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import os
import sys
from utils import *
import operator
from time import localtime, strftime
import argparse
import re
from Bio import SeqIO
from abifpy import Trace
import pylab
# using abifpy because it allows to change the cutoff value for quality trimming
# Usage: python ~/scripts/python/sanger_seq_analysis.py -i... | richrr/scripts | python/sanger_seq_analysis.py | Python | gpl-3.0 | 11,354 | [
"BLAST",
"Biopython"
] | 23c79f9764eca2a297cc702b4f7d486ffe0b2d99d14365bf75def60648905bed |
#!/usr/bin/env python3
"""
Copyright 2019 Paul Willworth <ioscode@gmail.com>
This file is part of Galaxy Harvester.
Galaxy Harvester is free software: you can redistribute it and/or modify
it under the terms of the GNU Affero General Public License as published by
the Free Software Foundation, either version 3 ... | pwillworth/galaxyharvester | html/verifyUser.py | Python | gpl-3.0 | 2,837 | [
"Galaxy"
] | 241eb87b880ce6f0c1e401665efcebfac1d0d7aca5839f5171cc8e882c121293 |
# -*- coding: utf-8 -*-
{
"'Cancel' will indicate an asset log entry did not occur": "' 취소 ' 자산 로그 항목을 표시합니다 발생하지 않았습니다．",
"A location that specifies the geographic area for this region. This can be a location from the location hierarchy, or a 'group location', or a location that has a boundary for the area.": "위치 이... | flavour/ifrc_qa | languages/ko.py | Python | mit | 244,238 | [
"VisIt"
] | dc706be937a9443254df8f4bb1f195f4921634afe8c62c6864a48834bb940292 |
#!/usr/bin/env python2
# encoding: utf-8
"""
ImdbParser.py
Created by Ichabond on 2012-07-01.
Module for Pythonbits to provide proper and clean
imdb parsing.
"""
import sys
import json
from attrdict import AttrDict
try:
import imdbpie
except ImportError:
print >> sys.stderr, "IMDbPie is required for Python... | Ichabond/Pythonbits | ImdbParser.py | Python | gpl-3.0 | 3,377 | [
"TINKER"
] | 2652a2930473f2f8630df1bbbfb10ace9fd3af0ad1d355406736471e6975d0fd |
import ast
import copy
import _ast
from nimoy.ast_tools.expression_transformer import ComparisonExpressionTransformer, MockAssertionTransformer, \
ThrownExpressionTransformer
from nimoy.runner.exceptions import InvalidFeatureBlockException
SETUP = 'setup'
GIVEN = 'given'
WHEN = 'when'
THEN = 'then'
EXPECT = 'expec... | Luftzig/nimoy | nimoy/ast_tools/feature_blocks.py | Python | apache-2.0 | 9,996 | [
"VisIt"
] | 7336283cd06447f33a293512c840a037040a5521673b4b6ed7fcff54e4e17175 |
#!/usr/bin/env python
#
# Copyright 2012 Free Software Foundation, Inc.
#
# This file is part of GNU Radio
#
# SPDX-License-Identifier: GPL-3.0-or-later
#
#
from gnuradio import gr, gr_unittest, filter
import sys
class test_firdes(gr_unittest.TestCase):
def setUp(self):
pass
def tearDown(self):
... | jdemel/gnuradio | gr-filter/python/filter/qa_firdes.py | Python | gpl-3.0 | 9,316 | [
"Gaussian"
] | b439ff1cbb2d4220ed4728f10e2374c28e4a0072a7b848eb133d45ddf6146d3b |
#!/usr/bin/env python
# Run this test like so:
# $ vtkpython TestTextureGlyph.py -D $VTK_DATA_ROOT \
# -B $VTK_DATA_ROOT/Baseline/Graphics/
#
# $ vtkpython TestTextureGlyph.py --help
# provides more details on other options.
import os
import os.path
import vtk
from vtk.test import Testing
class TestTextureGlyph(T... | cjh1/VTK | Filters/Core/Testing/Python/TestTextureGlyph.py | Python | bsd-3-clause | 2,760 | [
"VTK"
] | 5c46248aabca328461ac07830f0366870ca5ce350c74f0abefd29bb4b26ac71e |
"""
==========================================
Statistical functions (:mod:`scipy.stats`)
==========================================
.. module:: scipy.stats
This module contains a large number of probability distributions as
well as a growing library of statistical functions.
Each included distribution is an instanc... | kmspriyatham/symath | scipy/scipy/stats/__init__.py | Python | apache-2.0 | 8,828 | [
"Gaussian"
] | b80589e0741ca088247fcae22d45d40f1b8cc82e2691e4940576d9f0ff95f2e1 |
"""
Module simtk.unit.baseunit
Contains BaseUnit class, which is a component of the Unit class.
This is part of the OpenMM molecular simulation toolkit originating from
Simbios, the NIH National Center for Physics-Based Simulation of
Biological Structures at Stanford, funded under the NIH Roadmap for
Medical Research... | casawa/mdtraj | mdtraj/utils/unit/baseunit.py | Python | lgpl-2.1 | 7,031 | [
"OpenMM"
] | 3b35373227a620f6b9a467d91a97f4da44d82ef96fe5310253d37246c81b07e8 |
# Copyright (C) 2010-2019 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later v... | espressomd/espresso | samples/h5md.py | Python | gpl-3.0 | 1,847 | [
"ESPResSo"
] | cc690bd0ff848b15ac70cccc06625b05c1edcdfaab6b7cfec0fa3f16b357bbe6 |
"""Generate self-contained HTML reports from MNE objects."""
# Authors: Alex Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Mainak Jas <mainak@neuro.hut.fi>
# Teon Brooks <teon.brooks@gmail.com>
#
# License: BSD (3-clause)
import os
import os.path as op
import fnmatch
import re
import codecs
i... | jaeilepp/mne-python | mne/report.py | Python | bsd-3-clause | 68,089 | [
"Mayavi"
] | 6d0514b48b75ef2428feaf75228dbdcf863fdea5ee0cce236b4cb9bdd9f33e96 |
#!/usr/bin/env python
# Copyright 2014-2019 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | gkc1000/pyscf | pyscf/scf/uhf.py | Python | apache-2.0 | 34,590 | [
"PySCF"
] | 9c826e965772ebb6abdef06de4f2ef775e57ce8ea440f5ef2d01345e58a4f404 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
import logging
import numpy as np
from abc import ABCMeta, abstractmethod
from monty.json import MSONable, MontyDecoder
from functools import lru_cache
from pymatgen.core.structure import Structure, PeriodicS... | montoyjh/pymatgen | pymatgen/analysis/defects/core.py | Python | mit | 24,675 | [
"VASP",
"pymatgen"
] | 374e49bbd69c1b9be29d65fb62ac87e726a68aab16f198acf0292b5258177d4c |
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RAllelicimbalance(RPackage):
"""Investigates Allele Specific Expression.
Provides ... | iulian787/spack | var/spack/repos/builtin/packages/r-allelicimbalance/package.py | Python | lgpl-2.1 | 2,834 | [
"Bioconductor"
] | 8a23dfc8df44618e3a08d9c751df5e05b49fb59475351fd92b5b1a5a0b69f890 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
################################################################################
#
# RMG - Reaction Mechanism Generator
#
# Copyright (c) 2002-2010 Prof. William H. Green (whgreen@mit.edu) and the
# RMG Team (rmg_dev@mit.edu)
#
# Permission is hereby granted, free of c... | enochd/RMG-Py | rmgpy/data/transport.py | Python | mit | 25,212 | [
"VisIt"
] | 4148a07a7d38757502c94d6a4d59c6bf6d1979a2b393a5566a64eb403cac1a23 |
import morb
from morb import rbms, stats, updaters, trainers, monitors, units, parameters
import theano
import theano.tensor as T
import numpy as np
import gzip, cPickle
import matplotlib.pyplot as plt
plt.ion()
from utils import generate_data, get_context
import time
# DEBUGGING
from theano import ProfileMode
#... | benanne/morb | examples/example_advparams.py | Python | gpl-3.0 | 6,204 | [
"Gaussian"
] | ca1b2613b725df30f0cc585d537d592036773853096280f78dee2e23429c6d70 |
# Copyright (c) 2003-2013 LOGILAB S.A. (Paris, FRANCE).
# http://www.logilab.fr/ -- mailto:contact@logilab.fr
#
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, o... | godfryd/pylint | checkers/variables.py | Python | gpl-2.0 | 30,287 | [
"VisIt"
] | 9f94d5ab7045220b99cc1a9763113cfedcd09d0d8b8c4b86504fcfe034d040b7 |
# -*- coding: utf-8 -*-
# python-holidays
# ---------------
# A fast, efficient Python library for generating country, province and state
# specific sets of holidays on the fly. It aims to make determining whether a
# specific date is a holiday as fast and flexible as possible.
#
# Authors: dr-prodigy <maurizio.... | ryanss/holidays.py | test/countries/test_honduras.py | Python | mit | 1,659 | [
"COLUMBUS"
] | b1d7e8ded8a46ddcbb3aae6ba5089b8d7a5f1f739d6ab16abdd60a4fa6ee26c0 |
# Copyright 2008-2012 Nokia Siemens Networks Oyj
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law... | Senseg/robotframework | src/robot/model/itemlist.py | Python | apache-2.0 | 2,357 | [
"VisIt"
] | ddb2b2bec15765f3edbec64c91a3a2af38d9744603256ebf14cbea6ac4a4689b |
__all__ = ['apply_transforms','apply_transforms_to_points']
import os
from .. import core
from ..core import ants_image as iio
from .. import utils
def apply_transforms(fixed, moving, transformlist,
interpolator='linear', imagetype=0,
whichtoinvert=None, compose=None,
... | ANTsX/ANTsPy | ants/registration/apply_transforms.py | Python | apache-2.0 | 12,151 | [
"Gaussian"
] | 74c792d38aa47e4c1f5d6eb21c13a365195610e42ad9ffb435b1b702372cfa00 |
import os
import sys
import logging
from time import time
import ujson as json
import tornado.ioloop
from tornado.web import gen
from tornado.httpclient import AsyncHTTPClient, HTTPClient, HTTPRequest
class AlertRunner(object):
def __init__(self, conf):
self.log = logging.getLogger("galaxy.alert_runner")
self.c... | mcholste/galaxy | lib/alerts.py | Python | mit | 2,881 | [
"Galaxy"
] | 9970661c0626654414ea32b5a5f7def655c9b629c48d518b654a366ab1e7a772 |
from PythonQt import QtCore, QtGui, QtUiTools
import ddapp.applogic as app
import math
import numpy as np
from ddapp.timercallback import TimerCallback
from ddapp.simpletimer import SimpleTimer
from ddapp.debugVis import DebugData
from ddapp import robotstate
import ddapp.visualization as vis
import ddapp.vtkAll as vtk... | gizatt/director | src/python/ddapp/playbackpanel.py | Python | bsd-3-clause | 14,010 | [
"VTK"
] | 40bdfec2d1dffce5d2401aef47ddea2eebea5014932e77ca4292379449023727 |
# -*- coding: utf-8 -*-
from DeviceTemplate import Ui_Form
import time, os, sys, gc
from PyQt4 import QtCore, QtGui
#from acq4.pyqtgraph.graphicsItems import ImageItem
import acq4.Manager
from acq4.util.imageAnalysis import *
from acq4.util.debug import *
import numpy as np
import acq4.pyqtgraph as pg
#import acq4.pyqt... | tropp/acq4 | acq4/devices/Scanner/DeviceGui.py | Python | mit | 20,304 | [
"Gaussian"
] | b0af8bce4b75e608cb08aaf5040520d4127d69e8c6347e261590364c56f80989 |
#!/usr/bin/env python
# -*- coding: utf8 -*-
# *****************************************************************
# ** PTS -- Python Toolkit for working with SKIRT **
# ** © Astronomical Observatory, Ghent University **
# *****************************************************************
##... | SKIRT/PTS | magic/analysis/sources.py | Python | agpl-3.0 | 33,016 | [
"Galaxy",
"Gaussian"
] | dd893bbd7ea596f20cb50319bef026f2c3f1a5c0b8c56cd33c677f4fb11195be |
import os
import tempfile
import shutil
from django.test import TransactionTestCase
from django.core.exceptions import ValidationError
from django.core.files.uploadedfile import UploadedFile
from django.contrib.auth.models import Group
from django.db import IntegrityError
from hs_core import hydroshare
from hs_core.h... | ResearchSoftwareInstitute/MyHPOM | hs_app_netCDF/tests/test_netcdf_metadata.py | Python | bsd-3-clause | 34,897 | [
"NetCDF"
] | 4fb1782e83fc301178ceffccd4448ebf2a8cf55f886c0c3b9fe9c4b5bd846ce4 |
#
# Copyright 2016 The BigDL Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in ... | intel-analytics/BigDL | python/chronos/test/bigdl/chronos/data/test_tsdataset.py | Python | apache-2.0 | 48,695 | [
"ORCA"
] | 5e9a6a2276eb483b31a015d4e692af20cb9f5a1a9fcd92133b6fd6afc3a47ea0 |
#
# Author: Henrique Pereira Coutada Miranda
# Run a GW calculation using Yambo
#
from __future__ import print_function
from yambopy import *
from qepy import *
from schedulerpy import *
yambo = 'yambo'
scheduler = Scheduler.factory
#check if the nscf cycle is present
if os.path.isdir('nscf/bn.save'):
print('nsc... | alexmoratalla/yambopy | tutorial/bn/gw_bn.py | Python | bsd-3-clause | 1,592 | [
"Yambo"
] | 9eb10b765d9a52c5c9f9764a4a794436d17be9af8dc5413786e990f955927042 |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2002-2007 Donald N. Allingham
# Copyright (C) 2007-2008 Brian G. Matherly
# Copyright (C) 2011 Tim G L Lyons
# Copyright (C) 2011 Doug Blank <doug.blank@gmail.com>
#
# This program is free software; you can redistribute it and/or modify
... | prculley/gramps | gramps/gen/filters/rules/person/__init__.py | Python | gpl-2.0 | 6,921 | [
"Brian"
] | 9674daca0a1769f4b9940be87e9a936af92cfb7f8d78112202d73951c3d2c2a8 |
#!/usr/bin/env python
# Copyright 2014-2020 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | sunqm/pyscf | pyscf/lib/diis.py | Python | apache-2.0 | 12,031 | [
"PySCF"
] | a106b3b64a02b28409102a7704997b16b2356d6d409f2244aa99955b5e8c4f7f |
"""
This function saves all the mesh files as .hdf5 to be handled by the other modules and enable parallel computation
Copyright 2017 Anna Wirbel
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Softwa... | awirbel/debadvect | code/makeFiles.py | Python | gpl-3.0 | 2,586 | [
"VTK"
] | e6b1cfbe9c46cf7bac033b638a7d07d3eebdf3e689677ddec1fef94aaa7134f0 |
from a_baharEntropy import *
##
## Biskit, a toolkit for the manipulation of macromolecular structures
## Copyright (C) 2004-2018 Raik Gruenberg & Johan Leckner
##
## This program is free software; you can redistribute it and/or
## modify it under the terms of the GNU General Public License as
## published by the Free ... | graik/biskit | archive_biskit2/scripts/analysis/a_baharFluct.py | Python | gpl-3.0 | 2,090 | [
"Amber"
] | 95bdbf4229f29b93c238a75007f25a6d789b8c4ab52e5ffeca6659b993158567 |
from Components.Pixmap import MovingPixmap, MultiPixmap
from Tools.Directories import resolveFilename, SCOPE_SKIN
from xml.etree.ElementTree import ElementTree
from Components.config import config, ConfigInteger
from Components.RcModel import rc_model
from boxbranding import getBoxType
from enigma import ePoint
config... | popazerty/beyonwiz-4.1 | lib/python/Screens/Rc.py | Python | gpl-2.0 | 5,252 | [
"VisIt"
] | 275d940fb833a614f22ff1cbdb53c4631ef48c337e20ba7af2892f6fb6e6eef3 |
"""
* Created by Zhenia Syryanyy (Yevgen Syryanyy)
* e-mail: yuginboy@gmail.com
* License: this code is under GPL license
* Last modified: 2017-02-28
"""
from feff.libs.class_Spectrum import Spectrum, GraphElement, TableData, BaseData
from feff.libs.class_for_parallel_comparison import Model_for_spectra, FTR_gulp_to_fe... | yuginboy/from_GULP_to_FEFF | feff/libs/class_FTR_Spectrum_Compare_2_type_Models.py | Python | gpl-3.0 | 9,847 | [
"FEFF"
] | b34970bb0be94f0d56fb3bbe19201054c09fba5ab795368359712800e3de21bf |
from unittest import TestCase
from nose import SkipTest
from nose.tools import eq_, assert_raises, ok_
from parsimonious.exceptions import UndefinedLabel, BadGrammar
from parsimonious.nodes import Node
from parsimonious.grammar import rule_grammar, RuleVisitor, Grammar
class BootstrapingGrammarTests(TestCase):
... | Zearin/python-parsimonious | parsimonious/tests/test_grammar.py | Python | mit | 8,638 | [
"VisIt"
] | 728ec6cb712d5b5ae1bdc70233e70665c3de5bddfadefbcdda230faf2c58d553 |
# admin.py
# This file controls the look and feel of the models within the Admin App
# They appear in the admin app once they are registered at the bottom of
# this code (same goes for the databrowse app)
from django.conf import settings # needed if we use the GOOGLE_MAPS_API_KEY from settings
# Import the admin si... | springmeyer/djmapnik | examples/geoadmin/world/admin.py | Python | bsd-3-clause | 3,892 | [
"VisIt"
] | 136035af7c67857d1ab35b1c4082c5ef79d7db91f9bbb99fab446efe941f97d9 |
import numpy as np
from pproc import DiscretizedPointProcess
#from ess import elliptical_slice
#from util import nd_grid_centers, whitened_mh, x_grid_centers
#from kernel import MultiKronKernel #Kernel, SQEKernel
#from kron_util import kron_mat_vec_prod
#from mpl_toolkits.mplot3d.axes3d import Axes3D
#
# Spatio-tempor... | andymiller/flecks | models_modules/st_lgcp.py | Python | mit | 8,337 | [
"Gaussian"
] | c5c66f41c63ea49df7907681d79eff0353286c28ec49ab34ef6829ab34cf3096 |
# -*- encoding: utf-8 -*-
# Yuuno - IPython + VapourSynth
# Copyright (C) 2017 StuxCrystal (Roland Netzsch <stuxcrystal@encode.moe>)
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published by
# the Free Software Foundation, eit... | stuxcrystal/yuuno | yuuno_ipython/ipython/namespace.py | Python | lgpl-3.0 | 2,195 | [
"MOE"
] | 485c200446cd76471eaba024ed1869f6eb9aa99a3a9cb59323f15c3c74819fcd |
# Copyright (c) 2015, Ecole Polytechnique Federale de Lausanne, Blue Brain Project
# All rights reserved.
#
# This file is part of NeuroM <https://github.com/BlueBrain/NeuroM>
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are ... | liesbethvanherpe/NeuroM | neurom/fst/tests/test_get_features.py | Python | bsd-3-clause | 35,643 | [
"NEURON"
] | fdfdab585199aa92b1cec14a7d5de470dca86782d0423c00486a991272eb3869 |
import numpy as np
def _make_gaussian(x_pts, y_pts, mfd, x_offset=0, y_offset=0):
x0 = (x_pts[-1]+x_pts[0])/2 + x_offset
y0 = (y_pts[-1]+y_pts[0])/2 + y_offset
xx, yy = np.meshgrid(x_pts, y_pts)
sigma = mfd * 0.707 / 2.355
sigma_x = sigma
sigma_y = sigma
gaus_2d = np.exp(-((xx-x0)**2/(2*s... | jtambasco/modesolverpy | modesolverpy/coupling_efficiency.py | Python | mit | 2,678 | [
"Gaussian"
] | 09f7b139e8692ea4e4aa163ec8847160485ec9a5b4d9c5c8d244874acef15e49 |
import subprocess
import os
import json
from scipy.optimize import linprog
import sys
import pickle
import math
import numpy
#from pandas import *
#this program will minimize cost per hour of distributed compute by utilizing Linear Programming to minimize cost/hour constrained by 1: minimum total cores desired at once... | kosticlab/aether | lp/lp.py | Python | mit | 15,631 | [
"VisIt"
] | ba2cdca469a3bc058d2c4b91d2ce0f843e54f9fe3081558dc62b2af71722ae20 |
# The MIT License (MIT)
#
# Copyright (c) 2015 Brian Wray (brian@wrocket.org)
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# ... | wrocket/Tulip-Chess | tests/basic-tests/test_notation.py | Python | mit | 13,407 | [
"Brian"
] | 4b2bcf53a545e3f56b2c8befc64ccbf730575a89c9f281680b41b08ea3796181 |
# coding=utf-8
# Copyright 2022 The Google Research Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicab... | google-research/google-research | behavior_regularized_offline_rl/brac/configs/dcfg_gaussian1.py | Python | apache-2.0 | 1,490 | [
"Gaussian"
] | c28d0ca6047d2de38b9efa790f4c5428bc1f00089fc66a98ce9f28e5b54fb129 |
r"""
Nearly incompressible linear elasticity in mixed displacement-pressure
formulation with comments.
Find :math:`\ul{u}`, :math:`p` such that:
.. math::
\int_{\Omega} D_{ijkl}\ e_{ij}(\ul{v}) e_{kl}(\ul{u})
- \int_{\Omega} p\ \nabla \cdot \ul{v}
= 0
\;, \quad \forall \ul{v} \;,
- \int_{\Omega} ... | rc/sfepy | examples/linear_elasticity/linear_elastic_up.py | Python | bsd-3-clause | 3,482 | [
"VTK"
] | 62c4261507ffd7dc180c31aab6abd91bde381482b3f158985512eae3aed00caf |
import numpy,glob,os,struct,statistics,ctypes
from multiprocessing import RawArray
from . import blast
class Score:
def __init__(self):
'''Create an object for storing scores.'''
self.endNodesToEdgeD = {}
self.numEdges = 0 # to start out
self.strainPairScoreLocationD = {}
... | ecbush/xtrans | xenoGI/Score.py | Python | gpl-3.0 | 25,929 | [
"BLAST"
] | 6cbda79169fcfbe2b251926d6699169d6389db21899188a8e458b05a8e0167ce |
# Copyright 2014 Google Inc.
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or (at your option) any later
# version.
#
# This program is distributed in the hope... | HackFisher/depot_tools | third_party/pylint/checkers/python3.py | Python | bsd-3-clause | 19,887 | [
"VisIt"
] | a5ff5360398c7485246879919a451d2730345ce03ffdbac531dc3c004d96e7d1 |
# -*- coding: utf-8 -*-
import cv2
import numpy as np
# import matplotlib.pyplot as plt
from PIL import Image
from difflib import SequenceMatcher
from PIL import *
from PIL import ImageEnhance
import time
from pytesseract import image_to_string, image_to_boxes
import os
def findcoordinateOfName(path):
image = cv... | Hubert51/AutoGrading | learning/Ruijie/handwriting_recognization/test.py | Python | mit | 7,393 | [
"Gaussian"
] | fde7df03ccbf32a43076696690eb17095b06d2ec643e03fdf095048057442d9f |
# ============================================================================
#
# Copyright (C) 2007-2012 Conceptive Engineering bvba. All rights reserved.
# www.conceptive.be / project-camelot@conceptive.be
#
# This file is part of the Camelot Library.
#
# This file may be used under the terms of the GNU General... | jeroendierckx/Camelot | camelot/view/controls/exception.py | Python | gpl-2.0 | 3,572 | [
"VisIt"
] | b1e5fa2c23bdc5897c1f258cb1e8235a5cd9d24666c8fa0e463fcfdd21a3c486 |
#!/usr/bin/env python
# =============================================================================
# MODULE DOCSTRING
# =============================================================================
"""
Test State classes in mcmc.py.
"""
# ==========================================================================... | choderalab/openmmtools | openmmtools/tests/test_mcmc.py | Python | mit | 23,342 | [
"OpenMM"
] | 648303ceb4ab7e8dea92a3d4694f61c46d70f8ee0975f051b027df358f8ffda2 |
# -*- coding: utf-8 -*-
from datetime import datetime
import gc
from itertools import chain
import logging
import math
import numpy
import os
import progressbar
import re
import subprocess
from typing import Any, Dict, List, Tuple
from django.db import connection
from django.conf import settings
from django.http impo... | tomka/CATMAID | django/applications/catmaid/control/nat/r.py | Python | gpl-3.0 | 73,199 | [
"NEURON"
] | 5e312290c7a54514522f5247c3cd764b165b2384cc21b061f01d6e77e1f00c94 |
# (C) British Crown Copyright 2010 - 2015, Met Office
#
# This file is part of Iris.
#
# Iris is free software: you can redistribute it and/or modify it under
# the terms of the GNU Lesser General Public License as published by the
# Free Software Foundation, either version 3 of the License, or
# (at your option) any l... | decvalts/iris | lib/iris/tests/test_plot.py | Python | gpl-3.0 | 32,069 | [
"NetCDF"
] | 82651d7c9c23472c88c687d59060afd6c022cf7216ea2b4212405b2a4ced8d06 |
#!/usr/bin/env python
import sys
import os
try:
from PyQt4 import QtCore, QtGui
except ImportError:
try:
from PySide import QtCore, QtGui
except ImportError:
raise ImportError("Cannot load either PyQt or PySide")
import vtk
from vtk.qt4.QVTKRenderWindowInteractor import *
from vtk.test im... | HopeFOAM/HopeFOAM | ThirdParty-0.1/ParaView-5.0.1/VTK/GUISupport/Qt/Testing/Python/TestQVTKRenderWindowInteractor.py | Python | gpl-3.0 | 1,175 | [
"VTK"
] | 7ba2225934ba75d83afa820ce3e6d21dc7a2b2b8a35e18907713cf06d0439f9e |
import os
from ase import *
from gpaw import GPAW, setup_paths
from gpaw.vdw import FFTVDWFunctional
from ase.parallel import rank, barrier
from gpaw.atom.generator import Generator
from gpaw.atom.configurations import parameters
def test():
h=4.02
vdw = FFTVDWFunctional(verbose=1)
... | qsnake/gpaw | oldtest/vdw/gr.py | Python | gpl-3.0 | 1,774 | [
"ASE",
"GPAW"
] | 560639d6622ca0c84dd5700f24595b40c33ca028f0492686935268ac4c711011 |
# -*- coding: utf-8 -*-
# Copyright: (c) 2019, Ansible Project
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
# Make coding more python3-ish
from __future__ import (absolute_import, division, print_function)
__metaclass__ = type
import json
import os
import pytest
import ... | ghjm/ansible | test/units/galaxy/test_collection.py | Python | gpl-3.0 | 41,272 | [
"Galaxy"
] | c9f83a9602d4451e57407c498ae8234e5cb22b9278a37af0d9a0490d9f2b0184 |
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.pkg.builtin.gromacs import Gromacs
class GromacsSwaxs(Gromacs):
"""Modified Gromacs for small-angle scatt... | LLNL/spack | var/spack/repos/builtin/packages/gromacs-swaxs/package.py | Python | lgpl-2.1 | 4,763 | [
"Gromacs"
] | 99f8779474c4163178cb53dc180a7ad38989320670baa7f1312e349f9f903853 |
from collections import defaultdict
from random import randrange, uniform
import pytest
from diofant import (E1, RR, Abs, Add, And, Chi, Ci, Ei, Heaviside, I, Integer,
Integral, Mul, Piecewise, Rational, Shi, Si, Symbol,
acosh, acoth, arg, asin, atan, besseli, besselj, cbrt,
... | skirpichev/omg | diofant/tests/integrals/test_meijerint.py | Python | bsd-3-clause | 29,300 | [
"Gaussian"
] | 5781735978a734817533ad1660450307ee882949059050d8cd16fcdc869fe882 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# --- BEGIN_HEADER ---
#
# usercache - User state caching
# Copyright (C) 2003-2010 The MiG Project lead by Brian Vinter
#
# This file is part of MiG.
#
# MiG is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as pu... | heromod/migrid | mig/shared/usercache.py | Python | gpl-2.0 | 9,630 | [
"Brian"
] | 130426dc1c0d4f16607c9c70f60ee34c8c1553f53351ddf6dfb3978aa34b2199 |
#
# Copyright (C) 2001 greg Landrum
#
# unit testing code for the composite model COM server
from __future__ import print_function
from rdkit import RDConfig
import unittest
try:
from win32com.client import Dispatch
except ImportError:
Dispatch = None
@unittest.skipIf(Dispatch is None, 'Test for Windows only')... | rvianello/rdkit | rdkit/ML/Composite/UnitTestCOMServer.py | Python | bsd-3-clause | 2,698 | [
"RDKit"
] | 9c4c7a9beb691c58f0d18a49107d3073edd0174e0b02b07ade558b340c09ea85 |
"""
@name: Modules/Core/_test/test_Utilities.py
@author: D. Brian Kimmel
@contact: D.BrianKimmel@gmail.com
@copyright: (c) 2015-2019 by D. Brian Kimmel
@license: MIT License
@note: Created on Jul 28, 2015
@Summary:
"""
__updated__ = '2019-09-07'
# Import system type stuff
from twisted.trial import u... | DBrianKimmel/PyHouse | Project/src/Modules/Core/_test/test_Utilities.py | Python | mit | 816 | [
"Brian"
] | 8e53d4ab9ef04c39a0f18894885fc82ba7f4dc70fa5c3603bf25b8b010699c09 |
import re, os, sys
from Tester import Tester
from RunParallel import RunParallel # For TIMEOUT value
class RunApp(Tester):
@staticmethod
def validParams():
params = Tester.validParams()
params.addRequiredParam('input', "The input file to use for this test.")
params.addParam('test_name', ... | danielru/moose | python/TestHarness/testers/RunApp.py | Python | lgpl-2.1 | 10,540 | [
"MOOSE"
] | caacf42c3c6ed17bebb3f302e423aa8d3e3a05d91ec95fd818373d5542b2b5be |
# Copyright 2007-2016 The HyperSpy developers
#
# This file is part of HyperSpy.
#
# HyperSpy is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later ve... | vidartf/hyperspy | hyperspy/tests/model/test_model_storing.py | Python | gpl-3.0 | 4,809 | [
"Gaussian"
] | 2a9a13f4f9659d3ef6ac03feae63d08492577cb10c2637b4907d08da43c868ae |
import numpy as np
from cryspy import const
from cryspy import geo
from cryspy import crystal
from cryspy.fromstr import fromstr as fs
from cryspy import tables
def make_blender_script(atomset, metric, structurename, outfilename):
assert isinstance(atomset, crystal.Atomset), \
"atomset must be of type cry... | cryspy-team/cryspy | cryspy/blender.py | Python | gpl-3.0 | 16,530 | [
"CRYSTAL"
] | 3162b766f341f2eb8b6a88befa051948abd11d5854369f5e47e6c3c9b814d843 |
import time
from animation import *
from asteroidField import *
from background import *
from loader import *
from physics import *
from player import *
from powerup import *
import pygame
from pygame.locals import *
from rotatingMenu_img import *
from spacemenu import *
from starField import *
# teclas dos jogadore... | borgaster/SpaceWarsEvolved | main.app/Contents/Resources/main.py | Python | mit | 16,811 | [
"Galaxy"
] | f98d410133bbac1944da75410d8836cde24c2a63e73924020a223a8f44e92bd5 |
# Copyright (C) 2012, Christof Buchbender
# BSD Licencse
import math
import sys
import os
import scipy
from scipy.optimize import leastsq as least
from numpy import asarray, mean, std, where, exp, log, sqrt, arange
from copy import deepcopy as copy
import random as rnd
from generaltools import log_tools
import astro... | buchbend/astrolyze | build/lib.linux-x86_64-2.7/astrolyze/functions/astro_functions.py | Python | bsd-3-clause | 45,599 | [
"Gaussian"
] | 4e124ec7f4b8665e945d642b1f62f9122d25623d8ca01e0ce9fddf831a1ab734 |
# encoding: utf-8
import datetime
from south.db import db
from south.v2 import SchemaMigration
from django.db import models
class Migration(SchemaMigration):
def forwards(self, orm):
# Changing field 'IndicatorData.percent'
db.alter_column('profiles_indicatordata', 'percent', self.gf('dja... | ProvidencePlan/Profiles | communityprofiles/profiles/oldmigrations/0027_auto__chg_field_indicatordata_percent.py | Python | mit | 13,183 | [
"MOE"
] | 1c91ab54cff1b8f5a4321079a05556b425c5b9206ec9b6555ab902b04b808bf0 |
"""
The :mod:`tslearn.metrics` module gathers time series similarity metrics.
"""
import warnings
import numpy
from joblib import Parallel, delayed
from numba import njit, prange
from scipy.spatial.distance import pdist, cdist
from sklearn.metrics.pairwise import euclidean_distances
from sklearn.utils import check_ra... | rtavenar/tslearn | tslearn/metrics.py | Python | bsd-2-clause | 57,713 | [
"Gaussian"
] | b38d61f44cdc8fbce755d6866924b8dcf86f7480b724a3673e04a04e64c56c26 |
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by appl... | gkc1000/pyscf | pyscf/nao/m_vxc_lil.py | Python | apache-2.0 | 2,160 | [
"PySCF"
] | 7ac905b072229aef61a408fc41f3f9356b1b9c3718ce069f9c5933407c4b9087 |
#!/usr/bin/env python
########################################################################
# $HeadURL$
# File : dirac-production-job-delete
# Author : Stuart Paterson
########################################################################
"""
Delete DIRAC job from WMS, if running it will be killed
"""
__RCSID__ = ... | Sbalbp/DIRAC | Interfaces/scripts/dirac-wms-job-delete.py | Python | gpl-3.0 | 2,211 | [
"DIRAC"
] | 9669b1299ab73e900423228d2d92eda9f39cd908ceb0b75600d00525418cd563 |
from bok_choy.promise import EmptyPromise
from bok_choy.web_app_test import WebAppTest
from a11y_tests.mixins import CoursePageTestsMixin
from a11y_tests.pages import CourseEnrollmentDemographicsAgePage
_multiprocess_can_split_ = True
class CourseEnrollmentDemographicsAgeTests(CoursePageTestsMixin, WebAppTest):
... | edx/edx-analytics-dashboard | a11y_tests/test_course_enrollment_demographics_axs.py | Python | agpl-3.0 | 1,371 | [
"VisIt"
] | 96bc3295bd518c25b6e8954ace85724fdd9a12c424d675e13852b67e144f8c77 |
#Chien Kai Wang, Brian Wan, William Chen
#TCP CHAT CLIENT
#CITATION:
#http://www.bogotobogo.com/python/python_network_programming_tcp_server_client_chat_server_chat_client_select.php
#by K Hong
import pyaudio
import sys
import socket
import select
import time
import pickle
from array import array
from struct impor... | bmwanz/AudioMessenger | Trial Code/client_RSA.py | Python | apache-2.0 | 5,781 | [
"Brian"
] | 0377525ab4ccf2e18d6cf55c01cf71a3a46caab0837908e4672922cc7f244344 |
#usage: python copyrightify <base_dir>
#apply copyright header block to all relevant files
import argparse
import os
from datetime import date
#extensions to apply copyright header block to
default_extensions = [ "scala" ]
year = date.today().year
copyright = "/*\n" + " * Copyright (c) " + str(year) +" Oracle and/o... | TiarkRompf/Relite | utl/copyrightify.py | Python | agpl-3.0 | 2,527 | [
"VisIt"
] | 3be543752be71cc3bd0f8358113904a1651a956db3fe472a3cf7212435600f9b |
# -*- coding: utf-8 -*-
"""
***************************************************************************
dataobject.py
---------------------
Date : August 2012
Copyright : (C) 2012 by Victor Olaya
Email : volayaf at gmail dot com
****************************... | p0cisk/Quantum-GIS | python/plugins/processing/tools/dataobjects.py | Python | gpl-2.0 | 16,911 | [
"NetCDF"
] | 2265af93315382daade8a3eec86a448531a8c6f779d0d279cc890cd4fb0c546b |
# Setup script for megaman: scalable manifold learning
# LICENSE: Simplified BSD https://github.com/mmp2/megaman/blob/master/LICENSE
import io
import os
import re
import sys
import subprocess
def read(path, encoding='utf-8'):
path = os.path.join(os.path.dirname(__file__), path)
with io.open(path, encoding=en... | jakevdp/megaman | setup.py | Python | bsd-2-clause | 3,827 | [
"VisIt"
] | 4cd9442ea6ddcecd9726197e5246678db1f4b6eb05a1b59bb976c0137107d37a |
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
#
# Rp-Bp documentation build configuration file, created by
# sphinx-quickstart on Sat Feb 3 15:02:40 2018.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# auto... | dieterich-lab/rp-bp | docs/conf.py | Python | mit | 5,837 | [
"Biopython",
"pysam"
] | a0a5968ca41573446c4eedf4fd7c09e4f9ec2bb012e6fa5c9b125ea387ad2d2b |
"""\
Calculate density of cells in embeddings
"""
import numpy as np
from anndata import AnnData
from typing import Union, Optional, Sequence
from .. import logging as logg
from .._utils import sanitize_anndata
def _calc_density(x: np.ndarray, y: np.ndarray):
"""\
Calculates the density of points in 2 dimen... | theislab/scanpy | scanpy/tools/_embedding_density.py | Python | bsd-3-clause | 5,990 | [
"Gaussian"
] | 55e01054758f25ab555d3c888c94da7ec9f3031755bd5fc411017ec488072af9 |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module implements input and output processing from Gaussian.
"""
import re
import warnings
import numpy as np
import scipy.constants as cst
from monty.io import zopen
from pymatgen.core.composition ... | davidwaroquiers/pymatgen | pymatgen/io/gaussian.py | Python | mit | 59,149 | [
"Gaussian",
"pymatgen"
] | d22ad28e067db3ad5ba0f82854e81c2d911d02b25bde198710423fd9785aeabb |
# Copyright (C) 2014,2015 Nippon Telegraph and Telephone Corporation.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by ... | ishidawataru/gobgp | tools/pyang_plugins/bgpyang2golang.py | Python | apache-2.0 | 24,971 | [
"VisIt"
] | 4288eb5da48f95bca00d6dbdb5219d8ed5a2be4974f74ac4f4f5971e7b946be3 |
#!/usr/bin/env python
# Copyright (c) 2012 The Chromium Authors. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
import copy
import os
import pyauto_functional # Must be imported before pyauto
import pyauto
import test_utils
class NTPTest(p... | leighpauls/k2cro4 | chrome/test/functional/ntp.py | Python | bsd-3-clause | 19,947 | [
"VisIt"
] | 36355c9985d5f2255e0b8f8dc2955a60b240ee0f03eb141307e6ef84c130ce58 |
"""
See test_cfsom(self) and ImagePoster for an example of how to use and call
the PlotEngine system from a simulation.
"""
import unittest
import random
from pprint import pprint
from math import pi
import param
import topo
from topo.pattern import Gaussian
from topo.plotting import plot
from topo.plotting.bitmap i... | Tasignotas/topographica_mirror | topo/tests/unit/testcfsom.py | Python | bsd-3-clause | 5,393 | [
"Gaussian"
] | ed3ae798daf57cf391e615087517e7c23c260ae029173684f8edcf92353dac9f |
import numpy as np
from gpaw import debug
from gpaw.io.tar import Reader, Writer
from gpaw.utilities import is_contiguous
from gpaw.analyse.observers import Observer
from gpaw.transformers import Transformer
from gpaw.tddft import attosec_to_autime, eV_to_aufrequency
# -----------------------------------------------... | robwarm/gpaw-symm | gpaw/tddft/fourier.py | Python | gpl-3.0 | 11,330 | [
"GPAW",
"Gaussian",
"NetCDF"
] | 0f282c04a5eb1584b16d79537b65144716319b53a1fc52022cdcec6f01a319e8 |
"""Analyze python import statements."""
from __future__ import absolute_import, print_function
import ast
import os
import uuid
from lib.util import (
display,
ApplicationError,
)
VIRTUAL_PACKAGES = set([
'ansible.module_utils.six',
])
def get_python_module_utils_imports(compile_targets):
"""Retur... | Sodki/ansible | test/runner/lib/import_analysis.py | Python | gpl-3.0 | 8,634 | [
"VisIt"
] | 5a308227b5fc2fc7771631305c851aa2ebd516cc2b46c25e40985fdc06f7c0d3 |
"""Testing for Gaussian process regression """
# Author: Jan Hendrik Metzen <jhm@informatik.uni-bremen.de>
# License: BSD 3 clause
import numpy as np
from scipy.optimize import approx_fprime
from sklearn.gaussian_process import GaussianProcessRegressor
from sklearn.gaussian_process.kernels \
import RBF, Constan... | mbayon/TFG-MachineLearning | venv/lib/python3.6/site-packages/sklearn/gaussian_process/tests/test_gpr.py | Python | mit | 13,070 | [
"Gaussian"
] | 1acad0cc4824bac1ac5fcc608f6353322e89a9db0a9fae57a1db0bfc8a6d7ef1 |
#! /usr/bin/env python2
############################################################################
# Copyright (C) 2011 by Hans Robeers #
# #
# This program is free software; you can redistribute it and#... | hrobeers/finFoil_legacy | console.py | Python | gpl-3.0 | 2,046 | [
"Mayavi"
] | 491612d98081e7f0d42e7d667a7f37c3c0b93de72897ce08ed7d7a356b23d15b |
# ANNarchy - EIF_cond_exp
#
# Network of EIF neurons with exponentially decreasing conductance-based synapses.
#
# This is a reimplementation of the Brian example:
#
# http://brian.readthedocs.org/en/1.4.1/examples-misc_expIF_network.html
#
# authors: Helge Uelo Dinkelbach, Julien Vitay
from ANNarchy import... | vitay/ANNarchy | examples/pyNN/EIF_cond_exp.py | Python | gpl-2.0 | 2,251 | [
"Brian",
"NEURON"
] | bd8c89a1d10b328b48c3b3fa07d7d7e8add980eb417649dc701a3e82c15d01ca |
import sys
import codecs
import gzip
import argparse
import cPickle
import theano
import numpy
from theano import tensor as T
from event_ae import EventAE
from process_data import DataProcessor
argparser = argparse.ArgumentParser(description="Score using Selectional Preference AutoencoDEr")
argparser.add_argument('te... | pdasigi/spade | score.py | Python | gpl-2.0 | 10,654 | [
"Gaussian"
] | 2d514806059f17bd1ba4a16606467c2b956431a8b16309abfcbaae19e652d6f7 |
# Copyright (C) 2012 met.no
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the ho... | metno/python-diana | python/metno/bdiana.py | Python | gpl-2.0 | 24,142 | [
"NetCDF"
] | 761ad4362aa47dca633cc022e63f36bab789d16a73372b83663c808a6282df09 |
#!/usr/bin/env python
from __future__ import division
__license__ = "GPL"
__version__ = "1.9.1-dev"
__maintainer__ = "Jenya Kopylov"
__email__ = "jenya.kopylov@gmail.com"
from qiime.util import (parse_command_line_parameters,
get_options_lookup,
make_option)
from qiime.... | ssorgatem/qiime | scripts/parallel_pick_otus_sortmerna.py | Python | gpl-2.0 | 5,196 | [
"BLAST"
] | afd2b19ef54f1301521cd5f282d656cd6b8f6315e7b9ff515c0055efeeb540f2 |
# -*- coding: utf-8 -*-
'''
Module for retrieving random information from Random.org
.. versionadded:: 2015.5.0
:configuration: This module can be used by either passing an api key and version
directly or by specifying both in a configuration profile in the salt
master/minion config.
For example:
..... | smallyear/linuxLearn | salt/salt/modules/random_org.py | Python | apache-2.0 | 25,227 | [
"Gaussian"
] | bee4f5e771fb18caa4a61f8bf05924bf7e851e5de70768c7c7e0692121f62a53 |
"""
PureMVC Python Demo - wxPython Employee Admin
By Toby de Havilland <toby.de.havilland@puremvc.org>
Copyright(c) 2007-08 Toby de Havilland, Some rights reserved.
"""
import puremvc.patterns.proxy
import enum, vo, main
class UserProxy(puremvc.patterns.proxy.Proxy):
NAME = "UserProxy"
def __init__(s... | PureMVC/puremvc-python-demo-wxpython-employeeadmin | src/model.py | Python | bsd-3-clause | 2,996 | [
"MOE"
] | 2a988d459e41479778b18b4230c74f14cd594727fba1f99e8cbfa64d2eb53c55 |
# GromacsWrapper: xpm.py
# Copyright (c) 2012 Oliver Beckstein <orbeckst@gmail.com>
# Released under the GNU Public License 3 (or higher, your choice)
# See the file COPYING for details.
"""
:mod:`gromacs.fileformats.convert` --- converting entries of tables
============================================================... | Becksteinlab/GromacsWrapper | gromacs/fileformats/convert.py | Python | gpl-3.0 | 8,143 | [
"Gromacs"
] | f0278d79a1ecdfd1d438dc8b98ca8e4cbe81ff876b7dca4d134ee6716a10275f |
#!/usr/bin/python
# -*- coding: utf-8 -*-
import numpy as np
import matplotlib.pyplot as plt
def curve_fitting(degree, num):
x = np.linspace(0, 1)
plt.plot(x, np.sin(2 * np.pi * x), 'g', linewidth=2, label='sin(2πx)')
gaussian = np.random.normal(0, 0.1, num)
rx = np.linspace(0, 1, num)
ry = np.sin... | zlcnup/csmath | hw1_curve_fitting/curve_fitting.py | Python | mit | 950 | [
"Gaussian"
] | 1e1334176a4f7bf3d567567c498a95b21eccb40d8a0ddc3f2a628d6c792dc93e |
import unittest
from test import test_support
from itertools import *
from weakref import proxy
import sys
import operator
import random
def onearg(x):
'Test function of one argument'
return 2*x
def errfunc(*args):
'Test function that raises an error'
raise ValueError
def gen3():
'Non-restartable... | mancoast/CPythonPyc_test | cpython/251_test_itertools.py | Python | gpl-3.0 | 34,142 | [
"GULP"
] | 610e78e775c395ceef3454ce1f8d9f36f5a70cc55b084b5d1e6eb2ecefe3b847 |
# Sample module in the public domain. Feel free to use this as a template
# for your modules (and you can remove this header and take complete credit
# and liability)
#
# Contact: Brian Carrier [carrier <at> sleuthkit [dot] org]
#
# This is free and unencumbered software released into the public domain.
#
# Anyone is f... | mhmdfy/autopsy | pythonExamples/fileIngestModule.py | Python | apache-2.0 | 8,593 | [
"Brian"
] | dee17800e19d3d4a6e9f58836935627e73a0395a97a689c243afc037cdf1434c |
#!/usr/bin/env python2
###############################################################################
# ------------------------- Description ---------------------------------------
###############################################################################
# This script will be used to generate daily met fields ... | stevenjoelbrey/PMFutures | Python/average6HourlyData.py | Python | mit | 14,668 | [
"NetCDF"
] | 5c5bcfacc1111ccda44317c83774618e00157651416dcc2dbbd9f17bcb78318d |
# This script is a modified implementation of an official NEST example
# that is able to run as task on the Unified Portal,
# see www.nest-simulator.org
#
# Contributors:
# Johanna Senk (j.senk@fz-juelich.de)
# Long Phan (l.phan@fz-juelich.de
#
# ###################################################################... | jakobj/UP-Tasks | NEST/tsodyks_depressing_task/tsodyks_depressing_task.py | Python | gpl-2.0 | 6,859 | [
"NEURON"
] | 708f54c5c32b9fd404db1e1c1d15f5334beaff3f786e0d0d6748a14f300e2ebf |
"""
This test verifies that vtk's Xdmf reader and writer work in general.
It generates a variety of small data sets, writing each one
to and reading it from an xdmf file and compares the read in
generated result with the read in result and passes if each
closely matches.
"""
import os
import sys
import vtk
hasresource... | berendkleinhaneveld/VTK | IO/Xdmf3/Testing/Python/VToXLoop.py | Python | bsd-3-clause | 11,902 | [
"VTK"
] | 8418cedf190212e45ccd678328ede5e72c7c2f7e6eb03703ea23396342b808f7 |
import os, sys, math, string, time
import numpy as np
m = 100; # grid size
g = 9.8; # gravitational constant
dt = 0.01; # hardwired timestep
dx = 1.0;
dy = 1.0;
timesteps = 20; # drop interval
def droplet(height, width):
'''
DROPLET ... | songweijia/hdfsrs | experiments/waterwave/javaclient/newGenWaveData.py | Python | apache-2.0 | 4,123 | [
"Gaussian"
] | a796cffad91d2e1089e54db61e5ea1274992f6aa4b5b5435cf20efc0bb82e418 |
import numpy as np
def LU(A):
r"""Factor a square matrix by Gaussian elimination.
The argument A should be a square matrix (an m-by-m numpy array).
The outputs L and U are also m-by-m. L is lower-triangular with
unit diagonal entries and U is strictly upper-triangular.
This impl... | ketch/rock-solid-code-demo | factor.py | Python | bsd-2-clause | 1,469 | [
"Gaussian"
] | a1c80f273aefdcc771e05ae6fdf4966a5f02eec66e526d8486309bef63af6746 |
'''
Created on 9/02/2010
@author: brian
'''
import unittest
import os
from Tkinter import Tk
from parser import fill_tree
# from scipysim.gui.codegroup import make_tree
class CodeGroupTests(unittest.TestCase): # TODO
def setUp( self ):
src_dir = os.path.normpath( __file__ + '../../../' )
sel... | mm318/scipysim-nogui | scipysim_tests/test_core_parser.py | Python | gpl-3.0 | 893 | [
"Brian"
] | 31a6f4dae86724948f7542449c9161ea1c7d760ddd4e60b0ea86c7605b9be731 |
from PyQt4 import QtCore
from PyQt4 import QtGui
from Action import Behavior
from Action import LED
from Action import Motion
from Action import ReplaceableSpeech
from Action import Speech
from Action import Stiffness
from Action import Wait
from EmpathyMotionList import EmpathyMotionList
from EmpathyRandomButton impor... | mattBrzezinski/Hydrogen | robot-controller/Study/EmpathyGUI.py | Python | mit | 51,980 | [
"exciting"
] | 52aada5494cf5529dea21b8f5893372550374b8a92b0f85e8bb37475884399d0 |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | fedepad/espressopp | src/esutil/RNG.py | Python | gpl-3.0 | 1,753 | [
"ESPResSo"
] | 2f9da1f9c879048352c057f71fcefe6bb06e8be2d5a1937ecfeff57ed35d2208 |
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