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"""
Cards used in the Tutorial missions
"""
from ..utils import *
##
# Hero Powers
class TU4d_003:
"""Shotgun Blast"""
requirements = {PlayReq.REQ_ENEMY_TARGET: 0, PlayReq.REQ_TARGET_TO_PLAY: 0}
activate = Hit(TARGET, 1)
class TU4e_002:
"""Flames of Azzinoth"""
requirements = {PlayReq.REQ_NUM_MINION_SLOTS: 2}... | jleclanche/fireplace | fireplace/cards/tutorial/all.py | Python | agpl-3.0 | 1,753 | [
"BLAST"
] | 456d4fbfab7dc1e9207baf3f4d9fd52a90d0e9bb07836f9cbdf53ed9ca3e8d1e |
# Copyright 2018 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# https://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, s... | GoogleCloudPlatform/python-docs-samples | composer/workflows/kubernetes_pod_operator.py | Python | apache-2.0 | 12,464 | [
"VisIt"
] | 7638f8823a7032fe9950a78ce8b419840ec2bef74bd9a911e5fa1c4e4d5379bb |
model = """
# Generated by PySCeS 0.7.2 (2010-08-10 13:12)
# Keywords
Description: Dimerisation model (003), variant 03
Modelname: Dimerisation03
Output_In_Conc: True
Species_In_Conc: False
# GlobalUnitDefinitions
UnitVolume: litre, 1.0, 0, 1
UnitLength: metre, 1.0, 0, 1
UnitSubstance: item, 1.0, 0, 1
UnitArea: met... | SystemsBioinformatics/stochpy | stochpy/pscmodels/dsmts_003_03.py | Python | gpl-3.0 | 3,789 | [
"PySCeS"
] | b2de2db28ff3ba0a76a284aa1a31da816303db2b71d6afb80b55d31f29fcfdf2 |
"""
Define common steps for instructor dashboard acceptance tests.
"""
# pylint: disable=C0111
# pylint: disable=W0621
from __future__ import absolute_import
from django.conf import settings
from lettuce import world, step
from mock import patch
from nose.tools import assert_in # pylint: disable=E0611
from coursew... | hkawasaki/kawasaki-aio8-1 | lms/djangoapps/instructor/features/common.py | Python | agpl-3.0 | 4,568 | [
"VisIt"
] | 4a4b22ac51858a05b5c0ea9ebfe3c1abf78d15162cd4e53311afe9920eeff918 |
# connect to registration table
# search entries with status "job_launched" or "job_running"
# check the job slurm-status, e.g., scontrol show jobid 5037088
# 1. Invalid job id specified: means the job is off queue
# 1.1 check job folder if input.log file is there
# Yes: job already finished
# No: job is abor... | KEHANG/autoQM | autoqm/checker.py | Python | mit | 4,808 | [
"Gaussian",
"Pybel"
] | 31952fac34d929b9ee511568e2587da8e09b1a890a1277d2d1c3cbe980a40a67 |
""" tests for Graph OperationHandlerBase module
"""
import unittest
# # SUT
from DIRAC.RequestManagementSystem.private.OperationHandlerBase import DynamicProps
class DynamicPropTests(unittest.TestCase):
"""
.. class:: DynamicPropTests
"""
def testDynamicProps(self):
"""test dynamic props"""... | DIRACGrid/DIRAC | src/DIRAC/RequestManagementSystem/private/test/Test_OperationHandlerBase.py | Python | gpl-3.0 | 1,746 | [
"DIRAC"
] | 71b4d1dcd853fbade80d36e9edf4e9b1b2248fd00fbc054359572126ee4f96c3 |
"""
Get information about the network.
In this case, we are interested in a small set of neurons. We go through each of
the neurons and get connectivity information about each connection it has with
another cell.
This type of script could be useful for visualizing data, generating reports,
or any number programmatic ... | openworm/PyOpenWorm | examples/NetworkInfo.py | Python | mit | 3,784 | [
"NEURON"
] | d9a45e41261fd5d3ec93fd7dec0372482c68de06c74095c990c1f975bf799fc8 |
import functools
import inspect
import itertools
import sys
import warnings
from collections import defaultdict
from collections import deque
from collections import OrderedDict
import attr
import py
import _pytest
from _pytest import nodes
from _pytest._code.code import FormattedExcinfo
from _pytest._code.code impor... | ekwoodrich/python-dvrip | env/lib/python3.5/site-packages/_pytest/fixtures.py | Python | mit | 51,298 | [
"VisIt"
] | 38af2b8326ee9cfa1dd721351209e995ce35572c74d2a02c80286a49fa5e260d |
"""
Set of common passwords
"""
from __future__ import (absolute_import, division, print_function, unicode_literals)
try:
from builtins import * # pylint: disable=unused-wildcard-import,redefined-builtin,wildcard-import
except ImportError:
import sys
print("WARNING: Cannot Load builtins for py3 compatibili... | rgant/saas-api-boilerplate | common/common_passwords.py | Python | gpl-3.0 | 13,627 | [
"Brian",
"CRYSTAL",
"Jaguar",
"TINKER"
] | b713e9b65c294a4dcf311793510a6fa6e9c64e38a68f12d799c1763804d3c7ac |
# -*- coding: utf-8 -*-
# Copyright (C) 2016 Fabio Falcinelli, Maximilian Hils
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) an... | ffalcinelli/pydivert | pydivert/windivert.py | Python | lgpl-3.0 | 9,345 | [
"VisIt"
] | 657a3a3467a34951e18726bfa422be38030ad993e9f33ae1a9d2dfbf36598891 |
#!/usr/bin/env python
# Copyright (c) 2012 The Chromium Authors. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
'''Unit tests for grd_reader package'''
import os
import sys
if __name__ == '__main__':
sys.path.append(os.path.join(os.path.dir... | JoKaWare/GViews | tools/grit/grit/grd_reader_unittest.py | Python | bsd-3-clause | 10,420 | [
"xTB"
] | 08d2fa32546c2da2b100a0576f7bbe99e0e454592ed2fa47764f4ff8599273d1 |
#!/usr/bin/env python3
import numpy as np
from LoLIM.main_plotter import *
from LoLIM.interferometry import read_interferometric_PSE as R_IPSE
from LoLIM import read_LMA as LMA
## these lines are anachronistic and should be fixed at some point
from LoLIM import utilities
utilities.default_raw_data_loc = "/home/brian... | Bhare8972/LOFAR-LIM | LIM_scripts/examples/run_main_plotter.py | Python | mit | 4,052 | [
"Brian"
] | da46bc8167b40ffa1e4821d9cb9778cab3929fb106d47c8b1ae88b6c10c77db3 |
# modified mexican hat wavelet test.py
# spectral analysis for RADAR and WRF patterns
# NO plotting - just saving the results: LOG-response spectra for each sigma and max-LOG response numerical spectra
import os, shutil
import time
import pickle
import numpy as np
from scipy import signal, ndimage
import matplo... | yaukwankiu/armor | tests/modifiedMexicanHatTest14.py | Python | cc0-1.0 | 6,084 | [
"Gaussian"
] | 73541629676bb18fc7737b243c804ae8105d502236d00f98fb50593b46916dae |
from __future__ import annotations
import copy
import os
import pytest
from .test_scan_static_reflection_predictor import ( # noqa: F401, used as test fixture; isort:skip
data as static_test,
)
class Data:
def __init__(self, dials_regression):
path = os.path.join(
dials_regression,
... | dials/dials | tests/algorithms/spot_prediction/test_scan_varying_reflection_predictor.py | Python | bsd-3-clause | 10,967 | [
"CRYSTAL"
] | 815f2a3f197c3b1c2e3213a115cee5ba5c4c781875d2a6971a12b85bcf4b8261 |
#!/usr/bin/env pvbatch
try: paraview.simple
except: from paraview.simple import *
import pviz
import sys
if __name__== '__vtkconsole__' : oviz=iviz() # for interactive sessions only
else: oviz = pviz.viz(sys.argv) # Instantiate a new visualisation
isocontour=FindSource('isoqcrit') # Find the part named isoqcrit in s... | ruizanthony/pviz | examples/advanced/restoreStateChangeIsoValueQcrit_bulletTime.py | Python | lgpl-3.0 | 1,074 | [
"ParaView"
] | 77df62a1d40b1a96a65b4ddac686deb3e04d2815f7d98cb5f95182fa0f684033 |
from collections import deque, defaultdict
import itertools
from boltons.iterutils import chunked
from cycler import cycler
import numpy as np
from .run_engine import Msg
from .utils import Struct, snake_cyclers, Subs
class ScanBase(Struct):
"""
This is a base class for writing reusable scans.
It provide... | dchabot/bluesky | bluesky/scans.py | Python | bsd-3-clause | 28,981 | [
"Gaussian"
] | 48cd05a95de162ad51db1b141973b20c766099f46183f475dfdfd3380857954c |
# pylint: disable=C0111
# pylint: disable=W0621
import os
from lettuce import world, step
from nose.tools import assert_true, assert_in # pylint: disable=no-name-in-module
from django.conf import settings
from student.roles import CourseStaffRole, CourseInstructorRole, GlobalStaff
from student.models import get_user... | nicky-ji/edx-nicky | cms/djangoapps/contentstore/features/common.py | Python | agpl-3.0 | 11,918 | [
"VisIt"
] | 861496a78d589f0f9b6ed381ddfdd1347ddcf5232f7feeaeb4dd36c0e1204ec3 |
"""
Base class for tests with enrollment capability
"""
import datetime
from bok_choy.promise import EmptyPromise
from regression.pages.whitelabel.basket_page import CyberSourcePage, MultiSeatBasketPage, SingleSeatBasketPage
from regression.pages.whitelabel.const import BILLING_INFO, CARD_HOLDER_INFO, PASSWORD
from ... | edx/edx-e2e-tests | regression/tests/whitelabel/course_enrollment_test.py | Python | agpl-3.0 | 8,195 | [
"VisIt"
] | c5f43eac7065ebc9be4bcfe351d10b41d478a6cba98a4cea267566b94819124e |
################################################################################
#
# Copyright (C) 2012-2013 Eric Conte, Benjamin Fuks
# The MadAnalysis development team, email: <ma5team@iphc.cnrs.fr>
#
# This file is part of MadAnalysis 5.
# Official website: <https://launchpad.net/madanalysis5>
#
# MadAnal... | Lana-B/Pheno4T | madanalysis/core/launcher.py | Python | gpl-3.0 | 12,513 | [
"VisIt"
] | 45b6fa6c081d65e3ddf70bcf8b9274a06c3f7cd030f0b9c68f452d56f9c34bc2 |
import struct
import os
from shapely.geometry import Point, Polygon, LineString
class TIN(object):
def __init__(self, tin_path):
self.path = tin_path
# Required files
self.tnxy = os.path.join(self.path, 'tnxy.adf')
self.tnz = os.path.join(self.path, 'tnz.adf')
self.tnod =... | SouthForkResearch/CHaMP_Metrics | lib/tin.py | Python | gpl-3.0 | 16,487 | [
"ADF"
] | 80ea3baa63fbb8cf5c0c73c54346bcdc5fe099b879442c4078a3c41872d2005e |
# Copyright 2008-2009 by Peter Cock. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
#
# This module is for reading and writing IntelliGenetics format files as
# SeqRecord object... | NirBenTalLab/proorigami-cde-package | cde-root/usr/lib64/python2.4/site-packages/Bio/SeqIO/IgIO.py | Python | mit | 3,665 | [
"Biopython"
] | e920db8745830b3f566f1bdcb23142c2e07fbfe3d2b30f080b6b9c8aaa9b7086 |
# Copyright 2018 The TensorFlow Probability Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law o... | tensorflow/probability | tensorflow_probability/python/math/psd_kernels/exp_sin_squared.py | Python | apache-2.0 | 6,423 | [
"Gaussian"
] | 9e2a60b09436491a2d59a80bc9d812b449e7d11a0913776b7272fcaa2af29d5e |
# Methods to restore the database after the migration. applied by Rick.
import sys
import pickle
import simplejson
import xlrd
from db_functions.pubmed_functions import add_single_article_full
from article_text_mining.full_text_pipeline import add_multiple_full_texts_all, ephys_table_identify
from article_text_min... | lessc0de/neuroelectro_org | dbrestore.py | Python | gpl-2.0 | 20,583 | [
"NEURON"
] | f9c029e93291f8b5d60ff1cfc95a8fe22ad8ffb3e2be6140dce86a3432369d7d |
# vi: ts=8 sts=4 sw=4 et
#
# form.py: base class for Draco forms
#
# This file is part of Draco2. Draco2 is free software and is made available
# under the MIT license. Consult the file "LICENSE" that is distributed
# together with this file for the exact licensing terms.
#
# Draco2 is copyright (c) 1999-2007 by the Dr... | geertj/draco2 | draco2/form/form.py | Python | mit | 2,567 | [
"VisIt"
] | 77e3d1cda859ff3dc5f1acb307acd51d92155d9dc05e8a7ab3f24c0dc3cedd0e |
# Example in which a cube is used to define an implicit function (through vtkImplicitDataSet)
# which is then used to clip a sphere
import vtk
sphere = vtk.vtkSphereSource()
sphere.SetCenter(1, 1, 1)
sphere.SetRadius(1)
sphere.Update()
cube = vtk.vtkCubeSource()
cube.SetBounds(-1, 1, -1, 1, -1, 1)
cube.Update()
# C... | lorensen/VTKExamples | src/Python/ImplicitFunctions/ImplicitDataSet.py | Python | apache-2.0 | 1,545 | [
"VTK"
] | 0efffa8c6acb23e144918a6710755d5fef5a4dd504628ac41f8e47ea4151aed8 |
#!/usr/bin/env python3
# This script takes the game name as parameter and returns the GOG Galaxy game id
# Return with exit code 127 if no game was found for the given title
# Return with exit code 1 if there are multiple games for the given name
# Return with exit code 0 if there is exactly one match found
import re... | vanfanel/scummvm | devtools/gog_gameid.py | Python | gpl-2.0 | 2,082 | [
"Galaxy"
] | 1fa9c149c85a876c379304e4c2015ce41e3975caed2e57b7bba99f9a4e606ff7 |
from django.conf.urls import patterns, include, url
from tracking.views import *
urlpatterns = patterns(
'',
url(r'^logout/$',LogoutView.as_view(), name="logout"),
url(r'^home/$', IndexView.as_view(), name="index"),
url(r'^add/organization/$', OrganizationView.as_view(), name="add-organization"),
... | Heteroskedastic/Dr-referral-tracker | tracking/urls.py | Python | mit | 2,078 | [
"VisIt"
] | 0046ac58af880d74cbb3b663c0bc99ff412d2fc20c9f9f1241e218cc4985798c |
#!/usr/bin/env python
################################################################################
# bitly.py
# pyanalysis
#
# Created by Brian Baughman on 10/26/11.
# Copyright 2011 Brian Baughman. All rights reserved.
################################################################################
from os imp... | bbaugh/gcn-parser | bitly.py | Python | gpl-2.0 | 1,417 | [
"Brian"
] | 7377ecdc6bd37800e59b37c4d61493fdc9acca415ec88471ade742d3fe0850b3 |
from shyft import api
from netcdftime import utime
import numpy as np
""" These are the current supported regular time-step intervals """
delta_t_dic = {'days': api.deltahours(24), 'hours': api.deltahours(1), 'minutes': api.deltaminutes(1),
'seconds': api.Calendar.SECOND}
def convert_netcdf_time(time_... | felixmatt/shyft | shyft/repository/netcdf/time_conversion.py | Python | lgpl-3.0 | 1,170 | [
"NetCDF"
] | 39ffdf28047787fe31ed4f24119c826871b482adee152aa986767b8d3108f7d0 |
"""
==============================
Probability Calibration curves
==============================
When performing classification one often wants to predict not only the class
label, but also the associated probability. This probability gives some
kind of confidence on the prediction. This example demonstrates how to di... | glemaitre/scikit-learn | examples/calibration/plot_calibration_curve.py | Python | bsd-3-clause | 5,902 | [
"Gaussian"
] | 786b6674558cca9f0812007b7dbc11788cf95b588d61848caa81a36de4c1d84b |
# -*- coding: utf-8 -*-
import emoji
import os
import sys
import random
import getpass
import difflib
import subprocess
import webbrowser
import pkgtools.pypi as pp
import github
from travispy import TravisPy
from time import sleep
# from cookiecutter.main import generate_context, generate_files
import keyring
im... | takluyver/Love | love/love.py | Python | mit | 11,720 | [
"VisIt"
] | 076bcdab850acb3f607e429f4146508b7f1918ab088b7ed1e341968e5f4afbd3 |
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
#######################
# v0.1 2 march 2017
#######################
import glob
import os
# numpy
# import numpy
# improved system calls
import random
# def get_uniform(min, max):
# return numpy.random
# .uniform(min, max)
##############
# constants
##############... | fgr1986/vlsi_memristor_compact_model | spectre/bipolar_aSiCCuTiN/experiment_advanced_variability_degradation/generate_variability.py | Python | gpl-3.0 | 1,653 | [
"Gaussian"
] | 6b5932f6a957b5d07de39564460cfcb049c85bd23d60822ceadd4636890cae3a |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of the G... | govarguz/espressopp | src/analysis/MeanSquareDispl.py | Python | gpl-3.0 | 2,580 | [
"ESPResSo"
] | cd46d531ac72a312a894fd345417d673e237fe0bbfcdaa65c0e142be8079a640 |
#
# GMSK modulation and demodulation.
#
#
# Copyright 2005-2007,2012 Free Software Foundation, Inc.
#
# This file is part of GNU Radio
#
# GNU Radio is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either v... | analogdevicesinc/gnuradio | gr-digital/python/digital/gmsk.py | Python | gpl-3.0 | 10,987 | [
"Gaussian"
] | 159e62205229f8c3b2753295112ee109951c77ad5259998c000acbe496f891f3 |
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class PyPyani(PythonPackage):
"""pyani is a Python3 module that provides support for calculating... | iulian787/spack | var/spack/repos/builtin/packages/py-pyani/package.py | Python | lgpl-2.1 | 1,473 | [
"BLAST",
"Biopython"
] | a254b4c39eaf58fe49f83cad0c0b62d9a0cc8c7fd8ce405ec114e6e146c95151 |
# Copyright (C) 2003-2005 Peter J. Verveer
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions
# are met:
#
# 1. Redistributions of source code must retain the above copyright
# notice, this list of conditions and the following d... | scipy/scipy-svn | scipy/ndimage/filters.py | Python | bsd-3-clause | 39,251 | [
"Gaussian"
] | 46958175c426f9c0d96e9cdf1a139f15690ddf2d6bb1d7aac4465217bebed5be |
#!/usr/bin/env python
# encoding: utf-8
"""A regular SOM."""
from collections import UserList
from .som import normalize
from .som import SOM, Topology, Node
from itertools import chain, islice
from random import choice
from math import exp
import numpy as np
import matplotlib.pyplot as plt
class BasicSOM(SOM):
... | Procrat/som | som/basic_som.py | Python | mit | 8,023 | [
"Gaussian"
] | 72a8cc866d1dd8e505fd614316fc1fbd087c318d98e3b9786927171c2f2afdec |
# -*- coding: utf-8 -*-
# This file is part of Shuup.
#
# Copyright (c) 2012-2016, Shoop Commerce Ltd. All rights reserved.
#
# This source code is licensed under the AGPLv3 license found in the
# LICENSE file in the root directory of this source tree.
import os
import pytest
from django.core.urlresolvers import reve... | suutari/shoop | shuup_tests/browser/admin/test_product_create.py | Python | agpl-3.0 | 2,339 | [
"VisIt"
] | 12c48149d285b4b55dd00340f957f978dd2edde216881ad0bab597f3479afc13 |
# -*- coding: utf-8 -*-
# Copyright 2020 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law o... | googleapis/python-vision | scripts/fixup_vision_v1p3beta1_keywords.py | Python | apache-2.0 | 6,991 | [
"VisIt"
] | 11e97dbc3b1cdb3b6ed9c9faa31e676cc44cecd8c0148dbb7a3cc6b35fdec15b |
"""
Tags Controller: handles tagging/untagging of entities and provides autocomplete support.
"""
from galaxy.model import History, HistoryTagAssociation, Dataset, DatasetTagAssociation, \
HistoryDatasetAssociation, HistoryDatasetAssociationTagAssociation, Page, PageTagAssociation
from galaxy.web.base.controller i... | volpino/Yeps-EURAC | lib/galaxy/web/controllers/tag.py | Python | mit | 10,704 | [
"Galaxy"
] | 8c601862f18e07190deb645d8fd3888979e392ba29eb0f8aacb1d5059081e396 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from pymatgen.analysis.chemenv.utils.scripts_utils import strategies_class_lookup
from os.path import expanduser, exists
from os import makedirs
import json
from pymatgen import SETTINGS
"""
This module conta... | gVallverdu/pymatgen | pymatgen/analysis/chemenv/utils/chemenv_config.py | Python | mit | 7,142 | [
"pymatgen"
] | 5569654a97ab528624d41f5ea257a51a85a9158764c4662344c17cc7892ed010 |
#
#-*- coding:utf-8 -*-
"""
Gentoo-keys - action_map.py
Primary api interface module data
@copyright: 2015 by Brian Dolbec <dol-sen@gentoo.org>
@license: GNU GPL2, see COPYING for details.
"""
from collections import OrderedDict
Seed_Actions = ['----seeds----', 'add-seed', 'fetch-seed',
'upda... | gentoo/gentoo-keys | gkeys/gkeys/action_map.py | Python | gpl-2.0 | 16,565 | [
"Brian"
] | 241f83d43a6dfe33493acbe7df5d37b91ce6921b7616912db2f36b6a8cb7c8f1 |
# coding=utf-8
"""
The end developer will do most of their work with the PayPalInterface class found
in this module. Configuration, querying, and manipulation can all be done
with it.
"""
import types
import logging
from pprint import pformat
import warnings
import requests
from paypal.settings import PayPalConfig
f... | KabbageInc/paypal-python | paypal/interface.py | Python | apache-2.0 | 20,021 | [
"VisIt"
] | 7d1f57289af798988d741c2fa8ab03e3471989daca8aea0b7842b57b882821a7 |
# -*- coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2012 Async Open Source <http://www.async.com.br>
## All rights reserved
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU General Public License as published by
## the Free Software Foundati... | andrebellafronte/stoq | stoqlib/gui/test/test_serviceitemeditor.py | Python | gpl-2.0 | 1,234 | [
"VisIt"
] | 1d818bdc0fc92f7e61cdea40587a2ca40fd5e86c78cda9b511f2b75d7ddd8312 |
#
# Copyright (c) 2017 nexB Inc. and others. All rights reserved.
# http://nexb.com and https://github.com/nexB/scancode-toolkit/
# The ScanCode software is licensed under the Apache License version 2.0.
# Data generated with ScanCode require an acknowledgment.
# ScanCode is a trademark of nexB Inc.
#
# You may not use... | yashdsaraf/scancode-toolkit | src/typecode/magic2.py | Python | apache-2.0 | 8,769 | [
"VisIt"
] | aaeb6c1431b070064aa940093b6b88a064546dbdeecec7a64b4c80ac9474c3ad |
#
# tsne.py
#
# Implementation of t-SNE in Python. The implementation was tested on Python 2.5.1, and it requires a working
# installation of NumPy. The implementation comes with an example on the MNIST dataset. In order to plot the
# results of this example, a working installation of matplotlib is required.
# The ... | masoodking/LinkPrediction | SME/tsne_python-old/tsne.py | Python | bsd-3-clause | 6,654 | [
"Gaussian"
] | 972f0181a5c093c3a565f7cdbf0c95fd93d57fe085314e61d4f11cebd177de7e |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""Views tests for the OSF."""
from __future__ import absolute_import
import datetime as dt
import httplib as http
import json
import math
import time
import unittest
import mock
from nose.tools import * # noqa PEP8 asserts
from modularodm import Q
from modularodm.exce... | kch8qx/osf.io | tests/test_views.py | Python | apache-2.0 | 176,699 | [
"Brian"
] | 3d9acec5b705242754a48e3f9c6a81551d7b23f2f314398d0a1e1f8cc3c57203 |
from __future__ import absolute_import, division, print_function
from jaspyx.visitor import BaseVisitor
class FuncIsinstance(BaseVisitor):
def func_isinstance(self, obj, type_):
self.output('(')
self.visit(obj)
self.output(' instanceof ')
self.visit(type_)
self.output(')')
| ztane/jaspyx | jaspyx/visitor/func_isinstance.py | Python | mit | 320 | [
"VisIt"
] | 598400d33ccb4996d85106d401491d53b7d6fcd57cf6031d5628d9d9c2db8167 |
""" Utilities for dealing with correlated inputs."""
from equadratures.parameter import Parameter
from equadratures.poly import Poly, evaluate_model, evaluate_model_gradients
from equadratures.basis import Basis
import numpy as np
from scipy import stats
from scipy.stats import multivariate_normal, norm
from scipy.lina... | Effective-Quadratures/Effective-Quadratures | equadratures/correlations.py | Python | lgpl-2.1 | 11,100 | [
"Gaussian"
] | 0b18a092b1135b85a9a2257faef34139f290c76b45aee99bb27b3e52c0499a33 |
"""
coreblog3
==================
coreblog3 is a blog hosting software developed at the top of Aha framework, which is a framework made specially for Google App Engine.
Here are some quick instruction to get started with coreblog3 and make your own blog site on Google App Engine. For more details, visit our website :-)... | Letractively/aha-gae | applications/aha.application.coreblog3/setup.py | Python | bsd-3-clause | 2,712 | [
"VisIt"
] | b6bf1cfc82151065b060b5e003f3add093028a88c3a677a516f3af7667afca49 |
"""
Do the initial configuration of a DIRAC component
"""
from __future__ import print_function
__RCSID__ = "$Id$"
from DIRAC import gConfig
from DIRAC import exit as DIRACexit
from DIRAC.ConfigurationSystem.Client.Helpers import getCSExtensions
from DIRAC.FrameworkSystem.Client.ComponentInstaller import gComponentIn... | petricm/DIRAC | tests/Jenkins/dirac-cfg-add-option.py | Python | gpl-3.0 | 1,464 | [
"DIRAC"
] | 212686903f1ee74fefa26f168286ee47effd0889189f64d0686fd55989d7ad53 |
"""
Code for "Generative Adversarial Networks". Please cite the ArXiv paper in
any published research work making use of this code.
"""
import functools
wraps = functools.wraps
import itertools
import numpy
np = numpy
import theano
import warnings
from theano.compat import OrderedDict
from theano.sandbox.rng_mrg impor... | hans/adversarial | __init__.py | Python | bsd-3-clause | 37,595 | [
"Gaussian"
] | acf0f2aed3e6a3951087974dfb184703ce65ea5a70e5208c333e33d70a28e699 |
from ...cfg.cfg_utils import CFGUtils
from .graph import GraphVisitor
class LoopVisitor(GraphVisitor):
"""
:param angr.analyses.loopfinder.Loop loop: The loop to visit.
"""
def __init__(self, loop):
super(LoopVisitor, self).__init__()
self.loop = loop
self.reset()
def suc... | angr/angr | angr/analyses/forward_analysis/visitors/loop.py | Python | bsd-2-clause | 725 | [
"VisIt"
] | c097b226fe6929a01bd747b081e008f837d59102fe1dc081e623e26906045673 |
#!/usr/bin/env python
import argparse
import multiprocessing
import os
import queue
import re
import shutil
import pandas
import pysam
from Bio import SeqIO
INPUT_BAM_DIR = 'input_bam_dir'
INPUT_VCF_DIR = 'input_vcf_dir'
OUTPUT_VCF_DIR = 'output_vcf_dir'
OUTPUT_METRICS_DIR = 'output_metrics_dir'
def get_base_file_... | lparsons/tools-iuc | tools/vsnp/vsnp_add_zero_coverage.py | Python | mit | 8,655 | [
"pysam"
] | 697719447017fff1435930dc687765ba338d3c4ac484a39e9d65811b1a48f46e |
# Copyright (C) 2012 Alex Nitz, Tito Dal Canton
#
#
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by the
# Free Software Foundation; either version 3 of the License, or (at your
# option) any later version.
#
# This program is... | bema-ligo/pycbc | pycbc/inject/inject.py | Python | gpl-3.0 | 15,995 | [
"Gaussian"
] | 557678746c313fafc581253b6471405ae7465453e1a4f6aa4117a11e6abbf58b |
# Orca
#
# Copyright 2005-2008 Sun Microsystems Inc.
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any later version.
#
# This... | ruibarreira/linuxtrail | usr/lib/python3/dist-packages/orca/scripts/apps/gtk-window-decorator/script.py | Python | gpl-3.0 | 4,328 | [
"ORCA"
] | 49e2ada0ec0b393af51cab82883a1dbf323f0584569d21e36e3ce76c1069a7e7 |
# Copyright (c) 2010 OpenStack, LLC.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in wr... | Intel-bigdata/swift | test/unit/common/middleware/test_staticweb.py | Python | apache-2.0 | 23,940 | [
"VisIt"
] | 8eb9391ebc0fc53026c84e65a538108fd7c2699514fe6a8775d2350cb40712c6 |
# SPDX-License-Identifier: Apache-2.0
# Copyright Contributors to the Rez Project
"""
Implements a well defined versioning schema.
There are three class types - VersionToken, Version and VersionRange. A Version
is a set of zero or more VersionTokens, separate by '.'s or '-'s (eg "1.2-3").
A VersionToken is a string ... | instinct-vfx/rez | src/rez/vendor/version/version.py | Python | apache-2.0 | 50,578 | [
"VisIt"
] | 708d633806b480018ffd2a8c861b35202064da77068dfd964d3cdd4603374abf |
id2salary = { 0: 1000.0, 3: 990, 1: 1200.50 }
names = ["Larry", "Curly", "", "Moe"]
print {x: id2salary[i] for (x, i) in zip(names, range(len(names))) if i in id2salary}
| darobin/notes | ctm/pytasks/0.5.26.py | Python | mit | 173 | [
"MOE"
] | a7db2e5e22060cbb8afcb3f080619e49fddf0c472d4aeef10436393ea539525b |
##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-64... | mfherbst/spack | var/spack/repos/builtin/packages/r-phyloseq/package.py | Python | lgpl-2.1 | 2,512 | [
"Bioconductor"
] | 1c5d18ff66940ad3e3e835eb60ef42785f5bde70a113a1e34d1f9e01236f7e17 |
#!/usr/bin/env python
import os
from ase import Atoms
from ase.calculators.dftb import Dftb
from ase.optimize import QuasiNewton
from ase.io import write
d = 1.10
test = Atoms('2O', positions=[(0., 0., 0.), (0., 0., d)])
test.set_pbc([False, False, False])
test.set_calculator(Dftb(label='o2',write_dftb=True,do_spin_... | conwayje/ase-python | doc/ase/calculators/dftb_ex1_relax.py | Python | gpl-2.0 | 493 | [
"ASE"
] | 842900d4dd84b28fc850bdd56c44806f2a0de917e514a0ff8ae1508df7e9c86a |
import csv
import itertools
import json
import re
import sys
import threading
import time
import traceback as tb
from datetime import datetime as dt
import jsonpickle
import psutil
import requests
from colorker.service import bigquery, drive, fusiontables, gee
from colorker.utils import caught, deep_update
from django... | jkachika/columbus | pyedf/views.py | Python | mit | 81,529 | [
"COLUMBUS"
] | ce5fc5e661c46cc84b8bcf89c6f7bd92bcba5300481965e26afdf5a6d48350a1 |
import io
import os
import threading
import unittest
import urllib.robotparser
from test import support
from http.server import BaseHTTPRequestHandler, HTTPServer
class BaseRobotTest:
robots_txt = ''
agent = 'test_robotparser'
good = []
bad = []
def setUp(self):
lines = io.StringIO(self.r... | FFMG/myoddweb.piger | monitor/api/python/Python-3.7.2/Lib/test/test_robotparser.py | Python | gpl-2.0 | 10,218 | [
"Brian"
] | c6dfb9c3a06bc8741679c7ff2d0d2494d8b68f83b0e3c5e8168e1f7c293836ad |
import numpy as np
from ase.structure import bulk
from gpaw import FermiDirac, MethfesselPaxton, MixerSum
from gpaw.utilities.bulk2 import GPAWRunner
strains = np.linspace(0.98, 1.02, 9)
a0 = 2.84
atoms = bulk('Fe', 'bcc', a0)
atoms.set_initial_magnetic_moments([2.3])
def f(name, dist, k, g):
tag = '%s-%02d-%2d' %... | qsnake/gpaw | doc/tutorials/lattice_constants/iron.py | Python | gpl-3.0 | 866 | [
"ASE",
"GPAW"
] | 8f32674bb0d09b4819257226cedc6659e954471f487768160b6d962dfe59063e |
from django.core.urlresolvers import reverse
from karaage.tests.unit import UnitTestCase
from karaage.projects.models import Project
from fixtures import (PersonFactory, AccountFactory,
ProjectQuotaFactory, ProjectRenamedFactory)
class ProjectRenameTestCase(UnitTestCase):
def test_project_... | NeCTAR-RC/karaage-user | kguser/tests/test_project_rename.py | Python | gpl-3.0 | 4,591 | [
"VisIt"
] | a44db914b96a5085b09433c5512c5721634df1c75707a9f7db55db92fa6fc1fa |
# -*- coding: utf-8 -*-
"""Functions for FIR filter design."""
from __future__ import division, print_function, absolute_import
from math import ceil, log
import operator
import warnings
import numpy as np
from numpy.fft import irfft, fft, ifft
from scipy.special import sinc
from scipy.linalg import (toeplitz, hankel... | jamestwebber/scipy | scipy/signal/fir_filter_design.py | Python | bsd-3-clause | 47,921 | [
"Brian"
] | 1d3e68549299579d9186b2be77002fcd912966d3490ac9f6ff3582ce0ebd3007 |
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
import unittest
from pymatgen.analysis.interfaces.coherent_interfaces import (
CoherentInterfaceBuilder,
from_2d_to_3d,
get_2d_transform,
get_rot_3d_for_2d,
)
from pymatgen.symmetry.analyzer import Spacegroup... | materialsproject/pymatgen | pymatgen/analysis/interfaces/tests/test_coherent_interface.py | Python | mit | 1,979 | [
"pymatgen"
] | 39fd5f4d80b761bf0203c1c1ebfe4a40761a833742461e796fb20282ed9ddc2b |
import os, sys
import unittest
from trex import CTRexScenario
from stateful_tests.trex_general_test import CTRexGeneral_Test
from trex_stl_lib.api import *
import time
from nose.tools import nottest
class CStlGeneral_Test(CTRexGeneral_Test):
"""This class defines the general stateless testcase of the TRex traffic ... | dimagol/trex-core | scripts/automation/regression/stateless_tests/stl_general_test.py | Python | apache-2.0 | 5,428 | [
"Elk"
] | 8131f49a37b9bdc0dedcc9e591fbd86dc17241673e5ab2080c4a394676f3b8ed |
import logging
from collections import defaultdict
from slimit.parser import Parser
from ..constants import *
from ..parse.models import APINode
from ..parse.models import AstNode
from ..parse.models import CorpusNode
from ..processing.normalize import Normalizer
def js_parse(src):
"""
Parses snippets
:p... | LudditeLabs/query-reform | reform/parse/javascriptcorpus.py | Python | apache-2.0 | 4,668 | [
"VisIt"
] | 390b5dfb25a5a497dbd901e4e4a35e8f697f18455082f6a96ef077f02060439f |
#!/usr/bin/env python3
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
#* https://www.gnu.org/licenses/lgp... | nuclear-wizard/moose | python/mooseutils/tests/test_yaml_load.py | Python | lgpl-2.1 | 1,788 | [
"MOOSE"
] | 81780fd37d58f936de156ea199321c5342bc72c85a43507fde88347d44e45cce |
""" Decorators for DIRAC.
"""
from __future__ import print_function
import os
import inspect
import functools
import traceback
__RCSID__ = "$Id$"
def deprecated(reason, onlyOnce=False):
""" A decorator to mark a class or function as deprecated.
This will cause a warnings to be generated in the usual log if... | chaen/DIRAC | Core/Utilities/Decorators.py | Python | gpl-3.0 | 6,211 | [
"DIRAC"
] | 4012ee5cd076a90a7f13626ab08e1c0abd89897f2e58fe754d01492ae70c2581 |
# -*- coding: utf-8 -*-
# This is moose.server.
# It accepts simulation request on a specified TCP port (default 31417).
# It simulates the given file (usually a archive file e.g., tar.bz2) and sends
# back artefacts generated by simulation (mostly images); and streams data from
# moose.Tables back to client.
__autho... | dilawar/moose-core | python/moose/server.py | Python | gpl-3.0 | 12,836 | [
"MOOSE"
] | d4a16479b1285d2a75f4969772a11de78aa06bf844f40b1c91f581a6101c6600 |
#!/usr/bin/env python
import os, time
import numpy as np
from ase import Atoms
from ase.parallel import paropen
from ase.units import fs, Hartree, Bohr
from ase.io.trajectory import PickleTrajectory
from ase.md.verlet import VelocityVerlet
from gpaw import GPAW
from gpaw.mpi import world
# --------------------------... | ajylee/gpaw-rtxs | gpaw/test/big/ehrenfest/na2_md.py | Python | gpl-3.0 | 2,504 | [
"ASE",
"GPAW"
] | 1453d9ec47483be3a838bd5c39a0d4d6e9cb7846de758608a7ba63d5cb2691a0 |
#!/usr/bin/env python
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | gkc1000/pyscf | pyscf/dft/xc/utils.py | Python | apache-2.0 | 1,635 | [
"PySCF"
] | 427793c50c87109b0a31b11a6029591c03e0bf0da2d274870da955832d426788 |
# MolMod is a collection of molecular modelling tools for python.
# Copyright (C) 2007 - 2008 Toon Verstraelen <Toon.Verstraelen@UGent.be>
#
# This file is part of MolMod.
#
# MolMod is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public License
# as published by the Free... | woutersmet/Molmodsummer | test/io/__init__.py | Python | gpl-3.0 | 967 | [
"CP2K"
] | 191f29459c8160f178f0ce3498bab38a36a4b6ef9515425ee7aacfbe2b4d4dc9 |
"""Pre-trained ImageNet networks."""
import sys
from typing import Any, Callable, Dict, NamedTuple, Optional, Tuple
import numpy as np
import tensorflow as tf
import tensorflow.contrib.slim as tf_slim
# pylint: disable=unused-import
# Workaround of missing slim's import
# see https://github.com/tensorflow/tensorflow/... | ufal/neuralmonkey | neuralmonkey/encoders/imagenet_encoder.py | Python | bsd-3-clause | 9,426 | [
"VisIt"
] | 8709ae0bfba0b538a14cd45250cc484b2b87414b8edf1a062d24a87cda4cac43 |
#!/usr/bin/python3
########################################################################
# Solves problem 172 from projectEuler.net.
# Calculates the number of numbers of 18 digits that no digit is
# repeated more than 3 times.
# Copyright (C) 2011 Santiago Alessandri
#
# This program is free software: y... | sanSS/programming-contests | project-euler/problem172.py | Python | gpl-3.0 | 1,887 | [
"VisIt"
] | 149f6c011332dbaffc988d006059ccf5611e3db2f9fa6b75121045f3c5e8179b |
from contextlib import contextmanager
from stat import S_IXOTH
from os import pardir, stat, chmod, access, X_OK, pathsep, environ
from os import makedirs
from os.path import join, dirname, isfile, split
from os.path import exists
from tempfile import mkdtemp
from shutil import rmtree
from sys import version_info
if ve... | jmchilton/lwr | test/test_utils.py | Python | apache-2.0 | 6,842 | [
"Galaxy"
] | d1b94cac0dc532fe31750dd768d09af0884a1d8b382f82a71e018f78e77229d8 |
#!/usr/local/sci/bin/python
#***************************************
# 22 March 2014 KMW - v1
# Plots months of missing data for each station over time (x axis) and colours by
# WMO region (y axis).
#
#************************************************************************
# START
#**... | Kate-Willett/Climate_Explorer | PYTHON/PlotTemporalCoverage_SEP2014.py | Python | cc0-1.0 | 16,920 | [
"NetCDF"
] | 4da0f89c0671750b2a9d87c99f68413f6088f223413daea30c281305fb0082f6 |
#!/usr/bin/env python3
#
# Copyright (C) 2018 INRA
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is... | geraldinepascal/FROGS | tools/affiliation_filters/affiliation_filters.py | Python | gpl-3.0 | 44,830 | [
"BLAST"
] | df2bfb3e541a9728268988b71568c9d0a2ac615d801ed3aad504b93f377cbb65 |
"""annotate.py
this module is part of the ciderseq distribution.
"""
import os,sys
import uuid
import tempfile
import json
from Bio import SeqIO
from Bio.Blast.Applications import NcbitblastnCommandline
from Bio.Blast import NCBIXML
def annotate(settings,inputfile,logger):
#init blast
if not settings['blastinit']... | hirschhm/ciderseq | cider/annotate.py | Python | agpl-3.0 | 5,731 | [
"BLAST"
] | a3bc8bc3fd9c7615515b2b3c7bdc51a8f752de4271c930626d09eb3146969849 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import vtk
'''
There are two alternative ways to apply the transform.
1) Use vtkTransformPolyDataFilter to create a new transformed polydata.
This method is useful if the transformed polydata is needed
later in the pipeline
To do this, set USER_MATRIX = Tru... | lorensen/VTKExamples | src/Python/GeometricObjects/OrientedCylinder.py | Python | apache-2.0 | 4,551 | [
"VTK"
] | 85e138d4e5b02e82dd3e6f27ca53623bda0f099121544e7536ea273edbb000ee |
'''
Created on Jan 9, 2011
@author: mkiyer
chimerascan: chimeric transcript discovery using RNA-seq
Copyright (C) 2011 Matthew Iyer
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3... | madhavsuresh/chimerascan | chimerascan/deprecated/merge_read_pairs.py | Python | gpl-3.0 | 7,872 | [
"pysam"
] | 412b75e6db980fdadd1f61d73b784b5abc18dd674754f008a92e07e9e3789dde |
from copy import deepcopy as dc
from ase import Atoms
from pyiid.experiments.elasticscatter import ElasticScatter
from pyiid.calc.calc_1d import Calc1D
from pyiid.sim.nuts_hmc import NUTSCanonicalEnsemble
from ase.cluster import Octahedron
import matplotlib.pyplot as plt
from ase.visualize import view
# Lets set up th... | CJ-Wright/pyIID | examples/Au_NP_PDF.py | Python | bsd-3-clause | 1,688 | [
"ASE"
] | 92fa2b37da664ea12b1a36a87054b2db8a2f307c0a6c722b9eeb05ff6c2b6bc8 |
"""
It is used to test the MonitoringReporter.
It requires MonitoringDB which is based on elasticsearch and MQ which is optional...
CS (not strictly necessary):
Systems
{
Monitoring
{
Certification
{
Databases
{
MonitoringDB
{
Host = localhost
Port = 9200
... | ic-hep/DIRAC | tests/Integration/Monitoring/Test_MonitoringReporter.py | Python | gpl-3.0 | 25,597 | [
"DIRAC"
] | 761d88fd31194eb47bb400cee8631b18fc5b9d06943d732a170714bc6da00f68 |
from __future__ import division
from warnings import warn
import numpy as np
binary_erosion = None # expensive, from scipy.ndimage
binary_dilation = None # expensive, from scipy.ndimage
from menpo.visualize.base import ImageViewer
from .base import Image
from .boolean import BooleanImage
class OutOfMaskSampleErro... | mozata/menpo | menpo/image/masked.py | Python | bsd-3-clause | 48,033 | [
"Gaussian"
] | bc0d755e2fa3719f58f33fa514ebb848f6f9ced6db5eea0800dc3f523f702d94 |
# coding: utf-8
# Distributed under the terms of the MIT License.
from ababe.stru.element import Specie
from collections import Counter, OrderedDict
from operator import itemgetter
from fnmatch import fnmatch
class GeneralIO(object):
def __init__(self, gcell):
self.gcell = gcell
def write_file(self... | unkcpz/ababe | ababe/io/io.py | Python | mit | 1,356 | [
"VASP"
] | ddf290a45aa1cac343251f84b8d561c3043e3bd6117306fe90d718b319fa4694 |
from WebAppDIRAC.Lib.WebHandler import WebHandler, WErr, WOK, asyncGen
from DIRAC import gConfig, S_OK, S_ERROR, gLogger
from DIRAC.Core.Utilities import Time
import json
class ExampleAppHandler(WebHandler):
AUTH_PROPS = "authenticated"
@asyncGen
def web_getJobData(self):
timestamp = Time.dateTime().strfti... | chaen/WebAppDIRAC | WebApp/handler/ExampleAppHandler.py | Python | gpl-3.0 | 843 | [
"DIRAC"
] | 2dde1d99ad49c7e1ad3bcad946994ab8d4fa9c6de8238cb03f93e04fd9dabfff |
from __future__ import division
import numpy as np
from matplotlib import pyplot as plt
from pyhsmm import models, distributions
np.random.seed(0)
np.seterr(invalid='raise')
obs_hypparams = dict(mu_0=np.zeros(2),sigma_0=np.eye(2),kappa_0=0.05,nu_0=5)
### generate data
num_modes = 3
true_obs_distns = [distributio... | mattjj/pyhsmm | examples/meanfield.py | Python | mit | 960 | [
"Gaussian"
] | 43c0623f260a54269978d25ed1e13864970bb7825ca7c01d26741cca6de5c330 |
from __future__ import print_function, division
import collections
from sympy.core.add import Add
from sympy.core.basic import Basic, Atom
from sympy.core.expr import Expr
from sympy.core.function import count_ops
from sympy.core.logic import fuzzy_and
from sympy.core.power import Pow
from sympy.core.symbol import Sym... | mafiya69/sympy | sympy/matrices/matrices.py | Python | bsd-3-clause | 134,821 | [
"DIRAC",
"Gaussian"
] | 0eb091dfcb269e76dbe469fd773e86e67ea9d03d29cd8e2b785f73ec9b3b1907 |
#!/usr/bin/env python
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
Script to plot density of states (DOS) generated by an FEFF run
either by site, element, or orbital
"""
__author__ = "Alan Dozier"
__credits__ = "Anubhav Jain, Shyue Ping Ong"
__copy... | gmatteo/pymatgen | pymatgen/cli/feff_plot_dos.py | Python | mit | 2,284 | [
"FEFF",
"pymatgen"
] | 8b488145f932083db144939221cd1bb8a05b1e0c592a14ef7d1ca9cbc8137794 |
############################################################################
############################################################################
# Importing necessary packages
import numpy as np
import scipy
import matplotlib.pyplot as plt
from sklearn.utils import check_random_state
from sklearn.utils import... | nickdex/cosmos | code/artificial_intelligence/src/gaussian_naive_bayes/gaussiannaivebayesmoons.py | Python | gpl-3.0 | 6,511 | [
"Gaussian"
] | 0b785c07e89d6e4c62d3b3fcfa31d3e76aa77d48e496ca24b40646cbe160a0fd |
"""In-memory representation of interfaces and other data structures.
The objects in this module are used to build a representation of an XML interface
file in memory.
@see: L{reader} constructs these data-structures
@see: U{http://0install.net/interface-spec.html} description of the domain model
@var defaults: Defau... | dsqmoore/0install | zeroinstall/injector/model.py | Python | lgpl-2.1 | 51,186 | [
"VisIt"
] | 12e62b3db746ebd4d1eded99f6200a72af30d050b9e88aae46b56c9aa7029951 |
#!/usr/bin/env python
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | gkc1000/pyscf | pyscf/lib/logger.py | Python | apache-2.0 | 6,165 | [
"PySCF"
] | 8df3accd2ca129a4e5aae8d4841520821283274bcb447d7cbf9a228cb3a0295e |
from behave import *
@given('we have behave installed')
def step_impl(context):
pass
@when('we implement a test')
def step_impl(context):
assert True is not False
@then('behave will test it for us!')
def step_impl(context):
assert context.failed is False
@given(u'I put Red Tree Frog in a blender,')
def ... | mc706/behave-web-seed | features/steps/example.py | Python | mit | 1,510 | [
"Galaxy"
] | 3783c775d3d939377d59b7fd854ab1af89918c1620dfd08442d43c6573a6ab07 |
"""Functions for showing information about Census variables."""
from __future__ import absolute_import, division, print_function, unicode_literals
import requests
import os
import re
import json
from collections import OrderedDict
def censusvar(src, year, var):
"""Download information on a list of variables from Ce... | jtleider/censusdata | censusdata/variable_info.py | Python | mit | 7,798 | [
"MOE"
] | ab932314db42e9daf54ead4610c9b33309d0e795b357f577b1a68f4af2a3f8ac |
# pmx Copyright Notice
# ============================
#
# The pmx source code is copyrighted, but you can freely use and
# copy it as long as you don't change or remove any of the copyright
# notices.
#
# ----------------------------------------------------------------------
# pmx is Copyright (C) 2006-2013 by Daniel ... | Alwnikrotikz/pmx | pmx/forcefield.py | Python | lgpl-3.0 | 72,047 | [
"Gromacs"
] | 16540dabd465e29841e2e6e4f6760481542d1f29372977440d5bd4234e161e43 |
#
# The Python Imaging Library.
# $Id$
#
# Binary input/output support routines.
#
# Copyright (c) 1997-2003 by Secret Labs AB
# Copyright (c) 1995-2003 by Fredrik Lundh
# Copyright (c) 2012 by Brian Crowell
#
# See the README file for information on usage and redistribution.
#
if bytes is str:
def i8(c):
... | havard024/prego | venv/lib/python2.7/site-packages/PIL/_binary.py | Python | mit | 1,488 | [
"Brian"
] | 3b7cd83f613650f741d998ab9f389d5d2ea27d0e977268d42ff01091ec6b448f |
# coding: utf-8
"""
Vericred API
Vericred's API allows you to search for Health Plans that a specific doctor
accepts.
## Getting Started
Visit our [Developer Portal](https://developers.vericred.com) to
create an account.
Once you have created an account, you can create one Application for
Production and an... | vericred/vericred-python | test/test_carrier_subsidiary.py | Python | apache-2.0 | 10,045 | [
"VisIt"
] | d5fe240b400f07de8909d8e7c09ffc37bee58845269acd233ba9ad5f43da51c6 |
# ----------------------------------------------------------------------
# LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
# http://lammps.sandia.gov, Sandia National Laboratories
# Steve Plimpton, sjplimp@sandia.gov
#
# Copyright (2003) Sandia Corporation. Under the terms of Contract
# DE... | rbberger/lammps | python/lammps/mliap/loader.py | Python | gpl-2.0 | 2,290 | [
"LAMMPS"
] | 7c91b51f1ae1609e503250f69ca0f96883fa53d8017df09b2c27adce08f29280 |
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