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# modified mexican hat wavelet test.py
# spectral analysis for RADAR and WRF patterns
# NO plotting - just saving the results: LOG-response spectra for each sigma and max-LOG response numerical spectra
# pre-convolved with a gaussian filter of sigma=10
import os, shutil
import time, datetime
import pickle
imp... | yaukwankiu/armor | tests/modifiedMexicanHatTest17_kongreycompref.py | Python | cc0-1.0 | 7,769 | [
"Gaussian"
] | ddcc9c6d9ed65c69369da11ec7775c6b029e4147d34d32e0d68fb46daece36d9 |
import sassie.sasmol.sasmol as sasmol
import os, sys, string, glob, numpy
# FIX_PDB
#
# 05/10/2013 -- initial coding : jc
#
# LC 1 2 3 4 5 6 7
# LC45678901234567890123456789012345678901234567890123456789012345678901234567... | madscatt/zazzie_1.5 | trunk/sassie/build/pdbrx/apply_psfgen.py | Python | gpl-3.0 | 9,870 | [
"CHARMM"
] | 8cb99dbbe383eaeb5144e17d82f066a8585e697ec85b7c316a96632c869ded2b |
"""
Generate a C++ DICOM dictionary from a text file.
This program will read a text file generated from the DICOM data
element regsistry table (DICOM Chapter 6 part 6) and will generate
a hash table that can be used for dictionary lookups.
Usage: python makedict.py nemadict.txt > vtkDICOMDictHash.cxx
Usage: python ma... | dgobbi/vtk-dicom | Utilities/makedict.py | Python | bsd-3-clause | 13,728 | [
"VTK"
] | c2c07da355d136dc4bc9be618712e14f734632b824af9f069d4ef67b661278c9 |
from dryscrape.driver.webkit import Driver as DefaultDriver
try:
import urlparse
except ImportError:
import urllib
urlparse = urllib.parse
class Session(object):
""" A web scraping session based on a driver instance. Implements the proxy
pattern to pass unresolved method calls to the underlying driver.
If... | Elbandi/dryscrape | dryscrape/session.py | Python | mit | 1,679 | [
"VisIt"
] | 0fe1dc8161eec568ac147e26be797e233b4c3d6346c53ee089d0e9c741c2375f |
#!/usr/bin/env python3
"""
Reads TNO MACC format emission file and converts to EMEP netcdf
"""
# July 2017
#import collections
from collections import OrderedDict as odict
import os
import sys
import numpy as np
#DS stuff
#import macc.MaccEmepCodes as m
#import mkCdf
import emxemis.maccEmepCodes as m
import emxcdf.... | mifads/pyscripts | emxemis/macc2emep.py | Python | gpl-3.0 | 5,995 | [
"NetCDF"
] | b8ec307fe11a6726907678200045b612fcf7b92c24571361a244efa06164284f |
#
# Copyright 2001 - 2016 Ludek Smid [http://www.ospace.net/]
#
# This file is part of Outer Space.
#
# Outer Space is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (... | dahaic/outerspace | client/osci/client.py | Python | gpl-2.0 | 13,067 | [
"Galaxy"
] | ccaf74df2eb48bcfd79f6ac9714c85c83ced35434febd7651b6296de34c4f1b4 |
""" Tests for tool parameters, more tests exist in test_data_parameters.py and
test_select_parameters.py.
"""
from unittest import TestCase
from galaxy.tools.parameters import basic
from galaxy.util import bunch
from galaxy import model
from elementtree.ElementTree import XML
import tools_support
class DataColumnPa... | mikel-egana-aranguren/SADI-Galaxy-Docker | galaxy-dist/test/unit/tools/test_column_parameters.py | Python | gpl-3.0 | 3,908 | [
"Galaxy"
] | 7df34e9249e989608fff965270685c53dbd4dc82dde9aa5a74031e6d5c992956 |
# Copyright (c) 2014, Alan Saul
# Licensed under the BSD 3-clause license (see LICENSE.txt)
import numpy as np
import unittest
import GPy
from GPy.models import GradientChecker
import functools
import inspect
from GPy.likelihoods import link_functions
from GPy.core.parameterization import Param
from functools import pa... | TianpeiLuke/GPy | GPy/testing/likelihood_tests.py | Python | bsd-3-clause | 30,412 | [
"Gaussian"
] | 56517b6030458fe481ed9345be9b3edd789d48a3deb814830ca2b45a683cca98 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
'''
**hybridLFPy**
==============
Provides methods for estimating extracellular potentials of simplified spiking
neuron network models.
How to use the documentation
----------------------------
Documentation is available in two forms:
1. Docstrings provided with th... | espenhgn/hybridLFPy | hybridLFPy/__init__.py | Python | gpl-3.0 | 2,041 | [
"NEURON"
] | 8f4e63bd34f97721e4b678ce5f5b7a17197e2e7a5ce1b734df5079e1e2111cf0 |
"""
Egg save utilities.
Note that :mod:`pickle` can't save references to functions that aren't defined
at the top level of a module, and there doesn't appear to be a viable
workaround. Normally :mod:`pickle` won't handle instance methods either,
but there is code in place to work around that.
When saving to an egg, ... | HyperloopTeam/FullOpenMDAO | lib/python2.7/site-packages/openmdao.util-0.13.0-py2.7.egg/openmdao/util/eggsaver.py | Python | gpl-2.0 | 28,695 | [
"VisIt"
] | ff7f652a12516400776ebfbaa801dd1dd04b3cd147bc2443c6692144b28c5ae5 |
# Licensed under a 3-clause BSD style license - see LICENSE.rst
"""
This module contains simple statistical algorithms that are
straightforwardly implemented as a single python function (or family of
functions).
This module should generally not be used directly. Everything in
`__all__` is imported into `astropy.stats... | lpsinger/astropy | astropy/stats/funcs.py | Python | bsd-3-clause | 61,351 | [
"Gaussian"
] | aaf9cd41aa9456cfaa4f36a551e65df0f9a9f77d5af450c84d1c67d39e0c6534 |
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class PyMikado(PythonPackage):
"""Mikado is a lightweight Python3 pipeline whose purpose is to f... | LLNL/spack | var/spack/repos/builtin/packages/py-mikado/package.py | Python | lgpl-2.1 | 1,935 | [
"Biopython"
] | 10539bab5340e12b2243209b4182cc6da4a2c75b3c9fb8af68bb7e5defb7348e |
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
#* https://www.gnu.org/licenses/lgpl-2.1.html
from RunApp... | nuclear-wizard/moose | python/TestHarness/testers/FileTester.py | Python | lgpl-2.1 | 1,295 | [
"MOOSE"
] | 69375e245a8050e2cb95a60ddfb90f464036daafbb17e0e639651dbd2092065a |
"""Analyze python import statements."""
from __future__ import (absolute_import, division, print_function)
__metaclass__ = type
import ast
import os
import re
from . import types as t
from .util import (
display,
ApplicationError,
is_subdir,
)
from .data import (
data_context,
)
VIRTUAL_PACKAGES = ... | 2ndQuadrant/ansible | test/lib/ansible_test/_internal/import_analysis.py | Python | gpl-3.0 | 14,032 | [
"VisIt"
] | e7718a282110a498449f402134fe5f0b4a414337151e656358ae59b335c72619 |
# $Id$
#
# Copyright (C) 2006 Greg Landrum
#
# @@ All Rights Reserved @@
# This file is part of the RDKit.
# The contents are covered by the terms of the BSD license
# which is included in the file license.txt, found at the root
# of the RDKit source tree.
#
from rdkit import Geometry
from rdkit import Chem
from ... | soerendip42/rdkit | rdkit/Chem/FeatMaps/FeatMaps.py | Python | bsd-3-clause | 7,771 | [
"Gaussian",
"RDKit"
] | 677d6e648d6e7fda2e66c6c7766c07142067b51ddcd0db736eb937da8035d8f0 |
# This is the instrument-specific file for the PS4000 series of instruments.
#
# pico-python is Copyright (c) 2013-2014 By:
# Colin O'Flynn <coflynn@newae.com>
# Mark Harfouche <mark.harfouche@gmail.com>
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are pe... | arunpersaud/pico-python | picoscope/ps4000.py | Python | bsd-2-clause | 24,959 | [
"Gaussian"
] | 2e6553fef30cd719ea86bdf9261cf2f217561b47ee8f99273b2cae881da6eba1 |
# (c) 2013-2014, Michael DeHaan <michael.dehaan@gmail.com>
# Stephen Fromm <sfromm@gmail.com>
# Brian Coca <briancoca+dev@gmail.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as publish... | benjixx/ansible | lib/ansible/plugins/action/assemble.py | Python | gpl-3.0 | 6,235 | [
"Brian"
] | b1f7371639f5dd2cdec7ae6a4ad20804bca36d7df1536bd7d1f9c746ad6d860f |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2019 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | CDSherrill/psi4 | psi4/driver/qcdb/bfs.py | Python | lgpl-3.0 | 8,260 | [
"Psi4"
] | 8a6a8c03bdcf41bb141f23946aa1d832eccbb602b90decffb99656841ab3dba1 |
from collections import namedtuple
from copy import copy, deepcopy
from . import ast
QUERY_DOCUMENT_KEYS = {
ast.Name: (),
ast.Document: ('definitions', ),
ast.OperationDefinition: ('name', 'variable_definitions', 'directives', 'selection_set'),
ast.VariableDefinition: ('variable', 'type', 'default_va... | dittos/graphqllib | graphql/core/language/visitor.py | Python | mit | 5,185 | [
"VisIt"
] | fd3d77c187b99a8011d5087e65122ab6a852eb4aaf4dbea0ffa965c3b8e7c6fb |
#
# @file TestModelCreator_newSetters.py
# @brief ModelCreator unit tests
#
# @author Akiya Jouraku (Python conversion)
# @author Sarah Keating
#
# $Id: TestModelCreator_newSetters.py 11441 2010-07-09 02:22:23Z mhucka $
# $HeadURL: https://sbml.svn.sourceforge.net/svnroot/sbml/trunk/libsbml/src/bindings/python/... | alexholehouse/SBMLIntegrator | libsbml-5.0.0/src/bindings/python/test/annotation/TestModelCreator_newSetters.py | Python | gpl-3.0 | 4,914 | [
"VisIt"
] | db654b34e44e1b25071f1df53c20354cf357abe3e1b320fac3aafd77f5931a25 |
#!/usr/bin/env python
"""
Copyright (c) 2006-2014 sqlmap developers (http://sqlmap.org/)
See the file 'doc/COPYING' for copying permission
"""
import codecs
import contextlib
import cookielib
import copy
import getpass
import hashlib
import httplib
import inspect
import json
import logging
import ntpath
import os
imp... | Snifer/BurpSuite-Plugins | Sqlmap/lib/core/common.py | Python | gpl-2.0 | 128,687 | [
"VisIt"
] | 4f0d928cf963ddd34554b48ef8e42faec8fe81b49a6d161501d352a139231d84 |
# In[]:
# Import required libraries
import os
import pandas as pd
import dash
import dash_core_components as core
import dash_html_components as html
from dash.dependencies import Input, Output
from flask_caching import Cache
import quantmod as qm
# In[]:
# Create layout
app = dash.Dash("Quantmod Full Demo")
app.c... | jackwluo/py-quantmod | dash_example_full.py | Python | mit | 8,032 | [
"BWA"
] | 10347e47f5779c476f16d53bedacf240132d8acbf4e383d7515e2ae60ec89e66 |
# Copyright (c) 2009-2010 Aldo Cortesi
# Copyright (c) 2010 matt
# Copyright (c) 2010, 2012, 2014 dequis
# Copyright (c) 2010 Philip Kranz
# Copyright (c) 2010-2011 Paul Colomiets
# Copyright (c) 2011 osebelin
# Copyright (c) 2011 Mounier Florian
# Copyright (c) 2011 Kenji_Takahashi
# Copyright (c) 2011 Tzbob
# Copyrig... | kiniou/qtile | libqtile/xcbq.py | Python | mit | 31,290 | [
"FLEUR"
] | d53f10456e22b8724adcbd938b2157e7a90bc84c5f5f6f6d7be0333b6853c386 |
"""
Tests the server collection compute capabilities.
"""
import itertools
import pathlib
from contextlib import contextmanager
from typing import List
import numpy as np
import pandas as pd
import pytest
import qcelemental as qcel
from qcelemental.models import Molecule, ProtoModel
import qcfractal.interface as ptl
... | psi4/DatenQM | qcfractal/tests/test_collections.py | Python | bsd-3-clause | 57,749 | [
"Psi4",
"RDKit"
] | 1eca5098f291db338f6b3342a07f528f8e17fc0ab7836eceac1913094f67aa2d |
'''
Compute the analysis (through direct inversion of B+R innovation matrix) and output the error reduction.
For both observation and forecast errors, statistics need to be provided:
- correlation model
- correlation length
- bias (0 by default)
- variance (constant on the domain)
By default (and as it is a ... | martndj/DaleyMenard1993 | analysis.py | Python | gpl-3.0 | 3,006 | [
"Gaussian"
] | a7bbd9f489dd06be6b713c2f794246184a258916970be30ab4a198ec4f34ecce |
#!/usr/bin/python
# filename: pretty_fasta.py
'''
Simple script that converts an 'ugly' FASTA file -- in which the sequence contains line
breaks -- into a 'pretty' FASTA file with each sequence on a single line.
Dependancies: biopython, python >=2.7
'''
import argparse
from Bio import SeqIO
parser = argparse.... | briney/seqtools | pretty_fasta.py | Python | gpl-2.0 | 1,159 | [
"Biopython"
] | fde4154458b913d3b1acea1b27d18e3d2c4805d7010b349666261112ffa2fd3b |
# -*- Python -*-
#
# @file test_2D_2D_nondiag.py
# @brief MultivariateRandomMixture validation tests
#
# Copyright (C) 2013 EADS IW France
#
# Author(s) : Denis Barbier, IMACS
# Sofiane Haddad, IMACS
#
# This program is free software; you can redistribu... | sofianehaddad/MVRM | test/test_2D_2D_nondiag.py | Python | lgpl-3.0 | 3,101 | [
"Gaussian"
] | e6460279db569d4f6295042b73086b7281a56fc229c72e5811ec30945bfcaf32 |
"""
glc.value_parser
================
Parsing possible values for shape properties.
(c) 2016 LeoV
https://github.com/leovoel/
"""
from numbers import Number
from math import floor
from .utils import lerp, clamp, quadratic, bezier
from .color import Color, str2color, clerp, multi_clerp
import c... | leovoel/glc.py | glc/value_parser.py | Python | mit | 6,630 | [
"Gaussian"
] | 36a88478c5263ec6a095a84c2171ace5586b834e198ff0467ba165a187d7a17c |
"""
fs.contrib.dropboxfs
========
A FS object that integrates with Dropbox.
"""
import time
import shutil
import optparse
import tempfile
import logging
import copy
import pytz
from UserDict import UserDict
from fs.base import *
from fs.path import *
from fs.errors import *
from fs.filelike import StringIO
from dr... | smartfile/fs-dropbox | dropboxfs.py | Python | mit | 21,966 | [
"VisIt"
] | c066026988f557cf9b0cb81a3c3f7166c1828b9d8735f46d50bfac3f653ce4a3 |
import mybayes as mb
from mybayes.cache import *
def test_run():
mb.new_network('net1')
tri = mb.nfact.Triangular(left=0, mode=2, right=6)
# tri.calc_histogram()
# tri.draw_bar()
# tri2 = nd.TriangularNode(left=3, mode=8, right=10)
gauss = mb.nfact.Gaussian(loc=4, scale=1)
cons = mb.nfact.... | dungvtdev/upsbayescpm | main.py | Python | mit | 1,389 | [
"Gaussian"
] | e5349717c0f7a2dc5e59f3221a6479f1db375ad7a46dd303311e21331ec09b65 |
# -*- coding: utf-8 -*-
"""Traits-based GUI for head-MRI coregistration.
Hierarchy
---------
This is the hierarchy of classes for control. Brackets like [1] denote
properties that are set to be equivalent.
::
CoregFrame: GUI for head-MRI coregistration.
|-- CoregModel (model): Traits object for estimating the he... | jaeilepp/mne-python | mne/gui/_coreg_gui.py | Python | bsd-3-clause | 63,755 | [
"Mayavi"
] | 1da8c7c6a2d22ee08c9a1b90eae8e53c95e1478a0e68e9fb62ee01d4071bc965 |
#!/usr/bin/env python3
"""
Copyright 2020 Paul Willworth <ioscode@gmail.com>
This file is part of Galaxy Harvester.
Galaxy Harvester is free software: you can redistribute it and/or modify
it under the terms of the GNU Affero General Public License as published by
the Free Software Foundation, either version 3 ... | pwillworth/galaxyharvester | html/feeds.py | Python | gpl-3.0 | 2,823 | [
"Galaxy"
] | 215349d18314d36929cfdbccc93158065393095fab824a2cf5a1f873c6775557 |
# Recipe creation tool - create build system handler for python
#
# Copyright (C) 2015 Mentor Graphics Corporation
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License version 2 as
# published by the Free Software Foundation.
#
# This program is... | schleichdi2/OPENNFR-6.0-CORE | opennfr-openembedded-core/scripts/lib/recipetool/create_buildsys_python.py | Python | gpl-2.0 | 30,463 | [
"VisIt"
] | fc3a6ac2cb9227c8f18bbcf4359292b99fd13de4cb937daf09bd6b28aad3cf17 |
from scipy import signal
from scipy import optimize
from numpy import mean
import ModifiedGaussianModel as MGM
import numpy as np
import matplotlib.pyplot as plt
from numpy import mean
center_error = 6
threshold_center_error = 3
# function of smooth
def savitzky_golay(y, window_size, order, deriv=0, rate=1):
... | Vincentyao1995/Globalink2017-UBC | python_lib/dvm/pre_processing_mineral.py | Python | mit | 12,960 | [
"Gaussian"
] | 9decdc905251ceaa5aa00021e9dec6616d71314d4387fc7c50c437ac43d99d78 |
import sys
import time
import numpy as np
from gpaw.mpi import world
from gpaw.test.parunittest import ParallelTestCase, ParallelTextTestRunner, \
defaultParallelTestLoader, main
# ------------------------------------------------------------------
class UTParallel(ParallelTestCase):
"""Parallel test suite ... | robwarm/gpaw-symm | gpaw/test/parallel/ut_parallel.py | Python | gpl-3.0 | 4,301 | [
"GPAW"
] | ac36f020625e8cb7362fde1f671095fb3837f95f5240787d4bfe450ff28c5caf |
import numpy as np
import theano.tensor as tt
import pymc3 as pm
from pyGPGO.surrogates.GaussianProcess import GaussianProcess
covariance_equivalence = {'squaredExponential': pm.gp.cov.ExpQuad,
'matern52': pm.gp.cov.Matern52,
'matern32': pm.gp.cov.Matern32}
class ... | hawk31/pyGPGO | pyGPGO/surrogates/GaussianProcessMCMC.py | Python | mit | 4,908 | [
"Gaussian"
] | 4f9c37045a8cb188258964876ebc059e1ec2b14fc7593e562e6c252712987325 |
from __future__ import division, absolute_import, print_function
import warnings
import sys
import collections
import operator
import numpy as np
import numpy.core.numeric as _nx
from numpy.core import linspace, atleast_1d, atleast_2d
from numpy.core.numeric import (
ones, zeros, arange, concatenate, array, asarr... | ViralLeadership/numpy | numpy/lib/function_base.py | Python | bsd-3-clause | 143,583 | [
"Gaussian"
] | 0ca6401d151cdc059b14126b2603d5e50cb86685591eab028a06e1326ae71252 |
##############################################################################
# adaptiveMD: A Python Framework to Run Adaptive Molecular Dynamics (MD)
# Simulations on HPC Resources
# Copyright 2017 FU Berlin and the Authors
#
# Authors: Jan-Hendrik Prinz
# Contributors:
#
# `adaptiveMD` is free software: ... | markovmodel/adaptivemd | adaptivemd/misc/__init__.py | Python | lgpl-2.1 | 1,018 | [
"MDTraj"
] | 009d11152366e163041b4cfcbd799b2c4b908cb3f98b2a17b3e0868b18caa27d |
import subprocess,os
def makeblastdb(fastaFile,datatype,outputname):
"""
this function build database given a fasta file
* fastaFile: can be gzipped or not
"""
if fastaFile.endswith('.gz'):
cmd = ('gunzip -c {input} | makeblastdb -in - -dbtype {type} -title {title} '
'-o... | shl198/Pipeline | Modules/f10_blast.py | Python | mit | 1,759 | [
"BLAST"
] | ee3c310030d1eb7e5d5a1758544f433e662961c739c200d451350fe21b76a939 |
# ----------------------------------------------------------------------------
# cocos2d
# Copyright (c) 2008-2012 Daniel Moisset, Ricardo Quesada, Rayentray Tappa,
# Lucio Torre
# Copyright (c) 2009-2015 Richard Jones, Claudio Canepa
# All rights reserved.
#
# Redistribution and use in source and binary forms, with o... | twenty0ne/CocosBuilder-wxPython | cocos/cocos/director.py | Python | mit | 26,982 | [
"VisIt"
] | bf3b4ffb316bc7543f48bf73ac7b3fe1fcd003a82b7c3ca8232554de5d517309 |
#! /usr/bin/env python
########################################################################
# File : dirac-stager-stage-files
# Author : Daniela Remenska
########################################################################
"""
Submit staging requests for a particular Storage Element! Default DIRAC JobID wil... | DIRACGrid/DIRAC | src/DIRAC/StorageManagementSystem/scripts/dirac_stager_stage_files.py | Python | gpl-3.0 | 2,677 | [
"DIRAC"
] | 66388fb8e550effd23fa9cabfcc591b14ea41ef61f3526a154e080b92600ae03 |
# -*- coding: utf-8 -*-
"""
Classes for (1) marginal and (2) conditional sampling for the IMAGENET data.
Note that every sampler has to implement the method
get_samples(sampleIndices, featVect, numSamples)
"""
import numpy as np
import random
import scipy
import os.path
# utilities
import utils_da... | lmzintgraf/DeepVis-PredDiff | utils_sampling.py | Python | mit | 17,163 | [
"Gaussian"
] | e4acf13212e300c1921f9e90ffe5a9bb9a776dae94b07fe6b90c85aefd1d5c1b |
from ovito.io import import_file
node = import_file("simulation.dump")
node.add_to_scene()
node.source.cell.display.line_width = 1.3
| srinath-chakravarthy/ovito | doc/python/example_snippets/simulation_cell_display.py | Python | gpl-3.0 | 134 | [
"OVITO"
] | 677df7ed70c1c2c556857d1ff0854912490ae5316fd95ec99009978c063ad309 |
# Copyright 2018 Brian May
#
# This file is part of python-tldap.
#
# python-tldap is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# ... | brianmay/python-tldap | tldap/database/helpers.py | Python | gpl-3.0 | 12,541 | [
"Brian"
] | 74e9dd016ce1ef3a756fe42ec04c26ec7c55d279b38f414fffa5f2548a0f118f |
#!/usr/bin/python
"""Test of Orca's presentation of a combo box."""
from macaroon.playback import *
import utils
sequence = MacroSequence()
sequence.append(TypeAction("This is a test."))
sequence.append(KeyComboAction("Left"))
sequence.append(KeyComboAction("<Control><Shift>Left"))
sequence.append(KeyComboAction("... | pvagner/orca | test/keystrokes/oowriter/ui_role_combo_box.py | Python | lgpl-2.1 | 1,440 | [
"ORCA"
] | 22474378d7ee70369dcb7c14f22b76a3c9e0f3a9b7f528cf0d6741425b5e1326 |
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | eric-haibin-lin/mxnet | tests/python/unittest/test_optimizer.py | Python | apache-2.0 | 57,395 | [
"Gaussian"
] | 22c1a5be483ac97784fc1405a2b141a0b7ecf520a11d4c96e6c8fbeee7f422c2 |
from subprocess import call
import os
from flask.ext.script import Manager
from commands.utils import perform
def alt_exec(cmd, alt=None):
"""
Tries to execute command.
If command not found, it tries to execute the alternative comand
"""
try:
call(cmd)
except OSError as e:
if... | uaprom-summer-2015/Meowth | commands/static.py | Python | bsd-3-clause | 3,080 | [
"GULP"
] | 0dbe3b4897b20fefe68ed2cb84b0b8209a048655984160333894c3fe3dfbad23 |
# Author: Robert McGibbon <rmcgibbo@gmail.com>
# Contributors: Brooke Husic <brookehusic@gmail.com>
# Copyright (c) 2014, Stanford University
# All rights reserved.
# -----------------------------------------------------------------------------
# Imports
# --------------------------------------------------------------... | msultan/msmbuilder | msmbuilder/commands/fit_transform.py | Python | lgpl-2.1 | 10,519 | [
"MDTraj"
] | 293d609a8ef0b960de308d8ba26a774e265b78e4405532b4b58134642fe5f336 |
######################################################################
#
# File: bstat.py
#
# Copyright 2013 Brian Beach, All Rights Reserved.
#
######################################################################
import itertools
import math
import scipy.special
import scipy.stats
import unittest
def percentile... | bwbeach/bstat | bstat/bstat.py | Python | mit | 6,881 | [
"Brian"
] | 69b57ee23a7e64db5bf45581f16ec9acbbc49702df82b65c4f1662bf64366147 |
from django.utils.encoding import python_2_unicode_compatible
from django.conf import settings
try:
from django.contrib.contenttypes.fields import GenericForeignKey
except ImportError:
from django.contrib.contenttypes.generic import GenericForeignKey
from django.contrib.contenttypes.models import ContentType
f... | abendleiter/Django-facebook | django_facebook/models.py | Python | bsd-3-clause | 23,221 | [
"VisIt"
] | 1c9da4a22fbe688e3a30b1752540f7e57fe60716f0536274eaa034d85f682f35 |
###############################
# This file is part of PyLaDa.
#
# Copyright (C) 2013 National Renewable Energy Lab
#
# PyLaDa is a high throughput computational platform for Physics. It aims to make it easier to submit
# large numbers of jobs on supercomputers. It provides a python interface to physical input, suc... | pylada/pylada-light | src/pylada/misc/relativepath.py | Python | gpl-3.0 | 10,211 | [
"CRYSTAL",
"VASP"
] | 286ab53cc3b2e6d5ad04d40dc6fbaa11a5c96d46c66423b5bc4048745fcbc7f9 |
from __future__ import division
import ast
import _ast
try:
# Python 3+
NameConstant = _ast.NameConstant
except AttributeError:
# Python 2.7
NameConstant = _ast.Name
class NotSafeExpression(Exception):
pass
class UnsafeNode(Exception):
pass
class Evaler(object):
ALLOWED_NODES = {
... | utter-step/exleval | src/exleval/evaler.py | Python | mit | 3,689 | [
"VisIt"
] | 7c095d46934a6951c1dda3e8fa9e4315d89e8b1dac6675270687ecf856f08479 |
#
# Copyright 2009 Eigenlabs Ltd. http://www.eigenlabs.com
#
# This file is part of EigenD.
#
# EigenD is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) a... | Eigenlabs/EigenD | app_browser2/displayutils.py | Python | gpl-3.0 | 12,860 | [
"Amber"
] | 1ecf63987267e8316e625e17fdeb3646138bee25f2217b41e25829be5e9aa3aa |
# -*- coding: utf-8 -*-
##
## This file is part of Invenio.
## Copyright (C) 2005, 2006, 2007, 2008, 2009, 2010, 2011 CERN.
##
## Invenio is free software; you can redistribute it and/or
## modify it under the terms of the GNU General Public License as
## published by the Free Software Foundation; either version 2 of t... | robk5uj/invenio | modules/bibedit/lib/refextract.py | Python | gpl-2.0 | 406,152 | [
"DIRAC"
] | 2ca6a5910f2a6964f8e9a822e12f0f84e1b79e0dc4b593b758c2ca9dba855ca1 |
#
# @file TestL3KineticLaw.py
# @brief L3 KineticLaw unit tests
#
# @author Akiya Jouraku (Python conversion)
# @author Sarah Keating
#
# $Id$
# $HeadURL$
#
# ====== WARNING ===== WARNING ===== WARNING ===== WARNING ===== WARNING ======
#
# DO NOT EDIT THIS FILE.
#
# This file was generated automa... | alexholehouse/SBMLIntegrator | libsbml-5.0.0/src/bindings/python/test/sbml/TestL3KineticLaw.py | Python | gpl-3.0 | 4,320 | [
"VisIt"
] | 58089fe327bb71e98662dc16278862923b8ee79248c016943ce0813177adcfbd |
# Copyright 2020 DeepMind Technologies Limited.
#
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# https://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agre... | deepmind/deepmind-research | kfac_ferminet_alpha/loss_functions.py | Python | apache-2.0 | 22,520 | [
"ASE"
] | 0fc96ade19c89eb57a3e7a9b8cfe26125b48956174c06cacf4bb0dba468ba773 |
"""
This module module is used to generate the CAs and CRLs (revoked certificates)
Example:
from DIRAC.Core.Security import Utilities
retVal = Utilities.generateRevokedCertsFile()
if retVal['OK']:
cl = Elasticsearch( self.__url,
timeout = self.__timeout,
use_ssl = True,... | andresailer/DIRAC | Core/Security/Utilities.py | Python | gpl-3.0 | 3,182 | [
"DIRAC"
] | 408a8d4c3cf333d67a601f281971089445eeade9d4822320f355fc2056193b00 |
# Copyright 2016 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | AsimmHirani/ISpyPi | tensorflow/contrib/tensorflow-master/tensorflow/contrib/learn/python/learn/estimators/__init__.py | Python | apache-2.0 | 12,005 | [
"Gaussian"
] | 534e3294baf6dd0d25be8a05a1e49dd07a1c1084e24e17792bdd17d9f1afdf24 |
"""test_rdesigneur.py:
"""
__author__ = "Dilawar Singh"
__copyright__ = "Copyright 2017-, Dilawar Singh"
__version__ = "1.0.0"
__maintainer__ = "Dilawar Singh"
__email__ = "dilawars@ncbs.res.in"
__status__ = "Development"
import sys
import os
import numpy as n... | BhallaLab/moose | moose-core/tests/python/test_rdesigneur.py | Python | gpl-3.0 | 1,002 | [
"MOOSE"
] | 09b3067144eff8ba84e5b5dee3ed22f182de6c2519c748653a3b529f5492e446 |
# -*- coding: utf-8 -*-
#
# File: Student.py
#
# Copyright (c) 2008 by []
# Generator: ArchGenXML Version 2.0-beta10
# http://plone.org/products/archgenxml
#
# GNU General Public License (GPL)
#
__author__ = """unknown <unknown>"""
__docformat__ = 'plaintext'
from AccessControl import ClassSecurityInfo
fro... | uwosh/UWOshMusicRecruiting | content/Student.py | Python | gpl-2.0 | 4,310 | [
"VisIt"
] | 9b1580157e035997917e9bda1ed96aa5f8c84bde9a09814f937564de4b4a33bf |
# Mostly been tested on BG/P at Argonne National Laboratory
# There are two modes for generating map files:
#
# Domain - used for band parallelization in TDDFT;
# keep domains for same group of bands
# on adjacent nodes
#
# Band - used for band parallelization in DFT;
# keep do... | robwarm/gpaw-symm | tools/mapfile_bgp.py | Python | gpl-3.0 | 4,742 | [
"GPAW"
] | 7236ae7f70dd7b3568fd3198ece783b00757f098398d264b32f70df263b7d56d |
# -*- coding: utf-8 -*-
import datetime
import random
import re
import string
from lxml.html import parse
from urllib2 import urlopen
from urlparse import urljoin
from urlparse import urlparse
from werkzeug import url_encode
from openerp import models, fields, api, _
URL_REGEX = r'(\bhref=[\'"](?!mailto:)([^\'"]+)[\... | web30s/odoo-9.0c-20160402 | hello/templates/openerp/addons/link_tracker/models/link_tracker.py | Python | gpl-3.0 | 9,930 | [
"VisIt"
] | 96fe26016d319a8384e95a2ebc3972f0b5835553d35ac5c9435aa3cc25672bd9 |
#* This file is part of the MOOSE framework
#* https://www.mooseframework.org
#*
#* All rights reserved, see COPYRIGHT for full restrictions
#* https://github.com/idaholab/moose/blob/master/COPYRIGHT
#*
#* Licensed under LGPL 2.1, please see LICENSE for details
#* https://www.gnu.org/licenses/lgpl-2.1.html
# Note that... | nuclear-wizard/moose | modules/navier_stokes/test/tests/scalar_adr/supg/generate_forcing_functions.py | Python | lgpl-2.1 | 1,156 | [
"MOOSE"
] | 94de6cd753e8d2fde89bda7587f1e2464712618d5405d3b258ef4d383beec1fa |
#!/usr/bin/env python
# This tool takes a tab-delimited textfile as input and creates another column in the file which is the result of
# a computation performed on every row in the original file. The tool will skip over invalid lines within the file,
# informing the user about the number of lines skipped.
import sy... | volpino/Yeps-EURAC | tools/stats/column_maker.py | Python | mit | 4,345 | [
"Galaxy"
] | ac10dd8452450b82b6b6abeec52e667ca15653ad01f26ac179933f16eba9347c |
# this is (possibly broken) code to perform a marker-based watershed
# segmentation on a mesh by making use of a pre-segmentation
# modification of curvature homotopy
# test this on some synthetic data (cube with markers on all six faces)
# before you use it for anything serious.
# IDEA:
# use vtkPolyDataConnectivity... | nagyistoce/devide | modules/attic/meshMarkerWatershed.py | Python | bsd-3-clause | 21,412 | [
"VTK"
] | f9570246ca0feefc28b70c36f890b9c432ea35563eedc071aa637a58e6befad4 |
import theano
import theano.tensor as T
from theano import config
from crop import LocallySoftRectangularCropper
from crop import Gaussian
import numpy as np
from datasets import get_bmnist_streams
import matplotlib
# Force matplotlib to not use any Xwindows backend.
matplotlib.use('Agg')
import matplotlib.pyplot as pl... | negar-rostamzadeh/rna | test_2.py | Python | mit | 1,165 | [
"Gaussian"
] | 834cf0bb476b99a193aa2122aa4a407e76460cc159aa5dd18c0f6211c94b0169 |
# Data sources
database(
thermoLibraries = ['primaryThermoLibrary', 'GRI-Mech3.0'],
reactionLibraries = [],
seedMechanisms = [],
kineticsDepositories = ['training'], # 'all', 'default'==['training'], [],
kineticsFamilies = ['!Intra_Disproportionation','!Substitution_O'],
kineticsEstimator = 'r... | faribas/RMG-Py | examples/rmg/1,3-hexadiene/input.py | Python | mit | 1,860 | [
"MOPAC"
] | e2a835aa687bc988731b02df8e08fd9bd4d11354eaab27426379810002884ace |
# -*- coding: utf-8 -*-
# Copyright (c) 2015-2018, Exa Analytics Development Team
# Distributed under the terms of the Apache License 2.0
"""
Q-Chem Ouput Editor
#######################
Editor classes for simple Q-Chem output files
"""
import six
import numpy as np
import pandas as pd
from exa import TypedMeta
from ex... | alexvmarch/atomic | exatomic/qchem/output.py | Python | apache-2.0 | 2,088 | [
"Q-Chem"
] | 31529864e9916aa97aa20d0b4ef060f588fd03e1b85c84f073c3502326433466 |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2000-2007 Donald N. Allingham
# Copyright (C) 2008 Brian G. Matherly
# Copyright (C) 2010 Jakim Friant
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as publi... | SNoiraud/gramps | gramps/plugins/tool/changenames.py | Python | gpl-2.0 | 10,637 | [
"Brian"
] | 9b9fbd75f35c784a2f21cc1a3bbbd02171b9a7277920fb556cda747157880279 |
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
# SNABSuite -- Spiking Neural Architecture Benchmark Suite
# Copyright (C) 2017 Christoph Jenzen
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software F... | hbp-unibi/SNABSuite | plot/spike_plot.py | Python | gpl-3.0 | 2,686 | [
"NEURON"
] | 98d174ff2db2df3e79e632ff3c467fbcc8eb3ef2889b0aca9af555b485dd83e1 |
from unittest import skip
from django.test import override_settings
from mainapp.tests.live.chromedriver_test_case import ChromeDriverTestCase
class AccountTest(ChromeDriverTestCase):
fixtures = ["initdata"]
password1 = "8I$KJ37Kdk"
email = "test@example.org"
password2 = "sdir23744!ä"
def check... | meine-stadt-transparent/meine-stadt-transparent | mainapp/tests/live/test_account.py | Python | mit | 3,209 | [
"VisIt"
] | 7bfd2457735c614beacc58a44888e6406cbe2c0ba5db95bcadf1f402a9b57ec3 |
from __future__ import division, print_function, unicode_literals
"""
This module implements the workflow to design new materials.
"""
__author__ = "Chuck-Hou Yee"
__copyright__ = "Copyright 2015, Correlated Materials Laboratory"
__version__ = "0.1"
__maintainer__ = "Chuck-Hou Yee"
__email__ = "chuckyee@physics.rutge... | correlatedmaterialslaboratory/pymatdesign | pymatdesign/design.py | Python | mit | 3,810 | [
"pymatgen"
] | 84bb754ace1dae323e22b97bbf19cf69c37cb15735007ee5e8585ced4ef963ae |
# Orca
#
# Copyright 2005-2009 Sun Microsystems Inc.
# Copyright 2010-2011 Orca Team
# Copyright 2011-2015 Igalia, S.L.
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version ... | chrys87/orca-beep | src/orca/scripts/web/speech_generator.py | Python | lgpl-2.1 | 18,460 | [
"ORCA"
] | f48f312d04a8b6c91d6256a10ff3e2802d976cd557da52693b931cf214e749a8 |
########################################################################
# $HeadURL: $
# File : JobWrapper.py
# Author : Stuart Paterson
########################################################################
""" The Job Wrapper Class is instantiated with arguments tailored for running
a particular job. The JobW... | avedaee/DIRAC | WorkloadManagementSystem/JobWrapper/JobWrapper.py | Python | gpl-3.0 | 61,898 | [
"DIRAC"
] | 025e91944d4cc1d53419df6e24f33077f1fab7668219306ce1b96cc7ca1bcc8c |
import pyspeckit
import numpy as np
# Create our own gaussian centered at 0 with width 1, amplitude 5, and
# gaussian noise with amplitude 1
x = pyspeckit.units.SpectroscopicAxis(np.linspace(-10,10,50), unit='km/s')
e = np.random.randn(50)
d = np.exp(-np.asarray(x)**2/2.)*5 + e
# create the spectrum object
sp = pyspe... | vlas-sokolov/pyspeckit | examples/example_pymc.py | Python | mit | 3,465 | [
"Gaussian"
] | 20e870096715fa6f9a004f36c0fcc2f3504d755337123a425f26517ab2c26f3c |
#!/usr/bin/env python
from ecmwfapi import ECMWFDataServer
server = ECMWFDataServer(url="https://api.ecmwf.int/v1",
key="",
email="laurensgeffert@gmail.com")
# Retrieve data in netCDF format
server.retrieve({
'stream': "oper",
'levtype': "sfc",
... | JanLauGe/ReadingBus | web_api.py | Python | mit | 1,318 | [
"NetCDF"
] | fe36159b8114bb763b13a182868f8fea01ce9887018f336544a53f5e4ef7b4f1 |
from . import base
from .verlet import *
from .openmm import *
| Autodesk/molecular-design-toolkit | moldesign/integrators/__init__.py | Python | apache-2.0 | 63 | [
"OpenMM"
] | 411822ecd16f10cc34ad98e5a145f353db7a4c72ee487beaee677332d5acad5f |
# -*- coding: utf-8 -*-
from __future__ import absolute_import, division, print_function, unicode_literals
import os
import unittest
from Bio.Seq import Seq
import recordtype
import hgvs.parser
import hgvs.utils.altseqbuilder as altseqbuilder
import framework.mock_input_source as mock_input_data_source
class TestA... | jmuhlich/hgvs | tests/test_hgvs_variantmapper_cp_altseqbuilder.py | Python | apache-2.0 | 6,971 | [
"Biopython"
] | 561734552ffcaa664df44cf9286eb0ae6ef42f33cbea9f61b11081d596c62777 |
# Copyright (c) 2010-2012 OpenStack Foundation
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agree... | swiftstack/swift | test/unit/obj/test_diskfile.py | Python | apache-2.0 | 381,139 | [
"VisIt"
] | 9f31876ad6fba7eaa6fb08d63bddff66fb1ec94fd0d5d1b3d84f8fbb1ea37bc0 |
# -*- coding: utf-8 -*-
"""
Created on Tue Sep 22 14:23:47 2015
@author: lpinello
"""
import os
import sys
import subprocess as sb
import gzip
import argparse
import unicodedata
import string
import re
import logging
logging.basicConfig(level=logging.INFO,
format='%(level... | lucapinello/CRISPResso | CRISPResso/CRISPRessoWGSCORE.py | Python | agpl-3.0 | 25,943 | [
"Bowtie"
] | c676d8f86db0eb9e74d5c0272f6ae38fbd8e8178c4b67ce447e251f631caed4f |
"""
DIRAC.ConfigurationSystem.Client.Helpers package
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
__RCSID__ = "$Id$"
from DIRAC.ConfigurationSystem.Client.Helpers.Path import *
from DIRAC.ConfigurationSystem.Client.Helpers.CSGlobals import getCSExt... | yujikato/DIRAC | src/DIRAC/ConfigurationSystem/Client/Helpers/__init__.py | Python | gpl-3.0 | 359 | [
"DIRAC"
] | 17f3451e0581950e1a5287e2054d77aedfbb1a44f87ba20cd600c893d445fef7 |
"""
========================================
Special functions (:mod:`scipy.special`)
========================================
.. module:: scipy.special
Nearly all of the functions below are universal functions and follow
broadcasting and automatic array-looping rules. Exceptions are
noted.
.. seealso::
`scipy.s... | asnorkin/sentiment_analysis | site/lib/python2.7/site-packages/scipy/special/__init__.py | Python | mit | 27,481 | [
"Gaussian"
] | bd3033315d7deabafca7ac52b88e88d707888bb8f1d6177afa81f1599bd803e4 |
'''<h1>Library for surface x-ray diffraction simulations of superlattices</h1>
<p> The model is based on Fullertons algorithm for superlattices as
described in Phys. Rev. B vol. 45 p. 9292 (1992).
'''
# Programmed by Matts Bjorck 20091215
import numpy as np
import genx.models.sxrd
from genx.models.utils import f, rho... | haozhangphd/genx-py3 | genx/models/sxrd_mult.py | Python | gpl-3.0 | 12,753 | [
"Gaussian"
] | 4968797d93f4f0064bc9d47e140f2607f21074d9444308a4821dec2a6c7bf49d |
""":func:`~pandas.eval` parsers
"""
import ast
import tokenize
from functools import partial
import numpy as np
import pandas as pd
from pandas import compat
from pandas.compat import StringIO, lmap, zip, reduce, string_types
from pandas.core.base import StringMixin
from pandas.core import common as com
import panda... | mbayon/TFG-MachineLearning | venv/lib/python3.6/site-packages/pandas/core/computation/expr.py | Python | mit | 26,138 | [
"VisIt"
] | f0b7dccbf331d6bfe6317c1664b631a0b19a6e470c59dc0585c4291a50b7b4d6 |
from __future__ import print_function
import mxnext as X
import mxnet as mx
from symbol.builder import FasterRcnn, RpnHead
from models.FPN.builder import FPNRpnHead
from models.maskrcnn import bbox_post_processing
from utils.patch_config import patch_config_as_nothrow
from utils.deprecated import deprecated
class ... | TuSimple/simpledet | models/maskrcnn/builder.py | Python | apache-2.0 | 12,833 | [
"Gaussian"
] | c6924056c37fa65afe2cfe470ddd103863eb2cc7aa0431249c5c55c647705f33 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
# (c) 2018, Chris Houseknecht <@chouseknecht>
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
from __future__ import absolute_import, division, print_function
__metaclass__ = type
ANSIBLE_METADATA = {'metadata_version': '1.1',
... | hyperized/ansible | lib/ansible/modules/clustering/k8s/k8s.py | Python | gpl-3.0 | 9,744 | [
"Galaxy"
] | 6680de81985e1743210f1cb67ce185ed8ab640467fb92227ae94e5c4be37f422 |
# Copyright (c) 2003-2013 LOGILAB S.A. (Paris, FRANCE).
# http://www.logilab.fr/ -- mailto:contact@logilab.fr
#
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, o... | lukaszpiotr/pylama_with_gjslint | pylama/checkers/pylint/checkers/design_analysis.py | Python | lgpl-3.0 | 16,521 | [
"VisIt"
] | 4ad61a4a66f2a37831a01f44c6991e71290ef19cfbb6dfa07f88816b3cfb94bb |
##
## This file is part of the sigrok-meter project.
##
## Copyright (C) 2013 Uwe Hermann <uwe@hermann-uwe.de>
## Copyright (C) 2014 Jens Steinhauser <jens.steinhauser@gmail.com>
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU General Public License as publish... | robacklin/sigrok | sigrok-meter/mainwindow.py | Python | gpl-3.0 | 5,394 | [
"VisIt"
] | 57070897380c277046710d3201a94154509622bfc5d743d9ff98aafaf181ddb3 |
# Licensed under the GPL: https://www.gnu.org/licenses/old-licenses/gpl-2.0.html
# For details: https://github.com/PyCQA/pylint/blob/main/LICENSE
import collections
import traceback
from astroid import nodes
class ASTWalker:
def __init__(self, linter):
# callbacks per node types
self.nbstatement... | PyCQA/pylint | pylint/utils/ast_walker.py | Python | gpl-2.0 | 3,250 | [
"VisIt"
] | f2cea7044d8c01175861db3b992f314b74f99b2933682ac6512e4db14fcca58b |
# -*- encoding: utf-8 -*-
from django import forms
from models import *
class UserForm(forms.ModelForm):
class Meta:
model = User
fields = ('username','phone_one','phone_two','contact_phone_one','contact_phone_two','blood_type','about_me')
class FileForm(forms.ModelForm):
class Meta:
m... | flipjack/misrutas | project/app/forms.py | Python | mit | 7,162 | [
"CASINO"
] | 6021eecf32b827ae930e8daa74728dfa1acf66a12738916b36f00aaefb512f17 |
# -*- coding: UTF-8 -*-
"""
Compute NMR observables from MD trajectories
The usage of MPI is optional.
The MPI parallelized batch function is only defined if mpi4py is installed.
"""
from __future__ import print_function, division
import sys, os, time, string
import mdtraj as md
import numpy as np
import zipfile, bz... | schilli/MOPS | MOPS/MOPS.py | Python | gpl-3.0 | 21,387 | [
"MDTraj"
] | 0fc63131874a1bae2e4b06f42cc35d68e670a0ad12ac8011910e2d0123f57855 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from monty.json import MSONable
import numpy as np
from scipy.ndimage.filters import gaussian_filter1d
from pymatgen.util.coord import get_linear_interpolated_value
"""
This module defines classes to represen... | montoyjh/pymatgen | pymatgen/core/spectrum.py | Python | mit | 6,760 | [
"Gaussian",
"pymatgen"
] | bf5380330a5e1e3e8315ae498d83ce9b95529b8d94b53225a87b5792ae14e8d4 |
import os
import sys
import vtkAll as vtk
from ddapp import botpy
import math
import time
import types
import functools
import numpy as np
from ddapp import transformUtils
from ddapp import lcmUtils
from ddapp.timercallback import TimerCallback
from ddapp.asynctaskqueue import AsyncTaskQueue
from ddapp import objectmo... | RussTedrake/director | src/python/ddapp/bihandeddemo.py | Python | bsd-3-clause | 26,318 | [
"VTK"
] | 0fa245a6438a1c4c4e7912acce59318027323e7cadd441c2f22f8c974c5c61a6 |
#pylint: disable=missing-docstring
####################################################################################################
# DO NOT MODIFY THIS HEADER #
# MOOSE - Multiphysics Object Oriented Simulation Environment ... | Chuban/moose | python/MooseDocs/common/Builder.py | Python | lgpl-2.1 | 6,497 | [
"MOOSE"
] | b1f99481fd0f194cc643f814aedcb9bbfe512ee26815ab47e885e0267fe397c1 |
from h2o.estimators.xgboost import *
from tests import pyunit_utils
def xgboost_milsongs_gaussian_medium():
assert H2OXGBoostEstimator.available()
# Import big dataset to ensure run across multiple nodes
training_frame = h2o.import_file(pyunit_utils.locate("bigdata/laptop/milsongs/milsongs-train.csv.gz")... | h2oai/h2o-dev | h2o-py/tests/testdir_algos/xgboost/pyunit_milsongs_gaussian_medium.py | Python | apache-2.0 | 1,568 | [
"Gaussian"
] | 91d89f217d13d6474347625c1bf281387a59ad978c5112522dbd18617d25986b |
__author__ = 'olga'
import unittest
from gscripts.mapping.repeat_align import RepeatAlign
import tests
import os
import shutil
import sys
class Test(unittest.TestCase):
out_dir = 'test_output'
def setUp(self):
os.mkdir(self.out_dir)
def tearDown(self):
shutil.rmtree(self.out_dir)
d... | YeoLab/gscripts | tests/test_repeat_align.py | Python | mit | 3,242 | [
"Bowtie"
] | 22742566e32e127a1e112f19e3e35e540865ce81fefa3a97b096ff3e9d9239b9 |
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | wagavulin/arrow | python/pyarrow/parquet.py | Python | apache-2.0 | 41,154 | [
"VisIt"
] | acc456e85db4d5fa32cf2bc957eb784c44d95a413f465cb5bcb072aea963bd51 |
# Copyright 2009 by Osvaldo Zagordi. All rights reserved.
# Revisions copyright 2010 by Peter Cock.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""Command line wrapper for the short read aligner ... | poojavade/Genomics_Docker | Dockerfiles/gedlab-khmer-filter-abund/pymodules/python2.7/lib/python/Bio/Sequencing/Applications/_Novoalign.py | Python | apache-2.0 | 8,377 | [
"Biopython"
] | 6b2af4e617965ba6753fcbcff2afe9ab43426ba9600c8109f9c05ed1436c8323 |
#!/usr/bin/python
#import timeit
#start = timeit.default_timer()
import os
cwd=os.getcwd()
cwd = cwd + '/'
#no_lig_file=open(cwd+'no_ligand',"r")
#data=[]
#with no_lig_file as ins:
# ins = [line.rstrip('\n') for line in ins]
# for line in ins:
# data.append(line)
#no_lig=int(data[0])
#print no_lig
os.system("python sb... | S-John-S/MAT | pymol_script_run.py | Python | mit | 822 | [
"PyMOL"
] | 5fe33cc47206c0a6dba28a883c29ab722c04fd414822a1341e488a3a870df8af |
# Copyright 2014 SolidBuilds.com. All rights reserved
#
# Authors: Ling Thio <ling.thio@gmail.com>
from __future__ import print_function # Use print() instead of print
from flask import url_for
def test_page_urls(client):
# Visit home page
response = client.get(url_for('home_page'))
assert b'<h1>Home pa... | OSPK/vis-tool | tests/test_page_urls.py | Python | bsd-2-clause | 1,713 | [
"VisIt"
] | 46672c8f0479a3ba241b6bf6652dfb1f20b2f9869a4e98991633266a9ffad807 |
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