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# -*- coding: utf-8 -*-
# Coh-Metrix-Dementia - Automatic text analysis and classification for dementia.
# Copyright (C) 2014 Andre Luiz Verucci da Cunha
#
# This program is free software: you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by the Free
# Software F... | andrecunha/coh-metrix-dementia | coh/scripts/tokenize_plnbr.py | Python | gpl-3.0 | 3,185 | [
"FEFF"
] | 839412118e9712c7d4ea55956f01be664e93503cdbd74e008b30f1e25d323ddc |
# -*- coding: utf-8 -*-
# Copyright 2022 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or... | googleapis/python-area120-tables | tests/unit/gapic/tables_v1alpha1/test_tables_service.py | Python | apache-2.0 | 139,821 | [
"Octopus"
] | 36e9b07641659b46c5097cd74acc7a043267e0e1fce2cad5919caf6e47718739 |
class ElementParserSection:
import re
def __init__(self):
self._p = {
'DBCSR': dict(),
'CP2K': dict(),
'GLOBAL': dict(),
'ENERGY': dict()
}
self._k = ''
self._v = ''
# returns true if parser can parse ... | dev-zero/cp2k-tools | cp2k_tools/parser/output.py | Python | apache-2.0 | 9,154 | [
"CP2K"
] | 1241b75a3782519d467af93d1b3712bb4907cfc6dfe382317379cb57611d8f72 |
#!/usr/bin/env python
#
# Author: Qiming Sun <osirpt.sun@gmail.com>
#
'''
CASCI/CASSCF excited state with mcscf.state_specific_ decorator
'''
from pyscf import gto, scf, mcscf
mol = gto.M(
atom = [
['O', ( 0., 0. , 0. )],
['H', ( 0., -0.757, 0.587)],
['H', ( 0., 0.757 , 0.587)],],
... | gkc1000/pyscf | examples/mcscf/15-state_specific.py | Python | apache-2.0 | 910 | [
"PySCF"
] | be03d7ca6731395a386e3c15c8da8e384f9d77ed0ea4ad53c3c3952a84cab753 |
#!/usr/bin/env python
import os
from datetime import datetime, timedelta
import logging
import json
import argparse
import numpy
os.environ['GDAL_NETCDF_BOTTOMUP'] = 'NO'
import rasterio
from rasterio._io import RasterReader
logger = logging.getLogger()
DATE_FORMAT = '%Y%m%d'
def get_cities():
"""
Loads... | azavea/nex2json-ingest | chunker/nex2json.py | Python | apache-2.0 | 4,006 | [
"NetCDF"
] | c768b8a0d8aaacd74a8f835b32b510c9a991651bcbe2f3c83950b6f137970ccf |
#!/usr/bin/env python
##################################################
## DEPENDENCIES
import sys
import os
import os.path
try:
import builtins as builtin
except ImportError:
import __builtin__ as builtin
from os.path import getmtime, exists
import time
import types
from Cheetah.Version import MinCompatib... | MOA-2011/e2openplugin-OpenWebif | plugin/controllers/views/web/mediaplayerlist.py | Python | gpl-2.0 | 5,786 | [
"VisIt"
] | 1921a0d9770916557e10b3ec46591630ed3990c30ccc1dfb21b279fdb8c1442c |
"""This module contains utility functions and classes used in the package."""
import unittest
from selenium import webdriver
from selenium.common.exceptions import NoSuchElementException
from tests import settings
class SeleniumTestCase(unittest.TestCase):
"""A test case with a WebDriver and helper functions.""... | FellowshipofIntentionalCommunity/website-tests | tests/utils.py | Python | gpl-3.0 | 3,958 | [
"VisIt"
] | b3e0e42087f1091925f97bdd0e631b9e2d6891a1c854d32f301cda5d7e0ebd9f |
# NOTE: This example uses the next generation Twilio helper library - for more
# information on how to download and install this version, visit
# https://www.twilio.com/docs/libraries/python
import os
from twilio.rest import Client
# Your Account Sid and Auth Token from twilio.com/user/account
# To set up environmenta... | TwilioDevEd/api-snippets | notifications/rest/services/list-service/list-service.7.x.py | Python | mit | 533 | [
"VisIt"
] | 5d7a0b598921fd4f3e25abce6eaad94e57d1659c0f1bc8221828de32b2c12a88 |
""" Tools for plotting and publishing power system simulations and analysis results.
(c) 2015 Juan Manuel Mauricio
https://www.packtpub.com/books/content/plotting-geographical-data-using-basemap
"""
from __future__ import division, print_function
import numpy as np
import scipy.linalg
import matplotlib.pyplot as p... | jmmauricio/pypstools | build/lib.linux-x86_64-2.7/pypstools/publisher.py | Python | gpl-3.0 | 55,611 | [
"Gaussian"
] | 95ebbc53a07dd03d95e6bf708b2e170f3fffa747843440bac3f83cfb634458cb |
#!/usr/bin/env python
# kf.py - Implementation of a Python interface to read and write KF files.
# This is an implementation that uses the KF utilities to do the actual work,
# so you need a working ADF installation.
#
# Copyright (C) 2006-2008 by Scientific Computing and Modelling NV.
# For support, c... | twilsonco/CPGobbler | kf.py | Python | gpl-3.0 | 12,472 | [
"ADF"
] | 10c2c5774d0d9e410c0cc195f6f741ad46daeb66f04d65b39b0ca9274116722c |
# $Id$
#
# Copyright (C) 2002-2008 greg Landrum and Rational Discovery LLC
#
# @@ All Rights Reserved @@
# This file is part of the RDKit.
# The contents are covered by the terms of the BSD license
# which is included in the file license.txt, found at the root
# of the RDKit source tree.
#
""" generation of 2D ph... | rdkit/rdkit-orig | rdkit/Chem/Pharm2D/Generate.py | Python | bsd-3-clause | 4,719 | [
"RDKit"
] | bd076b3db6a73aa0d9473905318079def2748bd78914c409468cc550102a6621 |
#! /usr/bin/env python3
# -*- coding: utf-8 -*-
# Copyright 2020 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless requ... | googleapis/python-logging | scripts/fixup_logging_v2_keywords.py | Python | apache-2.0 | 7,328 | [
"VisIt"
] | 83f01bd6816cd1aba83efabab73e9cfc5281298eb3001df71dc7fb3761e312dc |
# BridgeDB i18n strings & helper routines. The string should go into pootle
import os
import gettext
def getLang(lang, localedir=os.path.expanduser("~") + "/share/locale"):
"""Return the Translation instance for a given language. If no Translation
instance is found, return the one for 'en'
"""
retu... | wfn/bridgedb | lib/bridgedb/I18n.py | Python | bsd-3-clause | 3,278 | [
"VisIt"
] | 22f02e0e2f3926d0abf6433ffd624749047e5c5d615d8c0267e67b42bc76c823 |
"""
Gaussianity Tests
-----------------
Figure 4.7.
The results of the Anderson-Darling test, the Kolmogorov-Smirnov test, and the
Shapiro-Wilk test when applied to a sample of 10,000 values drawn from a normal
distribution (upper panel) and from a combination of two Gaussian distributions
(lower panel).
The function... | kcavagnolo/astroML | book_figures/chapter4/fig_anderson_darling.py | Python | bsd-2-clause | 3,714 | [
"Gaussian"
] | a1d55de122319e51969a7e6ccd7f9cd7fe78dc7f0a00937034074345a99d6cae |
# encoding: utf-8
import datetime
from south.db import db
from south.v2 import SchemaMigration
from django.db import models
class Migration(SchemaMigration):
def forwards(self, orm):
# Adding field 'IndicatorPart.data'
db.add_column('profiles_indicatorpart', 'data', self.gf('django.db.mod... | ProvidencePlan/Profiles | communityprofiles/profiles/oldmigrations/0025_auto__add_field_indicatorpart_data.py | Python | mit | 13,078 | [
"MOE"
] | 3577ef40ff9557e14b74121c8b979b92edbbd3afe54af6ac9ca35130a01a6b36 |
""":mod:`wand.image` --- Image objects
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Opens and manipulates images. Image objects can be used in :keyword:`with`
statement, and these resources will be automatically managed (even if any
error happened)::
with Image(filename='pikachu.png') as i:
print('width =', i.w... | dahlia/wand | wand/image.py | Python | mit | 421,794 | [
"Gaussian"
] | 77df159f12ded7acd834b5068c4ee7cd97cfa79894c72d53933fbc0590fc30f5 |
#!/usr/bin/env python
import pylink
from pylink import TaggedAttribute as TA
def __do_it_do_it_now(self):
return self.whimsy_coefficient
ex = {
'whimsy_coefficient': TA(42,
datasheet="hitchhiker's guide to the galaxy",
author="Douglas Adams"),
'wa... | harrison-caudill/pylink | examples/basic.py | Python | bsd-3-clause | 1,983 | [
"Galaxy"
] | 22136ba7df6101e3955e634e737112683235d95c76b96101520b0bda117cedf3 |
# Collection of our favorite functional idioms
# Note in many cases you'll see normal python functions
# with the arguments reversed. Have a look at
# http://functionaltalks.org/2013/05/27/brian-lonsdorf-hey-underscore-youre-doing-it-wrong/
# to understand why
from __future__ import absolute_import
from __future__ imp... | dilgerma/shipwright | shipwright/fn.py | Python | apache-2.0 | 6,363 | [
"Brian"
] | 9143f1cadb4ad567c56d799347eb7eee107fbcdaa45a3b6b81a33653f6752fa8 |
import pytest
from TwitterClient import TwitterClient
class TestTwitterClient:
def test_get_matplotlib_tweets(self):
"""
Check if we get the expected results for bioconductor.
"""
term = "matplotlib"
client = TwitterClient()
results = client.get_tweets(term)
... | sentimental-research/twitter_client | TwitterClient/test/test_twitter_client.py | Python | apache-2.0 | 981 | [
"Bioconductor"
] | 4b6bb75b51a58e6e751d6b7751523f78f08328d33b8f7c42d785b9c9cb629762 |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | BackupTheBerlios/espressopp | src/ParallelTempering.py | Python | gpl-3.0 | 5,800 | [
"ESPResSo"
] | a2175b1207370d7cc3573224eaa5930df079504a0df929aa405a4ebcc2a6e803 |
""" Python test discovery, setup and run of test functions. """
import re
import fnmatch
import functools
import py
import inspect
import types
import sys
import pytest
from _pytest.mark import MarkDecorator, MarkerError
from py._code.code import TerminalRepr
try:
import enum
except ImportError: # pragma: no cove... | gabrielcnr/pytest | _pytest/python.py | Python | mit | 88,828 | [
"VisIt"
] | d90622da6909e464284ce33b219315572fb4644c368d14b1cf2f31493837e3ae |
# TODO: To be refactored into parallel shared memory lang,
# where you plugin in the parallel shared memory language specific codegen
import logging
import raco.scheme as scheme
from raco import algebra
from raco import expression
from raco import rules
from raco.algebra import gensym
from raco.backends import Algeb... | uwescience/raco | raco/backends/radish/radish.py | Python | bsd-3-clause | 93,176 | [
"VisIt"
] | bebce979ee88c4ede68f4e266ff1d1c6be182c1933857c7a0502e0c1f1b18846 |
#!/usr/bin/env python
#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#
#
# Name: generate_gaussian_samples.py
#
# Author: Constantin Weisser (weisser@mit.edu)
#
# Purpose: This is a python script to write a file containing 10000 data points
# sampled from a 2D Gaussian
#
#-#-... | weissercn/MLTools | Dalitz/gaussian_samples/higher_dimensional_gauss/generate_gaussian_samples.py | Python | mit | 2,202 | [
"Gaussian"
] | 189b1007d5df9b3b3511f31874710ee64e45074d545c0bb8f674fa8223fba3b0 |
# -*- coding: utf-8 -*-
import base64
import datetime
import json
import time
import mock
from nose.tools import eq_, ok_
from nose.plugins.attrib import attr
from pyquery import PyQuery as pq
from urlparse import urlparse
from django.conf import settings
from django.contrib.sites.models import Site
from django.core... | davehunt/kuma | kuma/wiki/tests/test_views.py | Python | mpl-2.0 | 166,620 | [
"VisIt"
] | 7e5138a73db059d22f8cf14652d810184a356e39fc72bb24e33f42265b90e822 |
#####################################################################################################################
# more_nodes: This module implements several new nodes and helper functions. It is part of the Cuicuilco framework. #
# ... | AlbertoEsc/cuicuilco | more_nodes.py | Python | apache-2.0 | 133,945 | [
"Gaussian"
] | 73afe4428efc57f475d644dbd2ea363e98be4f7bfdfc502aa419a372f2df1951 |
"""Code for checking for local names and superfluous import statements.
This code provides searches for local symbols in the AST, assignments and such
things.
"""
# This file is part of the Snakefood open source package.
# See http://furius.ca/snakefood/ for licensing details.
# stdlib imports
import compiler
__all_... | jd23/py-deps | lib/python/snakefood/local.py | Python | gpl-2.0 | 4,041 | [
"VisIt"
] | 1a586be45a188d22a6444a790f8a713b5dc64c062acbf10859e77424154fdcaa |
########################################################################
# $HeadURL$
# Author : Andrei Tsaregorodtsev
########################################################################
"""
Utilities for managing DIRAC configuration:
getCEsFromCS
getUnusedGridCEs
getUnusedGridSEs
getSiteUpdates
get... | coberger/DIRAC | ConfigurationSystem/Client/Utilities.py | Python | gpl-3.0 | 19,473 | [
"DIRAC"
] | 711cc0c2b24d5c049aa0bf2e724cb500c30a2a011b80ff17686a91fb6a295086 |
#!/usr/bin/env python
# Author: Andrew Jewett (jewett.aij at g mail)
# License: MIT License (See LICENSE.md)
# Copyright (c) 2013
# All rights reserved.
"""
lttree_check.py
The original template file format supports any variable types or file names.
However if you plan to process template files using lttree.py to c... | jewettaij/moltemplate | moltemplate/lttree_check.py | Python | mit | 146,702 | [
"LAMMPS"
] | fe5747db53f89999ea9966caeb46456133cae16c1eeeebb50a007b8e44762ed7 |
# Copyright (C) 2002, Thomas Hamelryck (thamelry@binf.ku.dk)
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""Chain class, used in Structure objects."""
from Bio.PDB.Entity import Entity
class... | BlogomaticProject/Blogomatic | opt/blog-o-matic/usr/lib/python/Bio/PDB/Chain.py | Python | gpl-2.0 | 3,677 | [
"Biopython"
] | 608f74870850a27ef4af12c5f91c937e4f5fda27a58b10aaad7e8fb694f7e70e |
# _*_ coding: utf-8 _*_
#
# Psybernetics 2015
# Original code from Kademlia Copyright (c) 2014 Brian Muller
# MIT License
#
"""
See the corresponding file at synchrony/resources/peers.py for
the process messages go through before being received by
their counterpart methods in the protocol class.
This namespace and... | Psybernetics/Synchrony | synchrony/controllers/dht.py | Python | mit | 111,935 | [
"Brian",
"VisIt"
] | d5e178f39feee9d3dd22c68bb9f03832c0122acf13557c91577100a8c89f4679 |
import sys
import numpy as np
from PyQt4.QtGui import QIntValidator, QDoubleValidator, QApplication, QSizePolicy
from PyMca5.PyMcaIO import specfilewrapper as specfile
from orangewidget import gui
from orangewidget.settings import Setting
from oasys.widgets import widget
try:
from orangecontrib.xoppy.util.xoppy_ca... | srio/Orange-XOPPY | devel/json/xfh.py | Python | bsd-2-clause | 8,552 | [
"CRYSTAL"
] | 8082e46c8f84ad26edc48f511ec853c444b2b61e0aff786a299a3559bc35b000 |
import os
import subprocess
import re
import math
import click
from dgl import library_constants
@click.group()
def cli():
pass
def doench(sequence):
"""
Based on original Doench scoring algorithm from
Doench et al 2014.
"""
score = getattr(library_constants, INTERCEPT)
# get the GC count... | DeskGen/dgcli | library_design/dgl/score_guides.py | Python | gpl-2.0 | 10,954 | [
"Bowtie"
] | 31a1640b1e0dc79493451381d20351ab2deef83dc3202ba758a29cd72b5dd4e1 |
# -*- encoding: utf-8 -*-
# Copyright (c) 2012 Oliver Beckstein <orbeckst@gmail.com>
# Released under the GNU Public License 3 (or higher, your choice)
# See the file COPYING for details.
"""
Hydrogen bond analysis
======================
Analysis of hydrogen bonds using :class:`gromacs.tools.G_hbond`.
Example
------... | pslacerda/GromacsWrapper | gromacs/analysis/plugins/hbonds.py | Python | gpl-3.0 | 11,494 | [
"Gromacs"
] | 16594a2c27d67da9adfdcfe38edc182a33a2b9e6e7d44f86ce5080f8874bfe9d |
"""MSMBuilder: Statistical models for Biomolecular Dynamics
"""
from __future__ import print_function, absolute_import
DOCLINES = __doc__.split("\n")
import os
import sys
import glob
import traceback
import numpy as np
from os.path import join as pjoin
from setuptools import setup, Extension, find_packages
try:
... | stephenliu1989/msmbuilder | setup.py | Python | lgpl-2.1 | 7,304 | [
"Gaussian",
"MDTraj"
] | 127288e58aca574cb68051fdf1ed27aac61e52f1a5b1e7cbc02de3ea16a69a12 |
import numpy as np
import os
import pandas as pd
import time
import math
from itertools import chain
import bifacial_radiance
from dask.distributed import Client
from math import sin, cos, radians
# Run simulation using the given timestamp
def simulate_single(idx=None, test_folder_fmt=None, weather_file=None):
... | NREL/bifacial_radiance | bifacial_radiance/HPCScripts/Other Examples (unorganized)/compile_B.py | Python | bsd-3-clause | 5,141 | [
"EPW"
] | 2414033751a790e211e84d654f7e9b616005480eaf0208e65528b0476d7a0da9 |
import doublyPeriodic
import numpy as np; from numpy import pi
import time
class model(doublyPeriodic.numerics):
def __init__(
self,
name = "hydrostaticWaveEquationExample",
# Grid parameters
nx = 128,
Lx = 2.0*pi,
ny = None,
Ly ... | glwagner/py2Periodic | build/lib/py2Periodic/hydrostaticWavesInXY.py | Python | mit | 10,836 | [
"Gaussian"
] | 70e3621171ffe5f3244ab9cd0a7e6a6e787d5a94fd1701d670edc2a119c73e0f |
"""
General linear models
--------------------
"""
import numpy as np
from nipy.fixes.scipy.stats.models import family
from nipy.fixes.scipy.stats.models.regression import WLSModel
class Model(WLSModel):
niter = 10
def __init__(self, design, family=family.Gaussian()):
self.family = family
s... | yarikoptic/NiPy-OLD | nipy/fixes/scipy/stats/models/glm.py | Python | bsd-3-clause | 2,567 | [
"Gaussian"
] | 977265f7f203c98288b99db1dc8bd94cfbb3fa6807cfc6fa15eaa804d57ed264 |
"""
Displays Agg images in the browser, with interactivity
"""
from __future__ import (absolute_import, division, print_function,
unicode_literals)
# The WebAgg backend is divided into two modules:
#
# - `backend_webagg_core.py` contains code necessary to embed a WebAgg
# plot inside of a web... | jonyroda97/redbot-amigosprovaveis | lib/matplotlib/backends/backend_webagg.py | Python | gpl-3.0 | 11,576 | [
"VisIt"
] | 70b9c2876bf1c68e42a0569b118dc066476ca4adf5c21f4299d939b6541bddbb |
# Autodetecting setup.py script for building the Python extensions
#
__version__ = "$Revision$"
import sys, os, imp, re, optparse
from glob import glob
from platform import machine as platform_machine
import sysconfig
from distutils import log
from distutils import text_file
from distutils.errors import *
from distu... | jlspyaozhongkai/Uter | third_party_backup/Python-2.7.9/setup.py | Python | gpl-3.0 | 97,660 | [
"VisIt"
] | 3d335024e7bcf511ce5f9b4da3594198d502765534bc81e34509d852ef32c96b |
from math import sqrt, log
class Node:
""" A node in the game tree. Note wins is always from the viewpoint of playerJustMoved.
Crashes if state not specified.
"""
def __init__(self, move = None, parent = None, state = None):
self.move = move # the move that got us to this node - "None" for... | crainiarc/poker-ai-planner | agents/mcts/node.py | Python | mit | 2,188 | [
"VisIt"
] | c560ae4bd802f4ae42becfb4f4163429e3042545ff1be6fe733aa333ffaafc31 |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2000-2007 Donald N. Allingham
# Copyright (C) 2007-2008 Brian G. Matherly
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; ... | Forage/Gramps | gramps/plugins/quickview/siblings.py | Python | gpl-2.0 | 2,654 | [
"Brian"
] | 9ef6fe95efae68d3c200e051570ce467efaca975d54f4afe644fb9b556a50a7f |
import numpy as np
import json
import os
from tentacle import Tentacle
from mantle import Mantle
#TODO: color mappings
class OctopusLayout:
''' An octopus layout represents the morphology and spatial distribution of its chromatophores'''
def __init__(self, mantle_radius=0.5, tentacle_length=3, pixels_per_str... | TheGentlemanOctopus/thegentlemanoctopus | octopus_code/core/octopus/layouts/octopusLayout.py | Python | gpl-3.0 | 4,959 | [
"Octopus"
] | 54d862aa313071679be4f4f9ecf0671150bb19963a47b4aa7fe0adb0c2d2ff20 |
import pytest
from mock import MagicMock
from DIRAC.ConfigurationSystem.Client.Helpers.Resources import getDIRACPlatform, getCompatiblePlatforms
mockGCReply = MagicMock()
@pytest.mark.parametrize(
"mockGCReplyInput, requested, expectedRes, expectedValue",
[
({"OK": False, "Message": "error"}, "plat... | DIRACGrid/DIRAC | src/DIRAC/ConfigurationSystem/Client/Helpers/test/Test_Helpers.py | Python | gpl-3.0 | 3,315 | [
"DIRAC"
] | 19e24665652b0640d22849fe5f269e214669545950f8685931062688e103f542 |
"""
Course Outline page in Studio.
"""
from bok_choy.javascript import js_defined, wait_for_js # lint-amnesty, pylint: disable=unused-import
from bok_choy.page_object import PageObject
from bok_choy.promise import EmptyPromise
from selenium.webdriver.support.ui import Select
from common.test.acceptance.pages.studio... | stvstnfrd/edx-platform | common/test/acceptance/pages/studio/overview.py | Python | agpl-3.0 | 13,335 | [
"VisIt"
] | 9e857fbf26a06a5e40b36852f31882b5baf0119f79c2e6a99aac4999314c946d |
# -*- coding: utf-8 -*-
"""
================================================================
Continuous and analytical diffusion signal modelling with MAPMRI
================================================================
We show how to model the diffusion signal as a linear combination
of continuous functions from t... | villalonreina/dipy | doc/examples/reconst_mapmri.py | Python | bsd-3-clause | 17,918 | [
"Gaussian"
] | 032cd28804872f653bee7d11edb1326aa1999ba88bef8ea3839cf1131634cd40 |
import numpy as np
from moha.system.integral.differential import D
from moha.system.integral.nuclear_attraction import E
def Lxyz(a,lmn1,A,b,lmn2,B):
''' Evaluates kinetic energy integral between two Gaussians
Returns a float.
a: orbital exponent on Gaussian 'a' (e.g. alpha in the text)
b... | fhqgfss/MoHa | moha/system/integral/angular_momentum.py | Python | mit | 1,800 | [
"Gaussian"
] | 71b5c3eca1c7ef49fabd50c171241694cccba0dde0f2a9c747d0fa29c1193710 |
from collections import defaultdict, namedtuple
class DiGraph(object):
"""Implementation of directed graph"""
def __init__(self):
self._nodes = set()
self._edges = []
# N -> Nodes N2 with a edge (N -> N2)
self._nodes_succ = {}
# N -> Nodes N2 with a edge (N2 -> N)
... | kexplo/miasm | miasm2/core/graph.py | Python | gpl-2.0 | 17,238 | [
"VisIt"
] | 8df5d30f4b735a8dc3cb964da49025e646c1f33a2df3ebdaeb55757c600ba7ca |
import os
import re
from glob import glob
from os import path
import numpy as np
from netCDF4 import Dataset
from pyproj import Proj
from pyproj import transform
from shyft import api
from .. import interfaces
from .time_conversion import convert_netcdf_time
class WRFDataRepositoryError(Exception):
pass
class ... | felixmatt/shyft | shyft/repository/netcdf/wrf_data_repository.py | Python | lgpl-3.0 | 17,782 | [
"NetCDF"
] | 15083f115ec45278a6c8139a08050a80a019091c393801e6fdcdcf214811b249 |
#!/usr/bin/env python
"""Automatically install required tools and data to run bcbio-nextgen pipelines.
This automates the steps required for installation and setup to make it
easier to get started with bcbio-nextgen. The defaults provide data files
for human variant calling.
Requires: git, Python 3.x, Python 2.7 or a... | verdurin/bcbio-nextgen | scripts/bcbio_nextgen_install.py | Python | mit | 13,026 | [
"BWA",
"Biopython",
"Bowtie",
"Galaxy",
"pysam"
] | bc7b3e439d6128a1d52689d58bf1bea604d337c232286d2785144e7ad6b5e085 |
# -*- coding: utf-8 -*-
import logging
import re
import traceback
import os
import time
import bpy
from bpy.types import Operator
from bpy.types import OperatorFileListElement
from bpy_extras.io_utils import ImportHelper, ExportHelper
from mmd_tools import register_wrap
from mmd_tools import auto_scene_setup
from mm... | powroupi/blender_mmd_tools | mmd_tools/operators/fileio.py | Python | gpl-3.0 | 26,442 | [
"VMD"
] | 1cd2ca60c41ce7b5669a748c389b8106f5ee7c62572368a181eeab39e81be06a |
"""
This is a DIRAC WMS administrator interface.
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
__RCSID__ = "$Id$"
import six
from DIRAC import S_OK, S_ERROR
from DIRAC.Core.DISET.RequestHandler import RequestHandler
from DIRAC.ConfigurationSystem.Cli... | yujikato/DIRAC | src/DIRAC/WorkloadManagementSystem/Service/WMSAdministratorHandler.py | Python | gpl-3.0 | 8,011 | [
"DIRAC"
] | c6f54c6d8fc8c65954c540b19d518a5bfc2c14863f5879f9c5f19caa8b109ae8 |
"""
Represents an optical Gaussian source.
"""
class SourceGaussian(object):
def __init__(self, sigma_x, sigma_y, sigma_x_prime, sigma_y_prime, energy):
self._sigma_x = sigma_x
self._sigma_y = sigma_y
self._sigma_x_prime = sigma_x_prime
self._sigma_y_prime = sigma_y_prime
se... | srio/BeamlineComponents | Source/SourceGaussian.py | Python | mit | 1,318 | [
"Gaussian"
] | 86b6e94932385fe9ada54a10d3c51096371f001ff4e096e8ac45e91a22d5a35b |
from __future__ import unicode_literals
import os
import warnings
import yaml
__author__ = "Pymatgen Development Team"
__email__ ="pymatgen@googlegroups.com"
__maintainer__ = "Shyue Ping Ong"
__maintainer_email__ ="shyuep@gmail.com"
__version__ = "2017.6.8"
SETTINGS_FILE = os.path.join(os.path.expanduser("~"), ".pm... | xhqu1981/pymatgen | pymatgen/__init__.py | Python | mit | 2,742 | [
"CRYSTAL",
"pymatgen"
] | c4cd1f3fd9a63cd73743c0e589c777039faefe5f858b35c79d4d6c2335498bc9 |
# -*- coding: utf-8 -*-
from collections import defaultdict
import numpy as np
from numpy import hstack, vstack
from numpy.linalg import inv, svd
import scipy
import scipy.stats
from statsmodels.iolib.summary import Summary
from statsmodels.iolib.table import SimpleTable
from statsmodels.tools.decorators import cache... | jseabold/statsmodels | statsmodels/tsa/vector_ar/vecm.py | Python | bsd-3-clause | 92,691 | [
"Gaussian"
] | edaae86519960e6f38183a206ee5c9b2ad9a76af0c1c551e78344b96b390525e |
# $HeadURL$
__RCSID__ = "$Id$"
import datetime, time
import types
import threading
import random
from DIRAC.Core.Base.DB import DB
from DIRAC import S_OK, S_ERROR, gMonitor, gConfig
from DIRAC.Core.Utilities import List, ThreadSafe, Time, DEncode
from DIRAC.AccountingSystem.private.TypeLoader import TypeLoader
from DI... | miloszz/DIRAC | AccountingSystem/DB/AccountingDB.py | Python | gpl-3.0 | 70,579 | [
"DIRAC"
] | 7605c2fae3dfda46fc872ada18f9eeb964322f549ed32ebb950a280047e93f79 |
#!/usr/bin/env python
# Copyright 2020 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# https://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or ... | googleads/google-ads-python | examples/remarketing/add_combined_rule_user_list.py | Python | apache-2.0 | 6,213 | [
"VisIt"
] | d44de6f1ba0af37b9aaa103491a8550ffbbec2daffacc0e64385df8ed06ee213 |
#!/usr/bin/env python
# Copyright 2014-2018 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# U... | gkc1000/pyscf | pyscf/pbc/gto/ecp.py | Python | apache-2.0 | 2,545 | [
"PySCF"
] | b58610b1ebe4b6b24cc7c560a1ea2fff65c18f3b4e5b22f5ca31a99bd4da0d41 |
# This file is part of the myhdl library, a Python package for using
# Python as a Hardware Description Language.
#
# Copyright (C) 2003-2012 Jan Decaluwe
#
# The myhdl library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public License as
# published by t... | cordoval/myhdl-python | myhdl/conversion/_toVerilog.py | Python | lgpl-2.1 | 47,716 | [
"VisIt"
] | 43cb7a952fdea3892b88653b545d05468da9ddc6e193744c87d8507ac57eff15 |
##############################################################################
# MDTraj: A Python Library for Loading, Saving, and Manipulating
# Molecular Dynamics Trajectories.
# Copyright 2012-2013 Stanford University and the Authors
#
# Authors: Robert McGibbon
# Contributors:
#
# MDTraj is free software: y... | mpharrigan/mdtraj | mdtraj/tests/test_xtc.py | Python | lgpl-2.1 | 8,888 | [
"MDTraj"
] | 9718b32841e5ebea174e12ce9131376dfa8ddaffd2021c99c3869bc0b29c6fda |
"""
File: GDA.py
Author: Hong-Wei Ng
Email: lightalchemist@gmail.com
Github: https://github.com/lightalchemist
Description: Implements Gaussian Discriminant Analysis classifier.
This is essentially LDA (Linear Discriminant Analysis),
but we train it using maximum likelihood
instead of the usual method that involves so... | lightalchemist/ML-algorithms | classifiers/GDA.py | Python | mit | 2,532 | [
"Gaussian"
] | 0a5dbeb471c74ed554c259a666a4bb30106cf34172d636ad357972854a44213a |
"""
Test the Studio help links.
"""
from unittest import skip
from nose.plugins.attrib import attr
from common.test.acceptance.fixtures.course import XBlockFixtureDesc
from common.test.acceptance.pages.common.auto_auth import AutoAuthPage
from common.test.acceptance.pages.studio.asset_index import AssetIndexPageStud... | Stanford-Online/edx-platform | common/test/acceptance/tests/studio/test_studio_help.py | Python | agpl-3.0 | 42,595 | [
"VisIt"
] | bb8df6a68f41c71408243077594a6c663dc2d7c5a53c19eb8f0bc7aeff209cdb |
from setuptools import setup
import os
import sys
from setuptools.command.test import test as TestCommand
from setuptools import find_packages
try:
from setuptools import setup
except ImportError:
from distutils.core import setup
# create package path
PACKAGE_PATH = os.path.abspath(os.path.join(__fil... | bnord/cosmonet | setup.py | Python | bsd-2-clause | 702 | [
"Brian"
] | ccfe4208d57dfe844251d5b52ec67a5d13a1995d0d5a8778e947823c1b060eb9 |
#!/usr/bin/env python
# coding: utf-8
# # Many-body Hamiltonians, basic linear algebra and Second Quantization
#
# ## Definitions and notations
#
# Before we proceed we need some definitions.
# We will assume that the interacting part of the Hamiltonian
# can be approximated by a two-body interaction.
# This means t... | CompPhysics/ComputationalPhysics2 | doc/LectureNotes/_build/jupyter_execute/basicmanybody.py | Python | cc0-1.0 | 102,505 | [
"DIRAC"
] | 276c4f81de0f226235c3bda8f29b192f09b6860bf9e3d512e21771ad3e42b48d |
"""The starting point for doing anything with mastic. We first need to
load into mastic datastructures and use a feature identifier (here we
use rdkit and is currently the only implementation for feature
identification) to find the relevant features for doing profiling
on. Then we use these to create templates for mole... | salotz/mast | examples/sEH-TPPU/make_seh_tppu_SystemType_pkl.py | Python | mit | 2,063 | [
"RDKit"
] | f6adf9f39e008a6e345894d53d42762da662d0ddd6b021760611ef66b270fc3b |
# coding=utf-8
# (The line above is necessary so that I can use 世界 in the
# *comment* below without Python getting all bent out of shape.)
# Copyright 2007-2009 Google Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may o... | pombredanne/go-deleteme | lib/codereview/codereview.py | Python | bsd-3-clause | 109,168 | [
"VisIt"
] | c48d09428edd280dcc91c467100d6315ee306e4253a9178b0c7f1f513086908b |
#! /bin/env python
# -*- coding: utf-8 -*-
# Copyright [2014] [Kun Yu yukun2005@gmail.com]
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
# http://www.apache.org/licenses/LICEN... | neoyk/pathperf | pathperf.py | Python | apache-2.0 | 22,299 | [
"VisIt"
] | 354ddf1b406c174cfa60460814dba9e102dcf8ab2fede3b6275a874027d7c2e5 |
#!/usr/bin/env python
import pprint
import re
import os, sys
import unittest
sys.path[0:0] = ['.', '..']
from pycparser import c_parser
from pycparser.c_ast import *
from pycparser.c_parser import CParser, Coord, ParseError
_c_parser = c_parser.CParser(
lex_optimize=False,
yacc_debug... | songjiguo/interface-code-generator | tests/test_c_parser.py | Python | bsd-3-clause | 58,765 | [
"MOE",
"VisIt"
] | 3603fa17269dddddd953a67045b223af6aac87d80c0f43c7abc73d4fc88c8d4c |
# Orca
#
# Copyright 2005-2009 Sun Microsystems Inc.
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any later version.
#
# This... | ruibarreira/linuxtrail | usr/lib/python3/dist-packages/orca/scripts/apps/soffice/formatting.py | Python | gpl-3.0 | 5,135 | [
"ORCA"
] | ac52a43fc3c0744eeab2b9dc640cf284b9922d936ce668c87facd1317b147fb0 |
# -*- coding: utf-8 -*-
# pylint: disable=E1103,C0103
"""
Copyright 2013-2014 Olivier Cortès <oc@1flow.io>
This file is part of the 1flow project.
1flow is free software: you can redistribute it and/or modify
it under the terms of the GNU Affero General Public License as
published by the Free Soft... | EliotBerriot/1flow | oneflow/core/tests/test_models.py | Python | agpl-3.0 | 41,593 | [
"Galaxy"
] | a57e1f059c7badaae90c8ed189889148454e6edf22af93349c6c084c5366eb89 |
#!/usr/bin/python -u
import sys, os, argparse, commands
import logging
opencgaHome = "";
samtoolsCmd = "";
hpgbamCmd = "";
hpgvarvcfCmd = "";
hpgvarvcfConfig = "";
tabixCmd = "";
tabixbgzipCmd = "";
logging.basicConfig(level=logging.DEBUG)
#Functions
def checkGcsaHome():
try:
global opencgaHome
... | kalyanreddyemani/opencga | opencga-app/build/tools/indexer/indexerManager.py | Python | apache-2.0 | 4,036 | [
"BWA"
] | ce6b4f1d1deccfd07c45275c8729f0288880af801fa64b02aa5d3092dcd96e00 |
'''
computes an unsupervised combination of multiple kernels
Author : Akhil P M
Kernel types
1. Arc cosine
2. Gaussian
3. Polynomial
4. Sigmoid
'''
from settings import *
def compute_J(N, theta):
if N == 0:
return np.pi - theta
elif N == 1:
return np.sin(theta) + (np.pi - theta) * np.cos(theta)
elif ... | akhilpm/Masters-Project | UMKL/u_mkl.py | Python | mit | 4,062 | [
"Gaussian"
] | 1501973d18b6bd69f3305d8f0d6ddb36c20580acc1bfcff758b544eb4a859fb9 |
from django.db import models, transaction, IntegrityError
from django.db.models import Count
from autoslug import AutoSlugField
from courselib.slugs import make_slug
from django.conf import settings
import datetime, urllib.parse, decimal
from django.urls import reverse
from django.core.exceptions import ValidationError... | sfu-fas/coursys | coredata/models.py | Python | gpl-3.0 | 79,959 | [
"VisIt"
] | 75a81e675fa346a093b95f14df8aa581f4971274f0e8ae1c973aa0ef5926fdbc |
# -*- coding: utf-8 -*-
# vi:si:et:sw=4:sts=4:ts=4
##
## Copyright (C) 2006 Async Open Source <http://www.async.com.br>
## All rights reserved
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU General Public License as published by
## the Free Software Foundati... | andrebellafronte/stoq | stoqlib/lib/introspection.py | Python | gpl-2.0 | 2,624 | [
"VisIt"
] | 4f54bbf6d93112da90dc21d0305a4f44b679be7627b441455a27c4688f893101 |
#!/usr/bin/env python3
#
# Copyright (c) 2012 Brian Yi ZHANG <brianlions at gmail dot com>
#
# This file is part of pynebula.
#
# pynebula is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of th... | brianlions/python-nebula | nebula/log.py | Python | gpl-3.0 | 13,537 | [
"Brian"
] | 320f92c81af399f79776db3d2edd0f4f9423deed9fb3d5236968ab77aefa5842 |
#Cancer Sim
from numpy import *
import scipy as sp
import pylab as py
import math
import matplotlib.cm as cm
import matplotlib.colors as colors
import cPickle as pickle
from scipy.spatial.distance import euclidean
from math import pow
from scipy.spatial import Delaunay
#from scipy.spatial import KDTree
from scipy... | alexalemi/cancersim | code/cancer_new.py | Python | mit | 38,624 | [
"ASE",
"VMD"
] | 64025dd43ab02d866858017fadb163871a90fc0c5943663929d00301334f7b75 |
"""
This test script is adopted from:
https://github.com/numpy/numpy/blob/main/numpy/tests/test_public_api.py
"""
import pkgutil
import types
import importlib
import warnings
import scipy
def check_dir(module, module_name=None):
"""Returns a mapping of all objects with the wrong __module__ attribute."""
... | tylerjereddy/scipy | scipy/_lib/tests/test_public_api.py | Python | bsd-3-clause | 10,446 | [
"NetCDF"
] | b387430c000c56375c63782cd5cedb8a1502bb7aa3427404a38e52be65275023 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import logging
from preggy import expect
from mock import patch
from octopus.limiter.in_memory.per_domain import Limiter as PerDomainInMemoryLimiter
from tests import TestCase
class TestPerDomain(TestCase):
def setUp(self):
super(TestPerDomain, self).setUp(... | heynemann/octopus | tests/limiter/in_memory/test_per_domain.py | Python | mit | 2,842 | [
"Octopus"
] | 519044cc1b09fb4d6e4e98f8e99454360016c54eda9c1ebc11c3cf6603238594 |
# (C) British Crown Copyright 2014, Met Office
#
# This file is part of Iris.
#
# Iris is free software: you can redistribute it and/or modify it under
# the terms of the GNU Lesser General Public License as published by the
# Free Software Foundation, either version 3 of the License, or
# (at your option) any later ve... | scollis/iris | lib/iris/tests/unit/fileformats/netcdf/test_save.py | Python | gpl-3.0 | 2,130 | [
"NetCDF"
] | ed10c2473e5eefc4754a9d945ecdd46c10ab581726429625ab1e6c2ca1ac8b99 |
__author__ = 'Brian K. Jones'
__version__ = (0, 0, 1)
| bkjones/django-taxonomy | taxonomy/__init__.py | Python | bsd-3-clause | 54 | [
"Brian"
] | dcbf5316b8b6311aa7d160793e2ce30e7fdf96d7d4807a1de0a8dceadede7e0e |
"""
Keras backend for QRNNs
=======================
This module implements the Keras backend for QRNNs.
"""
import copy
import logging
import os
import pickle
import numpy as np
from scipy.interpolate import CubicSpline
# Keras Imports
try:
import keras
from keras.models import Sequential, clone_model, Model... | atmtools/typhon | typhon/retrieval/qrnn/backends/keras.py | Python | mit | 30,923 | [
"Gaussian",
"NEURON"
] | d1da1aa2c976e6f9e500ce5d3741bcd6b55e9bbc39f2a695a3d0dd6bc71731a5 |
import discord
from discord.ext import commands
from __main__ import send_cmd_help
from cogs.utils.dataIO import dataIO
import os #Used to create folder at first load.
import random #Used for selecting random catgirls
#Global variables
JSON_mainKey = "catgirls" #Key for JSON files.
JSON_catboyKey = "catboys" #Key cont... | sedruk/Red-DiscordBot | cogs/catgirl.py | Python | gpl-3.0 | 16,724 | [
"MOE"
] | 5df099602abd5afdd055e9a306c82dbeb0ba959b9ef4e0be85f989112f6c0bdf |
#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2007-2018 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
#... | amjames/psi4 | psi4/driver/procrouting/dft_funcs/dict_dh_funcs.py | Python | lgpl-3.0 | 18,102 | [
"Psi4"
] | 4245fe5d2ff639fc8cb48fc881b99d8bf84bd2b39ef15e10a5425795608e0758 |
"""
Collection of DIRAC useful network related modules
by default on Error they return None
"""
__RCSID__ = "$Id$"
import socket
import urlparse
import os
import struct
import array
import fcntl
import platform
from DIRAC.Core.Utilities.ReturnValues import S_OK, S_ERROR
def discoverInterfaces():
max_possibl... | fstagni/DIRAC | Core/Utilities/Network.py | Python | gpl-3.0 | 2,429 | [
"DIRAC"
] | bfbaedad4e82fe123702764423e5f39e2244d9d224a2a73a0e252ccf55533306 |
#!/usr/bin/env python3
"""
Copyright 2020 Paul Willworth <ioscode@gmail.com>
This file is part of Galaxy Harvester.
Galaxy Harvester is free software: you can redistribute it and/or modify
it under the terms of the GNU Affero General Public License as published by
the Free Software Foundation, either version 3 ... | pwillworth/galaxyharvester | html/markUnavailable.py | Python | gpl-3.0 | 4,274 | [
"Galaxy"
] | 23a50b7feeb881a1bf66738284787caadd68a6031d83597554dd870bad26a020 |
# emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*-
# vi: set ft=python sts=4 ts=4 sw=4 et:
"""The fsl module provides classes for interfacing with the `FSL
<http://www.fmrib.ox.ac.uk/fsl/index.html>`_ command line tools. This
was written to work with FSL version 4.1.4.
Change directory to p... | JohnGriffiths/nipype | nipype/interfaces/fsl/preprocess.py | Python | bsd-3-clause | 76,421 | [
"Gaussian",
"VTK"
] | 95d9fc68d50db4ae392d2467218a36e5befecc4596b2211ed66b3dccd2d9201c |
from functools import reduce
from operator import mul
import numpy as np
import pytest
from devito import (Grid, Function, TimeFunction, SparseTimeFunction, SpaceDimension,
Dimension, SubDimension, Eq, Inc, Operator, info)
from devito.exceptions import InvalidArgument
from devito.ir.iet import Cal... | opesci/devito | tests/test_dle.py | Python | mit | 31,484 | [
"VisIt"
] | 9f8a2c0aa3095ae60c9a77eff50bd496788b3f993e5aa89764ccf745ee05c8d4 |
#!/usr/bin/env python
'''
setup board.h for chibios
'''
import argparse
import sys
import fnmatch
import os
import dma_resolver
import shlex
import pickle
import re
import shutil
parser = argparse.ArgumentParser("chibios_pins.py")
parser.add_argument(
'-D', '--outdir', type=str, default=None, help='Output directo... | fhedberg/ardupilot | libraries/AP_HAL_ChibiOS/hwdef/scripts/chibios_hwdef.py | Python | gpl-3.0 | 75,025 | [
"CRYSTAL"
] | 009aed3372430a54681ddeacec714c632d0d47bc82d0a557c65bf31866c01fd2 |
r"""
This example shows how to use the post_process_hook to probe the output data.
Find :math:`\ul{u}` such that:
.. math::
\int_{\Omega} D_{ijkl}\ e_{ij}(\ul{v}) e_{kl}(\ul{u})
= 0
\;, \quad \forall \ul{v} \;,
where
.. math::
D_{ijkl} = \mu (\delta_{ik} \delta_{jl}+\delta_{il} \delta_{jk}) +
\l... | lokik/sfepy | examples/linear_elasticity/linear_elastic_probes.py | Python | bsd-3-clause | 5,214 | [
"VTK"
] | 0d271972d701482dbb1647e7feed4c0582f7a4d1703f2411e481d2b5d4619a8d |
#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# --- BEGIN_HEADER ---
#
# ssslogin - SSS welcome and login backend
# Copyright (C) 2003-2014 The MiG Project lead by Brian Vinter
#
# This file is part of MiG.
#
# MiG is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public Lic... | heromod/migrid | mig/shared/functionality/ssslogin.py | Python | gpl-2.0 | 8,129 | [
"Brian"
] | 6f6ddebdfea3ab8e02bd3a08ee664ddf654b994e401df9c5c23cc234d195f196 |
"""
Acceptance tests for Studio.
"""
from __future__ import absolute_import
import uuid
from selenium.webdriver.common.keys import Keys
from common.test.acceptance.fixtures.course import CourseFixture, XBlockFixtureDesc
from common.test.acceptance.pages.common.auto_auth import AutoAuthPage
from common.test.acceptanc... | ESOedX/edx-platform | common/test/acceptance/tests/studio/test_studio_general.py | Python | agpl-3.0 | 12,845 | [
"VisIt"
] | cad180ee5382eb68fa2c34661b0da00d7588cc771dac1a5c7e04c7648cddb0c9 |
import os
import time
import collections
import datetime
import logging
import json
from lxml import html, etree
from StringIO import StringIO
from lems_ui.models import LemsElement, LemsTypeTag
from lems_ui.models import LemsModel, ParameterisedModel
from lems_ui.models import Lems2FpgaJob, MODEL_TYPES, all_availabl... | Si-elegans/Web-based_GUI_Tools | lems_ui/views.py | Python | apache-2.0 | 27,965 | [
"NEURON"
] | e6c36d1a8c40852f7648118438f011db2ad38b64b92b666eaf11465f8899d0ff |
#!/usr/bin/env python
# Copyright (c) 2011-2020, wradlib developers.
# Distributed under the MIT License. See LICENSE.txt for more info.
"""
Interpolation
^^^^^^^^^^^^^
Interpolation allows to transfer data from one set of locations to another.
This includes for example:
- interpolating the data from a polar grid to... | wradlib/wradlib | wradlib/ipol.py | Python | mit | 57,761 | [
"Gaussian"
] | 679b8f23dfbedad480dd6a86c09f8cd8bb6c5941050e56f2a29e9e22251187fa |
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RGoDb(RPackage):
"""A set of annotation maps describing the entire Gene
Ontology assem... | iulian787/spack | var/spack/repos/builtin/packages/r-go-db/package.py | Python | lgpl-2.1 | 666 | [
"Bioconductor"
] | 9f3897b5a47ba5eadf9b741c4adbcbd9fc6bc62f80850a7ef3ba986413f5404e |
__all__ = [
'OutlineContinents',
'GlobeSource',
]
import numpy as np
import pyvista as pv
import vtk
from .. import interface
from ..base import AlgorithmBase
class OutlineContinents(AlgorithmBase):
"""A simple data source to produce a ``vtkEarthSource`` outlining the
Earth's continents. This works ... | banesullivan/ParaViewGeophysics | PVGeo/model_build/earth.py | Python | bsd-3-clause | 5,033 | [
"ParaView",
"VTK"
] | c3c9104676070da9c4c988fb20c54c04a92b7ec41e164b9abee0fe6c4ef2b049 |
# Copyright 2017 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or a... | unnikrishnankgs/va | venv/lib/python3.5/site-packages/tensorflow/models/lfads/run_lfads.py | Python | bsd-2-clause | 32,603 | [
"Gaussian"
] | b1fa3b00180b62c37e97f6e76519663fb325e22b08b4943a84c5c3298157030d |
"""Simple XML-RPC Server.
This module can be used to create simple XML-RPC servers
by creating a server and either installing functions, a
class instance, or by extending the SimpleXMLRPCServer
class.
It can also be used to handle XML-RPC requests in a CGI
environment using CGIXMLRPCRequestHandler.
A list of possibl... | MalloyPower/parsing-python | front-end/testsuite-python-lib/Python-2.7/Lib/SimpleXMLRPCServer.py | Python | mit | 25,680 | [
"Brian"
] | 381d444c051442826a92e6e301bdef8d8de68a76159616d374a242e3207c4cae |
# Copyright (C) 2004 CCLRC & NERC( Natural Environment Research Council ).
# This software may be distributed under the terms of the
# Q Public License, version 1.0 or later. http://ndg.nerc.ac.uk/public_docs/QPublic_license.txt
"""
na_to_nc.py
===========
Contains the NAToNC class for converting a NASA... | eufarn7sp/egads-eufar | egads/thirdparty/nappy/nc_interface/na_to_nc.py | Python | bsd-3-clause | 3,191 | [
"NetCDF"
] | 228e66b3c112113d7523289ec8d884ced8d72de18fcef2474761fe18d98152d6 |
# -*- coding: utf-8 -*-
# (c) 2016 Andreas Motl <andreas.motl@elmyra.de>
import tempfile
from pprint import pprint
from twisted.logger import Logger, LogLevel
from twisted.web.template import renderElement
from kotori.io.export.html import DatatablesPage
from kotori.io.protocol.util import get_data_uri
from kotori.io.e... | zerotired/kotori | kotori/io/export/tabular.py | Python | agpl-3.0 | 3,423 | [
"NetCDF"
] | 1fba00e01659cbed9e90ec8fbd5276cc77fc79aed8b6aaec6ce5e142698b4542 |
# foobar:~/dont_mind_the_map USER$ cat readme.txt
# Don't mind the map
# ==================
# After the trauma of Dr. Boolean's lab, the rabbits are eager to get back to their normal lives in a well-connected community, where they can visit each other frequently. Fortunately, the rabbits learned something about engin... | Ervii/brain-marathon | foobar-google/mind_the_map/dont_mind_the_map.py | Python | apache-2.0 | 9,978 | [
"VisIt"
] | 2a008e3cf35ad0a0ba0b482d6069ab92d2a2860426c222b3205b9d9632b3253a |
#!/usr/bin/python
# -*- coding: utf-8 -*-
from webdriver_testing.webdriver_base import WebdriverTestCase
from webdriver_testing.pages.site_pages import watch_page
from webdriver_testing.pages.site_pages import video_page
from webdriver_testing.pages.site_pages import search_results_page
from webdriver_testing.data_fact... | ujdhesa/unisubs | apps/webdriver_testing/check_watch_page.py | Python | agpl-3.0 | 10,672 | [
"Brian"
] | fc48bc94af0122beec984ad086cbb61a8aa41cef4fd5056512c3b502c2e5a101 |
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