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# Copyright 2017 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or a... | unnikrishnankgs/va | venv/lib/python3.5/site-packages/tensorflow/models/lfads/distributions.py | Python | bsd-2-clause | 17,382 | [
"Gaussian"
] | 08baeda0dda46217df4b9c3c4e5a22e23cc334538c7fadc534f3a3d813496f87 |
from __future__ import division
from __future__ import print_function
from past.utils import old_div
import sys
sys.path.insert(1,"../../../")
import h2o
from tests import pyunit_utils
from h2o.estimators.glm import H2OGeneralizedLinearEstimator
import pandas as pd
import numpy as np
# test missing_value handling for ... | michalkurka/h2o-3 | h2o-py/tests/testdir_algos/glm/pyunit_pubdev_6999_glm_interaction_NA.py | Python | apache-2.0 | 7,181 | [
"Brian"
] | 204d49818054beb9d5459290c5281a7a80e28c706c4b1e5d5fbec3ab3b952b4d |
##############################################################
# Trilogy - Color / grayscale image maker (from FITS input)
# Dan Coe
# http://www.stsci.edu/~dcoe/trilogy/
##############################################################
# Trilogy produces nice color / grayscale images based on your input FITS files... | moustakas/impy | image/trilogy.py | Python | gpl-2.0 | 57,974 | [
"Galaxy"
] | dc7e23bcb8295d097376fc255cacbe1150673ef57c726305ef07facf7e150b9f |
# coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, unicode_literals
"""
This module implements an interface to enumlib, Gus Hart"s excellent Fortran
code for enumerating derivative structures.
This module depends on a compiled... | aykol/pymatgen | pymatgen/command_line/enumlib_caller.py | Python | mit | 15,797 | [
"VASP",
"pymatgen"
] | 0b4f3006fa9e9de604f68e00a93ecb87474615fff07171b827f496c073a51e2b |
# Copyright 2021 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | tensorflow/tensorflow | tensorflow/python/util/nest.py | Python | apache-2.0 | 66,421 | [
"VisIt"
] | 8dad6843adf14ef37bdc7db51b2f96955efdc5a5b86a19c0361e607ca0f67351 |
# coding=utf-8
from __future__ import division
import collections as coll
import numpy as np
from scipy import ndimage as ndi
from ..util import img_as_float, regular_grid
from ..segmentation._slic import (_slic_cython,
_enforce_label_connectivity_cython)
from ..color import rgb2lab
... | kenshay/ImageScript | ProgramData/SystemFiles/Python/Lib/site-packages/skimage/segmentation/slic_superpixels.py | Python | gpl-3.0 | 7,611 | [
"Gaussian"
] | c32f3c2d78e0a384b96f66bfc15f07acfdbf75a6a77d4f7d22d0bfc80287d5cd |
print "Loading ", __name__
import poser
import Numeric as num
from portability import *
from geometry import Geometry
from hair import HairGeometry
def topological_order(children):
seen = {}
result = []
def visit(v):
if not seen.has_key(v):
seen[v] = True
for w in childr... | odf/pydough | from_poser.py | Python | mit | 8,210 | [
"VisIt"
] | 7184b442c7f60d61919e2ea9ab3895fb515fd994f7347b7c66bc1b888191b489 |
# -*- coding: utf-8 -*-
"""
Acceptance tests for CMS Video Module.
"""
import os
from unittest import skipIf
from mock import patch
from nose.plugins.attrib import attr
from common.test.acceptance.fixtures.course import CourseFixture, XBlockFixtureDesc
from common.test.acceptance.pages.common.auto_auth import AutoAu... | proversity-org/edx-platform | common/test/acceptance/tests/video/test_studio_video_module.py | Python | agpl-3.0 | 12,257 | [
"VisIt"
] | 0eb020d48acb229aef0b60186fd1e9a981184b9eb630dfaa80f4aa3a6481d436 |
#!/usr/bin/env python
# Copyright 2020 The PySCF Developers. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless... | sunqm/pyscf | pyscf/solvent/_ddcosmo_tdscf_grad.py | Python | apache-2.0 | 57,033 | [
"PySCF"
] | 658f08da3f87d80c6d7c676662af6a988c45cadea84b068a6622ae05b25fe831 |
# (c) 2014 Michael DeHaan, <michael@ansible.com>
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later ve... | bjolivot/ansible | lib/ansible/playbook/role/requirement.py | Python | gpl-3.0 | 8,175 | [
"Galaxy"
] | 6ef1bb4f417325d9a3792c70da58367ba1786d94e6fb13191e62ce80ffdc67c6 |
##
# title: BreadInterface.Controller.py
# by: Brian Kim
# description: the bread and butter of BreadInterface.
# Developers will subclass the Controller to utilitize
# the familiar BreadInterface button layout in addition
# to their own app-specific functionality
#
import pygtk
pygtk.require('2.0')
import gtk
... | briansan/BreadInterface | py/BreadInterface/core/Controller.py | Python | bsd-2-clause | 3,731 | [
"Brian"
] | f74f6adf333362780f8a1d7fff1e2c3e25228a98dc994812bf9cfa9451eb7f21 |
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
__RCSID__ = "$Id$"
import base64
from DIRAC import S_OK, S_ERROR, gLogger
from DIRAC.Core.Utilities import DEncode
gForceRawEncoding = False
try:
import zlib
gZCompressionEnabled = True
except Impor... | ic-hep/DIRAC | src/DIRAC/Core/Utilities/Plotting/FileCoding.py | Python | gpl-3.0 | 3,101 | [
"DIRAC"
] | 1acdcb533012422417d8517b29528922f5a217ea09d60785d3f5ba225e57663a |
import glob
import gbtpipe
from spectral_cube import SpectralCube
import astropy.units as u
from astropy.table import Table
from astropy.utils.data import get_pkg_data_filename
from astropy.coordinates import SkyCoord
import numpy as np
from astropy.convolution import Kernel1D
import scipy.ndimage as nd
from astropy.io... | low-sky/degas | degas/postprocess.py | Python | gpl-3.0 | 14,599 | [
"Galaxy"
] | 1e59cf7504700d51cd230d077610dd45080ef3296ec39ebf55cbdd6250492004 |
#!/usr/bin/env python
"""
This script is a python version of TimingAccuracyGLQC. We use numpy functions to
simplify the creation of random coefficients.
"""
import os
import sys
import time
import numpy as np
sys.path.append(os.path.join(os.path.dirname(__file__), "../../.."))
import pyshtools as shtools
#==== MAIN ... | ian-r-rose/SHTOOLS | examples/python/TimingAccuracy/TimingAccuracyGLQC.py | Python | bsd-3-clause | 2,760 | [
"Gaussian"
] | 305c88af87922020d16ba0c0fc32a6fadea5089354936f642d35b3cbf01e3dae |
# $Id: manpage.py 5901 2009-04-07 13:26:48Z grubert $
# Author: Engelbert Gruber <grubert@users.sourceforge.net>
# Copyright: This module is put into the public domain.
"""
Simple man page writer for reStructuredText.
Man pages (short for "manual pages") contain system documentation on unix-like
systems. The pages ar... | mozilla/sheriffs | vendor-local/src/python-nose/doc/manpage.py | Python | bsd-3-clause | 35,499 | [
"VisIt"
] | c6e9a8a5e363266eef9f9ec82fb887b477a23ffda46f0e4eaedaa01567fdca14 |
# -*- coding: utf-8 -*-
#!/usr/bin/env python
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2000-2007 Donald N. Allingham
# Copyright (C) 2007 Johan Gonqvist <johan.gronqvist@gmail.com>
# Copyright (C) 2007-2009 Gary Burton <gary.burton@zen.co.uk>
# Copyright (C) 2007-2009 Stephane Charet... | jralls/gramps | gramps/plugins/webreport/repository.py | Python | gpl-2.0 | 11,355 | [
"Brian"
] | 8359e4049388d1b33fc2dbaac8f8e0f059654f37196eb63bcee3ba6132ac0328 |
#Plots a lot of the various quantities that cna be extracted from emission lines
'''
'''
import numpy as np
import matplotlib.pyplot as plt
from astropy.io import ascii
import sys, os, string
import pandas as pd
from astropy.io import fits
import collections
#Folder to save the figures
figout = '/Users/blorenz/COSMO... | brianlorenz/COSMOS_IMACS_Redshifts | PlotCodes/ReadEmission.py | Python | mit | 24,020 | [
"Galaxy",
"Gaussian"
] | aec758e3c0d3710106a5d9ccb1b48dca8b5f1fb13544526a261e2efc725e310a |
from ase.calculators.gaussian import Gaussian
from ase.atoms import Atoms
from ase.optimize.lbfgs import LBFGS
# First test to make sure Gaussian works
calc = Gaussian(method='pbepbe', basis='sto-3g', force='force',
nproc=1, chk='water.chk', label='water')
calc.clean()
water = Atoms('OHH',
... | grhawk/ASE | tools/ase/test/gaussian/water.py | Python | gpl-2.0 | 856 | [
"ASE",
"Gaussian"
] | 2c95802741dd8bf022aeaba229f0740e267e57814c9975dcc1e30ed82b9c4041 |
from Sire.MM import *
from Sire.FF import *
from Sire.Vol import *
from Sire.IO import *
from Sire.System import *
from Sire.Move import *
from Sire.Maths import *
from Sire.Units import *
from Sire.Mol import *
from Sire.Qt import *
import Sire.Stream
from nose.tools import assert_almost_equal
import math
coul_cu... | michellab/SireUnitTests | unittests/SireMM/test_gridff.py | Python | gpl-3.0 | 4,170 | [
"Amber"
] | 705450f72783eb6f0e6c86b9ea690682ccd09d526fb6f54ec41d45cbf765695a |
#!/usr/bin/env python
from pycparser import c_ast, parse_file
from subprocess import Popen, PIPE
import sys
import os
import argparse
HERE = os.path.dirname(__file__)
DOXY_RELDIR = 'doxygen/html'
def skip_name(name):
return name[0] == '_'
class DocItemCollector(c_ast.NodeVisitor):
def __init__(self):
... | amirkdv/biseqt | docs/doxygen-glue.py | Python | bsd-3-clause | 3,283 | [
"VisIt"
] | c688b6d16aefbf1299040d6f2f2b10be9fc19e33a526e3c32fc4829ac3d9faf1 |
import logging
import re
import os
import select
import signal
try:
import autotest.common as common
except ImportError:
import common
from autotest.client import utils, os_dep
from autotest.client.shared import error
from autotest.client.shared.utils import VersionableClass
class ServiceManagerInterface(Vers... | uni-peter-zheng/autotest | client/shared/openvswitch.py | Python | gpl-2.0 | 18,628 | [
"ASE"
] | b5c7d8abd785161a6e86f489241e9facf34f4e97cf0fa0f9537189c2715032fd |
# Layer implementing a Gaussian mixture model.
# Implementation largely follows https://github.com/fchollet/keras/issues/1061.
# In contrast to the original code, the loss was divided by sqrt(2 pi) to use the same Gaussian as in numpy.random.norm
from keras.layers import Layer
# TODO: This is only implemented for the... | jrieke/timeseries-rnn | gmm.py | Python | mit | 2,430 | [
"Gaussian"
] | af1295eeefac4a482ad1e205e7ad2749d8ff9416257e65500fefe8f57f486940 |
import numpy as np
from keras.callbacks import Callback
from keras import backend as K
class DeadReluDetector(Callback):
"""Reports the number of dead ReLUs after each training epoch
ReLU is considered to be dead if it did not fire once for entire training set
# Arguments
x_train: Training datas... | keras-team/keras-contrib | keras_contrib/callbacks/dead_relu_detector.py | Python | mit | 4,682 | [
"NEURON"
] | c5a79b0bd7b37b284b0b73aec44e18098207e85d5d18b754cadf8f41f4a3d09f |
#!/usr/bin/env python
#
#
# FreeType 2 glyph name builder
#
# Copyright 1996-2017 by
# David Turner, Robert Wilhelm, and Werner Lemberg.
#
# This file is part of the FreeType project, and may only be used, modified,
# and distributed under the terms of the FreeType project license,
# LICENSE.TXT. By co... | Warboss-rus/wargameengine | WargameEngine/freetype2/src/tools/glnames.py | Python | gpl-3.0 | 112,194 | [
"FEFF"
] | bd164329d8343a988299b926e13abd8a5d99c257645a31d3fcbb7ee55cfd91f7 |
# -*- encoding: utf-8 -*-
"""Prints the location of python object definition in your file-system.
"""
from __future__ import print_function
import sys
import argparse
import importlib
import inspect
import re
import os
from textwrap import dedent
import ast
from collections import namedtuple
# =============== #
# Co... | nicolasdespres/pyloc | pyloc.py | Python | bsd-2-clause | 14,893 | [
"VisIt"
] | 474914a2efe59f28dfa2918f2c42730ccfb1762ccfda07477c21150d998033bb |
"""
===========================================
Simulation of the Fermi-Pasta-Ulam problem
===========================================
Visit "https://github.com/libeanim/fpu-problem" for further information.
:license: GPLv2
:date: 05.03.2015
"""
import numpy as np
import matplotlib.pyplot as plt
import matplotlib... | libeanim/fpu-problem | fpu-simulation.py | Python | gpl-2.0 | 5,477 | [
"VisIt"
] | a06cd63bbb7cbe55fbf8bd1dceac0091c1c7c2115e51a01abd10bc0e070889d5 |
#!/usr/bin/env ganga
import sys
import argparse
# Taken from
# http://stackoverflow.com/questions/4042452/display-help-message-with-python-argparse-when-script-is-called-without-any-argu
class MyParser(argparse.ArgumentParser):
def error(self, message):
sys.stderr.write('error: %s\n' % message)
s... | nasfarley88/gangarun | gangarun.py | Python | gpl-2.0 | 2,692 | [
"DIRAC"
] | cda7e606b6b159909b760d65ccb91fab773c26d7b1f9193905fb5840defae877 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# Copyright (c) 2013 Spotify AB
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may not
# use this file except in compliance with the License. You may obtain a copy of
# the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless requi... | tjrileywisc/annoy | setup.py | Python | apache-2.0 | 2,736 | [
"VisIt"
] | cfe4ff08434e6c58e34bda0de4f703b0789717753f530fd5d10fbaa283cf0a9e |
"""
QAPI types generator
Copyright IBM, Corp. 2011
Copyright (c) 2013-2018 Red Hat Inc.
Authors:
Anthony Liguori <aliguori@us.ibm.com>
Michael Roth <mdroth@linux.vnet.ibm.com>
Markus Armbruster <armbru@redhat.com>
This work is licensed under the terms of the GNU GPL, version 2.
# See the COPYING file in the top-l... | dslutz/qemu | scripts/qapi/types.py | Python | gpl-2.0 | 8,788 | [
"VisIt"
] | 93534e1570b677405fe9e8fd32c6ac4a7e47d812d5dc8a4cfb27605cb67d7104 |
#------------------------------------------------------------------------------
# askremote.py
#
# (C) 2001-2006 by Marco Paganini (paganini@paganini.net)
#
# This file is part of ASK - Active Spam Killer
#
# ASK is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Publi... | celer/ask | askremote.py | Python | gpl-2.0 | 28,965 | [
"VisIt"
] | ec929307de70c8b471dac0137d37bf0686718a89ada41f389d9d22a75da39e41 |
"""
The name list was sourced from UCD and DCU project
https://www.duchas.ie/en/nom
first names from Northern Ireland Statistics and Research Agency
https://www.nisra.gov.uk/publications/baby-names-2016
1996 series
"""
from .. import Provider as PersonProvider
class Provider(PersonProvider):
formats = (
... | joke2k/faker | faker/providers/person/en_IE/__init__.py | Python | mit | 58,684 | [
"Amber",
"Brian",
"Dalton",
"Desmond"
] | d0977baeca1762a1fd04c72c01764c2856d3b7f611b6e22707c0b56c717ac353 |
#!/usr/bin/env python
# Copyright (c) 2012 The Chromium Authors. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
'''Unit tests for grit.tool.android2grd'''
import os
import sys
if __name__ == '__main__':
sys.path[0] = os.path.abspath(os.path... | leighpauls/k2cro4 | tools/grit/grit/tool/android2grd_unittest.py | Python | bsd-3-clause | 7,230 | [
"xTB"
] | a52682510cda2a592b5d7a8787ea0c47a6d8623f5102a30d854555549d2c9ba9 |
import optparse
from ase.units import Bohr, Hartree
from ase.tasks.calcfactory import CalculatorFactory, str2dict
from gpaw.utilities.gpts import get_number_of_grid_points
from gpaw.wavefunctions.pw import PW
class GPAWFactory(CalculatorFactory):
def __init__(self, show_text_output=False, write_gpw_file=None,
... | robwarm/gpaw-symm | gpaw/factory.py | Python | gpl-3.0 | 3,562 | [
"ASE",
"GPAW"
] | 6b15a1b1a1975b0182ab8dc8a39a3c2457988b47f7ad252036dd5cfea7506804 |
"""
Manages the feed cache.
@var iface_cache: A singleton cache object. You should normally use this rather than
creating new cache objects.
"""
# Copyright (C) 2009, Thomas Leonard
# See the README file for details, or visit http://0install.net.
# Note:
#
# We need to know the modification time of each interface, b... | timdiels/0install | zeroinstall/injector/iface_cache.py | Python | lgpl-2.1 | 19,732 | [
"VisIt"
] | 2baab3c7ef1abd916d3535b1756f7c2d3a1a98aba34f2296144f1c0711e8d0db |
# -*- coding: utf-8 -*-
#
# Python Audio Tools documentation build configuration file, created by
# sphinx-quickstart on Wed Mar 17 10:20:37 2010.
#
# This file is execfile()d with the current directory set to its containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated fi... | R-a-dio/python-audio-tools | docs/programming/source/conf.py | Python | gpl-2.0 | 6,353 | [
"Brian"
] | 73e1621b1d1302f4c1f491b4ba7a69aea123ccdbd684c9aa6dbf191938a13679 |
# -*- coding: utf-8 -*-
"""
ORCA Open Remote Control Application
Copyright (C) 2013-2020 Carsten Thielepape
Please contact me by : http://www.orca-remote.org/
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as publi... | thica/ORCA-Remote | src/ORCA/utils/wait/IsWaiting.py | Python | gpl-3.0 | 1,875 | [
"ORCA"
] | 467af9ed366278cd907eca943a830c6be5b405b13279a2cf0534413eb929df04 |
#!/usr/bin/python
import sys
import os
import unittest
from pyuppaal.ulp import lexer
from pyuppaal.ulp.systemdec_parser import SystemDeclarationParser
class TestBasicParsing(unittest.TestCase):
def test_parse_very_simple_systemdec(self):
sysdec = """system Process;"""
#lex = lexer.lexer
... | bencaldwell/pyuppaal | tests/ulp/test_systemdec_parser.py | Python | gpl-3.0 | 11,350 | [
"VisIt"
] | e09a8417bd4b404fc1ab24fc046edde61ae821c424528794083967df6ecc3ee0 |
from setuptools import setup, find_packages
import account
setup(
name="django-user-accounts",
version=account.__version__,
author="Brian Rosner",
author_email="brosner@gmail.com",
description="a Django user account app",
long_description=open("README.rst").read(),
license="MIT",
url=... | ntucker/django-user-accounts | setup.py | Python | mit | 1,065 | [
"Brian"
] | 3d5b6019d6d2f9f0f62cc54b184e924938d10ba28d7d54bc10099f78b538bc97 |
# standard modules
import datetime
import copy
import logging
import os
import subprocess
import sys
# 3rd party modules
from configobj import ConfigObj
import numpy
from PyQt5 import QtWidgets
import timezonefinder
import xlrd
# PFP modules
cwd = os.getcwd()
sys.path.insert(0, cwd[:cwd.index("utilities")-1])
import sc... | OzFlux/PyFluxPro | utilities/cleanup_netcdf_files.py | Python | gpl-3.0 | 30,037 | [
"NetCDF"
] | 2e076f90848f42248de62fa4d0f5f604e167702d11156c4dd93a6485f2932bfe |
# -*- coding: utf-8 -*-
"""
Created on Thu Nov 23 11:23:03 2017
@author: tih
"""
import numpy as np
import os
import scipy.interpolate
import gdal
from openpyxl import load_workbook
import osr
from datetime import datetime, timedelta
import pandas as pd
import shutil
import glob
from netCDF4 import Dataset
import warn... | wateraccounting/SEBAL | PreSEBAL/preSEBAL_light.py | Python | apache-2.0 | 51,271 | [
"NetCDF"
] | 2056b3cfc81d6844ad37e380188f27fd32898931313da449068103c338501753 |
""" Few unit tests for LCG clients
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
__RCSID__ = "$Id$"
import mock
from datetime import datetime, timedelta
from DIRAC.Core.LCG.GOCDBClient import GOCDBClient
mockRSS = mock.MagicMock()
GOCCli = GOCDBCli... | ic-hep/DIRAC | src/DIRAC/Core/LCG/test/Test_LCG.py | Python | gpl-3.0 | 30,476 | [
"DIRAC"
] | 6349a37943af04399d408688f44b7f1bf779f02bf0e815c8617adaa29a9f677b |
sections={
'varbas': {
'title': "BASIC variables",
'header': "ABINIT, basic input variables:",
'text': """This document lists and provides the description
of the name (keywords) of the "basic" input
variables to be used in the main input file of the abinit code.
""",
},
'vardev': {
'title': "DEVELOPMENT variables",
'he... | SamKChang/abinit-7.10.5_multipole | doc/input_variables/GAF_not_activated/ABINIT_sections.py | Python | gpl-3.0 | 5,087 | [
"ABINIT",
"Wannier90"
] | ef81c124b2d1dcdf0d1264fc61edc2d9313d1eb1e82b4428d6bc09603437401e |
#!/usr/bin/env python
# coding: utf-8
# # Advanced: Distribution Types
# ## Setup
#
# Let's first make sure we have the latest version of PHOEBE 2.3 installed (uncomment this line if running in an online notebook session such as colab).
# In[1]:
#!pip install -I "phoebe>=2.3,<2.4"
# In[2]:
import phoebe
from ... | phoebe-project/phoebe2-docs | development/tutorials/distribution_types.py | Python | gpl-3.0 | 7,854 | [
"Gaussian"
] | 3c68bd7607ac0f7bada8558b78ac4acc82d65dc1d36b0a6d38f2185e43553375 |
"""
Simple Python template file allowing users to define intent resposnes (convention is lowercase
intent name from your intentsSchema and Utterances) as a function; leaving all the lambda skill
service details to the alexa_py.py file.
Intents implemented here for example:
About
Contact
Upcoming
Intents support... | wray/alexa_python | src/my_py.py | Python | mit | 1,726 | [
"COLUMBUS"
] | 7efb618a0c3fce32119f717df589e7ef12fb0d47c9b9918f5fcbfb8eb855a28f |
###########################################################################
#
# This program is part of Zenoss Core, an open source monitoring platform.
# Copyright (C) 2007, Zenoss Inc.
#
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License versi... | zenoss/ZenPacks.community.SunMibMonitor | ZenPacks/community/SunMibMonitor/modeler/plugins/community/snmp/SUNProcessMap.py | Python | gpl-2.0 | 2,322 | [
"VisIt"
] | c9f1deba79680edb1d83bd97a7a561b5cc76d0440f5a990e9d018f73188bfd6d |
from copy import deepcopy
from enum import Enum
from functools import reduce
from math import inf, isinf
from typing import List, Tuple
from abstract_domains.lattice import BottomMixin
from abstract_domains.numerical.dbm import IntegerCDBM
from abstract_domains.numerical.interval_domain import IntervalLattice, Interva... | gitsimon/spadup-lyra | abstract_domains/numerical/octagon_domain.py | Python | mpl-2.0 | 29,159 | [
"VisIt"
] | 428332c85602d26145ee49fffb59b74cfcdbdea564ca4cf90fa11d44855681de |
import os
if not os.path.exists("temp"):
os.mkdir("temp")
def mc_test():
import os
import numpy as np
from pyemu import MonteCarlo, Cov
jco = os.path.join("pst","pest.jcb")
pst = jco.replace(".jcb",".pst")
out_dir = os.path.join("mc")
if not os.path.exists(out_dir):
os.mkdir(o... | jtwhite79/pyemu | autotest/mc_tests.py | Python | bsd-3-clause | 27,350 | [
"Gaussian"
] | 1faf86db7e5bfbc210b71a3a14400676883b56ee915fb1dc943d8883a0184f30 |
#!/usr/bin/python
from reldi.tagger import Tagger
from reldi.lemmatiser import Lemmatiser
from getpass import getpass
import json
import argparse
import os
user='user'
coding='utf8'
def write(result,file):
final=set()
for sentence in result['sentences']['sentence']:
final.add(sentence['tokenIDs'].split... | clarinsi/reldi-lib | tag_all.py | Python | apache-2.0 | 1,712 | [
"VisIt"
] | 9da024f129a8b7fb43e47d81e14541c96a6f1b779526422e7252ac390ba80864 |
# pylint: disable=C0111
# pylint: disable=W0621
from __future__ import absolute_import
import time
from lettuce import world, step
from lettuce.django import django_url
from django.contrib.auth.models import User
from django.core.urlresolvers import reverse
from student.models import CourseEnrollment
from xmodule.mo... | yokose-ks/edx-platform | lms/djangoapps/courseware/features/common.py | Python | agpl-3.0 | 7,752 | [
"VisIt"
] | fdb7946194dde5f0225d94a1af59e065e1ca416ae772c0d0c9e4ef4a230be397 |
#####################################
# Imports
#####################################
# Python native imports
import sys
from PyQt5 import QtWidgets, QtCore, QtGui, uic
import signal
import rospy
import logging
import qdarkstyle
import time
# Custom Imports
import Framework.StartupSystems.ROSMasterChecker as ROSMaste... | caperren/Archives | OSU Coursework/ROB 421 - Applied Robotics/software/ros_packages/denso_ground_station/src/ground_station.py | Python | gpl-3.0 | 8,062 | [
"ASE"
] | 2956aa7c5ad35d47ea4a0c432d5ddc853e822020dc7287603b893c27b5e035b4 |
#!/usr/bin/env python
"""
Extract structures from NEB results and write to POSCAR files.
Usage:
nebout2poscars.py [options]
Options:
-h, --help Show this message and exit.
"""
from __future__ import print_function
import os,sys
from docopt import docopt
import numpy as np
from ase.io import write
sys.path.appe... | ryokbys/nap | nappy/espresso/nebout2poscars.py | Python | mit | 2,547 | [
"ASE",
"VASP"
] | 78aa0e373608cc8a985782b979892113bf62d7a2fb52e3b2d0e299c461041c9b |
import bs4
import copy
import datetime
import functools
import time
from django.conf import settings as django_settings
from django.core import management
from django.core import serializers
import django.core.mail
from django.core.urlresolvers import reverse
from django.test import TestCase
from django.test.client imp... | PearsonIOKI/compose-forum | askbot/tests/email_alert_tests.py | Python | gpl-3.0 | 46,176 | [
"VisIt"
] | 0e02d03c24f0a642076ad2406866d9556e5f3d692da4c1456fb1f2aa3e1b2129 |
""" Collection of user jobs for testing purposes
"""
# pylint: disable=wrong-import-position, invalid-name
from __future__ import print_function, absolute_import
from __future__ import division
__RCSID__ = "$Id$"
import unittest
import time
from DIRAC.Core.Base.Script import parseCommandLine
parseCommandLine()
f... | yujikato/DIRAC | tests/System/unitTestUserJobs.py | Python | gpl-3.0 | 4,132 | [
"DIRAC"
] | 2e5da6d89c4309fb133396e562a97f5347e4287884c46edfa847e63fb20bb52d |
"""Module for operating on VTK data objects.
For more details on VTK, go to www.vtk.org. For more details specifically on VTK
classes, go to http://www.vtk.org/doc/release/5.10/html/classes.html.
Please note, the functions in this module were created and tested using VTK
5.10. VTK 6 introduced a number of backw... | ajgeers/utils | utils/vtklib.py | Python | bsd-2-clause | 24,293 | [
"ParaView",
"VTK"
] | 872bf213405299fae7c8e6afbdca74c01e0e02ef9e9c1af8de1bae6b0adb5bda |
#!/usr/bin/env python
########################################################################
# File : dirac-admin-allow-site
# Author : Stuart Paterson
########################################################################
"""
Add Site to Active mask for current Setup
Example:
$ dirac-admin-allow-site LCG.IN... | DIRACGrid/DIRAC | src/DIRAC/Interfaces/scripts/dirac_admin_allow_site.py | Python | gpl-3.0 | 3,280 | [
"DIRAC"
] | d2f1e46f1968bba96d0b7b36616ba5cf201839a6223a05909af7900057ec9698 |
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2002-2007 Donald N. Allingham
# Copyright (C) 2007-2008 Brian G. Matherly
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; ... | SNoiraud/gramps | gramps/gen/filters/rules/person/_hasnameof.py | Python | gpl-2.0 | 3,873 | [
"Brian"
] | c750ce3f3435746e304261d608f777631b54e0a6484ec52c0b5aabbc23a744c0 |
#!/usr/bin/env python
##### Code by Grant Humphries
##### This code will allow users to download SST data from the European Center for Medium range Weather Forecasting (ECMWF)
from ecmwfapi import ECMWFDataServer
# To run this example, you need an API key
# available from https://api.ecmwf.int/v1/key/
... | worldseabirdunion/DownloadingData | GrantHumphries_DownloadECMWFData_Python/ecmwf_Download_SST.py | Python | cc0-1.0 | 2,080 | [
"NetCDF"
] | a51805d416ba7d0251cd7bb2e9f804a7f8756cbf3094f189a4bef1326ffdea1e |
# -*- coding: utf-8 -*-
#!/usr/bin/env python
#
# Gramps - a GTK+/GNOME based genealogy program
#
# Copyright (C) 2000-2007 Donald N. Allingham
# Copyright (C) 2007 Johan Gonqvist <johan.gronqvist@gmail.com>
# Copyright (C) 2007-2009 Gary Burton <gary.burton@zen.co.uk>
# Copyright (C) 2007-2009 Stephane Charet... | sam-m888/gramps | gramps/plugins/webreport/basepage.py | Python | gpl-2.0 | 126,957 | [
"Brian"
] | 19b11f910eb5eb1e256d860f747de7c85b305cc82098be72273c8880c917153f |
#
# Copyright 2014-2015 Universidad Complutense de Madrid
#
# This file is part of Numina
#
# Numina is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any l... | Pica4x6/numina | numina/array/tests/test_fwhm.py | Python | gpl-3.0 | 2,366 | [
"Gaussian"
] | f834a67ad80c87dfc49cbf4ec2f0086e899bcef8bd0beb568b7252ce70b18156 |
# -*- coding: utf-8 -*-
"""
Shortest path algorithms for weighed graphs.
"""
__author__ = """\n""".join(['Aric Hagberg <hagberg@lanl.gov>',
'Loïc Séguin-C. <loicseguin@gmail.com>',
'Dan Schult <dschult@colgate.edu>'])
# Copyright (C) 2004-2015 by
# Aric Hagb... | beni55/networkx | networkx/algorithms/shortest_paths/weighted.py | Python | bsd-3-clause | 32,864 | [
"VisIt"
] | 41cda5277e0a49b77083907581e4d65647700d131b4815f65a0d62ed0af491c8 |
###############################################################################
##
## Copyright (C) 2014-2016, New York University.
## Copyright (C) 2011-2014, NYU-Poly.
## Copyright (C) 2006-2011, University of Utah.
## All rights reserved.
## Contact: contact@vistrails.org
##
## This file is part of VisTrails.
##
## ... | VisTrails/VisTrails | vistrails/packages/vtk/identifiers.py | Python | bsd-3-clause | 2,070 | [
"VTK"
] | fdfc5b89fc864e33caccff6f09397fe430125caf30a490483ea2e743db4c867e |
from time import time
import sys
import numpy as np
from gpaw import parsize, parsize_bands
from gpaw.grid_descriptor import GridDescriptor
from gpaw.fd_operators import Laplace
from gpaw.mpi import world
from gpaw.utilities.blas import gemm
from gpaw.utilities.lapack import inverse_cholesky
B = parsize_bands # numb... | qsnake/gpaw | oldtest/parallel/bandpar2c.py | Python | gpl-3.0 | 4,062 | [
"GPAW"
] | a539bb4e0a78490e6bc66d5e0b8a37cf0bf8f44ec0fd95027e468548d78f28c7 |
#-*- coding: iso-8859-1 -*
import datetime
import random
from cStringIO import StringIO
from time import time, sleep
try:
from bson import ObjectId
except ImportError: # old pymongo
from pymongo.objectid import ObjectId
from django.http import HttpResponseRedirect, HttpResponse, Http404
from django.conf impor... | peterbe/django-mongokit | exampleproject/exampleproject/benchmarker/views.py | Python | bsd-3-clause | 4,480 | [
"MOE"
] | c4d814b82afdf37c64a045ca16882cd2362715983c32d45622210d0432562ca6 |
from edc_base.audit_trail import AuditTrail
from edc_base.model.models import BaseUuidModel
from edc_consent.models import RequiresConsentMixin
from edc_meta_data.models import CrfMetaDataMixin
from edc_offstudy.models import OffStudyMixin
from edc_sync.models import SyncModelMixin
from edc_visit_tracking.constants imp... | botswana-harvard/bcvp | bcvp/bcvp_subject/models/subject_visit.py | Python | gpl-2.0 | 1,620 | [
"VisIt"
] | 646ac9cd04eefd982bee9cf195976c72fe43bff280be99eda8968ee0de5cd4b4 |
from setuptools import setup, find_packages
version = '5.3.3'
setup(
name="alerta-logstash",
version=version,
description='Alerta plugin for ELK logstash',
url='https://github.com/alerta/alerta-contrib',
license='MIT',
author='Nick Satterly',
author_email='nick.satterly@theguardian.com',
... | alerta/alerta-contrib | plugins/logstash/setup.py | Python | mit | 557 | [
"Elk"
] | 16d85fbc09e3e44a4a6af97c98747bcabc4c9137394e1a784f43b2a2584d0dba |
# --------------------------------------------------------
# Fast R-CNN
# Copyright (c) 2015 Microsoft
# Licensed under The MIT License [see LICENSE for details]
# Written by Ross Girshick
# --------------------------------------------------------
"""Transform a roidb into a trainable roidb by adding a bunch of metada... | Zardinality/TF_Deformable_Net | lib/roi_data_layer/roidb.py | Python | mit | 6,129 | [
"Gaussian"
] | 0de57aa449fd8a22c14f52b39c712abc6c9e440a3e9f117bae5ae9bd0527301a |
import Base
import dynamic_mission
import VS
import pleasure_land
time_of_day=''
bar=-1
weap=-1
room0=-1
dynamic_mission.CreateMissions()
room0 = pleasure_land.MakePleasureAgriculturalLanding(time_of_day)
room = Base.Room ('Casino')
room1 = room
Base.Texture (room, 'background', 'bases/pleasure/Jolson_Concourse'+ti... | ermo/privateer_wcu | bases/pleasure.py | Python | gpl-2.0 | 2,113 | [
"CASINO"
] | 47ec34b5379c87bb6ae0af80f4c053194d271b75a71ca5fdc9b73db393d97aea |
import string, gettext
_ = gettext.gettext
try:
frozenset
except NameError:
# Import from the sets module for python 2.3
from sets import Set as set
from sets import ImmutableSet as frozenset
EOF = None
E = {
"null-character":
_(u"Null character in input stream, replaced with U+FFFD."),
... | kordless/wisdom | lib/html5lib/constants.py | Python | mit | 90,834 | [
"Bowtie"
] | e1ca869f6b231036f4b1d0347f796c576ac9440675c4468710e7980cbbc06d67 |
#
# Copyright (C) 2013,2014,2015,2016 The ESPResSo project
#
# This file is part of ESPResSo.
#
# ESPResSo is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option... | lahnerml/espresso | samples/python/minimal_random_number_generator.py | Python | gpl-3.0 | 1,583 | [
"ESPResSo"
] | fea3dbe566ea6207fd00140cc2f2922620c64c5cdf87c71783f548f614075643 |
from __future__ import print_function, division, absolute_import #, unicode_literals
import os
import sys
import time
from subprocess import Popen
from .subprocesswithtimeout import SubProcessWithTimeout
try:
from ConfigParser import SafeConfigParser, NoOptionError
except ImportError:
# The ConfigParser modu... | jmbeuken/abinit | tests/pymods/jobrunner.py | Python | gpl-3.0 | 20,059 | [
"ABINIT"
] | 851c66cd15d6a63f8c0c22d11a0ae9f5acbfa4a50a718460c1e47649e33b2635 |
# Version: 0.18
"""The Versioneer - like a rocketeer, but for versions.
The Versioneer
==============
* like a rocketeer, but for versions!
* https://github.com/warner/python-versioneer
* Brian Warner
* License: Public Domain
* Compatible With: python2.6, 2.7, 3.2, 3.3, 3.4, 3.5, 3.6, and pypy
* [![Latest Version][... | Ambrosys/glyph | versioneer.py | Python | lgpl-3.0 | 69,019 | [
"Brian"
] | b2883634e7de29a96093a2fb84eb5bc99120d51fd20c5215e7664d017b244449 |
colors = {
'Red': {
'200': 'ef9a9a',
'900': 'b71c1c',
'600': 'e53935',
'A100': 'ff8a80',
'300': 'e57373',
'A400': 'ff1744',
'700': 'd32f2f',
'50': 'ffebee',
'A700': 'd50000',
'400': 'ef5350',
'100': 'ffcdd2',
'800': 'c62... | cruor99/KivyMD | kivymd/color_definitions.py | Python | mit | 15,632 | [
"Amber"
] | 0128c8ca826ab32cbc2da0a8b7283fff82316928d00d22b20ece3ebcc9082bcb |
from rdkit import RDConfig
import unittest
from rdkit.SimDivFilters import rdSimDivPickers
from rdkit.DataManip.Metric import rdMetricMatrixCalc as rdmmc
import numpy
import random
class TestCase(unittest.TestCase):
def setUp(self) :
self.n = 1000
self.m = 80
self.d = 2
self.dataPts = numpy.z... | rdkit/rdkit-orig | Code/SimDivPickers/Wrap/testPickers.py | Python | bsd-3-clause | 3,977 | [
"RDKit"
] | ffde1be91c64b8fe88d861c9c9e2cd846ab9cb08462f5c65a5dfb682db064aa8 |
"""
Linear Discriminant Analysis and Quadratic Discriminant Analysis
"""
# Authors: Clemens Brunner
# Martin Billinger
# Matthieu Perrot
# Mathieu Blondel
# License: BSD 3-Clause
from __future__ import print_function
import warnings
import numpy as np
from scipy import linalg
from .extern... | toastedcornflakes/scikit-learn | sklearn/discriminant_analysis.py | Python | bsd-3-clause | 28,563 | [
"Gaussian"
] | d6b5257adfa00c86459076c2a655f6746b87217e64989d64ee0b2a63c950f543 |
"""
A simple set of extensions to manage post-load requirements for pages.
Commands:
require -- turn on post-load requirements; either 'success' or
'links_ok'.
no_require -- turn off requirements.
skip_require -- for the next page visit, skip requirement... | jasrusable/fun | venv/lib/python2.7/site-packages/twill/extensions/require.py | Python | gpl-2.0 | 3,585 | [
"VisIt"
] | 5a149c1ed5764bd1fbf41aded07b704e2c5c6b11c8eb6aa416b7ab23dbf03c53 |
"""
Single Bubble Model: Bubble simulations
========================================
Use the ``TAMOC`` `single_bubble_model` to simulate the trajectory of a
natural gas bubble rising through the water column. This script demonstrates
the typical steps involved in running the single bubble model.
It uses the ambien... | socolofs/tamoc | bin/sbm/bubble.py | Python | mit | 2,496 | [
"NetCDF"
] | f1fbc4ceb17650f7e01848a58e1f08f6d9a7755ae7d96a9487ee809ad2e5e1b6 |
# -*- coding: utf-8 -*-
#
# Copyright (c) 2016, the cclib development team
#
# This file is part of cclib (http://cclib.github.io) and is distributed under
# the terms of the BSD 3-Clause License.
"""Parser for Q-Chem output files"""
from __future__ import division
from __future__ import print_function
import re
imp... | Schamnad/cclib | src/cclib/parser/qchemparser.py | Python | bsd-3-clause | 66,814 | [
"Gaussian",
"Q-Chem",
"cclib"
] | dbf5fb1a0f25c9d48bdcd29b50a76821051469f1d2c2fbd08fab2b3bf9d5cfe8 |
"""
A simple VTK widget for wxPython.
Find wxPython info at http://wxPython.org
Created by David Gobbi, December 2001
Based on vtkTkRenderWindget.py
Updated to new wx namespace and some cleaning by Andrea Gavana,
December 2006
"""
"""
Please see the example at the end of this file.
-------------------------------... | keithroe/vtkoptix | Wrapping/Python/vtk/wx/wxVTKRenderWindow.py | Python | bsd-3-clause | 23,453 | [
"VTK"
] | 8ba40975f5b409a4f12604b0081ab99724837452664ae6359b10975a3f475018 |
"""
Collection of physical constants and conversion factors.
Most constants are in SI units, so you can do
print '10 mile per minute is', 10*mile/minute, 'm/s or', 10*mile/(minute*knot), 'knots'
The list is not meant to be comprehensive, but just a convenient list for everyday use.
"""
from __future__ import division... | chaluemwut/fbserver | venv/lib/python2.7/site-packages/scipy/constants/constants.py | Python | apache-2.0 | 8,991 | [
"Avogadro"
] | adc4b207eec8be7a87f4dadca8a6778e999551daf7131d2787be28ab80d21f1b |
"""Hierarchical clustering and merging of data for RAPD plugin"""
"""
This file is part of RAPD
Copyright (C) 2017, Cornell University
All rights reserved.
RAPD is free software: you can redistribute it and/or modify
it under the terms of the GNU Affero General Public License as published by
the Free Software Founda... | RAPD/RAPD | src/plugins/merge/plugin.py | Python | agpl-3.0 | 64,460 | [
"CRYSTAL"
] | d7e1b3edaa7df631929beda369df6f18637e8ab132fa239866b7c7e7ddf8a1e6 |
from __future__ import division, print_function
import logging
import numpy
import theano
from theano import tensor
from blocks.bricks.base import application, lazy
from blocks.roles import add_role, WEIGHT, BIAS
from blocks.bricks import Random, Initializable, Linear
from blocks.utils import shared_floatx_zeros
... | drewlinsley/draw_classify | draw/prob_layers.py | Python | mit | 8,790 | [
"Gaussian"
] | bcabf47c1b2743326303dbb462e29b005649e2fe948a525ff60ec52797808284 |
#!/usr/bin/python
#
# Created on Aug 25, 2016
# @author: Gaurav Rastogi (grastogi@avinetworks.com)
# Eric Anderson (eanderson@avinetworks.com)
# module_check: supported
#
#
# This file is part of Ansible
#
# Ansible is free software: you can redistribute it and/or modify
# it under the terms of the GNU General... | kbrebanov/ansible | lib/ansible/modules/network/avi/avi_alertemailconfig.py | Python | gpl-3.0 | 3,741 | [
"VisIt"
] | 61ff0bf593d5de160bd443ba993a11f8aaeed7e0491af593dc85336424fd3680 |
from __future__ import print_function
import json
import datetime, time, os, fnmatch
import re
import textwrap
def replace_path_bits(path,user,maxlen):
res=re.sub('/work/[0-9]+/'+user,r'\$WORK',path)
res=re.sub('/scratch/[0-9]+/'+user,r'\$SCRATCH',res)
res=re.sub('.*?/home.*?/[0-9]+/'+user,'~'+user,res)
return... | dimm0/tacc_stats | tacc_stats/analysis/gen/lariat_utils.py | Python | lgpl-2.1 | 4,592 | [
"Amber",
"CHARMM",
"DL_POLY",
"Gromacs",
"LAMMPS",
"NAMD",
"VASP"
] | 81eb1688f394dcf81faaad5d5973779ef655e854911ff913bcce49cda06c9b50 |
# =============================================================================
# Project 1: Effects of the Posterior Distribution on the Power Spectrum
# Review of astro-ph.CO/1504.03979
# October 2017
# Mike S. Wang, ICG
# =============================================================================
# --------------... | MikeSWang/Testing-Repos | Project-1-Survey.py | Python | apache-2.0 | 7,489 | [
"Gaussian"
] | ba0ea9474494b81568647c5aaa1ed0736745b4a0c40eecf42573e0ddb45feb18 |
# -*- coding: utf-8 -*-
"""
ORCA Open Remote Control Application
Copyright (C) 2013-2020 Carsten Thielepape
Please contact me by : http://www.orca-remote.org/
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as publi... | thica/ORCA-Remote | src/ORCA/utils/wait/StopWait.py | Python | gpl-3.0 | 1,239 | [
"ORCA"
] | d951eac6ede42d8ed496d0d51c673b5877f093556594130dfb3a47c0967c0193 |
# Tests writing amber format with amber parameters
# Special isopeptide bond between two residues
import os
import pytest
from vmd import atomsel, molecule
dir = os.path.dirname(__file__)
#==============================================================================
def verify_amber(molid):
molecule.set_top(mol... | Eigenstate/dabble | dabble/test/3NOB/test_3nob.py | Python | gpl-2.0 | 5,235 | [
"Amber",
"VMD"
] | 5a1a71e41c7dff79a0b16bd5ff02c1ddcfb612e99feeb461762d6cc562973522 |
r"""
File I/O (:mod:`skbio.io`)
==========================
.. currentmodule:: skbio.io
This package provides I/O functionality for skbio.
Introduction to I/O
-------------------
Reading and writing files (I/O) can be a complicated task:
* A file format can sometimes be read into more than one in-memory
representa... | Kleptobismol/scikit-bio | skbio/io/__init__.py | Python | bsd-3-clause | 11,016 | [
"scikit-bio"
] | 05a711bad5b5741b7aeb4a0c5a7b70f9eeb9f3742cfe06f226f4fba8612b006c |
#!/usr/bin/env python3
# Nengo Statistical Inference Implementation for the UWaterloo course SYDE 750
# Copyright (C) 2017 Andreas Stöckel
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, eith... | astoeckel/syde_750_project_lifespan_inference | code/analyse_net_lifespan_inference.py | Python | gpl-3.0 | 12,079 | [
"Gaussian"
] | f3a2a3b99bd8b977688cb7e2564702b3276721342250036bb212add4aa26acfa |
# Script to plot sub-surface ocean temperature drift.
# Analysis: using newer python 2.7.3
"""
module purge
module use -a /home/fms/local/modulefiles
module load gcc
module load netcdf/4.2
module load python/2.7.3
"""
import os
import math
import numpy as np
from numpy import ma
from netCDF4 import Dataset, MFDatase... | StevePny/NOAA-GFDL-MOM6-examples | tools/analysis/MOM6_ts_annual.py | Python | gpl-3.0 | 5,031 | [
"NetCDF"
] | 0f249aaff842ee7bf97e348414369d128fc2862674ca7c084fde3526125754df |
from __future__ import print_function
import lammps
import ctypes
import traceback
import numpy as np
class LAMMPSFix(object):
def __init__(self, ptr, group_name="all"):
self.lmp = lammps.lammps(ptr=ptr)
self.group_name = group_name
class LAMMPSFixMove(LAMMPSFix):
def __init__(self, ptr, group... | quang-ha/lammps | examples/python/py_nve.py | Python | gpl-2.0 | 3,986 | [
"LAMMPS"
] | 42f59541b96d5c50f25e5d531019f9cc89ff31491c74640be491190b294d6877 |
# -*- coding: utf-8 -*-
import smtplib
import linecache
import sys
import re
from utils import config
from email.mime.multipart import MIMEMultipart
from email.mime.text import MIMEText
"""
Mail Unit, just prepare mail and send it
Author: Crash_
Version: 0.9 (Beta Version)
This program is intended t... | crash2over/ghostsubscribermail | control/mail.py | Python | gpl-3.0 | 6,227 | [
"VisIt"
] | b7750d506182fcce555becc6a7efc108a1197b4f479a9b4104943f3cb223214b |
# Copyright (C) 2012,2013
# Max Planck Institute for Polymer Research
# Copyright (C) 2008,2009,2010,2011
# Max-Planck-Institute for Polymer Research & Fraunhofer SCAI
#
# This file is part of ESPResSo++.
#
# ESPResSo++ is free software: you can redistribute it and/or modify
# it under the terms of t... | BackupTheBerlios/espressopp | src/interaction/Morse.py | Python | gpl-3.0 | 7,218 | [
"ESPResSo"
] | a0093a6b7bbbeda5514cfff087cb65f8e8c92a8354ea6b292e3094ae26e3de76 |
#
# Copyright 2016 The BigDL Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in ... | intel-analytics/BigDL | python/orca/src/bigdl/orca/tfpark/text/estimator/bert_ner.py | Python | apache-2.0 | 3,844 | [
"ORCA"
] | be7a8cd263a7da47a5dd6d095cc308e19b5718076ed329a78f5bde3037c798df |
# Copyright (C) 2014, 2015, 2016 SICS Swedish ICT AB
#
# Main author: Tomas Olsson <tol@sics.se>
#
# License: BSD 3 clause
import logging
import datetime
import matplotlib
from pandas.core import datetools
from pandas import date_range
from pyface.gui import GUI
from traits.api import HasTraits, Instance
from traits... | STREAM3/visisc | _visisc_modules/EventVisualization.py | Python | bsd-3-clause | 25,628 | [
"Mayavi"
] | f33dd1391f5382d168a6678b51ba80f5928bae8389a5897be84f357e7880ffa6 |
#!/usr/bin/env python
# CREATED:2014-01-18 14:09:05 by Brian McFee <brm2132@columbia.edu>
# unit tests for util routines
# Disable cache
import os
try:
os.environ.pop('LIBROSA_CACHE_DIR')
except:
pass
import platform
import numpy as np
import scipy.sparse
import pytest
import warnings
import librosa
from tes... | carlthome/librosa | tests/test_util.py | Python | isc | 36,574 | [
"Brian"
] | 258b77ae52824d696f2e9cd72b99f13b406df18c4c6b40ec5ff8c16e314fba72 |
#! /usr/bin/env python
# coding:utf-8
# Author: bingwang
# Email: toaya.kase@gmail.com
# Copylight 2012-2012 Bing Wang
# LICENCES: GPL v3.0
__docformat__ = "epytext en"
# dependents: scer.gff,scer.fsa file in SGD_dataset/
# biopython
# bing
from Bio import SeqIO
from bing import gff_parse
flanking = 0
#indicate th... | BingW/yeast_anno_pipe | src/get_intron.py | Python | gpl-3.0 | 1,848 | [
"Biopython"
] | f933831cea3520bc773624735f798fd574c4098d68e2756555ad62f6c2c33725 |
############################################################################
# Copyright 2019 Philip Morris Products S.A. #
# #
# Licensed under the Apache License, Version 2.0 (the "License"); #
# you may no... | sgubianpm/RPackUtils | setup.py | Python | gpl-2.0 | 3,249 | [
"Bioconductor"
] | cbaa944bf19fae6a13a19b9aeb744107e07974b09d99adc908965be3ceffd59d |
# -*- coding: utf-8 -*-
# Author: Óscar Nájera
# License: 3-clause BSD
"""
Backreferences Generator
========================
Parses example file code in order to keep track of used functions
"""
from __future__ import print_function, unicode_literals
import ast
import codecs
import collections
from html import escape... | Eric89GXL/sphinx-gallery | sphinx_gallery/backreferences.py | Python | bsd-3-clause | 12,437 | [
"VisIt"
] | ace06f06fc16dfc424e2d3da642cb71bca8805f429a3fb713d1690593644521b |
import h5py
import numpy
import os
import sys
h5file=os.path.realpath(sys.argv[-1])
h5dir=os.path.dirname(h5file)
f=h5py.File(h5file)
exportdir=os.path.join(h5dir,'exported')
try:
os.mkdir(exportdir)
except:
print 'mkdir error, maybe the export directory already exists?'
def h5exportfunc(name):
Deflname=name
... | Alwnikrotikz/hooke | mfp_igor_scripts/h5export.py | Python | lgpl-3.0 | 1,577 | [
"VisIt"
] | 73ac52e68ca20b610519a621f09c8e12f56bde210059a8b36123d8de6468c833 |
""" The TokenManagerClient is a class representing the client of the DIRAC TokenManager service.
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
__RCSID__ = "$Id$"
from DIRAC.Core.Base.Client import Client, createClient
@createClient("Framework/TokenM... | ic-hep/DIRAC | src/DIRAC/FrameworkSystem/Client/TokenManagerClient.py | Python | gpl-3.0 | 558 | [
"DIRAC"
] | 91d662183382366e5820c73c91ccf267dc10f09cb3ac5dec24bf9a724f454767 |
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