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# Copyright (c) 2017 The WebRTC project authors. All Rights Reserved.
#
# Use of this source code is governed by a BSD-style license
# that can be found in the LICENSE file in the root of the source
# tree. An additional intellectual property rights grant can be found
# in the file PATENTS. All contributing project au... | WymanLyu/WYDemo | FXAudio/FXAudio/FXAudio/webRTC/webrtc/modules/audio_processing/test/py_quality_assessment/quality_assessment/test_data_generation.py | Python | apache-2.0 | 18,421 | [
"Gaussian"
] | 4b557d39e88c2a762a57fca398a2d7f351b5ad59d650f9e5d3c015c81c18a383 |
# -*- coding: utf-8 -*-
import datetime
from south.db import db
from south.v2 import DataMigration
from django.db import models
SECTION_LIST = [
("Physical Environment", 'physical-environment'),
("Indigenous State", 'indigenous-state'),
("Supernatural Practices", 'supernatural-practices'),
("Social Env... | shh-dlce/pulotu | website/apps/core/migrations/0006_add_section_data.py | Python | apache-2.0 | 8,618 | [
"VisIt"
] | 214672ece36eca560e5d95e94fb217fa950b724187863408f26afa93c2bcd56a |
"""This demo program uses the interface to SNES solver for variational
inequalities to solve a contact mechanics problems in FEniCS. The
example considers a heavy hyperelastic circle in a box of the same
size"""
# Copyright (C) 2012 Corrado Maurini
#
# This file is part of DOLFIN.
#
# DOLFIN is free software: you ... | MiroK/dolfin | demo/undocumented/contact-vi-snes/python/demo_contact-vi-snes.py | Python | gpl-3.0 | 3,899 | [
"VTK"
] | 8bf46fbbad3d8ddf0ee4cebf34d98f44534b7071504adb8f799649eff9e76186 |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of the G... | espressopp/espressopp | src/ParallelTempering.py | Python | gpl-3.0 | 7,506 | [
"ESPResSo"
] | ea62077ee35ad7779ebe5d6666a85de4a4703eb1c9012964effc64b76bf6329d |
# -*- coding: utf-8 -*-
# This program is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public License
# as published by the Free Software Foundation; either version 2
# of the License, or (at your option) any later version.
#
# This program is distributed in the hope tha... | michel-slm/bodhi | bodhi/tests/functional/test_updates.py | Python | gpl-2.0 | 70,861 | [
"VisIt"
] | f94fb5e8f495811ff54273e9e2291df29b364cb91f693b84a5c800eb1b97c239 |
import re
import string
import sys
import Atom
def readAtoms(file, fmt=None):
fmts={'coord' : readCoord, 'xyz' : readXYZ}
try:
func=fmts[fmt]
except KeyError, x:
print "Unknown format", x
sys.exit()
return func(file)
def readCoord(file):
"Read TURBOMOLE coord file, return list of Atoms"
atoms=[Atom.At... | juselius/gimic | tools/QCTools/QCTools.py | Python | gpl-2.0 | 2,589 | [
"TURBOMOLE"
] | 0aa6ec5eceb0e508698ef01e812c5bbd8407c55560b280288e9d1a7bd5cfcf1c |
from distutils.core import setup, Extension
from os.path import join, dirname, abspath
current_dir = dirname(abspath(__file__))
default_lib_dir = abspath(join(current_dir, 'build', 'lib'))
compile_args = [
'-std=c++11',
'-Wwrite-strings',
'-Wsign-compare',
'-fPIC',
'-pedantic',
'-Wall',
'... | galaxy-team/galaxpy | setup.py | Python | lgpl-3.0 | 2,363 | [
"Galaxy"
] | 8496fa45616f094f6461a0d45ffce83cb35191b66e572538deb9d4368231ea99 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
r""" A JSON data encoder and decoder.
This Python module implements the JSON (http://json.org/) data
encoding format; a subset of ECMAScript (aka JavaScript) for encoding
primitive data types (numbers, strings, booleans, lists, and
associative arrays) in a la... | seppius-xbmc-repo/ru | plugin.video.shura.tv/resources/lib/demjson.py | Python | gpl-2.0 | 90,082 | [
"CDK"
] | 3f74d5feb785927c15c67eddee56c6243535d454dcea95276f901358d6159734 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
import unittest
import json
import os
from pymatgen.electronic_structure.cohp import CompleteCohp, Cohp, IcohpValue, IcohpCollection
from pymatgen.electronic_structure.core import Spin, Orbital
from pymatgen.u... | dongsenfo/pymatgen | pymatgen/electronic_structure/tests/test_cohp.py | Python | mit | 36,290 | [
"pymatgen"
] | 27cc8c6efa6b19c65f37d5a788d3d27c5d903285df4aed055b6f1dc8060d3a8d |
#!/usr/bin/env python
#
# This file is part of Buildbot. Buildbot is free software: you can
# redistribute it and/or modify it under the terms of the GNU General Public
# License as published by the Free Software Foundation, version 2.
#
# This program is distributed in the hope that it will be useful, but WITHOUT
# A... | Frodox/buildbot | worker/setup.py | Python | gpl-2.0 | 5,594 | [
"Brian"
] | 53e030ec49e8c67111c7464fdfbab6da470f7c086e7ef3b72756338915215767 |
########################################################################
#
# (C) 2013, James Cammarata <jcammarata@ansible.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software ... | napkindrawing/ansible | lib/ansible/cli/galaxy.py | Python | gpl-3.0 | 31,822 | [
"Galaxy"
] | 55e3a3bb0e76b5fd270752f8cd06d42dc3dbb8c4d3464ce902059f906eea730c |
"""
Notifications for Android TV notification service.
For more details about this platform, please refer to the documentation at
https://home-assistant.io/components/notify.nfandroidtv/
"""
import logging
import io
import base64
import requests
import voluptuous as vol
from homeassistant.components.notify import (
... | ewandor/home-assistant | homeassistant/components/notify/nfandroidtv.py | Python | apache-2.0 | 6,561 | [
"Amber"
] | a430ae3301d716be4fad837539337c3b17869a7e09262bcfd9555b0b27612fae |
#!/usr/bin/python2.6
# -*- coding: utf8 -*-
from __future__ import with_statement
"""
"""
__author__ = "Jerome Samson"
__copyright__ = "Copyright 2013, Mikros Image"
from fabric.api import *
from fabric.colors import green, blue
env.timeout = 5
env.disable_known_hosts = True
env.source_path = ''
env.target_path = ''... | mikrosimage/OpenRenderManagement | fabfile.py | Python | bsd-3-clause | 10,636 | [
"Octopus"
] | b995afff2e97b06fda93a8e4a75cad835b2d9bda6e69d9f0e64f1a2f66d28a8d |
import unittest, random, sys, time
sys.path.extend(['.','..','py'])
import h2o, h2o_cmd, h2o_hosts, h2o_browse as h2b, h2o_import as h2i, h2o_glm, h2o_util
class Basic(unittest.TestCase):
def tearDown(self):
h2o.check_sandbox_for_errors()
@classmethod
def setUpClass(cls):
global localhost
... | janezhango/BigDataMachineLearning | py/testdir_hosts/test_GLM_mnist_s3n_fvec.py | Python | apache-2.0 | 3,635 | [
"Gaussian"
] | 4e5a32d6deec7bc9f2350afe6224a0b4d6527033293d9f25230f6a2290a50420 |
import math
from psi4 import core
from ..diis import DIIS, StoragePolicy, RemovalPolicy
def _RHF_orbital_gradient(self, save_fock: bool, max_diis_vectors: int) -> float:
gradient = self.form_FDSmSDF(self.Fa(), self.Da())
if save_fock:
if not self.initialized_diis_manager_:
storage_policy ... | susilehtola/psi4 | psi4/driver/procrouting/scf_proc/subclass_methods.py | Python | lgpl-3.0 | 3,657 | [
"Psi4"
] | 84d66b5fc0cae9ca3ce476706de0d51785a366a1a3f3f3cd53c603f7da3432ea |
'''
Module of classes used to test M-LOOP.
'''
from __future__ import absolute_import, division, print_function
__metaclass__ = type
import numpy as np
import threading
import mloop.utilities as mlu
import numpy.random as nr
import logging
import os
import time
class TestLandscape():
'''
Produces fake landsca... | michaelhush/M-LOOP | mloop/testing.py | Python | mit | 9,789 | [
"Gaussian"
] | d8c2fc3fdecebbe9600ec05c250f2500c16d6bf7bc3b3077a5b93d830d7c820a |
# http://pyrocko.org - GPLv3
#
# The Pyrocko Developers, 21st Century
# ---|P------/S----------~Lg----------
'''
This module provides basic signal processing for seismic traces.
'''
from __future__ import division, absolute_import
import time
import math
import copy
import logging
import numpy as num
from scipy impor... | pyrocko/pyrocko | src/trace.py | Python | gpl-3.0 | 117,846 | [
"Gaussian"
] | e90313fb82e78c59b5632c4d6c2df88d03c790e7f12fe48d0ba3f306dddbadd6 |
# -*- coding: utf-8 -*-
# module pyparsing.py
#
# Copyright (c) 2003-2019 Paul T. McGuire
#
# Permission is hereby granted, free of charge, to any person obtaining
# a copy of this software and associated documentation files (the
# "Software"), to deal in the Software without restriction, including
# without limitatio... | RalfBarkow/Zettelkasten | venv/lib/python3.9/site-packages/pip/_vendor/pyparsing.py | Python | gpl-3.0 | 273,394 | [
"VisIt"
] | 2756f8cf74bf2b0c895bb84a1a7a0dfa15d6f6980c23320fe904e1c98e7226ae |
"""Tasks for generating random gain fluctuations in the data and stacking them."""
import numpy as np
from caput import config, mpiarray, pipeline
from ..core import containers, task, io
class BaseGains(task.SingleTask):
"""Rudimentary class to generate gain timestreams.
The gains are drawn for times whi... | radiocosmology/draco | draco/synthesis/gain.py | Python | mit | 18,572 | [
"Gaussian"
] | 3f359a866d63e7786ed03202e1b22b0945c4cc961fe5808bc65ae6d82c72e9fa |
#!/usr/bin/env python3
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
#* https://www.gnu.org/licenses/lgp... | nuclear-wizard/moose | modules/porous_flow/doc/content/modules/porous_flow/tests/heat_advection/heat_advection.py | Python | lgpl-2.1 | 2,263 | [
"MOOSE"
] | 732dfdafac2fe06dd94419e3a019a796b544188466ccb41d2d8fb31a3aae5cdf |
import numpy as np
from scipy import ndimage
from .._shared.utils import assert_nD
__all__ = ['gabor_kernel', 'gabor_filter']
def _sigma_prefactor(bandwidth):
b = bandwidth
# See http://www.cs.rug.nl/~imaging/simplecell.html
return 1.0 / np.pi * np.sqrt(np.log(2) / 2.0) * \
(2.0 ** b + 1) / (2.0... | bennlich/scikit-image | skimage/filters/_gabor.py | Python | bsd-3-clause | 6,929 | [
"Gaussian"
] | 0a147c94805c6caa79f91321254ce33416f648fb5ce12f525f290e183c1d2d62 |
#!/usr/bin/env python
#-*- coding: utf-8 -*-
import numpy as np
from scipy.special import erfc
############ SIMPLE MATHEMATICAL FUNCTIONS ###########
def gaussian(x,amp,freq,HWHM): # for spectral fit
"""compute a Gaussian peak
Inputs
------
x : ndarray
the positions at which the signal should ... | charlesll/RamPy | rampy/functions.py | Python | gpl-2.0 | 9,677 | [
"Gaussian"
] | 3aec98002a10f0561c201b2c54b983e20f0af161ebba1b35364cac7579b41066 |
# Copyright (C) 2011-2012 CRS4.
#
# This file is part of Seal.
#
# Seal is free software: you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by the Free
# Software Foundation, either version 3 of the License, or (at your option)
# any later version.
#
# Seal is dis... | crs4/seal | seal/seqal/seqal_config.py | Python | gpl-3.0 | 6,596 | [
"BWA"
] | 44cc1ea1e412f931484714e967d97f1be65291dcd4d5a0b521c082753d7aeb55 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright (c) 2015, 2016 Adam.Dybbroe
# Author(s):
# Adam.Dybbroe <a000680@c20671.ad.smhi.se>
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation... | pytroll/mpop | mpop/satin/nc_osisaf_l2.py | Python | gpl-3.0 | 12,853 | [
"NetCDF"
] | 36640ef6a227cd2ac8af803b003bac9db757688396f676a04ece43b95d01087b |
import hashlib
import os
import traceback
from fsgamesys.amiga.adffile import ADFFile
from fsgamesys.amiga.workbenchdata import (
wb_204_files,
wb_204_floppies,
wb_204_startup_sequence,
wb_300_files,
wb_300_floppies,
wb_300_startup_sequence,
)
class WorkbenchExtractor(object):
def __init_... | FrodeSolheim/fs-uae-launcher | fsgamesys/amiga/workbenchextractor.py | Python | gpl-2.0 | 3,309 | [
"ADF"
] | a7348ded477c7ff774f1e769ee8bf296609450fa122ebca46e32f8d6490bd7e2 |
# -*- coding: utf-8 -*-
# <nbformat>3.0</nbformat>
# <codecell>
from pandas import *
import os, os.path
import sys
sys.path.append('/home/will/HIVReportGen/AnalysisCode/')
# <codecell>
store = HDFStore('/home/will/HIVReportGen/Data/SplitRedcap/2013-01-16/EntireCohort.hdf')
# <codecell>
redcap_data = store['redc... | JudoWill/ResearchNotebooks | PrioritizingPatients.py | Python | mit | 8,991 | [
"VisIt"
] | 53b668afb22f0b9e70ef0bdada1eb31d1b6d58f86ffdf5d6e68c38b1120c53c7 |
# Copyright (C) 2010-2018 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later v... | hmenke/espresso | testsuite/python/elc_vs_mmm2d_nonneutral.py | Python | gpl-3.0 | 5,370 | [
"ESPResSo"
] | 6133cb97f87d81c8db9acfbf1c9a1e3670d7bb7a8ba75bd28f6a273ee75ad530 |
import mock
import unittest
import stat
from types import ListType
from DIRAC import S_OK, S_ERROR
import DIRAC.DataManagementSystem.DB.FileCatalogComponents.SecurityPolicies.VOMSPolicy
# This just defines a few groups with their VOMSRole
diracGrps = {'grp_admin' : None,
'grp_data' : 'vomsProd',
... | marcelovilaca/DIRAC | DataManagementSystem/DB/FileCatalogComponents/SecurityPolicies/test/testVOMSPolicy.py | Python | gpl-3.0 | 63,684 | [
"DIRAC"
] | b8746eeb743575723e459be75ec77c1c11fed195a64f314b4c6f822b835969fc |
########################################################################
# $HeadURL$
# File : DownloadInputData.py
# Author : Stuart Paterson
########################################################################
""" The Download Input Data module wraps around the Replica Management
components to provide acc... | Sbalbp/DIRAC | WorkloadManagementSystem/Client/DownloadInputData.py | Python | gpl-3.0 | 13,992 | [
"DIRAC"
] | c2d6cb817b650afb7cb76a8da76eed8aabf78c74ba211bac830ebd7aaf3960e4 |
#!/usr/bin/env python
#
# Appcelerator Titanium Module Packager
#
#
import os, subprocess, sys, glob, string, optparse, subprocess
import zipfile
from datetime import date
cwd = os.path.abspath(os.path.dirname(sys._getframe(0).f_code.co_filename))
os.chdir(cwd)
required_module_keys = ['name','version','moduleid','desc... | mcongrove/TitaniumPebble | iphone/build.py | Python | apache-2.0 | 8,779 | [
"VisIt"
] | aa45e2292fd4f00c39eb7ac5f778a99719b1ad3102be603afba1a406f3103b56 |
#!/usr/bin/python
import Renascence
producer = Renascence.init(["./libAbstract_learning.xml"])
print producer.listAllFunctions()
print producer.listAllTypes()
x0 = producer.load('ALFloatMatrix', '../../machine_exam/handset/train.txt')
x1 = producer.load('ALFloatMatrix', '../../machine_exam/handset/test.txt')
#formula ... | jxt1234/Abstract_Learning | rf_train.py | Python | apache-2.0 | 518 | [
"ADF"
] | af08cdaa39c03c3d4c0a8287dc31be060d8e8cf38483a08ad1e99264eded0c8e |
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by appl... | sunqm/pyscf | pyscf/pbc/df/test/test_rsdf.py | Python | apache-2.0 | 4,942 | [
"PySCF"
] | 8736cf3e844e22b175d05a1d5eccdfa89daad5e30b724b19a30de842d77a9678 |
from __future__ import absolute_import
from __future__ import print_function
import os
import sys
import atexit
import signal
import logging
from pprint import pformat
from tornado.options import options
from tornado.options import parse_command_line, parse_config_file
from tornado.log import enable_pretty_logging
f... | pygeek/flower | flower/command.py | Python | bsd-3-clause | 4,098 | [
"VisIt"
] | 50baadab70c835800e3e0dc3a9b8f81d640a2a3ab547a4f7100385ce97c066b5 |
import logging
import textwrap
from copy import deepcopy
import numpy as np
import networkx as nx
from indra.explanation.pathfinding import get_path_iter, find_sources
try:
import paths_graph as pg
has_pg = True
except ImportError:
has_pg = False
logger = logging.getLogger(__name__)
class PathMetric(... | bgyori/indra | indra/explanation/model_checker/model_checker.py | Python | bsd-2-clause | 26,507 | [
"Pybel"
] | 4ea1ac2e9a67532643c7da3f11f72260b157fcccb5ba5c3889f90b4f5c6ab5d8 |
# -*- coding: utf-8 -*-
#
# csa_spatial_example.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the Lic... | sdiazpier/nest-simulator | pynest/examples/csa_spatial_example.py | Python | gpl-2.0 | 4,452 | [
"Gaussian",
"NEURON"
] | f67fa2e413130ae2b56085aae5d2d06d559f74592990e5f599fadf91d15897f5 |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2000-2007 Donald N. Allingham
# Copyright (C) 2007-2012 Brian G. Matherly
# Copyright (C) 2010 Jakim Friant
# Copyright (C) 2009-2010 Craig J. Anderson
# Copyright (C) 2014 Paul Franklin
#
# This program is free software; you can redistr... | beernarrd/gramps | gramps/plugins/drawreport/descendtree.py | Python | gpl-2.0 | 68,557 | [
"Brian"
] | 1944b2e4647c03b0a094be003f0e7a3c66abbef0903e3d4e1a0933a7d4fed465 |
#!/usr/bin/env python
'''
Mean field with k-points sampling
The 2-electron integrals are computed using Poisson solver with FFT by default.
In most scenario, it should be used with pseudo potential.
'''
from pyscf.pbc import gto, scf, dft
import numpy
cell = gto.M(
a = numpy.eye(3)*3.5668,
atom = '''C 0... | sunqm/pyscf | examples/pbc/20-k_points_scf.py | Python | apache-2.0 | 1,319 | [
"PySCF"
] | ccc8907fa6dda68e10ded5598e7473374ebcec8b9c0933458d3933e18285db8c |
from __future__ import print_function
from django.test import LiveServerTestCase
from selenium import webdriver
import os
from django.contrib.auth.models import User
# from imager_images.models import Photo, Album
import factory
import time
SCREEN_DUMP_LOCATION = os.path.join(
os.path.dirname(os.path.abspath(__fi... | nbeck90/game-chat | gamechat/gamechat/test_selenium.py | Python | mit | 8,720 | [
"VisIt"
] | 8f6968fd3d4e7ced16939bf3aeaff9dd72e4812f8fff20b35d21a81057447131 |
# Copyright Iris contributors
#
# This file is part of Iris and is released under the LGPL license.
# See COPYING and COPYING.LESSER in the root of the repository for full
# licensing details.
"""
Iris' data model representation of CF UGrid's Mesh and its constituent parts.
Eventual destination: dedicated module in :... | rcomer/iris | lib/iris/experimental/ugrid/mesh.py | Python | lgpl-3.0 | 105,605 | [
"NetCDF"
] | da593fdcadd0173c61ed4ba5480f91ced844b172963883ec9de52b7e63621e28 |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.db import models, migrations
class Migration(migrations.Migration):
dependencies = [
('let_me_app', '0010_auto_20160121_0831'),
]
operations = [
migrations.CreateModel(
name='CoachRecommendation',
... | oleg-chubin/let_me_play | let_me_app/migrations/0011_coachrecommendation_indexparametr_visitindex.py | Python | apache-2.0 | 1,910 | [
"VisIt"
] | a9c9a7c1c96013965327852b4f77753d5fee505c9e54e05a1251c744438aabcc |
# (c) 2012-2014, Michael DeHaan <michael.dehaan@gmail.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) an... | wshallum/ansible | lib/ansible/constants.py | Python | gpl-3.0 | 28,088 | [
"Galaxy",
"MOOSE"
] | 013d25f0b6dafb6bb889706e1ffdb7f16f01640b048411ad720d8b3aa8ea8f82 |
#!/usr/bin/env python
###############################################################################
#
# SageMathCloud: A collaborative web-based interface to Sage, IPython, LaTeX and the Terminal.
#
# Copyright (C) 2014, William Stein
#
# This program is free software: you can redistribute it and/or modify
# ... | pabryan/smc | src/scripts/build_sage.py | Python | gpl-3.0 | 2,199 | [
"Biopython",
"Brian"
] | e9536ba46472e90e001180155e86d01717e6701dcf700dd96934a90aaa8d4fcb |
import sys
import base64
import dis
import inspect
import numpy as np
if sys.version_info >= (3, ):
base64decode = base64.decodebytes
ordornot = lambda x:x
else:
base64decode = base64.decodestring
ordornot = ord
from . import _marching_cubes_lewiner_luts as mcluts
from . import _marching_cubes_lewine... | paalge/scikit-image | skimage/measure/_marching_cubes_lewiner.py | Python | bsd-3-clause | 12,009 | [
"Mayavi"
] | c1ef1b5f9b364be6ab0fb970ef5406bfc033c4be2910ac9ed6c07cdfa79718e9 |
# Copyright 2010 Google Inc.
#
# Permission is hereby granted, free of charge, to any person obtaining a
# copy of this software and associated documentation files (the
# "Software"), to deal in the Software without restriction, including
# without limitation the rights to use, copy, modify, merge, publish, dis-
# trib... | FATruden/boto | boto/gs/key.py | Python | mit | 42,318 | [
"VisIt"
] | dd6a0e7f0f19bed5a5af01e95031c4539b9396279269020032c9b1cf0381e17b |
""" This file contains defines parameters for nipy that we use to fill
settings in setup.py, the nipy top-level docstring, and for building the
docs. In setup.py in particular, we exec this file, so it cannot import nipy
"""
from __future__ import print_function, division, unicode_literals, absolute_import
# nipype ... | carolFrohlich/nipype | nipype/info.py | Python | bsd-3-clause | 6,233 | [
"Mayavi"
] | 31f217957639273ca4e01ba42b2e4485b9598879f5b9e6aa9d174889297b4a80 |
# Copyright (C) 2010-2018 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later v... | mkuron/espresso | testsuite/python/oif_volume_conservation.py | Python | gpl-3.0 | 2,820 | [
"ESPResSo",
"VTK"
] | 77d279032cd23a9d363364229e878f1e5c7d6aec885b9ae2d9ff92fe8a01f3dd |
"""
Simple script to test the impact of centroiding on PSF ellipticity and size.
:requires: PyFITS
:requires: NumPy
:requires: SciPy
:requires: matplotlib
:requires: VISsim-Python
:version: 0.1
:author: Sami-Matias Niemi
:contact: s.niemi@ucl.ac.uk
"""
import matplotlib
matplotlib.rc('text', usetex=True)
matplotlib.... | sniemi/EuclidVisibleInstrument | analysis/PSFcentroidingEffects.py | Python | bsd-2-clause | 15,429 | [
"Gaussian"
] | 3c01c10c6c596c100cb98e23ffe16ef893a852c6469db143c6a600cb8622de9b |
## INFO ########################################################################
## ##
## pypp ##
## ==== ... | petervaro/pypp | public_pypp.py | Python | gpl-3.0 | 3,424 | [
"VisIt"
] | eb3ce75d07c5fa88198ece7b6aff808adaf5570be1289e3324a66154c7a94b7c |
# ----------------------------------------------------------------------------
# Copyright (c) 2013--, scikit-bio development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# --------------------------------------------... | jdrudolph/scikit-bio | skbio/sequence/_sequence.py | Python | bsd-3-clause | 80,464 | [
"scikit-bio"
] | 566864169c2985dd72e5b6aba6897154924fd6b9b30572242d8aebdbfacff2cc |
#!/usr/bin/env python2
desc="""Fold sequences from BED file and report visual representation.
CHANGELOG:
"""
epilog="""Author:
l.p.pryszcz+git@gmail.com
Warsaw, 1/09/2015
"""
import argparse, os, re, sys, pysam
from datetime import datetime
import subprocess
import numpy as np
# https://github.com/pkerpedjiev/forg... | lpryszcz/bin | bed2RNALfold.py | Python | gpl-3.0 | 6,621 | [
"pysam"
] | 972b8e1c80339f834549c775cc9fa2ea463473031a07fc48eeb2557527c8a334 |
from DIRAC import S_OK, S_ERROR, gLogger
from DIRAC.Core.Utilities import ThreadScheduler
from DIRAC.Core.Base.ExecutorMindHandler import ExecutorMindHandler
from DIRAC.WorkloadManagementSystem.Client.JobState.JobState import JobState
from DIRAC.WorkloadManagementSystem.Client.JobState.CachedJobState import CachedJobSt... | DIRACGrid/DIRAC | src/DIRAC/WorkloadManagementSystem/Service/OptimizationMindHandler.py | Python | gpl-3.0 | 8,746 | [
"DIRAC"
] | 19553409235a3e04376d7a9b4e00415846366537e12dac00a3e4f8fb4f7a0b23 |
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""Tests for the Popularity Contest (popcontest) parser."""
import unittest
from plaso.lib import definitions
from plaso.parsers import popcontest
from tests.parsers import test_lib
class PopularityContestUnitTest(test_lib.ParserTestCase):
"""Tests for the popcontes... | log2timeline/plaso | tests/parsers/popcontest.py | Python | apache-2.0 | 5,388 | [
"ORCA"
] | dfa75d209d957de8485846b73e1f0492dcfb5e0d6760bc6259f828c87bb97226 |
#
# Copyright (c) 2014, Novartis Institutes for BioMedical Research Inc.
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are
# met:
#
# * Redistributions of source code must retain the above copyri... | AlexanderSavelyev/rdkit | rdkit/Chem/SimpleEnum/Enumerator.py | Python | bsd-3-clause | 8,769 | [
"RDKit"
] | f811fd5d32721850fe6033040325b88623b06951b31342a3e3aac35db09c0933 |
# Licensed under a 3-clause BSD style license - see LICENSE.rst
"""Mathematical models."""
# pylint: disable=line-too-long, too-many-lines, too-many-arguments, invalid-name
import numpy as np
from astropy import units as u
from astropy.units import Quantity, UnitsError
from .core import (Fittable1DModel, Fittable2DMo... | pllim/astropy | astropy/modeling/functional_models.py | Python | bsd-3-clause | 104,897 | [
"Gaussian"
] | 58c5581842a29d765307c0976dd589195ffc47b6af4532797a4357d2fe77b0d6 |
# Be sure to install boilerpipe (pip install boilerpipe)
"""
Extract main article content from HTML with Boilerpipe
In this script, we define a function that takes a single HTML news article as
input and returns the primary textual content of the article. We create an
SFrame from a sample of HTML articles, and then we... | dato-code/how-to | extract_article_content_from_HTML.py | Python | cc0-1.0 | 4,688 | [
"VisIt"
] | b8798798fe01e953cca21143ac3213d9032627a45a7c0a10653a307a7625d24b |
import numpy as np
class Prior:
def __init__(self, layer_sizes, var_targets):
# We refine the factor for the prior variance on the weights
n_samples = 3.0
v_observed = 1.0
self.a_w = 2.0 * n_samples
self.b_w = 2.0 * n_samples * v_observed
# We refine the factor ... | lenovor/Probabilistic-Backpropagation | theano/PBP_net/prior.py | Python | gpl-2.0 | 5,467 | [
"Gaussian"
] | 053d07f254f00fd2b6843c907925e3cc8789a3346781df0ed4eec151b8e99396 |
#! /usr/bin/env python
#
# hl_api.py
#
# This file is part of NEST.
#
# Copyright (C) 2004 The NEST Initiative
#
# NEST is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the License, or
# (at... | gewaltig/cython-neuron | cynest/nest/hl_api.py | Python | gpl-2.0 | 32,772 | [
"NEURON",
"VisIt"
] | 5933f20c033802833855c7b4ed54db32ecca878f03cda6451651327ca591ac3b |
# Copyright (C) 2006-2007 Aren Olson
# 2011 Brian Parma
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2, or (at your option)
# any later version.
#
# This p... | sjohannes/exaile | plugins/daapclient/__init__.py | Python | gpl-2.0 | 26,029 | [
"Brian"
] | 563a37054256fd6ccbdfb0413b497a632571fd0efc07d6a2fb3ba0daba0ccf63 |
#
# Parse tree nodes for expressions
#
from __future__ import absolute_import
import cython
cython.declare(error=object, warning=object, warn_once=object, InternalError=object,
CompileError=object, UtilityCode=object, TempitaUtilityCode=object,
StringEncoding=object, operator=object, l... | ryfeus/lambda-packs | HDF4_H5_NETCDF/source2.7/Cython/Compiler/ExprNodes.py | Python | mit | 538,989 | [
"VisIt"
] | d67b3010a9ac9edee264e93569e3c107fa73809366d95091e3168d096d7ef02f |
# Copyright 2014-2019 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by appl... | sunqm/pyscf | pyscf/adc/test/test_uadc/test_P_uadc_ea.py | Python | apache-2.0 | 3,086 | [
"PySCF"
] | 32f0113b5353d63d2d32dc7e2a74fbf46a1084e28e28ed7c43fceac3845c1e65 |
from enum import Enum
import fann2.libfann
class net_type(Enum):
'''
Definition of network types used by fann_get_network_type
'''
'''
Each layer only has connections to the next layer
'''
LAYER = fann2.libfann.LAYER
'''
Each layer has connections to all following layers
'... | kaz-fujii/pyfann | pyfann/enums.py | Python | lgpl-2.1 | 5,461 | [
"Gaussian",
"NEURON"
] | f1e7f96dbf0544d0aedcef0987991654ccab9a9e631dfe90d05c69749195e455 |
import argparse
import pysam
import re
import sys
from typing import Iterable, Iterator
from lhc.binf.genomic_coordinate import GenomicInterval
from lhc.io.locus import open_locus_file
def query(query_loci: Iterable[GenomicInterval], loci: pysam.TabixFile, *, direction: str = 'left', tolerance=0) -> Iterator[Genomic... | childsish/lhc-python | lhc/binf/loci/tools/query.py | Python | gpl-2.0 | 3,579 | [
"pysam"
] | 0a2218fcb5c019f3cabb107dcbdd493ccc9a1064f363603e119b1b44d4c0e203 |
from datetime import datetime
from attr import attrib, attrs
from firefed.feature import Feature, formatter
from firefed.output import out
from firefed.util import moz_to_unix_timestamp
@attrs
class Visit:
id = attrib()
from_visit = attrib()
visit_date = attrib(converter=moz_to_unix_timestamp)
url ... | numirias/firefed | firefed/feature/visits.py | Python | mit | 1,311 | [
"VisIt"
] | 8bee9aeaf575525f3eab3a072f5f92e7662816557013afda6dc85db7d4d78ffa |
import fnmatch
import os
import posixpath
import re
import sys
from ast import AST, Attribute, iter_fields, Name
if sys.version_info[0] == 3:
string_types = (str,)
else:
string_types = (basestring,) # noqa
IGNORED_DIRS = [
'*.egg-info',
'.bzr',
'.cache',
'.git',
'.hg',
'.idea',
'.... | akx/shoop | _misc/sanity_utils.py | Python | agpl-3.0 | 5,083 | [
"VisIt"
] | 9a529e9eb316ebb29e7cc5805eeb1776b4db911523c95ae76457ac71e26e0de5 |
# -*- coding: utf-8 -*-
import numpy as np
import sklearn.mixture
from sklearn.mixture._gaussian_mixture import _compute_precision_cholesky
class BlockDiagonalGaussianMixture(sklearn.mixture.GaussianMixture):
"""GMM with block diagonal covariance matrix
This class offers the training of GMM with block diagon... | k2kobayashi/sprocket | sprocket/model/diagGMM.py | Python | mit | 6,368 | [
"Gaussian"
] | a3b350ee3d251036183a26bda248e5abf4560af9b2081475ee0118b4353006d8 |
#!/usr/bin/python
# Simple script which convert the FITS headers associated to Brian McLean DSS images into simplified JSON files
# Fabien Chereau fchereau@eso.org
import sys
import os
import subprocess
def all():
for i in range(1,895):
str = "/home/fab1/prog/stellarium/util/dssheaderToJSON.py" + " S %i %i" % (i,i... | EvilTosha/Stellarium-GSoC12 | util/runAllDSS.py | Python | gpl-2.0 | 639 | [
"Brian"
] | 4fd9a55e5ff85feea9f9b9a549dc7de9a0505b2788695471dbb39f41ea54a3aa |
# Orca
#
# Copyright 2010 Joanmarie Diggs.
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any later version.
#
# This library i... | Alberto-Beralix/Beralix | i386-squashfs-root/usr/share/pyshared/orca/scripts/apps/Eclipse/script_utilities.py | Python | gpl-3.0 | 2,724 | [
"ORCA"
] | 63e09f64075f96999b18f833e2a9da322911557ebe0ac1d68788cdbf82add2bd |
# -*- coding: utf-8 -*-
#
# Copyright 2015 Pascual Martinez-Gomez
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required ... | masashi-y/depccg | depccg/semantics/ccg2lambda/ccg2lambda_tools.py | Python | mit | 8,052 | [
"VisIt"
] | 1838ffd962e0761468ea5d34818bec8c644db1dc3952f71c328cd8ebf43a6885 |
# -*- Mode: python; tab-width: 4; indent-tabs-mode:nil; coding: utf-8 -*-
# vim: tabstop=4 expandtab shiftwidth=4 softtabstop=4
""" Module: basic_observables
=========================
"""
from __future__ import print_function
import numpy as np
from scipy import stats
from MDAnalysis.core.groups import Atom, AtomGr... | Marcello-Sega/pytim | pytim/observables/basic_observables.py | Python | gpl-3.0 | 11,310 | [
"MDAnalysis"
] | d3e21599a1922850e7234a3f44498f943f541d974a71b28463681440257780a2 |
# Programmer: Brian Elliott, Taylor Boyd
# Started DATE, Last Updated 4/29/15
# Language: Python 3.4, PyCharm Editor
# Importing various modules and packages needed for the program
import math
import DecayClass
import time as time
import matplotlib.pyplot as plt
import sys
def main(): # defining the main function o... | L-E-iT/ISAT252Decay | DecayMain.py | Python | gpl-2.0 | 8,396 | [
"Brian"
] | 592796d10307d30b5f967cbaa87d5539957441c0dda1af2eb14d78590006de38 |
# Copyright (C) 2010-2014 CEA/DEN, EDF R&D
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any later version.
#
# This library ... | FedoraScientific/salome-paravis | test/VisuPrs/SWIG_scripts/C3.py | Python | lgpl-2.1 | 2,843 | [
"ParaView",
"VTK"
] | e28bf339fc222b9ca809d1ed9d84a39fdebfac00ef1f57357d4ece411ef89534 |
# -*- coding: utf-8 -*-
"""
Created on Wed Aug 3 11:31:57 2016
@author: cpkmanchee
beam_profile.py contains methods for dealing with beam profile images.
All definitions, usages, and calculations are consisten with ISO
standard 11146 (generally dealing with D4sigma beamwidths).
"""
import numpy as np
import scipy.op... | kikimaroca/beamtools | build/lib/beamtools/beam_profile.py | Python | mit | 9,793 | [
"Gaussian"
] | b0d603730e4135eb7526eb14fc0dd5ced5d842495807787710a53eaacdb12e19 |
# -*- coding: utf-8 -*-
###############################################################################
#
# This source file is part of the tomviz project.
#
# Copyright Kitware, Inc.
#
# This source code is released under the New BSD License, (the "License").
#
# Unless required by applicable law or agreed to in ... | cjh1/tomviz | tomviz/python/tomviz/itkutils.py | Python | bsd-3-clause | 13,929 | [
"VTK"
] | 29f7ecef21a6dd147c30ef32ce4575f1b9a921c858ba7fe401b8f82105cfb647 |
import re
from lxml import html
try:
from pyokc import helpers
from pyokc import magicnumbers
from pyokc.objects import MessageThread, Question, Session
from pyokc.settings import USERNAME, PASSWORD
except ImportError:
import helpers
import magicnumbers
from objects import MessageThread, Que... | tfmorris/pyokc | pyokc/pyokc.py | Python | mit | 27,507 | [
"VisIt"
] | c1ea2e8dc3335e7f1ca10a3ba17223986861f6eae37c164f219c6eaa4abae624 |
# -*- coding: utf-8 -*-
"""Mayavi/traits GUI for setting MRI fiducials."""
# Authors: Christian Brodbeck <christianbrodbeck@nyu.edu>
#
# License: BSD (3-clause)
import os
from ..externals.six.moves import map
from mayavi.core.ui.mayavi_scene import MayaviScene
from mayavi.tools.mlab_scene_model import MlabSceneModel... | teonlamont/mne-python | mne/gui/_fiducials_gui.py | Python | bsd-3-clause | 19,853 | [
"Mayavi"
] | f350f20f44f7ae6afb3d7233e293e79822173bb9d8ee22df3f730db17a9da660 |
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Parsplice(CMakePackage):
"""ParSplice code implements the Parallel Trajectory Splicing al... | iulian787/spack | var/spack/repos/builtin/packages/parsplice/package.py | Python | lgpl-2.1 | 1,281 | [
"LAMMPS"
] | 27d933db306fae12e37e04c73a9e2b67da3fff937c63068040124a8c76d895ea |
#!/usr/bin/env python
import image,numpy as np,auger,plot,dump
from scipy.ndimage.filters import gaussian_filter
###########################################################################################################
volume_offset=-149#waterbox sources
pgsrc_ct = image.image('stage2/data/source-139.mhd')
pgsrc_c... | brenthuisman/phd_tools | analysis.pgevo.waterbox.py | Python | lgpl-3.0 | 7,688 | [
"Gaussian"
] | 497b1bbb24a31bb865550babbbb28c164decb85543ab1b03e4ea13b7f061c86f |
#!/usr/bin/env python
from __future__ import print_function
import os
import sys
import argparse
import markdown
import pygments
from pygments.lexers import CppLexer, JavaLexer, CLexer, PythonLexer
from pygments.formatters import HtmlFormatter, TerminalFormatter, NullFormatter
start_delimiter = "/* START SOLUTION *... | BudgieInWA/notebook-gen | notebook-gen.py | Python | mit | 6,501 | [
"VisIt"
] | 889d966fc660c95fc7d06f21740515524837c7867af5fd9ad1611584bc7ce928 |
"""
Ported by Massimo Vassalli [http://mv.nanoscopy.eu massimo.vassalli@gmail.com]
"""
import numpy as np
from numpy.matlib import repmat
from numpy.random import randint
def randsample(y,K):
return y[randint(0,len(y)-1,K)]
def pwc_cluster(y,K=None,soft=False,beta=0,biased=False,display=True,stoptol=1e-5,maxiter... | waynegm/OpendTect-External-Attributes | Python_3/Jupyter/pwc_cluster.py | Python | mit | 5,300 | [
"Gaussian"
] | 7fb1e1d7e6bc68a07fb15cb167ea414750754f21bdbbac2232acafe05e2bedd9 |
#
# Copyright (c) 2008--2015 Red Hat, Inc.
#
# This software is licensed to you under the GNU General Public License,
# version 2 (GPLv2). There is NO WARRANTY for this software, express or
# implied, including the implied warranties of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. You should have received a c... | davidhrbac/spacewalk | backend/server/rhnChannel.py | Python | gpl-2.0 | 71,335 | [
"VisIt"
] | 54f2192d42d26e35e88564ce1135a95fc5a34d548046e30bf2470d6d95928059 |
# -*- coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2010 Async Open Source
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU Lesser General Public License as published by
## the Free Software Foundation; either version 2 of the License, or
##... | tiagocardosos/stoq | stoqlib/domain/payment/comment.py | Python | gpl-2.0 | 1,683 | [
"VisIt"
] | a5b0e23769ba8fa953e6fb2419d24fd639b03fa2d07944da44fc3308078626a9 |
# -*- coding: utf-8 -*-
"""
Acceptance tests for Video.
"""
from nose.plugins.attrib import attr
from unittest import skipIf, skip
from ..helpers import UniqueCourseTest, is_youtube_available, YouTubeStubConfig
from ...pages.lms.video.video import VideoPage
from ...pages.lms.tab_nav import TabNavPage
from ...pages.lms... | mtlchun/edx | common/test/acceptance/tests/video/test_video_module.py | Python | agpl-3.0 | 36,557 | [
"VisIt"
] | e4311cf3193642f4499ebd3a653436f7af11b5f21f3c5447a6cbc4650fc9358d |
from __future__ import division, print_function, absolute_import
from dipy.viz.utils import set_input
# Conditional import machinery for vtk
from dipy.utils.optpkg import optional_package
# Allow import, but disable doctests if we don't have vtk
vtk, have_vtk, setup_module = optional_package('vtk')
colors, have_vtk_... | villalonreina/dipy | dipy/io/vtk.py | Python | bsd-3-clause | 2,859 | [
"VTK"
] | f47063938cb3fd9f65cd465077879bc37cd52b31697b227f7d03cf8d76988a95 |
##############################################################################################
# HEADER
#
# cappylib/date_time - defines useful date and time functions for python scripts
#
# Copyright (C) 2008-2013 Chris Pappalardo <cpappala@yahoo.com>
#
# Permission is hereby granted, free of charge, to any person ob... | ChrisPappalardo/cappylib | cappylib/date_time.py | Python | mit | 11,921 | [
"COLUMBUS"
] | 37d433b8f066df52c6566819eadc47b83e82f0aa980372a0bad25d9aa4f1ae24 |
import logging, urllib2, time, json, os, math
import pymongo, bson
import numpy as np
import StringIO, gzip
import csv
import pandas as pd
from astropy.io import fits
from astropy import wcs, coordinates as coord, units as u
from astropy.cosmology import Planck13 as cosmo
from scipy.optimize import brentq, curve_fit, l... | willettk/rgz-analysis | python/bending_analysis.py | Python | mit | 126,005 | [
"Galaxy"
] | b8f9deb011768ca8ae98d4907532be2fecf745bd1f9b59cc7f58b3165ac07621 |
# Copyright (C) 2016
# Max Planck Institute for Polymer Research & JGU Mainz
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of th... | acfogarty/espressopp | testsuite/FileIOTests/dump_gromacs/test_dump_gromacs.py | Python | gpl-3.0 | 3,757 | [
"ESPResSo"
] | 38221a4e7f386320583fd597601f562112409ae0c6d03553e60b75d1eecbe902 |
# class generated by DeVIDE::createDeVIDEModuleFromVTKObject
from module_kits.vtk_kit.mixins import SimpleVTKClassModuleBase
import vtk
class vtkFLUENTReader(SimpleVTKClassModuleBase):
def __init__(self, module_manager):
SimpleVTKClassModuleBase.__init__(
self, module_manager,
vtk.v... | nagyistoce/devide | modules/vtk_basic/vtkFLUENTReader.py | Python | bsd-3-clause | 476 | [
"VTK"
] | 0b37a3129266166d8743675fd02bf955272ca0bc026fd30ecba312b7c5b1793b |
#!/usr/bin/env python3
import argparse
import glob
import math
import multiprocessing
import re
from collections import namedtuple
from pathlib import Path
import matplotlib.pyplot as plt
# import numexpr as ne
import numpy as np
import pandas as pd
from astropy import constants as const
# from astropy import units as... | lukeshingles/artistools | artistools/transitions.py | Python | mit | 20,099 | [
"Gaussian"
] | 98c42cc225e74949ff59d81e78844b80ed40b0d334f2a6cc69dc2267782120a1 |
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Isescan(Package):
"""A python pipeline to identify IS (Insertion Sequence) elements in
... | iulian787/spack | var/spack/repos/builtin/packages/isescan/package.py | Python | lgpl-2.1 | 2,864 | [
"BLAST",
"Biopython"
] | 723b9cff5c2bd73973f816fb89e8ee25b402ba664b5739d733f9eabcb1b83be7 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
"""
Script to upload images to wikipedia.
The following parameters are supported:
-keep Keep the filename as is
-filename: Target filename without the namespace prefix
-prefix: Add specified prefix to every filename.
-noverify Do not ask for verifi... | PersianWikipedia/pywikibot-core | scripts/upload.py | Python | mit | 7,971 | [
"VisIt"
] | dcbbc2a43580142af3cad8b05aa96458674388e3ea96f3b5261bde4bea537322 |
"""
`cirrina` - Opinionated web framework
Simple cirrina server example.
:license: LGPL, see LICENSE for details
"""
import logging
import asyncio
from aiohttp import web
import cirrina
#: Holds the login html template
LOGIN_HTML = '''<!DOCTYPE HTML>
<html>
<body>
<form method="post" action="/login">
... | michaelimfeld/cirrina | examples/basic/server.py | Python | lgpl-3.0 | 3,518 | [
"VisIt"
] | 42c3031b65a4288747aa4f36a6ba658cc0104c99eb51426d528d835a0c65778a |
#!/usr/bin/python
# -*- coding: utf-8 -*-
# (c) 2014, Ruggero Marchei <ruggero.marchei@daemonzone.net>
# (c) 2015, Brian Coca <bcoca@ansible.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
#... | andreaso/ansible | lib/ansible/modules/files/find.py | Python | gpl-3.0 | 13,478 | [
"Brian"
] | 94cca1d7fa88a6f39e1a06a7c7fbf723930e55e037af1caa8f56e3f0c166b956 |
import os
import UWG
import math
class TestBase(object):
"""
Test base class. This is inherited by all other tests.
"""
DIR_CURR = os.path.abspath(os.path.dirname(__file__))
DIR_EPW_PATH = os.path.join(DIR_CURR,"..","resources","epw")
DIR_UWGPARAM_PATH = os.path.join(DIR_CURR,"..","resources",... | saeranv/UWG_Python | tests/test_base.py | Python | gpl-3.0 | 1,800 | [
"EPW"
] | 2f49168634a5dda8ced371797ecdd6c178bfe3924f08758c1529849cb68ef5aa |
# -*- coding: utf-8 -*-
#
# Copyright 2017 - 2019 Brian R. D'Urso
#
# This file is part of Python Instrument Control System, also known as Pythics.
#
# Pythics is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, e... | dursobr/Pythics | pythics/opengl.py | Python | gpl-3.0 | 13,535 | [
"Brian"
] | 44f82403080fcede51ab1885127f8fe592b90730987862e50d44c914aa7fb6f2 |
'''-------------------------------------------------------------------------------
Tool Name: CreateInflowFileFromECMWFRunoff
Source Name: CreateInflowFileFromECMWFRunoff.py
Version: ArcGIS 10.3
Author: Environmental Systems Research Institute Inc.
Updated by: Environmental Systems Research Instit... | CI-WATER/erfp_data_process_ubuntu | CreateInflowFileFromECMWFRunoff.py | Python | mit | 11,496 | [
"NetCDF"
] | ec626e0dc7beda0867c8511071f16d11f059d5e38ba37c594941212468385901 |
# Create the expert sample for Radio Galaxy Zoo.
# We'll see how this compares to the user classifications done so far.
# Kyle Willett, 10 Jun 2014
import rgz
from numpy.random import random
from random import shuffle
# Paths
rgz_dir = '/Users/willettk/Astronomy/Research/GalaxyZoo/rgz-analysis'
# Curated subjects f... | willettk/rgz-analysis | python/expert_sample.py | Python | mit | 2,047 | [
"Galaxy"
] | ba0d102eb4db5a30cebb56c94b168b828932dd36b6d272fe423ab5dd2229a022 |
# $Id$
#
# Copyright (C) 2001-2008 greg Landrum and Rational Discovery LLC
# All Rights Reserved
#
"""
"""
import numpy
import random
from rdkit.ML.DecTree import QuantTree, ID3
from rdkit.ML.InfoTheory import entropy
from rdkit.ML.Data import Quantize
def FindBest(resCodes, examples, nBoundsPerVar, nPossibleRes... | ptosco/rdkit | rdkit/ML/DecTree/BuildQuantTree.py | Python | bsd-3-clause | 13,414 | [
"RDKit"
] | 0b62f38002c92613d6cee42f290ef4725334dc21feadd54ae9bf20c1b819298e |
"""Code to interact with various Primer-related programs from EMBOSS.
"""
# standard library
import string
from xml.sax import handler
# Martel
import Martel
from Martel import RecordReader
# biopython stuff
from Bio.ParserSupport import AbstractConsumer
from Bio.ParserSupport import EventGenerator
import primersear... | dbmi-pitt/DIKB-Micropublication | scripts/mp-scripts/Bio/Emboss/Primer.py | Python | apache-2.0 | 8,654 | [
"Biopython"
] | 102b3380b0f23945ef989f95698bc03756b1ce79bd0a8fe977888463314f74a0 |
# -*- coding: utf-8 -*-
# Copyright 2007-2022 The HyperSpy developers
#
# This file is part of HyperSpy.
#
# HyperSpy is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at y... | jat255/hyperspy | hyperspy/_components/skew_normal.py | Python | gpl-3.0 | 9,956 | [
"Gaussian"
] | 84dd44477fa28c0af2e4e82714b9adb1e3f8d61187b8acf87af794e78f87c595 |
#
# CPM modulation and demodulation.
#
#
# Copyright 2005-2007,2011 Free Software Foundation, Inc.
#
# This file is part of GNU Radio
#
# SPDX-License-Identifier: GPL-3.0-or-later
#
#
# See gnuradio-examples/python/digital for examples
from math import pi
import numpy
from gnuradio import gr, filter
from gnuradio ... | dl1ksv/gnuradio | gr-digital/python/digital/cpm.py | Python | gpl-3.0 | 8,295 | [
"Gaussian"
] | ba22a77ff11cf0a39d93193c94b7ece40626fbb22957ad44a693d79d4fbd75d7 |
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