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"""
This class brings together a L{solve.Solver} to choose a set of implmentations, a
L{fetch.Fetcher} to download additional components, and the user's configuration
settings.
@since: 0.53
"""
# Copyright (C) 2011, Thomas Leonard
# See the README file for details, or visit http://0install.net.
from zeroinstall impor... | michel-slm/0install | zeroinstall/injector/driver.py | Python | lgpl-2.1 | 6,862 | [
"VisIt"
] | 80f78c3c6ed81d11e7c1aae2fd5d81b63c8dc2b5c98c5d36374a5158e76f2748 |
"""
Acceptance tests for Studio's Settings Details pages
"""
from unittest import skip
from acceptance.tests.studio.base_studio_test import StudioCourseTest
from ...fixtures.course import CourseFixture
from ...pages.studio.settings import SettingsPage
from ...pages.studio.overview import CourseOutlinePage
from ...test... | mtlchun/edx | common/test/acceptance/tests/studio/test_studio_settings_details.py | Python | agpl-3.0 | 6,290 | [
"VisIt"
] | 7eb2220d9bfbf71b25c35d933c779f6cf8bf9a43c38262b198bf8e7a97327074 |
__author__ = 'Alexendar Perez'
#####################
# #
# Introduction #
# #
#####################
"""compute specificity score, Hamming, and Levinstein distance neighborhoods for strings"""
#################
# #
# Libraries #
# #
############... | lzamparo/crisprML | src/specificity_score_distance_neighbors.py | Python | bsd-3-clause | 16,743 | [
"Biopython"
] | c0a5dc374bc873a2e3ef4eef6c84f5971bcaabf94d3070620f4a3ecfe7e5900a |
#!/usr/bin/env python
#
# $Id: check_pep8.py 9319 2011-06-10 02:59:43Z nathan_george $
#
# Proprietary and confidential.
# Copyright $Date:: 2011#$ Perfect Search Corporation.
# All rights reserved.
#
import sys
import os
import subprocess
buildscriptDir = os.path.dirname(__file__)
buildscriptDir = os.path.abspath(os.... | perfectsearch/sandman | code/buildscripts/codescan/check_pep8.py | Python | mit | 6,192 | [
"VisIt"
] | ae70ef269a3cb1c2b2025b558bee8b9c8d76446a90cf8bb38068738f8ea48b2b |
#!/usr/bin/python2
# Copyright (C) 2016 Sixten Bergman
# License WTFPL
#
# This program is free software. It comes without any warranty, to the extent
# permitted by applicable law.
# You can redistribute it and/or modify it under the terms of the Do What The
# Fuck You Want To Public License, Version 2, as... | MaximeLapointeMajor/QuantumDot-AutomatedTuning | peakdetect.py | Python | mit | 36,606 | [
"TINKER"
] | 35e37e2c223b7eb27977f104a797fb6f342b8f4d462a3f3b25fa4f67bcb8ccbf |
#!/usr/bin/python
"""
Copyright 2017 Paul Willworth <ioscode@gmail.com>
This file is part of Galaxy Harvester.
Galaxy Harvester is free software: you can redistribute it and/or modify
it under the terms of the GNU Affero General Public License as published by
the Free Software Foundation, either version 3 of th... | druss316/G-Harvestor | html/markUnavailable.py | Python | gpl-3.0 | 4,077 | [
"Galaxy"
] | bad0526762ee3f58d126729f226858d828104ab55febd1f6ef8d952b88d409da |
#!/usr/bin/env python
import numpy
sourceFileList = ['PyWindProfile/PyWindProfile.cpp',\
'../Gaussian.cpp',\
'../Utilities.cpp',\
'../OpticalDepth.cpp',\
'../Porosity.cpp',\
'../AnalyticOpticalDepth.cpp',\
'../SmoothA1.cpp',\
... | mauriceleutenegger/windprofile | PyWindProfile/setup.py | Python | gpl-2.0 | 1,996 | [
"Gaussian"
] | ebb309b921504806f577c24693cab5666cd28cb45d269fdaff9b55c67716c6f9 |
# Copyright 2016 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | rabipanda/tensorflow | tensorflow/contrib/py2tf/converters/decorators.py | Python | apache-2.0 | 2,071 | [
"VisIt"
] | eabe9e56b90d0bdda2c5ee3e4d32f1abcfbe5b82ea2689a9226f422ba088175b |
# -*- coding: utf-8 -*-
# @Author: Zachary Priddy
# @Date: 2016-05-03 08:06:32
# @Last Modified by: Zachary Priddy
# @Last Modified time: 2016-06-26 16:21:46
import logging
from core.models.command import Command as ffCommand
from core.models.device import Device
from core.models.event import Event as ffEvent
from... | zpriddy/Firefly | Firefly/devices/ffEcobee/ffEcobee.py | Python | apache-2.0 | 5,833 | [
"Firefly"
] | e2165da6365118916c5ef184bcf0861f3fa9ab5ab6da509bfe86a3d1570e451c |
from parsimonious.grammar import Grammar
from parsimonious.nodes import NodeVisitor
class EntryParser(NodeVisitor):
def __init__(self, grammar, text):
self.entry = {}
ast = Grammar(grammar).parse(text)
self.visit(ast)
def visit_name(self, n, vc):
self.entry['name'] = ... | codeyash/plugins | PyPlugins/PhpParser/py/csv.py | Python | apache-2.0 | 797 | [
"VisIt"
] | e94ab3c5b2b35a85d31ed3172728ed5129eb745d35431afb9dca46140380db68 |
# Copyright (c) 2003-2014 LOGILAB S.A. (Paris, FRANCE).
# http://www.logilab.fr/ -- mailto:contact@logilab.fr
#
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, o... | si618/pi-time | node_modules/grunt-pylint/tasks/lib/pylint/utils.py | Python | gpl-3.0 | 43,689 | [
"VisIt"
] | 239c5cb806f582e1e1b3b672c83d3cf61b93065a1b2072d36c40c874a408f9d3 |
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RYarn(RPackage):
"""YARN: Robust Multi-Condition RNA-Seq Preprocessing and Normalization.
... | iulian787/spack | var/spack/repos/builtin/packages/r-yarn/package.py | Python | lgpl-2.1 | 1,808 | [
"Bioconductor"
] | 89f9170ac30e081c4515c0adac91266545611e5228b072dd8b5e606135f752d8 |
from django.db import models
from edc_metadata_rules import MetadataRuleEvaluator
from ...constants import KEYED, REQUISITION, CRF
from ...metadata import Metadata, Destroyer, DeleteMetadataError
from ...metadata import RequisitionMetadataGetter, CrfMetadataGetter
class CreatesMetadataModelMixin(models.Model):
"... | botswana-harvard/edc-meta-data | edc_metadata/model_mixins/creates/creates_metadata_model_mixin.py | Python | gpl-2.0 | 2,465 | [
"VisIt"
] | 77e306002546a4df8c3770eeb565645dc4dc0ae845e43a3538d508a8311a0809 |
#!/usr/bin/env python
"""PokerNet simulation suite"""
from __future__ import print_function
from train import run_simulation, get_parser
# Initialize args with program defaults
INIT_ARGS = vars(get_parser().parse_args())
def table_one():
"""Table 1: Training results for different neuron numbers"""
simulat... | huntrar/PokerNet | simulation_suite.py | Python | mit | 6,558 | [
"NEURON"
] | 3a4739bdbf84e32fa65cc5af4c664e98bce08bfb9037b93422830a71c7b24605 |
from compiler import ast
# XXX should probably rename ASTVisitor to ASTWalker
# XXX can it be made even more generic?
class ASTVisitor:
"""Performs a depth-first walk of the AST
The ASTVisitor will walk the AST, performing either a preorder or
postorder traversal depending on which method is cal... | nmercier/linux-cross-gcc | win32/bin/Lib/compiler/visitor.py | Python | bsd-3-clause | 4,009 | [
"VisIt"
] | 34d7f8b5c8ba7e83fe3b3c4bdf93abd5b7735230ee1d759edd439ce44f6db77f |
# ________________________________________________________________________
#
# Copyright (C) 2020 Andrew Fullford
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apa... | akfullfo/tools | ercotsum/__init__.py | Python | apache-2.0 | 13,217 | [
"Octopus"
] | ea84c4e1bfae03728620d1c07df336dd56c38140a9b3c2b9e559be0fcb64de35 |
from django.conf import settings
from django.shortcuts import render_to_response, get_object_or_404
from django.http import Http404
from django.http import HttpResponseRedirect, HttpResponseForbidden, Http404, HttpResponse
from django.db.models import Q
from django.contrib.auth import authenticate
from django.contrib... | thehub/hubplus | apps/plus_wiki/views.py | Python | gpl-3.0 | 11,996 | [
"VisIt"
] | f27b05937ce5a19fca0479be69f88d5630ab71aa1ccd2041909507493b20f9dc |
#!/usr/bin/env python
"""
================================================
ABElectronics IO Pi 32-Channel Port Expander
Requires smbus2 or python smbus to be installed
================================================
Each MCP23017 chip is split into two 8-bit ports. Port 0 controls
pins 1 to 8 while Port 1 contro... | abelectronicsuk/abelectronics-home-assistant-custom-components | abelectronicsiopi/custom_components/abelectronicsiopi/IOPi.py | Python | mit | 30,408 | [
"TINKER"
] | eaadde9ea1d6857798bcd7a78d3796902a0dc22abaeaea0b02ec1dd74b46e9d1 |
## INFO ########################################################################
## ##
## COUBLET ##
## ======= ... | petervaro/coublet | models/api.py | Python | mit | 7,249 | [
"VisIt"
] | 9f1c572a3864735cc2ab8b20f5164c193d9c4cf26d5a3bd5252fb836dfa87f7c |
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
OpenBabel interface module, which opens up access to the hundreds of file
formats supported by OpenBabel. Requires openbabel with python bindings to be
installed. Please consult the
`openbabel documentation <http://openbab... | vorwerkc/pymatgen | pymatgen/io/babel.py | Python | mit | 13,371 | [
"Open Babel",
"Pybel",
"pymatgen"
] | 770c53a64b23eeac9253d16f1aa476508161412f40c62317da0c6dbaafb40ff2 |
#!/usr/bin/env python
"""
Script/functions for generating the SAGA master host list.
(Initially written by Erik Tollerud, but you should always trust git commit logs
over whatever you find in a comment at the top of the file!)
Directions for use
------------------
Assuming you have git installed, here's the way to... | saga-survey/saga-code | masterlist/masterlist.py | Python | gpl-2.0 | 40,961 | [
"Galaxy"
] | 0cd014da3892357e1d63e58abf711aad7c644af437196f18a374018a7470356c |
#!/usr/bin/python
# -*- coding: utf-8 -*-
"""Test suit for the CP2K ASE calulator.
http://www.cp2k.org
Author: Ole Schuett <ole.schuett@mat.ethz.ch>
"""
from __future__ import division, print_function
import os
from ase.test import NotAvailable
from ase.structure import molecule
from ase.calculators.cp2k import CP2... | misdoro/python-ase | ase/test/cp2k/cp2k_H2_LS.py | Python | gpl-2.0 | 924 | [
"ASE",
"CP2K"
] | 69dab6817e7e6c0824d602a408219ca13f5ec56518b5812eca29ace574d0affa |
import numpy as np
import scipy
def gaussian(height, center_x, center_y, width_x, width_y, rotation):
"""Returns a gaussian function with the given parameters"""
width_x = float(width_x)
width_y = float(width_y)
rotation = np.deg2rad(rotation)
center_x = center_x * np.cos(rotation) - center_y * np... | woshialex/diagnose-heart | CNN_A/gaussian2d.py | Python | mit | 2,304 | [
"Gaussian"
] | dd7572464d3118df207dabb6c7ff77e3c98dd664265ba527c951005c4cfe4fc8 |
# -*- coding: utf-8 -*-
"""
Unit tests for instructor.api methods.
"""
import datetime
import functools
import io
import json
import random
import shutil
import tempfile
import ddt
import pytest
import six
from boto.exception import BotoServerError
from django.conf import settings
from django.contrib.auth.models imp... | mitocw/edx-platform | lms/djangoapps/instructor/tests/test_api.py | Python | agpl-3.0 | 237,194 | [
"VisIt"
] | 1db81e91dbba445e7e26227d866b7868ca8c3d44df952b79ae81e03d1e589166 |
#!/usr/bin/env python
import argparse
import os
import sqlite3
from Bio import SeqIO, SeqRecord, Seq
from Bio.Align.Applications import ClustalwCommandline
from Bio.Blast import NCBIXML
from Bio.Blast.Applications import NcbiblastnCommandline as bn
from Bio import AlignIO
AT_DB_FILE = 'AT.db'
BLAST_EXE = '~/opt/ncbi... | Serulab/Py4Bio | code/ch20/estimateintrons.py | Python | mit | 4,302 | [
"BLAST"
] | abcd497d5aa58559b7090c80df7e5a8f9cc9222aaad49d8ebd0ab9011b989a3b |
# -*- coding: utf-8 -*-
# Copyright 2020 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law o... | googleapis/python-vision | scripts/fixup_vision_v1p4beta1_keywords.py | Python | apache-2.0 | 7,202 | [
"VisIt"
] | dd2b6baf80ce2d55f9c58089db3fe46fd39125d501a4941112b44ba8f9623565 |
from math import radians, sin, cos
from ase import Atom, Atoms
from ase.neb import NEB
from ase.constraints import FixAtoms
from ase.calculators.nwchem import NWChem
from ase.optimize import QuasiNewton, BFGS
from ase.visualize import view
# http://jcp.aip.org/resource/1/jcpsa6/v97/i10/p7507_s1
doo = 2.74
doht = 0.95... | suttond/MODOI | ase/test/nwchem/nwchem_h3o2m.py | Python | lgpl-3.0 | 1,993 | [
"ASE",
"NWChem"
] | c0295d171bf19632502592264550b09e14f7bd0b21548bcb3b4e53324de10f56 |
# Copyright (c) 2013-2015, Rethink Robotics
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
#
# 1. Redistributions of source code must retain the above copyright notice,
# this list of conditio... | UCRoboticsLab/BaxterTictactoe | src/baxter_interface/src/baxter_interface/robot_enable.py | Python | apache-2.0 | 8,357 | [
"VisIt"
] | 4b8e888a334c1639cf53d26196cfbb16e4e6a4454e862ea1d19a1fa7820dfcac |
import numpy as np
import netCDF4 as ncd
FILL_VALUE = None
def new(filename):
'''
Return the netcdf4-python rootgroup for a new netcdf file
for writing.
'''
return ncd.Dataset(filename, 'w', clobber=False)
def add_coordinates(nc, dict_of_dims):
'''
Create dimensions in netcdf file nc.
... | ocefpaf/paegan | paegan/cdm/writer.py | Python | gpl-3.0 | 1,983 | [
"NetCDF"
] | fd4cb87b62f5e31e98a00b073cdfd724db026b639fd377a18d6c3aff1b16d6cd |
# -*- coding: utf-8 -*-
# This file is part of Invenio.
# Copyright (C) 2006, 2007, 2008, 2009, 2010, 2011, 2012, 2013, 2014, 2015 CERN.
#
# Invenio is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public License as
# published by the Free Software Foundation; either versi... | zenodo/invenio | invenio/legacy/websearch/webcoll.py | Python | gpl-2.0 | 56,283 | [
"VisIt"
] | 780a557433535f9bae20d4e379566e75533f5bab2325019d071eecb04cdeccab |
# coding: utf-8
from __future__ import unicode_literals, division
"""
This module implements basic kinds of jobs for VASP runs.
"""
import subprocess
import os
import shutil
import math
import logging
import numpy as np
from pymatgen.io.vasp import VaspInput, Incar, Poscar, Outcar, Kpoints
from monty.os.path import... | davidwaroquiers/custodian | custodian/vasp/jobs.py | Python | mit | 16,637 | [
"VASP",
"pymatgen"
] | 075ab48e716c6f069f03c176556c4e92e4c239f58cfe9fdde6c93220906e0880 |
# Module for the BNL image processing project
# Developed at the NSLS-II, Brookhaven National Laboratory
# Developed by Gabriel Iltis, Sept. 2014
"""
This module contains test functions for the file-IO functions
for reading and writing data sets using the netCDF file format.
The files read and written using this funct... | tacaswell/scikit-beam | skbeam/core/tests/test_arithmetic.py | Python | bsd-3-clause | 3,860 | [
"NetCDF"
] | dc71600a7642313bd7aef819ac413a8b6ce15272226494696632a0599ac92572 |
#!/usr/bin/env python
import vtk
from vtk.test import Testing
from vtk.util.misc import vtkGetDataRoot
VTK_DATA_ROOT = vtkGetDataRoot()
import sys
class TestClip(Testing.vtkTest):
def testImage2DScalar(self):
planes = ['XY', 'XZ', 'YZ']
expectedNCells = [38, 46, 42]
expectedNClip... | hlzz/dotfiles | graphics/VTK-7.0.0/Filters/General/Testing/Python/tableBasedClip.py | Python | bsd-3-clause | 6,954 | [
"VTK"
] | 2157a2d299d4dedeaaffcfee55eca55bd4e39a7dacce83d1bd88a17594585c7b |
# Licensed under a 3-clause BSD style license - see LICENSE.rst
import copy
import time
import math
from collections import OrderedDict
import warnings
import numpy as np
from scipy.interpolate import InterpolatedUnivariateSpline as Spline1d
from .photdata import photometric_data, select_data
from .utils import Resu... | dannygoldstein/sncosmo | sncosmo/fitting.py | Python | bsd-3-clause | 48,630 | [
"Gaussian"
] | d43a0dec42fa7da8882bedfcc5f45d855f31cfe06d6c89738842334c4e8e5e90 |
# pylint: disable=I0011, C0111, C0302, too-few-public-methods, no-self-use, too-many-public-methods, invalid-name, unused-argument
from parsimonious_ext.expression_nodes import ALTERNATION, OPTIONAL, LITERAL, REGEX
from parsimonious.nodes import NodeVisitor
def camxes_node(node, visited_children, name=None):
no... | teleological/camxes-py | transformers/camxes_json.py | Python | mit | 60,298 | [
"VisIt"
] | 932242b339a6fa08adc7418de21678d0bfd05b93b3d78c7f6044552987559ab8 |
# -*- coding: utf-8 -*-
"""
End-to-end tests for the main LMS Dashboard (aka, Student Dashboard).
"""
import datetime
from nose.plugins.attrib import attr
from common.test.acceptance.tests.helpers import UniqueCourseTest, generate_course_key
from common.test.acceptance.fixtures.course import CourseFixture
from common.... | louyihua/edx-platform | common/test/acceptance/tests/lms/test_lms_dashboard.py | Python | agpl-3.0 | 12,909 | [
"VisIt"
] | c534f10ee92814a97169cf96320dd93cdad841015037f38dc33c77271dfba0cb |
import openvoronoi as ovd
import ovdvtk
import time
import vtk
import datetime
import math
import random
import os
import sys
import pickle
import gzip
import truetypetracer as ttt
def drawCircle(myscreen, c, r, circlecolor):
ca = ovdvtk.Circle(center=(c.x, c.y, 0), radius=r, color=circlecolor, resolution=50)
... | aewallin/openvoronoi | python_examples/ma-pocket/ma_pocket_03_ttt.py | Python | lgpl-2.1 | 7,514 | [
"VTK"
] | a99223358c4d7042fdde428983a5d0d53c3b9186ffab69a664d95617ea7ec83c |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.conf import settings
from django.conf.urls import include, url
from django.conf.urls.static import static
from django.contrib import admin
from django.views.generic import TemplateView
urlpatterns = [
url(r'^$', TemplateView.as_view(templ... | willingc/mydash | config/urls.py | Python | bsd-3-clause | 1,228 | [
"VisIt"
] | 79c76e3d80840881dd15fc3f26e95389455a94aa0f841669a7d98b5b291ac1c4 |
""" bpz_tools.py: Contains useful functions for I/O and math.
TO DO:
Include higher order interpolations
"""
from __future__ import print_function
from __future__ import division
#from Numeric import *
from builtins import map
from builtins import str
from builtins import input
from builtins import range
fro... | boada/planckClusters | MOSAICpipe/bpz-1.99.3/bpz_tools.py | Python | mit | 56,945 | [
"Galaxy"
] | 717c54a3604fc2666daf7ea37211b5d96940bc3d3933c3368bdc765e6ac9c411 |
#!/usr/bin/env python
# coding=UTF-8
from cgi import escape
import errno
import sys
import os
import re
import random
import datetime
import itertools
import time
import traceback
import dateutil.parser as dateparser
from tempfile import NamedTemporaryFile
from optparse import OptionParser
from common import tidy_stri... | spudmind/parlparse | pyscraper/sp/parse-official-reports-new.py | Python | agpl-3.0 | 36,571 | [
"Brian"
] | 77f1e494a36df4af48bb6e43418819a29c8c2645554d302355ea824d2aa8d3e5 |
"""
Test the Studio help links.
"""
from flaky import flaky
from bok_choy.web_app_test import WebAppTest
from unittest import skip
from common.test.acceptance.fixtures.course import XBlockFixtureDesc
from common.test.acceptance.tests.studio.base_studio_test import StudioCourseTest, ContainerBase
from common.test.acce... | tanmaykm/edx-platform | common/test/acceptance/tests/studio/test_studio_help.py | Python | agpl-3.0 | 48,787 | [
"VisIt"
] | 2719a8b473752764e226d4eecd7948e9c21e5a1d914dac7ece314ed812c361e8 |
import requests
from flask import redirect, url_for, request, g, Config
from flask_oauthlib.client import OAuth
from flask.ext.login import LoginManager, login_required, \
login_user, logout_user
from matchmaker import app
from models import User, BotIdentity
# Wire everything up
login_manager = LoginManager()
l... | gnmerritt/casino | matchmaker/login.py | Python | mit | 2,601 | [
"CASINO"
] | 1a896ec8cc2e78b30fc596da63ac3d062be46961bd750c1817310c48855185f0 |
"""
An full-blown application demoing a domain-specific usecase with Mayavi:
interactive design of coils.
This is example of electromagnetic coils design, an application is built to
enable a user to interactively position current loops while visualizing the
resulting magnetic field. For this purpose, it is best to use... | dmsurti/mayavi | examples/mayavi/interactive/coil_design_application.py | Python | bsd-3-clause | 10,851 | [
"Mayavi",
"VTK"
] | 956343ba6fbad5d45c3f39c6f1cb8847dc9b9b658fe635419dbe8b85b83616ca |
import numpy as np
from openpnm.io import GenericIO
from openpnm.utils import logging
logger = logging.getLogger(__name__)
class Salome(GenericIO):
r"""
Writes a Salome .py script to generate a geometry.
The exported .py file should be loaded from Salome with "load script".
Notes
-----
Visit... | PMEAL/OpenPNM | openpnm/io/_salome.py | Python | mit | 5,482 | [
"VisIt"
] | e7a5b3a1035708a7afd3d2b0149d606b638266c3075d817ff1972a28e9e10b98 |
#!/usr/bin/env python
"""
This script is used to map fastq files to the genome. The input is a comma
separated list of fastq[.gz] files (or two lists if the input is paired-end).
The output are bam files with the mapped reads, a table containing the number
of reads mapped to each gene and a wiggle file with the covera... | asafpr/RILseq | bin/map_single_fragments.py | Python | mit | 6,490 | [
"BWA",
"pysam"
] | dc42f87982262eebe19882a343163f718ad879f42fe3e1fc3de1763883433db9 |
"""
@name: PyHouse/src/Modules.Core.Utilities.uuid_tools.py
@author: D. Brian Kimmel
@contact: D.BrianKimmel@gmail.com
@copyright: (c) 2015-2019 by D. Brian Kimmel
@license: MIT License
@note: Created on Jun 22, 2015
@Summary:
"""
__updated__ = '2019-10-24'
# Import system type stuff
import os
impo... | DBrianKimmel/PyHouse | Project/src/Modules/Core/Utilities/uuid_tools.py | Python | mit | 2,322 | [
"Brian"
] | 68c9ec324e3adbe077292a0e3b6837dc6ddfe562dff483adc012b3f71a8e346e |
"""
NH3 fitter wrapper
==================
Wrapper to fit ammonia spectra. Generates a reasonable guess at the position
and velocity using a gaussian fit
Example use:
.. code:: python
import pyspeckit
sp11 = pyspeckit.Spectrum('spec.nh3_11.dat', errorcol=999)
sp22 = pyspeckit.Spectrum('spec.nh3_22.dat',... | bsipocz/pyspeckit | pyspeckit/wrappers/fitnh3.py | Python | mit | 10,023 | [
"Gaussian"
] | d8bb748c1e4ecf703af35e73b1bda9610e9e8f68f8c74e60c16bb92732dceac1 |
#!/usr/bin/env python
#
# Restriction Analysis Libraries.
# Copyright (C) 2004. Frederic Sohm.
#
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
#
r"""Print the results of restriction enzyme... | Ambuj-UF/ConCat-1.0 | src/Utils/Bio/Restriction/PrintFormat.py | Python | gpl-2.0 | 14,068 | [
"Biopython"
] | dbd4dd5eba0419898cb313272404bd995f8986dc446f3ccbdb3d82053b1bbbbd |
"""Module level filter."""
from DIRAC.FrameworkSystem.private.standardLogging.LogLevels import LogLevels
DOT = "."
LEVEL = "__level__"
class ModuleFilter(object):
"""Filter module to set loglevel per module.
::
Resources
{
LogBackends
{
<backend>
{
... | DIRACGrid/DIRAC | src/DIRAC/Resources/LogFilters/ModuleFilter.py | Python | gpl-3.0 | 3,161 | [
"DIRAC"
] | bc9ff1dc68c9872913ef1a5d9a39c181d192dd2d0a68c80a19865c754ae2cb7d |
#!/usr/bin/env python
#
# Author: Qiming Sun <osirpt.sun@gmail.com>
#
'''
X2c method use the uncontracted large component basis to construct the X
matrix. The basis for X matrix can have a big impact to the total energy.
X2c treatment is not variational. The total energy often increases when the
quality of large compo... | gkc1000/pyscf | examples/x2c/02-basis_for_x.py | Python | apache-2.0 | 1,764 | [
"PySCF"
] | f1cba36965f70bfd81aa2c94a9dcb37637d7df62f810b62b3be35d6fc54dde8c |
#!/usr/bin/env python
# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #
# Filename: pounce.py #
# Authors: Brian Tomlinson <darthlukan@gmail.com> #
# URL: git@github.com:darthlukan/pounce.git #
# Description: A s... | darthlukan/pounce | pounce/pounce.py | Python | gpl-2.0 | 6,747 | [
"Brian"
] | a392517a7e0c5a5155b02f1c6cc4f649782ed6704daee0477c616ef16e96c195 |
import unittest
from eachday import db
from eachday.models import User, Entry
from eachday.tests.base import BaseTestCase
from datetime import date, timedelta
import json
class TestEntryResource(BaseTestCase):
def setUp(self):
super(TestEntryResource, self).setUp()
user = User(
email... | bcongdon/EachDay | eachday/tests/test_entry_resource.py | Python | mit | 12,599 | [
"MOE"
] | b3437b738404208e4c33cfec345c773e7e97b72aafe21683581cdd638381f74b |
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
import os
import unittest
from monty.serialization import loadfn
from pymatgen.core.lattice import Lattice
from pymatgen.core.structure import Structure
from pymatgen.symmetry.analyzer import SpacegroupAnalyzer
from pymatge... | vorwerkc/pymatgen | pymatgen/symmetry/tests/test_kpaths.py | Python | mit | 2,580 | [
"pymatgen"
] | 07ab234615cd8133e9bf23213bf8bf82dcc40265a13927ab312c84f592212403 |
"""
De Sitter spacetime dimension and curvature estimator
"""
# Copyright (C) 2016 by
# James Clough <james.clough91@gmail.com>
# All rights reserved.
# BSD license.
__author__ = "\n".join(["James Clough (james.clough91@gmail.com)"])
__all__ = ['de_sitter_param_estimate']
import math
import networkx as ... | JamesClough/dagology | dagology/algorithms/de_sitter_dimension.py | Python | mit | 4,691 | [
"Gaussian"
] | 9d4c0756eefa9a2199015f71d337725958a6bbf979c43a4079d4083545c36173 |
#!/usr/bin/python
"""
Copyright 2010 Paul Willworth <ioscode@gmail.com>
This file is part of Galaxy Harvester.
Galaxy Harvester is free software: you can redistribute it and/or modify
it under the terms of the GNU Affero General Public License as published by
the Free Software Foundation, either version 3 of th... | clreinki/GalaxyHarvester | getResourceByName.py | Python | agpl-3.0 | 4,352 | [
"Galaxy"
] | 0074e18dac71834b7372d032abd96c7073183f14bbda075a87bbaae5ecf08242 |
from __future__ import division
import tensorflow as tf
import numpy as np
from utils import *
class EncDec:
"""
Encoder-Decoder Model (for single sequence future prediction problem)
Encoder could be arbitrarily complex
passes the final state through non-linearity to initlize decoder state... | wangkua1/sportvu | sportvu/model/encdec.py | Python | mit | 13,370 | [
"Gaussian"
] | 6ad8f58c358f3f8d0ca14586a2fe59eaba1151e746e8d473a7202a7afe5bf5ac |
# This script configurates BRCA-analyzer
import argparse,os
import subprocess as sp
thisDir=os.path.dirname(os.path.realpath(__file__))+'/'
par=argparse.ArgumentParser(description='This script configures BRCA-analyzer')
par.add_argument('--bwa','-bwa',dest='bwaDir',type=str,help='destination of BWA. If it can be sta... | aakechin/BRCA-analyzer | install.py | Python | gpl-3.0 | 2,506 | [
"BWA"
] | fe5ffa0369eda02d881fa5022f0e414a5441e2311981f6543d5c8ae6b9a092e3 |
# -*- coding: utf-8 -*-
#!/usr/bin/env python
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2000-2007 Donald N. Allingham
# Copyright (C) 2007 Johan Gonqvist <johan.gronqvist@gmail.com>
# Copyright (C) 2007-2009 Gary Burton <gary.burton@zen.co.uk>
# Copyright (C) 2007-2009 Stephane Charet... | Nick-Hall/gramps | gramps/plugins/webreport/repository.py | Python | gpl-2.0 | 12,590 | [
"Brian"
] | 7173c4ee7dc276cc95fe7469a7202222538604f5e2b8e751b6aa55a6145fa6c5 |
import os
def bluecfd(folder):
"""Environment variables fo blueCFD.
The variables are based on setvars.bat file for blueCFD source.
"""
bluecfd_env_base = {
'AddOns_ParaView_DIR': os.path.join(folder, r'AddOns\ParaView'),
'BLUECFDPATH': folder,
'USER': 'ofuser',
'USERN... | ladybug-analysis-tools/butterfly | butterfly/runmanagerenv.py | Python | gpl-3.0 | 4,806 | [
"ParaView"
] | d35e42b4d150a439fecf5b7de697da13b61a835555714ab3872782243b72c50c |
import os
from ase import Atom, Atoms
from gpaw import GPAW
from gpaw.test import equal
from gpaw.wannier import Wannier
import numpy as np
# GPAW wannier example for ethylene corresponding to the ASE Wannier
# tutorial.
a = 6.0 # Size of unit cell (Angstrom)
ethylene = Atoms([Atom('H', (-1.235,-0.936 , 0 )),
... | ajylee/gpaw-rtxs | gpaw/test/wannier_ethylene.py | Python | gpl-3.0 | 2,209 | [
"ASE",
"GPAW",
"NetCDF"
] | bc90cde68b2bc637342a675c2962d50d8fc71827a8edf71b0f6892f8449added |
# encoding: utf-8
import datetime
from south.db import db
from south.v2 import SchemaMigration
from django.db import models
class Migration(SchemaMigration):
def forwards(self, orm):
# Deleting field 'EphysPropSummary.num_nemds'
db.delete_column('neuroelectro_ephyspropsummary',... | lessc0de/neuroelectro_org | neuroelectro/south_migrations/0030_auto__del_field_ephyspropsummary_num_nemds__add_field_ephyspropsummary.py | Python | gpl-2.0 | 20,591 | [
"NEURON"
] | 069e781e5cb167a7ca56f3005663382b805ffaeeea57e94d308c8132021964ca |
import os
import csv
import numpy as np
from netCDF4 import Dataset
import logging
from datetime import datetime as dt
from typing import Union
from hyo2.abc.lib.ftp import Ftp
from hyo2.soundspeed.atlas.abstract import AbstractAtlas
from hyo2.soundspeed.profile.profile import Profile
from hyo2.soundspeed.profile.pro... | hydroffice/hyo_soundspeed | hyo2/soundspeed/atlas/woa13.py | Python | lgpl-2.1 | 17,462 | [
"NetCDF"
] | bdf7b8c0d192222e2a4f7fafd05879ef01ef35adcb453e0e0de4f9d334bbaa25 |
import warnings
from chempy.units import allclose
from ..water_permittivity_bradley_pitzer_1979 import water_permittivity
from chempy.util.testing import requires
from chempy.units import linspace, units_library, default_units as u
def test_water_permittivity():
warnings.filterwarnings("error")
abs(water_pe... | bjodah/aqchem | chempy/properties/tests/test_water_permittivity_bradley_pitzer_1979.py | Python | bsd-2-clause | 946 | [
"ChemPy"
] | d370e84a33a7fabdd11a4f0f8e8de29fdc4b9d28c5f24a9dfc3595696eb00ba2 |
import molgenis
session = molgenis.Session("https://molgenis56.target.rug.nl/api/")
dir(session)
session.get("ASE")
print(session.get("ASE", q=[{"field":"SNP_ID", "operator":"EQUALS", "value":"rs12460890"}]))
samples = session.get("SampleAse", q=[{"field":"SNP_ID", "operator":"EQUALS", "value":"rs12460890"}])
print(sa... | joerivandervelde/molgenis | molgenis-python/src/test/python/tutorial.py | Python | lgpl-3.0 | 746 | [
"ASE"
] | 77f0d042ce1f80160e4582878a593cc3dc307f6df5f83229c90c7c4fc4f8d550 |
# OpenMM-based potential energy term.
# It can be added to any other force field.
from MMTK.ForceFields.ForceField import ForceField, EnergyTerm
from MMTK import ParticleScalar, ParticleVector, SymmetricPairTensor
import simtk.openmm
import simtk.openmm.app as OpenMM_app
import numpy as np
try:
from Scientific._ve... | CCBatIIT/AlGDock | AlGDock/ForceFields/OpenMM/OpenMM.py | Python | mit | 4,918 | [
"OpenMM"
] | 59293c7d6f7f9b1aec5bf47d08ee5cdcdc03d9ed25b01042139d1d17abc234df |
#!/usr/bin/env python
# Copyright 2014-2020 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | gkc1000/pyscf | setup.py | Python | apache-2.0 | 22,020 | [
"Octopus",
"PySCF"
] | ad3de5dc1bac10a561f52fdb3b97c79b69a958b321147780a7b7b5f19b6b90d3 |
#!/usr/bin/env python
"""NetCDF Metadata module
Author: Alex Ip (alex.ip@ga.gov.au)
Written: 5/7/2016
"""
# TODO: Check potential issues with unicode vs str
import logging
import os
import re
import netCDF4
from shutil import copyfile
from _metadata import Metadata
logger = logging.getLogger('root.' + __name__)
... | alex-ip/geophys2netcdf | geophys2netcdf/metadata/_netcdf_metadata.py | Python | apache-2.0 | 3,838 | [
"NetCDF"
] | 68be231bdd68db46674baa69e74f46c3dd7e07950c90a46ac08d8dd71d3dab5f |
#############################################################################
# Code for managing and training a variational Iterative Refinement Model. #
#############################################################################
# basic python
import numpy as np
import numpy.random as npr
from collections import ... | Philip-Bachman/Sequential-Generation | TwoStageModel.py | Python | mit | 34,991 | [
"Gaussian"
] | 15c8211f1fda5ea093f47a21b72c02e35c5f40884cc4b421bfae56a0bfb773d9 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
Abinit Post Process Application
author: Martin Alexandre
last edited: May 2013
"""
#!/usr/bin/python
# -*- coding: utf-8 -*-
import sys,os,re
#gui
import button as Button
#Reading
import reading.read as Read
#Utility
import utility.analysis as Analysis
import utili... | jmbeuken/abinit | scripts/post_processing/appa/gui/elasticConstant.py | Python | gpl-3.0 | 10,744 | [
"ABINIT"
] | f3304ad94f5269708ceddbc17871bf4f32517f7ae0f0e1b3b510568714008b51 |
# -*- coding: utf-8 -*-
"""
sphinx_pypi_upload
~~~~~~~~~~~~~~~~~~
setuptools command for uploading Sphinx documentation to PyPI
:author: Jannis Leidel
:contact: jannis@leidel.info
:copyright: Copyright 2009, Jannis Leidel.
:license: BSD, see LICENSE for details.
"""
import os
import soc... | BrainIntensive/OnlineBrainIntensive | resources/HCP/pyxnat/sphinx_pypi_upload.py | Python | mit | 4,934 | [
"VisIt"
] | 3c086478082cc85bef3da0ce10e0df9b55140e56eb20077d4765dcabe1ef6a17 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
@package pyssw
@brief Python standalone program for ssw alignment using the C library
Complete-Striped-Smith-Waterman-Library
Biopython module is require for fastq/fastq parsing
@copyright [The MIT licence](http://opensource.org/licenses/MIT)
@author Adrien Leger ... | philres/nextgenmap-lr | lib/Complete-Striped-Smith-Waterman-Library/src/pyssw.py | Python | gpl-3.0 | 10,946 | [
"Biopython"
] | 037044eb71214224101d5cb62325f78c8a6a686d84c12f6ceb7298aa9e38734d |
"""
@name: PyHouse/src/Modules/Computer/Internet/_test/test_inet_find_external_ip.py
@author: D. Brian Kimmel
@contact: D.BrianKimmel@gmail.com>
@copyright: (c) 2014-2017 by D. Brian Kimmel
@license: MIT License
@note: Created on Jun 27, 2014
@Summary: Test finding an external IP address.
Passed all... | DBrianKimmel/PyHouse | Project/src/Modules/Computer/Internet/_test/test_inet_find_external_ip.py | Python | mit | 1,767 | [
"Brian"
] | 8a1ad272a36ccf214224771a2a6e4253aaa36bcff6c0a96213686b31b0216c23 |
# Copyright (c) 2011, Jimmy Cao All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
#
# Redistributions of source code must retain the above copyright notice, this
# list of conditions and the following... | billion57/lykos | src/wolfgame.py | Python | bsd-2-clause | 375,835 | [
"VisIt",
"exciting"
] | 0bfddbe571ab08c07ecf9612202239c76a08611bcd516bec4b86768895da9636 |
# Copyright 2001-2004 Brad Chapman.
# Revisions copyright 2009-2013 by Peter Cock.
# Copyright 2009 by Cymon J. Cox. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
# ... | mengqvist/DNApy | src/external/muscle_wrapper.py | Python | gpl-3.0 | 63,005 | [
"BLAST",
"Biopython"
] | 9e513a665cbf972135668d273c7b57018a07eb044fa982da541cab229eb1b9bf |
"""
.. See the NOTICE file distributed with this work for additional information
regarding copyright ownership.
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.... | Multiscale-Genomics/mg-process-fastq | tests/test_bwa_aligner.py | Python | apache-2.0 | 15,932 | [
"BWA"
] | 46d48334d13aba0278c249fa278f0e859d8cc61bd51c9cb0241a6750433ee948 |
from random import random
from lmfit.lineshapes import gaussian
import numpy as np
def format_num(x, max_len=10, pre=5, post=5):
if x > 10**pre or x < 10^-post:
x = '%.{}e'.format(post) % x
else:
x = '%{}.{}f'.format(pre, post) % x
return x
dataset = [gaussian(i) for i in np.linspace(-1... | sameera2004/bluesky | examples/number_formatter.py | Python | bsd-3-clause | 376 | [
"Gaussian"
] | eaf983cdee5ceb06ee064f6c97c454ae571ab80f5030fe2eedcd0e810e168540 |
''' Some drivers for ASE (atomic simulation environment) tools.
Some useful ASE routines:
- Atoms.get_all_distances(mic=True): Get distance table, respecting periodic boundary conditions.
'''
import ase
import numpy as np
def ase_from_crystal(crystaloutfn):
''' Create an ASE Atoms object by reading structure f... | bbusemeyer/mython | busempyer/ase_tools.py | Python | gpl-2.0 | 2,353 | [
"ASE",
"CRYSTAL"
] | 528360a3d5c438e8f02d6cb0200d6d6ae30bd83385305b44e784a756ca976be8 |
#! /usr/bin/env python
"""
Module with detection algorithms.
"""
__author__ = 'Carlos Alberto Gomez Gonzalez, Valentin Christiaens'
__all__ = ['detection',
'mask_source_centers',
'mask_sources',
'peak_coordinates']
import numpy as np
import pandas as pn
from hciplot import plot_frame... | carlgogo/vip_exoplanets | vip_hci/metrics/detection.py | Python | bsd-3-clause | 22,340 | [
"Gaussian"
] | 61d192c1f53622720612cfd832ceef4e40f5dc692ccb967fc3e7cb3001564cb7 |
#!/usr/bin/env python
# ----------------------------------------------------------------------------
# Copyright (c) 2013--, scikit-bio development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# ---------------------... | JWDebelius/scikit-bio | skbio/tree/tests/test_tree.py | Python | bsd-3-clause | 48,779 | [
"scikit-bio"
] | a8601b380e684bfab5630c41fb40495e61d1c231f6b1894c491f5573bc40f0b9 |
# freeseer - vga/presentation capture software
#
# Copyright (C) 2011, 2013 Free and Open Source Software Learning Centre
# http://fosslc.org
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundati... | Freeseer/freeseer | src/freeseer/plugins/output/rtmp_streaming/__init__.py | Python | gpl-3.0 | 31,198 | [
"VisIt"
] | 7340015fe17b2911ff40d3e3c4a187949612bcd6ce1b3ee339462d9f599029be |
#!/usr/bin/env python
import sys
import subprocess
from math import floor, ceil, log10
import numpy
try:
from pyx import *
except:
pass
from ..hic import HiC
from ..plotting import plot_compact_array, plot_upper_array, plot_diagonal_from_compact_array
from ..plotting import plot_full_array, plot_diagonal_fro... | bxlab/hifive | hifive/commands/get_hic_interval.py | Python | mit | 16,859 | [
"Galaxy"
] | 63d673a413c4b2dd8181e955be9cdf10378c852010b108c56aaa58ab86ec172e |
##############################################################################
# MDTraj: A Python Library for Loading, Saving, and Manipulating
# Molecular Dynamics Trajectories.
# Copyright 2012-2013 Stanford University and the Authors
#
# Authors: Robert McGibbon
# Contributors:
#
# MDTraj is free software: y... | casawa/mdtraj | mdtraj/utils/validation.py | Python | lgpl-2.1 | 8,147 | [
"MDTraj"
] | 18a226b4c84ebe38b2e2d05b15fc82617a755b2072b1662ca7a119efae2ef6ea |
"""
"""
import warnings
import os
import sys
import posixpath
import fnmatch
import py
# Moved from local.py.
iswin32 = sys.platform == "win32" or (getattr(os, '_name', False) == 'nt')
try:
# FileNotFoundError might happen in py34, and is not available with py27.
import_errors = (ImportError, FileNotFoundErro... | pytest-dev/py | py/_path/common.py | Python | mit | 14,818 | [
"VisIt"
] | 102d7c3e5eb360618ccc790380635b2c2d96db76a3b43c073093a6de334c74e0 |
#!/usr/bin/python
#
# @author: Gaurav Rastogi (grastogi@avinetworks.com)
# Eric Anderson (eanderson@avinetworks.com)
# module_check: supported
# Avi Version: 17.1.1
#
# Copyright: (c) 2017 Gaurav Rastogi, <grastogi@avinetworks.com>
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses... | hryamzik/ansible | lib/ansible/modules/network/avi/avi_applicationpersistenceprofile.py | Python | gpl-3.0 | 6,700 | [
"VisIt"
] | 820e3c0ae0b48a2a7fc7430ddb2fba4132a6dce9cca29e50f47036ca192c2d74 |
"""
Python wrapper for Google web APIs
This module allows you to access Google's web APIs through SOAP,
to do things like search Google and get the results programmatically.
Described U{here <http://www.google.com/apis/>}
You need a Google-provided license key to use these services.
Follow the link above to... | gdestuynder/Stupid-python-bot | modules/google.py | Python | gpl-3.0 | 21,716 | [
"Brian",
"VisIt"
] | ad507c2d9b7c837e37981a149352af0f33b4b49c22a6261f0973cc6eea818161 |
# Orca
#
# Copyright 2010 Informal Informatica LTDA.
# Author: Jose Vilmar <vilmar@informal.com.br>
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, ... | Alberto-Beralix/Beralix | i386-squashfs-root/usr/share/pyshared/orca/notification_messages.py | Python | gpl-3.0 | 8,333 | [
"ORCA"
] | 4f48fbb6a934287ebaea76794ed8de57aa68d8baef19f9485f8994faad5a362b |
# This file is part of Merlin/Arthur.
# Merlin/Arthur is the Copyright (C)2009,2010 of Elliot Rosemarine.
# Individual portions may be copyright by individual contributors, and
# are included in this collective work with permission of the copyright
# owners.
# This program is free software; you can redistribute it an... | ellonweb/merlin | Arthur/views/search.py | Python | gpl-2.0 | 13,585 | [
"Galaxy"
] | 5c336ad1a77be33c73929c76c665cb545b8c1cc6e2a31e895954b76c15b66286 |
"""
This module contain solvers for all kinds of equations:
- algebraic or transcendental, use solve()
- recurrence, use rsolve()
- differential, use dsolve()
- nonlinear (numerically), use nsolve()
(you will need a good starting point)
"""
from __future__ import print_function, division
f... | sunny94/temp | sympy/solvers/solvers.py | Python | bsd-3-clause | 105,817 | [
"Gaussian"
] | 9c481625e608326e52208b9002d0b6686f6a57dc8069f5117a6666090200ca66 |
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.db import models, migrations
class Migration(migrations.Migration):
dependencies = [
('visit', '0050_auto_20150810_2027'),
]
operations = [
migrations.AlterField(
model_name='staff',
name... | koebbe/homeworks | visit/migrations/0051_auto_20150810_2033.py | Python | mit | 591 | [
"VisIt"
] | c2833cd21da0a3c7393e3cb44dd3f2fa7676d95a9c0d09b1c3a15cfad35eb565 |
"""
This is only meant to add docs to objects defined in C-extension modules.
The purpose is to allow easier editing of the docstrings without
requiring a re-compile.
NOTE: Many of the methods of ndarray have corresponding functions.
If you update these docstrings, please keep also the ones in
core/fromnum... | mbayon/TFG-MachineLearning | venv/lib/python3.6/site-packages/numpy/add_newdocs.py | Python | mit | 228,205 | [
"Brian"
] | f0f89f56535d7a40ceea457786f8e6d846d14e9f5cb1baa9be4afadc5f3cf4e1 |
"""
Data for Gaussian basis
"""
_SZ = {
"H": 1, "He": 1,
"Li": 5, "Be": 5, "B": 5, "C": 5, "N": 5, "O": 5, "F": 5, "Ne": 5,
"Na": 9, "Mg": 9, "Al": 9, "Si": 9, "P": 9, "S": 9, "Cl": 9, "Ar": 9
}
_DZ = {
"H": 2, "He": 2,
"Li": 9, "Be": 9, "B": 9, "C": 9, "N": 9, "O": 9, "F": 9, "Ne": 9,
"Na": ... | hongzhouye/frankenstein | data/basis_data.py | Python | bsd-3-clause | 2,794 | [
"Gaussian"
] | e3c31176104b907d009129c7c5268466d16f27ac149864467171417d75e5d402 |
# -*- coding: utf-8 -*-
# <nbformat>3.0</nbformat>
from __future__ import absolute_import
import sys, os, glob
from datetime import datetime, timedelta
import subprocess
from lmatools.flashsort.gen_autorun import logger_setup, sort_files
from lmatools.flashsort.gen_sklearn import DBSCANFlashSorter
from lmatools.grid... | deeplycloudy/lmatools | lmatools/test/test_gen_autorun_DBSCAN.py | Python | bsd-2-clause | 6,819 | [
"NetCDF"
] | f3fc59f29770b1585a5757aa8985f6e394660469640d12252ef9a141728e7072 |
from datetime import datetime, timedelta
from uuid import uuid4
import misaka
from django.conf import settings
from django.db import models
from django.utils.translation import ugettext_lazy as _
from django.contrib.auth.models import User
from django.core.urlresolvers import reverse
DOMAIN = getattr(settings, 'DOM... | honza/wishlist-app | web/models.py | Python | bsd-2-clause | 5,150 | [
"VisIt"
] | 4293153c7e0b8ded8091023a6adf5419052f857eb4e5ab9a7b43ac0b7ea1f627 |
# ----------------------------------------------------------------------
# Numenta Platform for Intelligent Computing (NuPIC)
# Copyright (C) 2013, Numenta, Inc. Unless you have an agreement
# with Numenta, Inc., for a separate license for this software code, the
# following terms and conditions apply:
#
# This progra... | chetan51/nupic | nupic/research/distributions.py | Python | gpl-3.0 | 5,926 | [
"Gaussian"
] | 776ea47c4de3831abbba811a676ebc8e3c95b2298f4e7153e2bc75a0f362fab6 |
# -*- coding: utf-8 -*-
# Copyright(C) 2008-2010 Romain Bignon
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, version 3 of the License.
#
# This program is distributed in the hope that it w... | jocelynj/weboob | weboob/backends/aum/pages/profile.py | Python | gpl-3.0 | 18,887 | [
"exciting"
] | b88e6a236183d3949b6ee4002d0bdc9fcd51ca3c8451358f57a7a258e0b0be21 |
#!/usr/bin/env python
#
# $File: locateFamilies.py $
#
# This file is part of simuPOP, a forward-time population genetics
# simulation environment. Please visit http://simupop.sourceforge.net
# for details.
#
# Copyright (C) 2004 - 2010 Bo Peng (bpeng@mdanderson.org)
#
# This program is free software: you can redistri... | BoPeng/simuPOP | docs/locateFamilies.py | Python | gpl-2.0 | 2,058 | [
"VisIt"
] | e8e24d33ec0734313666dc5e79c4287ecb981aadb04097f476cbede17266ad33 |
'''
Created on 2012-09-29
A simple script that reads a WRF netcdf-4 file and displays a 2D field in a proper geographic projection;
primary application is plotting the domain with topography.
@author: Andre R. Erler
'''
## includes
# matplotlib config: size etc.
import numpy as np
import matplotlib.pylab as pyl
impo... | aerler/WRF-Projects | src/archive/plotOuterDomain.py | Python | gpl-3.0 | 4,956 | [
"NetCDF"
] | 0f673f76ed31cef46cd9a4830da4c828d792283404c4c82bf63d5642a3efb8fc |
# This test requires Numpy.
import sys
import vtk
from vtk.test import Testing
try:
import numpy as np
except ImportError:
print "WARNING: This test requires Numeric Python: http://numpy.sf.net"
sys.exit(0)
def GenerateCell(cellType, points):
cell = vtk.vtkUnstructuredGrid()
pts = vtk.vtkPoints()
... | berendkleinhaneveld/VTK | Filters/Core/Testing/Python/TestContourCases.py | Python | bsd-3-clause | 4,312 | [
"VTK"
] | 53f6c6aa4f279455c645c9502f297444b970e1258ee3247f2855edf2628e420c |
""" Basic functions for interacting with CS objects
"""
import os
import DIRAC
from DIRAC.Core.Utilities.ReturnValues import S_OK, S_ERROR
from DIRAC.Core.Utilities import List
from DIRAC.ConfigurationSystem.Client.Helpers.Path import cfgPath
from DIRAC.ConfigurationSystem.Client.ConfigurationData import gConfigurat... | andresailer/DIRAC | ConfigurationSystem/private/ConfigurationClient.py | Python | gpl-3.0 | 7,755 | [
"DIRAC"
] | d1306e8a8ee4678f9dc3f9b760205e8a01b0be0e82451cb06a3acf5a9051b48f |
# -*- coding: utf-8 -*-
{
"'Cancel' will indicate an asset log entry did not occur": "' 취소 ' 자산 로그 항목을 표시합니다 발생하지 않았습니다．",
"A location that specifies the geographic area for this region. This can be a location from the location hierarchy, or a 'group location', or a location that has a boundary for the area.": "위치 이... | schlos/eden | languages/ko.py | Python | mit | 244,170 | [
"VisIt"
] | 05cfc5235ad88fdce9e16ab73281a979b1e04e0304434f0f5def28076ace14c1 |
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