697 | [
"NetCDF"
] | 221aae26c0232b4c2f653821188a8e631b7cdac8fc4ad183c62b84bde3ec1a18 |
import vtk
import math
import pyximport
import numpy as np
pyximport.install(setup_args={'include_dirs':[np.get_include()]}, inplace=True)
from _maximum_3d_distance import _maximum_3d_distance
import profiling_tools
"""
Group 2 : Shape and size based features
polydata : VOI as a vtkPolydata
V : Volume
A : Surface ... | wakita-ncch/Radiomics | src/Radiomics/group2_features.py | Python | mit | 2,117 | [
"VTK"
] | 1c482bee90a23104e10aa11b0e5a91c2eb551f27da238cd076b3b492d13ca74a |
#!/usr/bin/python
"""Test of Orca's presentation of Writer word navigation."""
from macaroon.playback import *
import utils
sequence = MacroSequence()
sequence.append(TypeAction("This is a test."))
sequence.append(KeyComboAction("Return"))
sequence.append(TypeAction("So is this."))
sequence.append(KeyComboAction("R... | GNOME/orca | test/keystrokes/oowriter/selection_word.py | Python | lgpl-2.1 | 9,981 | [
"ORCA"
] | a6a933cbb20172a4a5ddb2f7573e21e854c96bf8b829aa568115a8d91e43f263 |
r"""
Finite difference solution of the 2D wave equation for isotropic media.
Solutions are implemented as simulation classes taking advantage of Object
Orientation. They have Rich Display features of IPython Notebook and use
the HDF5 file format to store and persist the simulation objects.
**Sources**
* :class:`~fat... | eusoubrasileiro/fatiando_seismic | fatiando/seismic/wavefd.py | Python | bsd-3-clause | 68,755 | [
"BLAST",
"Gaussian"
] | 0a5616ec6cb82ea75e5a1acabde866fd87bbf901ac335195617c45493ad393b9 |
# Copyright (C) 2015 Hydriz Scholz
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in ... | Hydriz/DBReports | dbr.py | Python | gpl-3.0 | 2,353 | [
"VisIt"
] | 08ba12829e61504a05dc6b7439b1f1f1ce1bb7f0a2b4c69ef899fdc764fac76e |
# -*- coding: utf-8 -*-
"""
Created on Mon Mar 06 14:25:40 2017
@author: Zhenqin Wu
"""
import os
import time
import csv
import numpy as np
import deepchem
import pickle
from deepchem.molnet.run_benchmark_models import benchmark_classification, benchmark_regression
from deepchem.molnet.check_availability import CheckF... | deepchem/deepchem | deepchem/molnet/run_benchmark.py | Python | mit | 12,400 | [
"Gaussian"
] | ca8e01a362eb541d7123f7ed424fc845de52c8b450beee12a40597b38d6dcf33 |
# MIDI Hex Keys as discribed in the MagPi magizine number 109 by Mike Cook
# Save in the Pico USB file window as code.py to run automatically
import time
import random
import board
import digitalio
import os
import busio
import displayio
import terminalio
import adafruit_displayio_ssd1306
from adafruit_display_text imp... | Grumpy-Mike/Mikes-Pi-Bakery | Hex-Keys Part 2/Final software/midi_hex_keys.py | Python | gpl-2.0 | 21,152 | [
"CRYSTAL"
] | 4831d530569ceaf8010253f87a7c6376e38b9f3cf8548727bacf2bd0836e1c82 |
#
# Copyright 2016 The BigDL Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in ... | intel-analytics/BigDL | python/chronos/src/bigdl/chronos/autots/model/base_automodel.py | Python | apache-2.0 | 15,786 | [
"ORCA"
] | 5c6c844bfc425bcdd3b2d629e92aee6d71508bd15089a624d6a70bc1c295b2fb |
#
# Project: MXCuBE
# https://github.com/mxcube
#
# This file is part of MXCuBE software.
#
# MXCuBE is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your... | IvarsKarpics/mxcube | gui/bricks/SampleDetailsBrick.py | Python | lgpl-3.0 | 5,075 | [
"CRYSTAL"
] | b16a61afcaa4fda24bdbff3353e15bb8068d8394c8ccca6a47560ea050c3bbd4 |
#!/usr/bin/env python
"""
Caffe network visualization: draw the NetParameter protobuffer.
NOTE: this requires pydot>=1.0.2, which is not included in requirements.txt
since it requires graphviz and other prerequisites outside the scope of the
Caffe.
"""
from caffe.proto import caffe_pb2
from google.protobuf import tex... | pcoving/caffe | python/caffe/drawnet.py | Python | bsd-2-clause | 3,116 | [
"NEURON"
] | 4de27bd921d9075a8af5f1375bcf98e7a7c1864b47a087c263b96795133eeeec |
""" TaskManager contains WorkflowsTasks and RequestTasks modules, for managing jobs and requests tasks
"""
__RCSID__ = "$Id$"
COMPONENT_NAME = 'TaskManager'
import time
import StringIO
from DIRAC import S_OK, S_ERROR, gLogger
from DIRAC.Core.Security.ProxyInfo ... | vmendez/DIRAC | TransformationSystem/Client/TaskManager.py | Python | gpl-3.0 | 24,063 | [
"DIRAC"
] | eff9ab14766854381e46257c92d9e10cd5dd01ed2e29ffdb4d9944c554eb01d6 |
#!/usr/bin/env python
from setuptools import setup, find_packages
import kademlia
setup(
name="kademlia",
version=kademlia.__version__,
description="Kademlia is a distributed hash table for decentralized peer-to-peer computer networks.",
long_description=open("README.md", encoding='utf-8').read(),
... | bmuller/kademlia | setup.py | Python | mit | 1,095 | [
"Brian"
] | 37c9370ba21bad2d55cc458b027f1591416cf5ffcb7ef2c97089b62c264c1155 |
import logging
from nestedbasinsampling import (
NBS_manager, LOG_CONFIG, SamplingError, combineAllRuns, Replica)
from gaussian_system import get_system, system_kws, Ecut
import numpy as np
import matplotlib.pyplot as plt
from tqdm import tqdm
plt.ion()
if __name__ == '__main__':
logging.basi... | matthewghgriffiths/nestedbasinsampling | examples/Gaussian/read_db.py | Python | gpl-3.0 | 786 | [
"Gaussian"
] | 68e8101231a854260eabed1ad4350afe5e10508d341cc053f732e38457f71515 |
# Copyright (c) 2014-2021, Simon Percivall and Spack Project Developers.
#
# SPDX-License-Identifier: Python-2.0
# coding: utf-8
from __future__ import absolute_import
from six.moves import cStringIO
from .unparser import Unparser
__version__ = '1.6.3'
def unparse(tree, py_ver_consistent=False):
v = cStringIO... | LLNL/spack | lib/spack/spack/util/unparse/__init__.py | Python | lgpl-2.1 | 451 | [
"VisIt"
] | 140c1252a2e3061a4d36a2a0404fc2778580d18bbae4ff758b00314ed6c32747 |
"""
=====================================
Inference for Linear-Gaussian Systems
=====================================
This module implements the Kalman Filter, Kalman Smoother, and
EM Algorithm for Linear-Gaussian state space models
Copied from https://github.com/pykalman/pykalman since installing with conda didn't w... | bramjochems/BJFinanceLib | BJFinanceLib/math/kalman/standard.py | Python | gpl-3.0 | 60,968 | [
"Gaussian"
] | 1893b78df61b272b49f73de0c7217e02a1c81698f8dee99bdd97af4b93c6ca80 |
import cv2
import numpy as np
from dnfpy.core.funcMap2D import FuncMap2D
from dnfpy.model.inputMap import InputMap
from dnfpy.model.fieldMap import FieldMap
from dnfpy.model.activationMap import ActivationMap
from dnfpy.model.lateralWeightsMap import LateralWeightsMap
from dnfpy.model.webcamMap import WebcamMap
from dn... | bchappet/dnfpy | src/dnfpyUtils/models/modelWMCam.py | Python | gpl-2.0 | 4,856 | [
"Gaussian"
] | b703b9df49f65b7f9949b5bf5c015245999dad512b2bc9b7285fc11a61ee6109 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# Cinder -- C++ Single Spiking Neuron Simulator
# Copyright (C) 2015, 2016 Andreas Stoeckel, Christoph Jenzen
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free So... | hbp-sanncs/cinder | scripts/plot_izhikevich_cond_alpha.py | Python | gpl-3.0 | 1,753 | [
"NEURON"
] | 5641b5618acabcb4ec605555d26fc94193d6864377fc78470a5a6d9a4e98cb79 |
#
# Copyright 2020 Johannes Hoermann (U. Freiburg)
#
# matscipy - Materials science with Python at the atomic-scale
# https://github.com/libAtoms/matscipy
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software F... | libAtoms/matscipy | examples/electrochemistry/samples_stericify.py | Python | lgpl-2.1 | 16,964 | [
"ASE",
"LAMMPS",
"Matscipy",
"OVITO"
] | cdc63dfdd96c6147dd77d8f1c940e396f11e17467a69767a6b780ea4c27b3232 |
#!/usr/bin/env python
from __future__ import print_function
import vtk
class MyInteractorStyle(vtk.vtkInteractorStyleTrackballCamera):
def __init__(self, parent=None):
self.AddObserver("MiddleButtonPressEvent", self.middle_button_press_event)
self.AddObserver("MiddleButtonReleaseEvent", self.mid... | lorensen/VTKExamples | src/Python/Interaction/MouseEvents.py | Python | apache-2.0 | 1,446 | [
"VTK"
] | 82a2f3f3e1aeef1bf5d92db8dbf1c6affa5fcace59436dd9a99fca4a35509a71 |
# encoding: utf-8
import datetime
from south.db import db
from south.v2 import SchemaMigration
from django.db import models
class Migration(SchemaMigration):
def forwards(self, orm):
# Adding model 'NeuronEphysLink'
db.create_table('neuroelectro_neuronephyslink', (
... | neuroelectro/neuroelectro_org | neuroelectro/south_migrations/0014_auto__add_neuronephyslink__add_ephyspropsyn__add_ephysprop__add_datata.py | Python | gpl-2.0 | 12,599 | [
"NEURON"
] | abf27e6e274de2c7076918eb3e46074a06efc765db5e9cf361767e79bdbe9060 |
from ethereum import utils
def mk_forwarder(address):
code = b'\x36\x60\x00\x60\x00\x37' # CALLDATACOPY 0 0 (CALLDATASIZE)
code += b'\x61\x10\x00\x60\x00\x36\x60\x00' # 4096 0 CALLDATASIZE 0
code += b'\x73' + utils.normalize_address(address) + b'\x5a' # address gas
code += b'\xf4' # delegatecall
co... | NedYork/viper | scripts/forwarder.py | Python | mit | 1,435 | [
"MOOSE"
] | 610a6f9b86f89d73eb83bda403a56368952adef0d3d4d9a1f03cbb6f49808a74 |
""" Test class for Job Cleaning Agent
"""
# imports
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import pytest
from mock import MagicMock
# DIRAC Components
from DIRAC.WorkloadManagementSystem.Agent.JobCleaningAgent import JobCleaningAgent
from DIRAC imp... | yujikato/DIRAC | src/DIRAC/WorkloadManagementSystem/Agent/test/Test_Agent_JobCleaningAgent.py | Python | gpl-3.0 | 6,717 | [
"DIRAC"
] | ebdbba0d2ababfa3f9b355975de71f284112b3fa5bdc200952461a36cec15338 |
#
# Copyright (C) 2013-2019 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later... | fweik/espresso | testsuite/python/brownian_dynamics_stats.py | Python | gpl-3.0 | 4,992 | [
"ESPResSo"
] | c9da2672e9fa70beef7d9dd77cb9206976492f3f668019c7e1483af7ab48a610 |
import ANNarchy
import ANNarchy.core.Global as Global
from ANNarchy.core.Neuron import Neuron
from ANNarchy.core.Synapse import Synapse
from ANNarchy.core.PopulationView import PopulationView
import ANNarchy.parser.report.LatexParser as LatexParser
from ANNarchy.parser.AnalyseNeuron import analyse_neuron
from ANNarchy.... | vitay/ANNarchy | ANNarchy/parser/report/MarkdownReport.py | Python | gpl-2.0 | 15,846 | [
"NEURON"
] | 969942c152c8144214815d714bd50a6e7e7f299af4aa56161abffa0df9a270fc |
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
# @Author: Jean-Luc Auge
# @Date: 2018-02-02 14:06:55
from numpy import zeros, array
from gnpy.core.elements import Transceiver, Edfa
from gnpy.core.utils import automatic_fmax, lin2db, db2lin, merge_amplifier_restrictions
from gnpy.core.info import create_input_spectra... | Telecominfraproject/gnpy | tests/test_amplifier.py | Python | bsd-3-clause | 7,912 | [
"ASE"
] | 1b075e58b923e3bf187c425d35372534d6381b5a34fb23f9d9bb8a79431201cf |
######################################################################
# Copyright (C) 2011-2014 Jaakko Luttinen
#
# This file is licensed under Version 3.0 of the GNU General Public
# License. See LICENSE for a text of the license.
######################################################################
###############... | nipunbatra/bayespy | bayespy/inference/vmp/nodes/dot.py | Python | gpl-3.0 | 18,959 | [
"Gaussian"
] | 40d0c0d10c89b05134223ccff4c4311025dc3cf95d73d32b4222616635c277b9 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
The initial version of this module was based on a similar implementation
present in FireWorks (https://pypi.python.org/pypi/FireWorks).
Work done by D. Waroquiers, A. Jain, and M. Kocher.
The main differenc... | dongsenfo/pymatgen | pymatgen/io/abinit/qadapters.py | Python | mit | 87,078 | [
"ABINIT",
"pymatgen"
] | 6d4ed0bc91c912c44795c9c0431d85868725542e1c02c7f516a2eeb5b4f400ad |
#!/usr/bin/env python
# coding: utf-8
"""
Web Interface
=============
Goals:
* show web interface
----
First, start scheduler in the background.
$ luigid --background
Simple command line integration.
$ python x01.py MyTask
Screenies:
* http://i.imgur.com/OTgMTZP.png
"""
import time
import luigi
c... | miku/siskin | docs/btag-2017/byoi/code/x01.py | Python | gpl-3.0 | 754 | [
"VisIt"
] | a5634325f24080e3c9ce142b6a12b7ec67e67fe01eba5647756cb3f56d8ef049 |
# -*- coding: utf-8 -*-
"""Payload system for IPython.
Authors:
* Fernando Perez
* Brian Granger
"""
#-----------------------------------------------------------------------------
# Copyright (C) 2008-2011 The IPython Development Team
#
# Distributed under the terms of the BSD License. The full license is in... | wolfram74/numerical_methods_iserles_notes | venv/lib/python2.7/site-packages/IPython/core/payload.py | Python | mit | 1,770 | [
"Brian"
] | 09b3e3f151429d878ef81c79d4f7580ac500225fbe07aece5eeade9acb2db7e5 |
# The command file for every external command not specifically for running
# the bot. Even more relevant commands like broadcast options and whitelists
# are treated as such.
#
# Every command in here should follow the basic structure of:
# elif cmd == 'commandHere':
# doYourThings(lots, of, variables)
# return... | awesomarcus/PokemonShowdownBot-1 | commands.py | Python | mit | 23,893 | [
"BLAST"
] | 8f91387ad8849e7fefed8194dd951e5f1aac7eeaf84045a84908964700d84a31 |
""" What's this...?
"""
__RCSID__ = "$Id"
import datetime
from DIRAC import gLogger, S_OK, S_ERROR
from DIRAC.WorkloadManagementSystem.Client.JobState.JobManifest import JobManifest
from DIRAC.Core.DISET.RPCClient import RPCClient
from DIRAC.WorkloadManagementSystem.Service.JobPolicy import RIGHT_GET_INFO, RIGHT_RESC... | hgiemza/DIRAC | WorkloadManagementSystem/Client/JobState/JobState.py | Python | gpl-3.0 | 19,151 | [
"DIRAC"
] | b95333a12e4f8fb23b8b0499bd62c8298656ba6db14b8c03bf215ac3dd2104b1 |
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by appl... | gkc1000/pyscf | examples/local_orb/ulocal.py | Python | apache-2.0 | 4,746 | [
"PySCF"
] | ca837b223cac72866e1df6082b866a5f8efb463f6fe0401ec2d8c02ae85d97b7 |
########################################################################
#
# (C) 2015, Chris Houseknecht <chouse@ansible.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Fo... | grimmjow8/ansible | lib/ansible/galaxy/login.py | Python | gpl-3.0 | 4,488 | [
"Galaxy"
] | 9bf05bef8ed51cae902cc72f47497e5f3b0f85ac23514aebc122f181ad645813 |
# http://bugs.python.org/issue15881#msg170215
from setuptools import find_packages, setup
with open('requirements.txt') as f:
requires = f.read().splitlines()
setup(
name="chado",
version='2.3.3',
description="Chado library",
author="Anthony Bretaudeau",
author_email="anthony.bretaudeau@inrae.... | abretaud/python-chado | setup.py | Python | mit | 1,095 | [
"Galaxy"
] | 678d1e26aefb33d8352a25e14c9bb0731820baa75d9af56d686d3591faee2614 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
# (c) 2014, Brian Coca <brian.coca+dev@gmail.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the... | caphrim007/ansible-modules-extras | system/getent.py | Python | gpl-3.0 | 4,192 | [
"Brian"
] | 593ce56e3abe5f837bdc1f2b8ed9bc6779a150eb19fcac15aa1bad9e57eadf7b |
import ddapp.objectmodel as om
from ddapp.asynctaskqueue import AsyncTaskQueue
class GraspSearchPlanner(object):
def __init__(self, ikPlanner, robotModel, jointController, sensorJointController, planPlaybackFunction, showPoseFunction, playbackRobotModel):
self.ikPlanner = ikServer
self.robotMode... | gizatt/director | src/python/ddapp/debrisdemo.py | Python | bsd-3-clause | 32,370 | [
"VTK"
] | eeeef198f087222dbbb3e1ad80f30e1dcd4b9600d7ae67a9abb0a80da321abc0 |
from __future__ import annotations
import math
from dials.algorithms.profile_model.modeller import EmpiricalProfileModeller
def evaluate_gaussian(x, a, x0, sx):
assert len(x) == len(x0)
assert len(x) == len(sx)
g = 0.0
for xi, x0i, sxi in zip(x, x0, sx):
g += (xi - x0i) ** 2 / (2.0 * sxi**2... | dials/dials | tests/algorithms/integration/profile/test_empirical_modeller.py | Python | bsd-3-clause | 5,054 | [
"Gaussian"
] | 01e28f9e293d07b2f3fbf33cc98a4201498ed36607b31c89abd27913711f68be |
#!/usr/bin/env python
########################################################################
# File : dirac-dms-pfn-accessURL
# Author : Stuart Paterson
########################################################################
"""
Retrieve an access URL for a PFN given a valid DIRAC SE
"""
import DIRAC
from DIRAC.... | DIRACGrid/DIRAC | src/DIRAC/Interfaces/scripts/dirac_dms_pfn_accessURL.py | Python | gpl-3.0 | 1,262 | [
"DIRAC"
] | beac139c6cf673d762cc3c3510924ed51141ee0b0a7694ac44ba62c95d2de6c9 |
"""
Bok choy acceptance and a11y tests for problem types in the LMS
See also lettuce tests in lms/djangoapps/courseware/features/problems.feature
"""
import random
import textwrap
from abc import ABCMeta, abstractmethod
import ddt
import pytest
from selenium.webdriver import ActionChains
from capa.tests.response_xml... | ahmedaljazzar/edx-platform | common/test/acceptance/tests/lms/test_problem_types.py | Python | agpl-3.0 | 44,423 | [
"VisIt"
] | ad3a5f14de750114edd774f218e8d4c7b5bea756f6563c25624353d0d33af727 |
# Author: Prabhu Ramachandran
# License: BSD style
# Copyright (c) 2004, Enthought, Inc.
"""Tests for vtk_parser.py.
Note that the `test_parse_all` parses every single class in
VTK-Python. It organizes the methods and also tries to obtain the
method signature for every method in every class. If this runs
without cr... | liulion/mayavi | tvtk/tests/test_vtk_parser.py | Python | bsd-3-clause | 12,803 | [
"VTK"
] | 5acdaaffd5f876a4aaf00193f05506e5579af1e10b39002bbb38490ba7612703 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
Low-level objects providing an abstraction for the objects involved in the calculation.
"""
from __future__ import unicode_literals, division, print_function
import collections
import abc
import six
import ... | migueldiascosta/pymatgen | pymatgen/io/abinit/abiobjects.py | Python | mit | 42,955 | [
"ABINIT",
"CRYSTAL",
"Gaussian",
"pymatgen"
] | 37c15e7fc49c29fcf013046cbac243a24f960feb45cf53f298e407b7b9f24aa1 |
# -*- coding: utf-8 -*-
# Copyright 2011 Fanficdownloader team, 2016 FanFicFare team
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Un... | PlushBeaver/FanFicFare | fanficfare/story.py | Python | gpl-3.0 | 48,193 | [
"Galaxy"
] | 0ed23102cc2bf0091bdee3962e99233c62f71aad2960f5a87ccf57617ade9474 |
from __future__ import print_function, division
# Imports
import numpy as np
from scipy.misc import ascent, face
import cv2
import os
from numpy.fft import fftn, ifftn, fft2, ifft2
import timeit
import sys
###############################################################################
# Implementations supported
####... | comp-imaging/ProxImaL | proximal/utils/utils.py | Python | mit | 9,019 | [
"Gaussian"
] | 36d0dfd6e88e474a36e0ab4335a1d9d6baa15efc4bf2e41194448a5b6d746dcc |
# -*- coding: utf-8 -*-
"""
Select2 Widgets based on https://github.com/applegrew/django-select2.
These components are responsible for rendering
the necessary HTML data markups. Since this whole
package is to render choices using Select2 JavaScript
library, hence these components are meant to be used
with choice field... | DMOJ/site | judge/widgets/select2.py | Python | agpl-3.0 | 8,379 | [
"VisIt"
] | 4050bbe0296afd22f9b62cbfe9b94f71fbad5476a0645426d9e496880a4f39c6 |
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
# Copyright (C) 2017-2018 CIRCL Computer Incident Response Center Luxembourg (smile gie)
# Copyright (C) 2017-2018 Christian Studer
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Affero General Public Li... | FloatingGhost/MISP | app/files/scripts/stix2/misp2stix2.py | Python | agpl-3.0 | 63,756 | [
"Galaxy"
] | 8829a6e3603ffe466e767c9c6e62970ceb97a7fa612c040c708e73fb285319e7 |
# piddlePIL.py -- a Python Imaging Library backend for PIDDLE
# Copyright (C) 1999 Joseph J. Strout
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2 of the License, ... | adalke/rdkit | rdkit/sping/PIL/pidPIL.py | Python | bsd-3-clause | 14,086 | [
"RDKit"
] | 0b1bcb2ce0869798d635df057798eea9267e24a53ba631426955a53d1c36c089 |
#!/usr/bin/python
# Main source: http://docs.opencv.org/3.2.0/d7/d4d/tutorial_py_thresholding.html
import glob,sys,os
import cv2
import numpy as np
from matplotlib import pyplot as plt
import argparse
ap = argparse.ArgumentParser()
ap.add_argument("-i", "--image", required = True, help = "Image path.")
args = vars(... | gustavovaliati/ci724-finalwork-ppginfufpr-2016 | util/check_otsu_cv2_py2.py | Python | apache-2.0 | 1,441 | [
"Gaussian"
] | 2849168385c62d271b62f41863053031f238816890cdc43f4e452b6fbfec3a2c |
../../../../../../../share/pyshared/orca/scripts/apps/ubiquity/__init__.py | Alberto-Beralix/Beralix | i386-squashfs-root/usr/lib/python2.7/dist-packages/orca/scripts/apps/ubiquity/__init__.py | Python | gpl-3.0 | 74 | [
"ORCA"
] | 183368821c7ad88b9fc9a3bf268b530be96b77c8c81fa66702a072cfabc98fe1 |
"""
Course catalog page
"""
import re
from bok_choy.page_object import PageObject
from common.test.acceptance.pages.lms import BASE_URL
class CacheProgramsPage(PageObject):
"""
Visit this page to call the cache_programs management command.
This page makes a GET request to a view which is only meant t... | edx-solutions/edx-platform | common/test/acceptance/pages/lms/catalog.py | Python | agpl-3.0 | 718 | [
"VisIt"
] | 1fadc24ffc46dd4995da14454f0e4af645dac39de9de2cbd8fc2df8dd3ead2db |
# -*- coding: utf-8 -*-
import math
from .util import unify_types
class Vector(object):
"""Provides a basic vector"""
@classmethod
def zero(cls):
"""Returns the zero vector (0 | 0 | 0)"""
return cls(0, 0, 0)
def __init__(self, *args):
"""Vector(x, y, z)
Vector([x, y, z... | Kingdread/sgl | sgl/vector.py | Python | gpl-3.0 | 5,556 | [
"VTK"
] | d30f2056bf621fef0eabc5ea8b7dd97e9f8c6f9d9885f248e8d3815e56d9fadf |
#############################################################################
# Code for managing and training a variational Iterative Refinement Model. #
#############################################################################
# basic python
import cPickle
import numpy as np
import numpy.random as npr
from coll... | Philip-Bachman/Sequential-Generation | GPSImputer.py | Python | mit | 28,684 | [
"Gaussian"
] | eb1f25fc5255ffc291b8312298b910e254175dfa988711104e7dfdf2a7d7c3b6 |
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